assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002886145.1_ASM288614v1	CP025593	Mycobacterium tuberculosis strain GG-111-10 chromosome, complete genome	4	335674-335788	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTCCCGTTGCCGCCGTTGCCGATCAGC	27	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_1|CP025593.1_333145_333328_-,NA	NA|561aa|up_9|CP025593.1_324552_326235_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_8|CP025593.1_326251_328447_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_7|CP025593.1_328560_329694_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_6|CP025593.1_329690_330311_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_5|CP025593.1_330407_330989_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_4|CP025593.1_330918_331644_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_3|CP025593.1_331733_332654_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_2|CP025593.1_332693_333122_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_1|CP025593.1_333145_333328_-	NA	NA|615aa|up_0|CP025593.1_333422_335267_-	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|537aa|down_0|CP025593.1_339330_340941_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|CP025593.1_340964_341873_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|CP025593.1_342096_343992_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|CP025593.1_343988_345605_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|CP025593.1_345601_349594_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|CP025593.1_349590_349899_+	pfam00934, PE, PE family	NA|514aa|down_6|CP025593.1_349901_351443_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|CP025593.1_351491_351785_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|CP025593.1_351814_352105_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|CP025593.1_352115_353003_+	pfam14011, ESX-1_EspG, EspG family
GCA_002886145.1_ASM288614v1	CP025593	Mycobacterium tuberculosis strain GG-111-10 chromosome, complete genome	5	335860-335950	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTCCCGTTGCCGCCGTTGCCGATCAGC	27	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_1|CP025593.1_333145_333328_-,NA	NA|561aa|up_9|CP025593.1_324552_326235_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_8|CP025593.1_326251_328447_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_7|CP025593.1_328560_329694_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_6|CP025593.1_329690_330311_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_5|CP025593.1_330407_330989_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_4|CP025593.1_330918_331644_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_3|CP025593.1_331733_332654_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_2|CP025593.1_332693_333122_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_1|CP025593.1_333145_333328_-	NA	NA|615aa|up_0|CP025593.1_333422_335267_-	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|537aa|down_0|CP025593.1_339330_340941_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|CP025593.1_340964_341873_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|CP025593.1_342096_343992_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|CP025593.1_343988_345605_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|CP025593.1_345601_349594_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|CP025593.1_349590_349899_+	pfam00934, PE, PE family	NA|514aa|down_6|CP025593.1_349901_351443_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|CP025593.1_351491_351785_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|CP025593.1_351814_352105_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|CP025593.1_352115_353003_+	pfam14011, ESX-1_EspG, EspG family
GCA_002886145.1_ASM288614v1	CP025593	Mycobacterium tuberculosis strain GG-111-10 chromosome, complete genome	6	336622-336732	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTCCCGTTGCCGCCGTTGCCGATCAGC	27	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_1|CP025593.1_333145_333328_-,NA	NA|561aa|up_9|CP025593.1_324552_326235_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_8|CP025593.1_326251_328447_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_7|CP025593.1_328560_329694_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_6|CP025593.1_329690_330311_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_5|CP025593.1_330407_330989_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_4|CP025593.1_330918_331644_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_3|CP025593.1_331733_332654_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_2|CP025593.1_332693_333122_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_1|CP025593.1_333145_333328_-	NA	NA|615aa|up_0|CP025593.1_333422_335267_-	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|537aa|down_0|CP025593.1_339330_340941_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|CP025593.1_340964_341873_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|CP025593.1_342096_343992_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|CP025593.1_343988_345605_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|CP025593.1_345601_349594_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|CP025593.1_349590_349899_+	pfam00934, PE, PE family	NA|514aa|down_6|CP025593.1_349901_351443_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|CP025593.1_351491_351785_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|CP025593.1_351814_352105_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|CP025593.1_352115_353003_+	pfam14011, ESX-1_EspG, EspG family
