The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025754	Enterococcus faecium strain AALTL chromosome, complete genome	2817746	165620	216268	2817746	holin,transposase	Escherichia_phage(17.65%)	48	NA	NA
AUO60325.1|165620_166916_+|transposase	ISL3 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	5.0e-10
AUO60326.1|167025_167319_-	iron-sulfur cluster biosynthesis protein	NA	NA	NA	NA	NA
AUO60327.1|167346_168012_-	potassium transporter Trk	NA	NA	NA	NA	NA
AUO60328.1|168151_168784_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AUO60329.1|168790_169858_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AUO60330.1|169854_170610_-	hypothetical protein	NA	NA	NA	NA	NA
AUO60331.1|170753_171233_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
AUO60332.1|171368_172544_-	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
AUO60333.1|172708_173869_+	serine hydrolase	NA	A0A2R4AS58	Mycobacterium_phage	25.2	3.2e-08
AUO60334.1|173908_174856_-	epimerase	NA	A0A1V0SKV4	Klosneuvirus	38.1	6.6e-52
AUO60335.1|174988_176380_-	polymerase	NA	NA	NA	NA	NA
AUO60336.1|176505_176916_+	glycerol-3-phosphate cytidylyltransferase	NA	A0A1V0SGE7	Hokovirus	40.7	2.4e-19
AUO60337.1|178451_179879_-	sugar isomerase	NA	NA	NA	NA	NA
AUO60338.1|181020_182016_-	teichoic acid biosynthesis protein F	NA	NA	NA	NA	NA
AUO60339.1|182129_183119_-	beta-1,3-glucosyltransferase	NA	A0A1V0SAH6	Catovirus	33.6	7.7e-11
AUO60340.1|183090_183921_-	ammonia monooxygenase	NA	F2Y1U7	Organic_Lake_phycodnavirus	31.7	2.1e-14
AUO60341.1|183958_185350_-	UDP-phosphate galactose phosphotransferase	NA	NA	NA	NA	NA
AUO60342.1|185637_187776_-	glycosyl transferase family 2	NA	NA	NA	NA	NA
AUO60343.1|187814_189401_-	glycosyl transferase family 2	NA	NA	NA	NA	NA
AUO60344.1|189390_190611_-	teichoic acid ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.9	1.1e-11
AUO60345.1|190622_191429_-	teichoic acid ABC transporter permease	NA	NA	NA	NA	NA
AUO60346.1|191736_193011_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	36.1	8.6e-55
AUO60347.1|193275_194571_+|transposase	ISL3 family transposase ISEfa5	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
AUO60348.1|194667_195966_-	hypothetical protein	NA	NA	NA	NA	NA
AUO60349.1|195991_198025_-	hypothetical protein	NA	NA	NA	NA	NA
AUO60350.1|198058_198910_-	NAD(P)-dependent oxidoreductase	NA	A0A291LA50	Escherichia_phage	39.0	1.7e-38
AUO60351.1|199007_200036_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	42.9	6.4e-69
AUO60352.1|200057_200630_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	49.2	8.3e-42
AUO60353.1|200643_201510_-	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	62.5	3.7e-102
AUO60354.1|201609_202344_-	alpha-L-Rha alpha-1,3-L-rhamnosyltransferase	NA	NA	NA	NA	NA
AUO60355.1|202321_203149_-	glycosyl transferase family 2	NA	NA	NA	NA	NA
AUO60356.1|203148_203949_-	glycosyl transferase family 2	NA	NA	NA	NA	NA
AUO60357.1|203941_205081_-	undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
AUO60358.1|205156_206080_-	ribonuclease BN	NA	NA	NA	NA	NA
AUO60359.1|206111_206876_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
AUO60360.1|207033_207474_+	flavodoxin	NA	NA	NA	NA	NA
AUO60361.1|207651_208221_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUO60362.1|208477_209710_+	aminopeptidase	NA	NA	NA	NA	NA
AUO60363.1|210014_210215_+	hypothetical protein	NA	Q9AZR0	Lactococcus_phage	75.7	4.6e-08
AUO60364.1|210463_210766_+	hypothetical protein	NA	NA	NA	NA	NA
AUO60365.1|210801_211173_-	hypothetical protein	NA	NA	NA	NA	NA
AUO60366.1|211174_211576_-	hypothetical protein	NA	NA	NA	NA	NA
AUO60367.1|211589_211997_-	hypothetical protein	NA	NA	NA	NA	NA
AUO60368.1|212340_212835_+|transposase	transposase	transposase	NA	NA	NA	NA
AUO60369.1|212919_213756_-|transposase	transposase	transposase	A0A2I7SC85	Paenibacillus_phage	53.8	1.5e-76
AUO60370.1|213791_214082_-	transcriptional regulator	NA	A0A0C5AJ30	Paenibacillus_phage	61.5	4.4e-23
AUO60371.1|215021_216047_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A139ZVY1	Enterococcus_phage	61.3	2.8e-64
AUO60372.1|216043_216268_-|holin	holin	holin	NA	NA	NA	NA
>prophage 2
CP025754	Enterococcus faecium strain AALTL chromosome, complete genome	2817746	219493	250522	2817746	head,capsid,portal,tail,integrase,terminase	Enterococcus_phage(30.77%)	50	229280:229294	251301:251315
AUO60378.1|219493_221785_-	hypothetical protein	NA	A0A1D3SNL1	Enterococcus_phage	30.0	9.6e-89
AUO60379.1|221794_222532_-|tail	phage tail protein	tail	NA	NA	NA	NA
AUO60380.1|222582_226014_-|tail	phage tail tape measure protein	tail	A0A1D3SNL5	Enterococcus_phage	44.4	3.1e-67
AUO60381.1|226030_226171_-	hypothetical protein	NA	NA	NA	NA	NA
AUO60382.1|226215_226578_-	hypothetical protein	NA	NA	NA	NA	NA
AUO60383.1|226597_227206_-|tail	phage tail protein	tail	Q8W5Z9	Listeria_phage	41.1	3.0e-34
AUO60384.1|227217_227622_-	hypothetical protein	NA	R4IBU7	Listeria_phage	29.5	6.1e-07
AUO60385.1|227614_228016_-	hypothetical protein	NA	A0A1B1P759	Bacillus_phage	33.3	1.1e-13
AUO60386.1|228005_228359_-|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
AUO60387.1|228348_228660_-	hypothetical protein	NA	A0A1B1P751	Bacillus_phage	42.1	6.3e-12
AUO60388.1|228656_229532_-	hypothetical protein	NA	D2IYX3	Enterococcus_phage	74.2	5.6e-130
229280:229294	attL	AATGATCTTCTTCTA	NA	NA	NA	NA
AUO60389.1|229541_230702_-|capsid	major capsid protein	capsid	A0A1B1P752	Bacillus_phage	50.1	1.8e-99
AUO60390.1|230701_231388_-	peptidase S14	NA	A0A2I6PDD0	Staphylococcus_phage	39.7	1.0e-30
AUO60391.1|231350_232547_-|portal	phage portal protein	portal	A0A1B1P754	Bacillus_phage	40.7	2.1e-79
AUO60392.1|232548_234243_-|terminase	terminase	terminase	A0A1B1P766	Bacillus_phage	49.6	3.0e-148
AUO60393.1|234220_234535_-|terminase	terminase	terminase	A0A1S7FYW6	Listeria_phage	37.9	3.3e-08
AUO60394.1|234637_234943_-	hypothetical protein	NA	NA	NA	NA	NA
AUO60395.1|234923_235268_-	HNH endonuclease	NA	A0A1B1P757	Bacillus_phage	57.1	3.8e-26
AUO60396.1|235293_235461_-	thymidylate synthase	NA	NA	NA	NA	NA
AUO60397.1|235656_235863_-	hypothetical protein	NA	NA	NA	NA	NA
AUO60398.1|236316_236592_+	hypothetical protein	NA	A0A2H4JEH2	uncultured_Caudovirales_phage	45.7	9.9e-17
AUO60399.1|236588_236741_-	hypothetical protein	NA	NA	NA	NA	NA