GCA_002886145.1_ASM288614v1	CP025593	Mycobacterium tuberculosis strain GG-111-10 chromosome, complete genome	7	336987-337158	7	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTCCCGTTGCCGCCGTTGCCGATCAGC	27	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_1|CP025593.1_333145_333328_-,NA	NA|561aa|up_9|CP025593.1_324552_326235_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_8|CP025593.1_326251_328447_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_7|CP025593.1_328560_329694_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_6|CP025593.1_329690_330311_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_5|CP025593.1_330407_330989_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_4|CP025593.1_330918_331644_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_3|CP025593.1_331733_332654_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_2|CP025593.1_332693_333122_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_1|CP025593.1_333145_333328_-	NA	NA|615aa|up_0|CP025593.1_333422_335267_-	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|537aa|down_0|CP025593.1_339330_340941_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|CP025593.1_340964_341873_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|CP025593.1_342096_343992_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|CP025593.1_343988_345605_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|CP025593.1_345601_349594_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|CP025593.1_349590_349899_+	pfam00934, PE, PE family	NA|514aa|down_6|CP025593.1_349901_351443_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|CP025593.1_351491_351785_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|CP025593.1_351814_352105_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|CP025593.1_352115_353003_+	pfam14011, ESX-1_EspG, EspG family
GCA_002886145.1_ASM288614v1	CP025593	Mycobacterium tuberculosis strain GG-111-10 chromosome, complete genome	8	337482-337572	8	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTCCCGTTGCCGCCGTTGCCGATCAGC	27	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_1|CP025593.1_333145_333328_-,NA	NA|561aa|up_9|CP025593.1_324552_326235_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_8|CP025593.1_326251_328447_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_7|CP025593.1_328560_329694_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_6|CP025593.1_329690_330311_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_5|CP025593.1_330407_330989_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_4|CP025593.1_330918_331644_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_3|CP025593.1_331733_332654_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_2|CP025593.1_332693_333122_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_1|CP025593.1_333145_333328_-	NA	NA|615aa|up_0|CP025593.1_333422_335267_-	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|537aa|down_0|CP025593.1_339330_340941_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|CP025593.1_340964_341873_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|CP025593.1_342096_343992_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|CP025593.1_343988_345605_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|CP025593.1_345601_349594_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|CP025593.1_349590_349899_+	pfam00934, PE, PE family	NA|514aa|down_6|CP025593.1_349901_351443_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|CP025593.1_351491_351785_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|CP025593.1_351814_352105_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|CP025593.1_352115_353003_+	pfam14011, ESX-1_EspG, EspG family
GCA_002886145.1_ASM288614v1	CP025593	Mycobacterium tuberculosis strain GG-111-10 chromosome, complete genome	9	337689-338702	2,9,1,10,11	CRT,CRISPRCasFinder,PILER-CR,CRISPRCasFinder,CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	NNNNNNCCGCCGGCGCCGCCG,GTCCCGTTGCCGCCGTTGCCGATCAGC,ATCCGCCGCTACCGCCGGTGCCGCCGGCGCCGAACAGCCCGCC,GTCCCGTTGCCGCCGTTGCCGATCAGC,GTCCCGTTGCCGCCGTTGCCGATCAGC	21,27,43,27,27	3	8	338547-338573|338592-338609|338592-338609|338592-338609|338592-338609|338592-338609|338592-338609|338559-338612	CP025593.1_335776-335802|CP025593.1_335839-335856|CP025593.1_673114-673131|CP025593.1_1216996-1216979|CP025593.1_2423677-2423694|CP025593.1_3738483-3738500|CP025593.1_3739848-3739865|CP025593.1_335806-335859	NA:NA:NA:NA:NA	15,4,2,4,4	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_1|CP025593.1_333145_333328_-,NA	NA|561aa|up_9|CP025593.1_324552_326235_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_8|CP025593.1_326251_328447_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_7|CP025593.1_328560_329694_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_6|CP025593.1_329690_330311_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_5|CP025593.1_330407_330989_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_4|CP025593.1_330918_331644_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_3|CP025593.1_331733_332654_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_2|CP025593.1_332693_333122_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_1|CP025593.1_333145_333328_-	