AUO60400.1|237049_237463_-	autolysin	NA	C9E2P5	Enterococcus_phage	81.0	1.5e-56
AUO60401.1|237539_237836_-	hypothetical protein	NA	NA	NA	NA	NA
AUO60402.1|237832_238390_-	hypothetical protein	NA	A0A0C5KKV2	Enterococcus_phage	36.2	2.8e-10
AUO60403.1|238386_238806_-	DNA-packaging protein	NA	D2IZL0	Enterococcus_phage	54.3	4.1e-30
AUO60404.1|238802_239021_-	hypothetical protein	NA	NA	NA	NA	NA
AUO60405.1|239007_239364_-	hypothetical protein	NA	A0A2H4JAZ4	uncultured_Caudovirales_phage	37.4	3.1e-10
AUO60406.1|239363_239669_-	hypothetical protein	NA	NA	NA	NA	NA
AUO60407.1|239665_239827_-	antitoxin	NA	NA	NA	NA	NA
AUO60408.1|239823_240126_-	hypothetical protein	NA	NA	NA	NA	NA
AUO60409.1|240118_240283_-	hypothetical protein	NA	NA	NA	NA	NA
AUO60410.1|240287_240557_-	hypothetical protein	NA	NA	NA	NA	NA
AUO60411.1|240568_241318_-	helix-turn-helix domain-containing protein	NA	A0A1L2BY83	Clostridium_phage	54.0	1.7e-31
AUO60412.1|241320_242007_-	hypothetical protein	NA	C9E2N1	Enterococcus_phage	69.1	3.2e-88
AUO60413.1|242012_242684_-	hypothetical protein	NA	A0A1B1P7F0	Bacillus_phage	47.4	4.2e-29
AUO60414.1|242676_243018_-	hypothetical protein	NA	NA	NA	NA	NA
AUO60415.1|243074_243203_-	hypothetical protein	NA	NA	NA	NA	NA
AUO60416.1|243195_243894_-	phage regulatory protein	NA	D2IYT0	Enterococcus_phage	34.6	1.7e-25
AUO62865.1|243980_244451_+	hypothetical protein	NA	NA	NA	NA	NA
AUO60417.1|244493_244673_-	hypothetical protein	NA	NA	NA	NA	NA
AUO60418.1|244659_244998_-	hypothetical protein	NA	NA	NA	NA	NA
AUO60419.1|245013_245217_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AUO60420.1|245231_246008_-	phage antirepressor	NA	A0A1Q1PVU2	Staphylococcus_phage	53.8	1.1e-73
AUO60421.1|246306_246627_+	transcriptional regulator	NA	A0A1S5SDR1	Streptococcus_phage	40.2	2.0e-13
AUO60422.1|246635_247076_+	toxin	NA	NA	NA	NA	NA
AUO60423.1|247205_247667_+	hypothetical protein	NA	A0A0F6N4L7	Staphylococcus_phage	34.8	4.5e-06
AUO60424.1|247700_248336_+	DUF3221 domain-containing protein	NA	NA	NA	NA	NA
AUO60425.1|248448_249084_+	hypothetical protein	NA	NA	NA	NA	NA
AUO60426.1|249382_250522_+|integrase	site-specific integrase	integrase	Q9AZR0	Lactococcus_phage	47.1	2.6e-95
251301:251315	attR	AATGATCTTCTTCTA	NA	NA	NA	NA
>prophage 3
CP025754	Enterococcus faecium strain AALTL chromosome, complete genome	2817746	321677	330199	2817746		Streptococcus_phage(66.67%)	8	NA	NA
AUO60499.1|321677_323867_+	anaerobic ribonucleoside triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	66.6	1.8e-286
AUO60500.1|324181_324784_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	58.6	1.7e-53
AUO60501.1|324837_325959_-	DNA polymerase IV	NA	NA	NA	NA	NA
AUO60502.1|326067_326940_-	rRNA (cytidine-2'-O-)-methyltransferase	NA	M1PLC5	Streptococcus_phage	60.4	3.1e-88
AUO60503.1|327008_327356_-	DNA replication intiation control protein YabA	NA	M1PFV3	Streptococcus_phage	41.1	5.1e-18
AUO60504.1|328207_329146_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	34.4	3.3e-35
AUO60505.1|329159_329489_-	hypothetical protein	NA	NA	NA	NA	NA
AUO60506.1|329503_330199_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	52.6	1.0e-57
>prophage 4
CP025754	Enterococcus faecium strain AALTL chromosome, complete genome	2817746	766153	810019	2817746	tRNA,transposase	Streptococcus_phage(50.0%)	47	NA	NA
AUO60902.1|766153_767332_+|transposase	IS256 family transposase ISEf1	transposase	NA	NA	NA	NA
AUO60903.1|767370_767892_-	hypothetical protein	NA	NA	NA	NA	NA
AUO60904.1|767857_769495_+	hypothetical protein	NA	NA	NA	NA	NA
AUO60905.1|769639_770380_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AUO60906.1|770570_771206_-	hypothetical protein	NA	NA	NA	NA	NA
AUO60907.1|771352_772594_-	serine/threonine transporter SstT	NA	NA	NA	NA	NA
AUO60908.1|772827_773154_+	alkaline phosphatase	NA	NA	NA	NA	NA
AUO60909.1|773140_775852_+	sulfatase	NA	NA	NA	NA	NA
AUO60910.1|775898_777194_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	37.5	3.9e-55
AUO60911.1|777392_778151_-	DUF4767 domain-containing protein	NA	NA	NA	NA	NA
AUO60912.1|778207_779161_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
AUO60913.1|779252_780251_-	DUF4767 domain-containing protein	NA	NA	NA	NA	NA
AUO60914.1|780325_780622_-	peptidase	NA	NA	NA	NA	NA
AUO60915.1|780614_780908_-	hypothetical protein	NA	NA	NA	NA	NA
AUO60916.1|781053_781605_-	hypothetical protein	NA	NA	NA	NA	NA
AUO60917.1|781616_781751_-	hypothetical protein	NA	NA	NA	NA	NA
AUO60918.1|781778_782078_-	4'-phosphopantetheinyl transferase	NA	NA	NA	NA	NA
AUO60919.1|782104_782371_-	hypothetical protein	NA	NA	NA	NA	NA
AUO60920.1|782392_782551_-	hypothetical protein	NA	NA	NA	NA	NA
AUO60921.1|782717_783401_+	hypothetical protein	NA	NA	NA	NA	NA
AUO60922.1|783437_783935_-	N-acetyltransferase	NA	NA	NA	NA	NA
AUO60923.1|783990_784899_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
AUO60924.1|785149_785272_-	hypothetical protein	NA	NA	NA	NA	NA
AUO60925.1|785378_786170_-	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA	NA
AUO60926.1|786360_786996_-	hypothetical protein	NA	NA	NA	NA	NA
AUO60927.1|787261_788314_-	hypothetical protein	NA	NA	NA	NA	NA
AUO60928.1|788326_789265_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AUO60929.1|789715_790366_-	hypothetical protein	NA	NA	NA	NA	NA
AUO60930.1|790465_790975_-	cytoplasmic protein	NA	Q9EYF4	Enterobacteria_phage	34.8	2.8e-17
AUO60931.1|791220_792540_-|transposase	IS1380 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	82.7	6.3e-210
AUO60932.1|793021_793405_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUO60933.1|793645_794260_-	N-acetyltransferase	NA	NA	NA	NA	NA
AUO60934.1|794403_794904_+	transcriptional regulator	NA	NA	NA	NA	NA
AUO60935.1|795075_796050_-	tagatose-bisphosphate aldolase	NA	NA	NA	NA	NA
AUO60936.1|796068_796524_-	PTS fructose transporter subunit IIA	NA	NA	NA	NA	NA
AUO60937.1|796551_797997_-	PTS fructose transporter subunit IIC	NA	NA	NA	NA	NA
AUO60938.1|797993_798929_-	1-phosphofructokinase	NA	NA	NA	NA	NA
AUO60939.1|799096_799855_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AUO60940.1|800349_801549_-	MFS transporter	NA	NA	NA	NA	NA
AUO60941.1|801991_802483_-	hypothetical protein	NA	NA	NA	NA	NA
AUO60942.1|802509_803655_-	galactonate dehydratase	NA	Q6A202	Oenococcus_phage	33.4	1.2e-52