NA	NA|615aa|up_0|CP025593.1_333422_335267_-	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|537aa|down_0|CP025593.1_339330_340941_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|CP025593.1_340964_341873_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|CP025593.1_342096_343992_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|CP025593.1_343988_345605_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|CP025593.1_345601_349594_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|CP025593.1_349590_349899_+	pfam00934, PE, PE family	NA|514aa|down_6|CP025593.1_349901_351443_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|CP025593.1_351491_351785_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|CP025593.1_351814_352105_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|CP025593.1_352115_353003_+	pfam14011, ESX-1_EspG, EspG family
GCA_002886145.1_ASM288614v1	CP025593	Mycobacterium tuberculosis strain GG-111-10 chromosome, complete genome	15	1572169-1573241	15	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|74aa|up_8|CP025593.1_1563469_1563691_-,NA|106aa|up_7|CP025593.1_1563932_1564250_+,NA	NA|540aa|up_9|CP025593.1_1561752_1563372_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|74aa|up_8|CP025593.1_1563469_1563691_-	NA	NA|106aa|up_7|CP025593.1_1563932_1564250_+	NA	NA|209aa|up_6|CP025593.1_1564384_1565011_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|CP025593.1_1565076_1565409_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|CP025593.1_1565424_1566681_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|CP025593.1_1566808_1568020_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|CP025593.1_1568092_1569571_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|CP025593.1_1569567_1570953_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|CP025593.1_1571030_1572065_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|CP025593.1_1574094_1574496_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|CP025593.1_1574492_1574750_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|CP025593.1_1574832_1575792_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|CP025593.1_1575816_1576779_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|CP025593.1_1576912_1577515_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|CP025593.1_1577595_1579563_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|CP025593.1_1579580_1580405_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|CP025593.1_1580573_1581056_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|CP025593.1_1581127_1581952_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|CP025593.1_1582148_1583087_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCA_002886145.1_ASM288614v1	CP025593	Mycobacterium tuberculosis strain GG-111-10 chromosome, complete genome	19	3119193-3120538	4,17,5	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-C,Type III-D,Type III-B	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	17,17,18	18	TypeIII-A,TypeIII-C,TypeIII-D,TypeIII-B	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|135aa|up_7|CP025593.1_3112874_3113279_+,NA|64aa|up_6|CP025593.1_3113275_3113467_+,NA|86aa|up_4|CP025593.1_3115053_3115311_+,NA|104aa|up_3|CP025593.1_3115415_3115727_+,NA|203aa|up_2|CP025593.1_3116146_3116755_+,NA	NA|92aa|up_9|CP025593.1_3112021_3112297_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|122aa|up_8|CP025593.1_3112436_3112802_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|135aa|up_7|CP025593.1_3112874_3113279_+	NA	NA|64aa|up_6|CP025593.1_3113275_3113467_+	NA	NA|385aa|up_5|CP025593.1_3113665_3114820_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|CP025593.1_3115053_3115311_+	NA	NA|104aa|up_3|CP025593.1_3115415_3115727_+	NA	NA|203aa|up_2|CP025593.1_3116146_3116755_+	NA	NA|470aa|up_1|CP025593.1_3116825_3118235_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|CP025593.1_3118231_3119044_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|CP025593.1_3120564_3121826_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|CP025593.1_3123623_3123965_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|CP025593.1_3123965_3124982_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|CP025593.1_3124994_3126143_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|CP025593.1_3126238_3127366_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|CP025593.1_3127362_3128271_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|CP025593.1_3128251_3128962_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|CP025593.1_3128971_3129346_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|816aa|down_8|CP025593.1_3129342_3131790_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_9|CP025593.1_3131786_3132731_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCA_002886145.1_ASM288614v1	CP025593	Mycobacterium tuberculosis strain GG-111-10 chromosome, complete genome	20	3121861-3123575	18,6,5	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-C,Type III-D,Type III-B	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	23,23,22	23	TypeIII-A,TypeIII-C,TypeIII-D,TypeIII-B	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|135aa|up_8|CP025593.1_3112874_3113279_+,NA|64aa|up_7|CP025593.1_3113275_3113467_+,NA|86aa|up_5|CP025593.1_3115053_3115311_+,NA|104aa|up_4|CP025593.1_3115415_3115727_+,NA|203aa|up_3|CP025593.1_3116146_3116755_+,NA	