AUO60943.1|803669_805037_-	PTS galactitol transporter subunit IIC	NA	NA	NA	NA	NA
AUO60944.1|805061_805340_-	PTS galactitol transporter subunit IIB	NA	NA	NA	NA	NA
AUO60945.1|805358_805817_-	PTS galactitol transporter subunit IIA	NA	NA	NA	NA	NA
AUO60946.1|805828_806449_-	2-dehydro-3-deoxyphosphogluconate aldolase	NA	NA	NA	NA	NA
AUO60947.1|806459_808502_-	transcriptional antiterminator	NA	NA	NA	NA	NA
AUO60948.1|808879_810019_-|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025754	Enterococcus faecium strain AALTL chromosome, complete genome	2817746	826186	837983	2817746		Streptococcus_phage(62.5%)	8	NA	NA
AUO60961.1|826186_828013_-	group II intron reverse transcriptase/maturase	NA	H7BVW2	unidentified_phage	26.8	3.7e-11
AUO60962.1|828709_830263_-	ATP/GTP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	98.0	5.4e-269
AUO60963.1|830246_830639_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	99.2	4.6e-68
AUO60964.1|830725_831223_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	97.6	1.3e-88
AUO60965.1|831339_831507_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	98.2	4.9e-19
AUO60966.1|831667_833578_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	29.8	7.1e-37
AUO60967.1|834361_835567_-	replication initiation protein	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
AUO60968.1|836123_837983_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	26.0	2.8e-30
>prophage 6
CP025754	Enterococcus faecium strain AALTL chromosome, complete genome	2817746	841847	929790	2817746	tRNA,holin,transposase,protease	Bacillus_phage(19.05%)	84	NA	NA
AUO60975.1|841847_843137_+|protease	serine protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	30.2	5.7e-22
AUO60976.1|843175_843781_-|tRNA	tRNA-binding protein	tRNA	NA	NA	NA	NA
AUO60977.1|843976_844441_-	universal stress protein UspA	NA	NA	NA	NA	NA
AUO60978.1|844462_844783_-	thiol reductase thioredoxin	NA	NA	NA	NA	NA
AUO60979.1|844925_846005_-	glutamyl aminopeptidase	NA	NA	NA	NA	NA
AUO60980.1|846204_846555_+	peptidase	NA	NA	NA	NA	NA
AUO60981.1|846739_847693_+	glycosyl transferase	NA	NA	NA	NA	NA
AUO60982.1|847705_849493_+	hypothetical protein	NA	NA	NA	NA	NA
AUO60983.1|849479_850682_+	hypothetical protein	NA	NA	NA	NA	NA
AUO60984.1|850757_852176_-	dipeptidase PepV	NA	NA	NA	NA	NA
AUO60985.1|852324_853170_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AUO60986.1|853173_853614_+	acyl-CoA thioester hydrolase	NA	NA	NA	NA	NA
AUO60987.1|853663_853858_+	hypothetical protein	NA	NA	NA	NA	NA
AUO60988.1|853993_854680_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUO60989.1|855087_855777_-	hypothetical protein	NA	NA	NA	NA	NA
AUO60990.1|855751_857896_-	hydantoinase	NA	NA	NA	NA	NA
AUO60991.1|857928_859167_-	citrate transporter	NA	NA	NA	NA	NA
AUO60992.1|859084_859267_-	hypothetical protein	NA	NA	NA	NA	NA
AUO60993.1|859518_859878_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
AUO60994.1|859930_860131_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
AUO60995.1|860202_860727_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.3	1.4e-14
AUO60996.1|860878_861025_+	hypothetical protein	NA	NA	NA	NA	NA
AUO60997.1|861046_861679_+	hypothetical protein	NA	NA	NA	NA	NA
AUO60998.1|861680_862586_-	magnesium transporter CorA	NA	NA	NA	NA	NA
AUO60999.1|862670_863330_-	deoxynucleoside kinase	NA	C1KFI3	Lactobacillus_virus	51.8	4.3e-58
AUO61000.1|863645_864590_+	mevalonate kinase	NA	NA	NA	NA	NA
AUO61001.1|864582_865560_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
AUO61002.1|865572_866658_+	phosphomevalonate kinase	NA	NA	NA	NA	NA
AUO61003.1|866654_867719_+	type 2 isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA	NA
AUO61004.1|867967_868774_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
AUO61005.1|869077_869302_-	hypothetical protein	NA	NA	NA	NA	NA
AUO61006.1|869327_870134_-|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	52.5	9.2e-79
AUO61007.1|870130_870667_-|transposase	transposase	transposase	A0A1B1P776	Bacillus_phage	37.6	2.9e-20
AUO61008.1|871292_871772_-	TRAP transporter small permease protein	NA	NA	NA	NA	NA
AUO61009.1|871777_872635_-	hypothetical protein	NA	NA	NA	NA	NA
AUO61010.1|874049_875660_+|transposase	DDE transposase	transposase	A0A1X9I5T2	Streptococcus_phage	48.0	8.4e-124
AUO61011.1|875567_878168_-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase	NA	NA	NA	NA	NA
AUO61012.1|878193_878373_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61013.1|878469_878850_-	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
AUO61014.1|878946_880092_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	40.9	2.5e-82
AUO61015.1|880320_881274_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
AUO61016.1|881313_882075_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61017.1|882242_884882_-	magnesium-transporting ATPase	NA	A0A1J0FA34	Only_Syngen_Nebraska_virus	31.2	1.6e-84
AUO61018.1|885591_886887_-|transposase	ISL3 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	5.0e-10
AUO61019.1|887048_888344_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	37.2	1.5e-54
AUO61020.1|888434_889388_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
AUO61021.1|891064_892096_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AUO61022.1|892288_893464_+	glycine/betaine ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	32.9	1.0e-17
AUO61023.1|893467_894109_+|holin	choline ABC transporter permease	holin	NA	NA	NA	NA
AUO61024.1|894105_895023_+	osmoprotectant ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUO61025.1|895019_895691_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUO61026.1|896002_896122_-	hypothetical protein	NA	NA	NA	NA	NA
AUO61027.1|896232_896721_-	mannosyl-glycoprotein endo-beta-N-acetylglucosamidase	NA	NA	NA	NA	NA
AUO61028.1|896921_897188_-	addiction module protein	NA	NA	NA	NA	NA
AUO61029.1|897187_897451_-	prevent-host-death protein	NA	NA	NA	NA	NA
AUO61030.1|897925_898111_+	transcriptional regulator	NA	NA	NA	NA	NA
AUO61031.1|898252_900076_-	amino acid permease	NA	NA	NA	NA	NA
AUO61032.1|900262_900484_-	cation transporter	NA	NA	NA	NA	NA
AUO61033.1|900672_903378_-	phage infection protein	NA	NA	NA	NA	NA
AUO61034.1|903603_904563_-|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	26.8	2.2e-10
AUO61035.1|904829_906125_+|transposase	ISL3 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.2	1.1e-09
AUO61036.1|906270_907218_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AUO61037.1|907407_907677_+	30S ribosomal protein S14	NA	NA	NA	NA	NA
AUO61038.1|907629_907836_-	hypothetical protein	NA	NA	NA	NA	NA
AUO61039.1|907852_908215_-	PemK family transcriptional regulator	NA	A0A291I9M9	Lactobacillus_phage	37.8	7.6e-09
AUO61040.1|908225_909347_-	alanine racemase	NA	NA	NA	NA	NA
AUO61041.1|909362_909713_-	holo-ACP synthase	NA	NA	NA	NA	NA
AUO61042.1|909842_911354_-	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.2	6.6e-62
AUO61043.1|911675_913088_-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA	NA
AUO61044.1|913180_914257_-	D-alanine--D-alanine ligase A	NA	NA	NA	NA	NA
AUO61045.1|914449_916198_+	ABC transporter	NA	M4R0M8	Ostreococcus_lucimarinus_virus	28.1	1.3e-40
AUO61046.1|916446_916914_-	hypothetical protein	NA	NA	NA	NA	NA
AUO61047.1|916897_918271_-	hypothetical protein	NA	NA	NA	NA	NA
AUO61048.1|918591_919080_-	acetyltransferase	NA	NA	NA	NA	NA
AUO61049.1|919772_920579_-|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	52.5	9.2e-79
AUO61050.1|920575_921112_-|transposase	transposase	transposase	A0A1B1P776	Bacillus_phage	37.6	2.9e-20
AUO61051.1|921626_922256_-	uridine kinase	NA	A0A1V0SAA3	Catovirus	40.2	3.1e-34
AUO61052.1|922339_923035_-	noncanonical pyrimidine nucleotidase, YjjG family	NA	NA	NA	NA	NA
AUO61053.1|923047_923764_-	16S rRNA pseudouridine(516) synthase	NA	NA	NA	NA	NA
AUO61054.1|924093_924702_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
AUO61055.1|925026_925350_+	GTP cyclohydrolase	NA	NA	NA	NA	NA
AUO61056.1|925531_926902_+	MATE family efflux transporter	NA	NA	NA	NA	NA
AUO61057.1|927248_928427_+|transposase	IS110 family transposase	transposase	A0A1X9I5Z0	Streptococcus_phage	39.9	3.8e-65
AUO61058.1|928494_929790_+|transposase	ISL3 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	5.0e-10
>prophage 7
CP025754	Enterococcus faecium strain AALTL chromosome, complete genome	2817746	955329	986413	2817746	tRNA,transposase	Lysinibacillus_phage(10.0%)	33	NA	NA
AUO61085.1|955329_956877_-|transposase	transposase	transposase	NA	NA	NA	NA
AUO61086.1|956978_957332_-|transposase	transposase	transposase	NA	NA	NA	NA
AUO61087.1|957321_957564_-	hypothetical protein	NA	NA	NA	NA	NA
AUO61088.1|957775_959071_+|transposase	ISL3 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
AUO61089.1|959209_959770_-	septum formation inhibitor Maf	NA	NA	NA	NA	NA
AUO61090.1|959791_961900_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	41.1	1.8e-57
AUO61091.1|961917_964563_-	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	26.1	3.6e-39
AUO61092.1|964546_964960_-	hypothetical protein	NA	NA	NA	NA	NA
AUO61093.1|964937_965735_-	metallophosphoesterase	NA	NA	NA	NA	NA
AUO61094.1|965987_966146_+	hydrolase	NA	NA	NA	NA	NA
AUO61095.1|966142_966916_-	HAD family hydrolase	NA	NA	NA	NA	NA
AUO61096.1|966935_967571_-	6-O-methylguanine DNA methyltransferase	NA	NA	NA	NA	NA
AUO61097.1|967598_968450_-	formate-nitrite transporter	NA	NA	NA	NA	NA
AUO61098.1|968711_969323_+	30S ribosomal protein S4	NA	NA	NA	NA	NA
AUO61099.1|969462_970002_+	BioY family transporter	NA	NA	NA	NA	NA
AUO61100.1|970071_970581_-	hypothetical protein	NA	E7DN70	Pneumococcus_phage	31.8	7.5e-10
AUO61101.1|970961_971723_-	NAD(P)-dependent dehydrogenase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	31.7	1.2e-16
AUO61102.1|971719_971941_-	hypothetical protein	NA	A0A0S2MV93	Bacillus_phage	33.3	1.1e-05
AUO62887.1|971930_973544_-	M protein trans-acting positive regulator	NA	NA	NA	NA	NA
AUO61103.1|973543_974245_-	hypothetical protein	NA	NA	NA	NA	NA
AUO61104.1|974237_974678_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
AUO61105.1|974973_975708_+	aquaporin	NA	NA	NA	NA	NA
AUO61106.1|975753_977199_-|transposase	DDE transposase	transposase	A0A1X9I5T2	Streptococcus_phage	47.8	2.2e-123
AUO61107.1|977456_978416_+|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	26.8	2.2e-10
AUO61108.1|978648_979548_-	metallophosphoesterase	NA	NA	NA	NA	NA
AUO61109.1|979557_979914_-	hypothetical protein	NA	NA	NA	NA	NA
AUO61110.1|980269_980566_+|tRNA	phenylalanyl-tRNA synthetase subunit alpha	tRNA	NA	NA	NA	NA
AUO62888.1|981209_982217_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUO61111.1|982185_982941_-	iron ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	28.1	2.2e-13
AUO61112.1|982937_983897_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AUO61113.1|983889_984840_-	iron ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	40.5	1.6e-66
AUO61114.1|984989_985442_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61115.1|985459_986413_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025754	Enterococcus faecium strain AALTL chromosome, complete genome	2817746	1111080	1184761	2817746	tRNA,integrase,transposase,protease	uncultured_Mediterranean_phage(13.33%)	59	1153971:1153985	1175793:1175807
AUO61245.1|1111080_1112352_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	53.4	2.0e-88
AUO61246.1|1112645_1113854_-	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	27.3	2.7e-26
AUO61247.1|1113840_1114530_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	38.1	1.8e-38
AUO61248.1|1116909_1117107_-	hypothetical protein	NA	NA	NA	NA	NA
AUO61249.1|1121262_1121739_+	CtsR family transcriptional regulator	NA	NA	NA	NA	NA
AUO61250.1|1121745_1124238_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpC	protease	A0A0A8J958	Klebsiella_phage	38.3	9.0e-125
AUO61251.1|1124389_1125685_-|transposase	ISL3 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	5.0e-10
AUO61252.1|1125980_1126904_+	peptidase U32	NA	NA	NA	NA	NA
AUO61253.1|1126909_1128163_+|protease	protease	protease	Q6DW11	Phage_TP	32.9	1.3e-42
AUO61254.1|1128296_1129643_+	glutathione-disulfide reductase	NA	NA	NA	NA	NA
AUO61255.1|1130577_1131531_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
AUO61256.1|1131543_1132713_-	thiamine biosynthesis protein ApbE	NA	NA	NA	NA	NA
AUO61257.1|1132736_1133693_-	FMN-binding domain-containing protein	NA	NA	NA	NA	NA
AUO61258.1|1133973_1135908_+	NADH dehydrogenase	NA	NA	NA	NA	NA