NA|122aa|up_9|CP025593.1_3112436_3112802_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|135aa|up_8|CP025593.1_3112874_3113279_+	NA	NA|64aa|up_7|CP025593.1_3113275_3113467_+	NA	NA|385aa|up_6|CP025593.1_3113665_3114820_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|CP025593.1_3115053_3115311_+	NA	NA|104aa|up_4|CP025593.1_3115415_3115727_+	NA	NA|203aa|up_3|CP025593.1_3116146_3116755_+	NA	NA|470aa|up_2|CP025593.1_3116825_3118235_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|CP025593.1_3118231_3119044_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|CP025593.1_3120564_3121826_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|CP025593.1_3123623_3123965_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|CP025593.1_3123965_3124982_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|CP025593.1_3124994_3126143_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|CP025593.1_3126238_3127366_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|CP025593.1_3127362_3128271_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|CP025593.1_3128251_3128962_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|CP025593.1_3128971_3129346_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|816aa|down_7|CP025593.1_3129342_3131790_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_8|CP025593.1_3131786_3132731_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|CP025593.1_3132908_3133454_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCA_002886145.1_ASM288614v1	CP025593	Mycobacterium tuberculosis strain GG-111-10 chromosome, complete genome	21	3740715-3741475	7	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGNTNCCNCCGTNNCCGCC	23	0	0	NA	NA	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|160aa|up_9|CP025593.1_3720770_3721250_+,NA|164aa|down_2|CP025593.1_3753251_3753743_-,NA|79aa|down_5|CP025593.1_3755357_3755594_-	NA|160aa|up_9|CP025593.1_3720770_3721250_+	NA	NA|147aa|up_8|CP025593.1_3721268_3721709_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|CP025593.1_3721742_3722612_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|CP025593.1_3722632_3723643_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|CP025593.1_3723927_3724560_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|CP025593.1_3724626_3725856_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|CP025593.1_3726138_3727488_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|CP025593.1_3727499_3728639_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|CP025593.1_3728635_3729367_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_0|CP025593.1_3729375_3736947_-	pfam00823, PPE, PPE family	NA|86aa|down_0|CP025593.1_3743227_3743485_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|CP025593.1_3743740_3753214_-	pfam00823, PPE, PPE family	NA|164aa|down_2|CP025593.1_3753251_3753743_-	NA	NA|149aa|down_3|CP025593.1_3753839_3754286_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|273aa|down_4|CP025593.1_3754322_3755141_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|79aa|down_5|CP025593.1_3755357_3755594_-	NA	NA|3717aa|down_6|CP025593.1_3755981_3767132_-	pfam00823, PPE, PPE family	NA|265aa|down_7|CP025593.1_3767375_3768170_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_8|CP025593.1_3768251_3768623_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|137aa|down_9|CP025593.1_3768520_3768931_-	pfam01565, FAD_binding_4, FAD binding domain
GCA_002886145.1_ASM288614v1	CP025593	Mycobacterium tuberculosis strain GG-111-10 chromosome, complete genome	22	4110706-4110794	19	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|65aa|up_9|CP025593.1_4099397_4099592_+,NA|257aa|up_7|CP025593.1_4101292_4102063_-,NA|90aa|up_2|CP025593.1_4107284_4107554_+,NA|233aa|up_0|CP025593.1_4109810_4110509_-,NA|126aa|down_6|CP025593.1_4116029_4116407_+	NA|65aa|up_9|CP025593.1_4099397_4099592_+	NA	NA|288aa|up_8|CP025593.1_4099674_4100538_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_7|CP025593.1_4101292_4102063_-	NA	NA|549aa|up_6|CP025593.1_4102059_4103706_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|267aa|up_5|CP025593.1_4103702_4104503_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_4|CP025593.1_4104558_4105485_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_3|CP025593.1_4105486_4107112_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|90aa|up_2|CP025593.1_4107284_4107554_+	NA	NA|652aa|up_1|CP025593.1_4107819_4109775_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|CP025593.1_4109810_4110509_-	NA	NA|173aa|down_0|CP025593.1_4110854_4111373_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|CP025593.1_4111373_4112357_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|CP025593.1_4112349_4113543_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|CP025593.1_4113548_4114370_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|CP025593.1_4114501_4115185_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|CP025593.1_4115184_4115922_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|CP025593.1_4116029_4116407_+	NA	NA|225aa|down_7|CP025593.1_4116505_4117180_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|CP025593.1_4117283_4118078_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|CP025593.1_4118084_4118540_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