AUO61259.1|1136201_1136375_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61260.1|1136364_1136781_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61261.1|1136794_1137361_+	heptaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AUO61262.1|1137383_1138370_+	geranylgeranyl pyrophosphate synthase	NA	NA	NA	NA	NA
AUO61263.1|1138524_1140507_-	cell surface protein	NA	NA	NA	NA	NA
AUO61264.1|1140793_1141318_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61265.1|1141634_1142603_-	bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor	NA	NA	NA	NA	NA
AUO61266.1|1142607_1142736_-	biotin--acetyl-CoA-carboxylase ligase	NA	NA	NA	NA	NA
AUO61267.1|1142878_1144174_+|transposase	ISL3 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
AUO61268.1|1144281_1145088_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	25.1	1.3e-08
AUO61269.1|1145084_1145990_-	ABC transporter permease	NA	NA	NA	NA	NA
AUO61270.1|1146007_1147015_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUO61271.1|1147343_1147685_-	hypothetical protein	NA	NA	NA	NA	NA
AUO61272.1|1147694_1151321_+	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	24.7	1.5e-48
AUO61273.1|1151378_1155053_+	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	25.0	2.2e-63
1153971:1153985	attL	AATGAATTGATCATT	NA	NA	NA	NA
AUO61274.1|1155647_1156685_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUO61275.1|1156947_1158633_+	sugar phosphorylase	NA	NA	NA	NA	NA
AUO61276.1|1158646_1159930_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUO61277.1|1159999_1160869_+	sugar ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUO61278.1|1160865_1161702_+	sugar ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUO61279.1|1161727_1162795_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AUO61280.1|1162791_1163619_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61281.1|1163663_1164689_+	dehydrogenase	NA	NA	NA	NA	NA
AUO61282.1|1164685_1166869_+	family 65 glycosyl hydrolase	NA	NA	NA	NA	NA
AUO61283.1|1166868_1167999_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	51.6	1.6e-73
AUO61284.1|1167995_1168673_+	beta-phosphoglucomutase	NA	A0A1D8KNV9	Synechococcus_phage	23.2	1.6e-07
AUO61285.1|1168756_1169284_+	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA	NA
AUO61286.1|1169484_1170171_-	prepilin peptidase	NA	NA	NA	NA	NA
AUO61287.1|1170250_1171789_+	gluconokinase	NA	NA	NA	NA	NA
AUO61288.1|1171908_1172376_+	DNA starvation/stationary phase protection protein	NA	NA	NA	NA	NA
AUO61289.1|1172894_1173338_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
AUO61290.1|1173353_1173746_+	30S ribosomal protein S9	NA	NA	NA	NA	NA
AUO61291.1|1173834_1175001_-|integrase	site-specific integrase	integrase	A0A172LN96	Lactococcus_phage	34.0	3.3e-45
AUO61292.1|1175055_1175706_-	transcriptional regulator	NA	Q20DG0	Lactobacillus_phage	33.3	3.2e-05
AUO61293.1|1175780_1175984_+	transcriptional regulator	NA	NA	NA	NA	NA
1175793:1175807	attR	AATGATCAATTCATT	NA	NA	NA	NA
AUO61294.1|1175991_1176318_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61295.1|1176472_1177516_+	replication initiator protein A	NA	NA	NA	NA	NA
AUO61296.1|1177517_1177736_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61297.1|1177722_1180368_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61298.1|1180381_1180570_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61299.1|1180581_1181193_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61300.1|1181177_1182569_+	relaxase	NA	NA	NA	NA	NA
AUO61301.1|1182784_1183087_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61302.1|1183079_1183427_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61303.1|1183486_1184761_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	36.1	6.6e-55
>prophage 9
CP025754	Enterococcus faecium strain AALTL chromosome, complete genome	2817746	1196155	1231561	2817746	integrase,transposase	Bacillus_phage(33.33%)	36	1202240:1202255	1214376:1214391
AUO61315.1|1196155_1197619_-|transposase	DDE transposase	transposase	A0A1X9I5T2	Streptococcus_phage	47.8	2.2e-123
AUO61316.1|1197825_1198800_+	fructosamine deglycase	NA	NA	NA	NA	NA
AUO61317.1|1198781_1199243_+	PTS fructose transporter subunit IIA	NA	NA	NA	NA	NA
AUO61318.1|1199292_1199757_+	PTS mannose/fructose/sorbose transporter subunit IIB	NA	NA	NA	NA	NA
AUO61319.1|1199770_1200520_+	PTS mannose transporter subunit IICD	NA	NA	NA	NA	NA
AUO61320.1|1200519_1201350_+	PTS mannose transporter subunit IID	NA	NA	NA	NA	NA
AUO61321.1|1201349_1201997_+	phosphatase	NA	M1I5S4	Acanthocystis_turfacea_Chlorella_virus	27.4	4.5e-12
AUO61322.1|1202094_1202871_-	transcriptional regulator	NA	NA	NA	NA	NA
1202240:1202255	attL	ACCTTTTCTAAAATAA	NA	NA	NA	NA
AUO61323.1|1202967_1203096_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61324.1|1204420_1204831_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61325.1|1204911_1205532_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61326.1|1205861_1207088_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
AUO62892.1|1207159_1207318_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AUO61327.1|1208005_1208746_+	manganese ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	33.2	5.7e-19
AUO61328.1|1208837_1210025_-|transposase	IS110 family transposase	transposase	A0A0U3ULR1	Bacillus_phage	28.7	4.6e-26
AUO61329.1|1210346_1211189_+	manganese ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUO61330.1|1211462_1212611_-|transposase	transposase	transposase	A0A288TXV8	Enterococcus_phage	93.7	9.0e-205
AUO61331.1|1212627_1213032_-|transposase	IS200/IS605 family transposase ISEfa4	transposase	A0A286QN76	Streptococcus_phage	73.8	1.3e-52
AUO61332.1|1214041_1214275_+	iron-dependent repressor	NA	NA	NA	NA	NA
AUO61333.1|1214605_1215190_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
1214376:1214391	attR	TTATTTTAGAAAAGGT	NA	NA	NA	NA
AUO61334.1|1215320_1215989_+	cobalt transporter	NA	NA	NA	NA	NA
AUO61335.1|1215999_1217415_+	ABC transporter ATP-binding protein	NA	A0A1V0SGN0	Hokovirus	26.4	5.8e-20
AUO61336.1|1217432_1218002_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61337.1|1218111_1219866_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	24.8	1.3e-24
AUO61338.1|1219819_1221592_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.1	3.5e-30
AUO61339.1|1222114_1222384_+	30S ribosomal protein S14 1	NA	NA	NA	NA	NA
AUO61340.1|1222398_1222578_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
AUO61341.1|1222609_1222987_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61342.1|1223007_1223157_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
AUO61343.1|1223180_1224164_+	cobalamin biosynthesis protein CobW	NA	NA	NA	NA	NA
AUO61344.1|1224333_1225857_+	zinc ABC transporter substrate-binding protein AdcA	NA	NA	NA	NA	NA
AUO61345.1|1225880_1226120_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61346.1|1227304_1228921_+	cobalamin biosynthesis protein	NA	NA	NA	NA	NA
AUO61347.1|1228883_1229126_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61348.1|1231124_1231319_-	hypothetical protein	NA	NA	NA	NA	NA
AUO61349.1|1231228_1231561_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025754	Enterococcus faecium strain AALTL chromosome, complete genome	2817746	1254437	1271612	2817746		Streptococcus_phage(75.0%)	17	NA	NA
AUO61363.1|1254437_1256264_-	group II intron reverse transcriptase/maturase	NA	H7BVW2	unidentified_phage	26.8	3.7e-11
AUO61364.1|1256960_1258511_-	ATP/GTP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	72.7	6.7e-211
AUO61365.1|1258497_1258887_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	68.3	3.9e-43
AUO61366.1|1258946_1259450_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	59.9	9.2e-53
AUO61367.1|1259462_1259666_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	85.1	1.0e-23
AUO61368.1|1259790_1261701_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	29.8	7.1e-37
AUO61369.1|1262446_1262584_-	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
AUO61370.1|1262580_1263765_-	Cro/Cl family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	61.6	2.9e-142
AUO62893.1|1264023_1264278_-	hypothetical protein	NA	NA	NA	NA	NA
AUO61371.1|1265678_1266353_-	zeta toxin family protein	NA	NA	NA	NA	NA
AUO61372.1|1266430_1266670_-	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	80.3	2.1e-23
AUO61373.1|1266763_1268623_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	26.0	2.8e-30
AUO61374.1|1268741_1268972_-	hypothetical protein	NA	NA	NA	NA	NA
AUO61375.1|1269337_1270483_-	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	62.8	6.0e-132
AUO61376.1|1270565_1270910_-	damage-inducible protein J	NA	NA	NA	NA	NA
AUO61377.1|1270910_1271285_-	conjugal transfer protein	NA	A0A1S5SF96	Streptococcus_phage	66.1	2.4e-34
AUO61378.1|1271297_1271612_-	conjugal transfer protein	NA	A0A1S5SF38	Streptococcus_phage	53.4	1.0e-25
>prophage 11
CP025754	Enterococcus faecium strain AALTL chromosome, complete genome	2817746	1354142	1413098	2817746	tRNA,holin,transposase	Bacillus_phage(16.67%)	44	NA	NA
AUO61463.1|1354142_1355081_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	29.7	5.2e-09
AUO61464.1|1355080_1356439_+	16S rRNA (cytosine(967)-C(5))-methyltransferase	NA	NA	NA	NA	NA
AUO61465.1|1356451_1357192_+	protein phosphatase	NA	NA	NA	NA	NA
AUO61466.1|1357188_1359258_+	serine/threonine protein kinase	NA	A0A1V0SDC3	Indivirus	30.3	3.5e-21
AUO61467.1|1359422_1360322_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
AUO61468.1|1360334_1360985_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AUO61469.1|1360985_1361624_+	thiamine pyrophosphokinase	NA	NA	NA	NA	NA
AUO61470.1|1361778_1362633_+	rod shape-determining protein MreC	NA	NA	NA	NA	NA
AUO61471.1|1362636_1363146_+	rod shape-determining protein MreD	NA	NA	NA	NA	NA
AUO62898.1|1363439_1364939_+	hypothetical protein	NA	B5LJD6	Mycobacterium_phage	50.5	2.2e-17
AUO61472.1|1365071_1366367_-|transposase	ISL3 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
AUO61473.1|1366528_1368328_-	oligoendopeptidase	NA	NA	NA	NA	NA
AUO61474.1|1368450_1368957_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61475.1|1369002_1369758_+	transcriptional regulator	NA	NA	NA	NA	NA
AUO61476.1|1369835_1371236_-	hypothetical protein	NA	NA	NA	NA	NA
AUO61477.1|1371405_1372380_-	L-lactate dehydrogenase	NA	NA	NA	NA	NA
AUO61478.1|1372732_1373293_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AUO61479.1|1373309_1376831_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
AUO61480.1|1376845_1378441_+	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AUO61481.1|1378451_1378721_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61482.1|1378787_1379213_+	septum formation initiator	NA	NA	NA	NA	NA
AUO61483.1|1379258_1379729_+	RNA-binding protein S1	NA	NA	NA	NA	NA
AUO62899.1|1379848_1381294_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	E3T4I1	Cafeteria_roenbergensis_virus	24.5	6.8e-08
AUO61484.1|1381293_1381839_+	hypoxanthine phosphoribosyltransferase	NA	A0A1V0SEQ1	Hokovirus	25.3	4.1e-06
AUO61485.1|1381928_1384040_+	cell division protein FtsH	NA	C7U047	Ostreococcus_tauri_virus	50.3	9.1e-110
AUO61486.1|1384256_1385144_+	molecular chaperone Hsp33	NA	NA	NA	NA	NA
AUO61487.1|1385144_1386149_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AUO61488.1|1386259_1387756_+|tRNA	lysine--tRNA ligase	tRNA	A0A2K9KZX5	Tupanvirus	40.9	8.7e-91
AUO61489.1|1390171_1390369_-	hypothetical protein	NA	NA	NA	NA	NA
AUO61490.1|1395941_1397237_-|transposase	ISL3 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
AUO61491.1|1397591_1398785_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	72.0	1.3e-150
AUO61492.1|1398812_1400387_+	MFS transporter	NA	NA	NA	NA	NA
AUO61493.1|1400469_1401258_+	tributyrin esterase	NA	NA	NA	NA	NA
AUO61494.1|1401324_1401993_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUO61495.1|1402107_1403820_+	multidrug ABC transporter ATP-binding protein	NA	F2Y302	Organic_Lake_phycodnavirus	25.4	1.2e-14
AUO61496.1|1403822_1405595_+	multidrug ABC transporter permease	NA	W8CYL7	Bacillus_phage	29.4	1.2e-54
AUO61497.1|1405720_1406257_+|transposase	transposase	transposase	A0A1B1P776	Bacillus_phage	37.6	2.9e-20
AUO61498.1|1406253_1407060_+|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	52.5	9.2e-79
AUO61499.1|1407930_1409109_-|transposase	IS256 family transposase ISEf1	transposase	NA	NA	NA	NA
AUO61500.1|1409206_1409563_-	hypothetical protein	NA	U4KJ82	Streptococcus_phage	42.2	9.2e-15
AUO61501.1|1409634_1410567_-	hypothetical protein	NA	M1NRY5	Streptococcus_phage	53.8	1.8e-57
AUO61502.1|1410769_1411729_+|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	26.8	2.2e-10
AUO61503.1|1411861_1412068_+|holin	holin	holin	NA	NA	NA	NA
AUO61504.1|1412078_1413098_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	66.1	2.4e-60
>prophage 12
CP025754	Enterococcus faecium strain AALTL chromosome, complete genome	2817746	1571074	1618838	2817746	tRNA,transposase,bacteriocin	Bacillus_phage(20.0%)	52	NA	NA
AUO61629.1|1571074_1571638_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
AUO61630.1|1571686_1572346_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AUO61631.1|1572365_1574954_+	exodeoxyribonuclease V subunit alpha	NA	A0A218KCE8	Bacillus_phage	29.2	8.6e-62
AUO61632.1|1575056_1575284_+	cold-shock protein	NA	NA	NA	NA	NA
AUO61633.1|1575393_1575987_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AUO62908.1|1576018_1577113_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AUO61634.1|1578152_1579298_+	antibiotic ABC transporter permease	NA	NA	NA	NA	NA
AUO61635.1|1579284_1580457_+	antibiotic ABC transporter permease	NA	NA	NA	NA	NA
AUO61636.1|1580555_1581521_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AUO61637.1|1582117_1582621_+	hypothetical protein	NA	E7DN70	Pneumococcus_phage	34.3	3.4e-07
AUO61638.1|1582676_1583321_-	hypothetical protein	NA	NA	NA	NA	NA
AUO61639.1|1583482_1583635_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
AUO61640.1|1583658_1583829_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AUO61641.1|1583929_1584475_+	transcriptional antiterminator NusG	NA	NA	NA	NA	NA
AUO62909.1|1584533_1585439_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61642.1|1585611_1586631_+	lactate oxidase	NA	NA	NA	NA	NA
AUO61643.1|1586721_1587594_-	L-serine dehydratase, iron-sulfur-dependent subunit alpha	NA	NA	NA	NA	NA
AUO61644.1|1587606_1588275_-	L-serine dehydratase, iron-sulfur-dependent subunit beta	NA	NA	NA	NA	NA
AUO61645.1|1588617_1589040_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AUO61646.1|1589143_1589833_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AUO61647.1|1590242_1590746_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AUO61648.1|1590798_1591167_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AUO61649.1|1591272_1591962_+	TVP38/TMEM64 family protein	NA	NA	NA	NA	NA
AUO61650.1|1592043_1593246_+	MFS transporter	NA	NA	NA	NA	NA
AUO61651.1|1593436_1595014_-	multidrug ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	28.0	4.5e-45
AUO61652.1|1595202_1595904_+	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
AUO61653.1|1596157_1596871_+	magnesium transporter MgtC	NA	G3MA03	Bacillus_virus	43.7	6.5e-20
AUO61654.1|1597179_1598319_+	AI-2E family transporter	NA	NA	NA	NA	NA
AUO61655.1|1598407_1599373_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	70.4	3.4e-128
AUO61656.1|1599422_1601582_-	ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	63.0	2.5e-264
AUO61657.1|1601622_1601784_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61658.1|1601740_1601965_-	NrdH-redoxin	NA	A0A0M7REK7	Lactobacillus_phage	42.7	1.7e-11
AUO61659.1|1602086_1602221_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61660.1|1602323_1602839_+	ferrous iron transport protein A	NA	NA	NA	NA	NA
AUO61661.1|1602835_1604968_+	ferrous iron transport protein B	NA	NA	NA	NA	NA
AUO61662.1|1604969_1605104_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61663.1|1605058_1605250_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61664.1|1605197_1605842_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUO61665.1|1606028_1607222_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.0	1.2e-29
AUO61666.1|1607214_1608942_+	glycine/betaine ABC transporter permease	NA	NA	NA	NA	NA
AUO61667.1|1608961_1609147_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61668.1|1609335_1609533_+	enterocin	NA	NA	NA	NA	NA
AUO61669.1|1609507_1609846_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
AUO61670.1|1609949_1610096_+	enterocin induction factor	NA	NA	NA	NA	NA
AUO61671.1|1610135_1611419_+	ATP-binding protein	NA	NA	NA	NA	NA
AUO61672.1|1611737_1613057_-|transposase	IS1380 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	82.7	6.3e-210
AUO61673.1|1613180_1613870_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AUO61674.1|1614388_1614580_-	hypothetical protein	NA	NA	NA	NA	NA
AUO61675.1|1614572_1614788_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
AUO61676.1|1614806_1615043_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
AUO62910.1|1615303_1617454_+|bacteriocin	bacteriocin cleavage/export ABC transporter	bacteriocin	W8CYL7	Bacillus_phage	27.8	7.0e-41
AUO62911.1|1617422_1618838_+|bacteriocin	bacteriocin secretion accessory protein	bacteriocin	NA	NA	NA	NA
>prophage 13
CP025754	Enterococcus faecium strain AALTL chromosome, complete genome	2817746	1802935	1844461	2817746	head,holin,portal,tail,tRNA	Enterococcus_phage(27.27%)	56	NA	NA
AUO61856.1|1802935_1804147_+|tRNA	tRNA 4-thiouridine(8) synthase ThiI	tRNA	NA	NA	NA	NA
AUO61857.1|1804719_1805367_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
AUO61858.1|1805759_1808405_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	42.9	4.0e-163
AUO61859.1|1808580_1808715_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61860.1|1808699_1810028_+	tetrahydrofolate synthase	NA	NA	NA	NA	NA
AUO61861.1|1810017_1810671_+	HAD family hydrolase	NA	NA	NA	NA	NA
AUO61862.1|1810725_1811397_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61863.1|1811291_1812644_-	preprotein translocase subunit TatB	NA	D2IZV7	Enterococcus_phage	55.3	1.7e-133
AUO61864.1|1812709_1813999_-	hypothetical protein	NA	M1NRY5	Streptococcus_phage	74.0	5.6e-46
AUO61865.1|1814085_1814790_-	DNA-binding protein	NA	D7RWF2	Brochothrix_phage	42.4	6.2e-39
AUO61866.1|1814989_1815256_+	transcriptional regulator	NA	A0A1W6JP54	Staphylococcus_phage	52.7	5.4e-12
AUO61867.1|1815423_1815654_-	hypothetical protein	NA	E8ZD70	Streptococcus_phage	49.3	4.4e-10
AUO61868.1|1815692_1815881_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61869.1|1816189_1816414_-	hypothetical protein	NA	E8ZD70	Streptococcus_phage	81.1	2.2e-27
AUO61870.1|1816680_1817016_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61871.1|1817248_1818190_+	endonuclease	NA	D2IZK1	Enterococcus_phage	78.9	2.7e-146
AUO61872.1|1818191_1819082_+	recombinase RecT	NA	D2IYT9	Enterococcus_phage	84.5	6.2e-137
AUO61873.1|1819124_1819925_+	replication protein	NA	B4XYS6	Lactobacillus_phage	54.5	8.9e-58
AUO61874.1|1819939_1820791_+	DNA replication protein DnaC	NA	A0A0P0I3L9	Lactobacillus_phage	30.2	3.0e-27
AUO61875.1|1820787_1821147_+	hypothetical protein	NA	A0A1P8BKR1	Lactococcus_phage	47.5	6.8e-18
AUO61876.1|1821161_1821323_+	antitoxin	NA	NA	NA	NA	NA
AUO61877.1|1821319_1821646_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61878.1|1821642_1822458_+	hypothetical protein	NA	A0A288TXV9	Enterococcus_phage	69.4	1.8e-82
AUO61879.1|1822596_1822908_+	hypothetical protein	NA	A0A0D3MVS9	Staphylococcus_phage	58.0	5.3e-27
AUO61880.1|1822904_1823135_+	hypothetical protein	NA	A0A0S2MYD2	Enterococcus_phage	50.7	8.8e-11
AUO61881.1|1823141_1823345_+	toxin PIN	NA	NA	NA	NA	NA
AUO61882.1|1823341_1823638_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61883.1|1823714_1824128_+	autolysin	NA	C9E2P5	Enterococcus_phage	80.3	2.5e-56
AUO61884.1|1824140_1824527_+	hypothetical protein	NA	O34053	Streptococcus_phage	55.2	1.9e-29
AUO61885.1|1825077_1825302_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61886.1|1825319_1825748_+	hypothetical protein	NA	A0A1P8BMH5	Lactococcus_phage	63.1	2.6e-40
AUO61887.1|1825725_1827144_+	hypothetical protein	NA	A0A090EUA8	Clostridium_phage	51.5	2.5e-124
AUO61888.1|1827155_1828691_+|portal	portal protein	portal	NA	NA	NA	NA
AUO62916.1|1828770_1829649_+|head	phage head morphogenesis protein	head	NA	NA	NA	NA
AUO61889.1|1829650_1829968_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61890.1|1829906_1830098_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61891.1|1830016_1830718_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61892.1|1830732_1831623_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61893.1|1831645_1831861_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61894.1|1831872_1832214_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61895.1|1832213_1832585_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61896.1|1832577_1832973_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61897.1|1832974_1833352_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61898.1|1833352_1833961_+|tail	phage tail protein	tail	NA	NA	NA	NA
AUO61899.1|1833960_1834302_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62917.1|1834543_1837333_+|tail	phage tail tape measure protein	tail	D7RWD8	Brochothrix_phage	40.2	8.4e-71
AUO61900.1|1837322_1838063_+|tail	phage tail protein	tail	NA	NA	NA	NA
AUO61901.1|1838059_1840822_+	hypothetical protein	NA	Q9AZX5	Lactococcus_phage	39.1	6.0e-138
AUO61902.1|1840834_1841743_+	hypothetical protein	NA	A0A1P8BLW0	Lactococcus_phage	25.2	7.8e-10
AUO61903.1|1841742_1842360_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61904.1|1842363_1842813_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61905.1|1842812_1843337_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61906.1|1843364_1843772_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61907.1|1843771_1843909_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61908.1|1843946_1844240_+	hypothetical protein	NA	NA	NA	NA	NA
AUO61909.1|1844236_1844461_+|holin	holin	holin	NA	NA	NA	NA
>prophage 14
CP025754	Enterococcus faecium strain AALTL chromosome, complete genome	2817746	2061577	2221624	2817746	tRNA,transposase,protease	Streptococcus_phage(23.4%)	167	NA	NA
AUO62121.1|2061577_2062537_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
AUO62122.1|2063158_2063341_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62123.1|2063341_2063542_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62124.1|2063720_2064671_-	OxaA precursor	NA	NA	NA	NA	NA
AUO62125.1|2064849_2065041_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62126.1|2065108_2065384_-	acylphosphatase	NA	NA	NA	NA	NA
AUO62127.1|2065491_2066256_+	23S rRNA methyltransferase	NA	A0A2D1A6G0	Rhodococcus_phage	26.1	1.7e-05
AUO62128.1|2066378_2066882_+	hydrolase	NA	NA	NA	NA	NA
AUO62129.1|2067014_2067218_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62130.1|2067289_2067466_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62131.1|2067513_2067936_+	elongation factor G-binding protein	NA	NA	NA	NA	NA
AUO62132.1|2068098_2069367_+	voltage-gated chloride channel protein	NA	A0A1X9I5Z9	Streptococcus_phage	31.1	2.2e-42
AUO62133.1|2069393_2070593_-	hypothetical protein	NA	NA	NA	NA	NA
AUO62134.1|2070711_2072019_-	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA	NA
AUO62135.1|2072134_2072257_-	hypothetical protein	NA	NA	NA	NA	NA
AUO62136.1|2072489_2073608_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62137.1|2074059_2075355_-|transposase	ISL3 family transposase ISEfa5	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
AUO62138.1|2075584_2075953_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62139.1|2075955_2076120_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62140.1|2076404_2076605_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	74.2	2.5e-22
AUO62141.1|2076751_2079541_+	DNA polymerase III subunit epsilon	NA	A0A1X9I5C8	Streptococcus_phage	30.9	1.1e-89
AUO62142.1|2079587_2080115_+	peptidase	NA	NA	NA	NA	NA
AUO62143.1|2080126_2081326_+	aspartate aminotransferase	NA	NA	NA	NA	NA
AUO62144.1|2081365_2082664_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.3	1.2e-59
AUO62145.1|2083716_2084391_+	GDSL family lipase	NA	NA	NA	NA	NA
AUO62146.1|2084387_2084729_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62147.1|2084758_2085118_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62148.1|2085377_2085500_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62149.1|2085641_2087723_+	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	35.6	2.4e-115
AUO62150.1|2088033_2089500_+	transporter	NA	NA	NA	NA	NA
AUO62151.1|2089564_2089693_-	alpha-mannosidase	NA	NA	NA	NA	NA
AUO62152.1|2090114_2090654_+	topology modulation protein	NA	A0A097BYE2	Leuconostoc_phage	34.5	3.8e-20
AUO62153.1|2090727_2091168_+	penicillinase repressor	NA	NA	NA	NA	NA
AUO62154.1|2091180_2091390_+	copper-binding protein	NA	NA	NA	NA	NA
AUO62155.1|2091389_2093576_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	38.6	5.3e-121
AUO62156.1|2093595_2095767_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	32.3	5.0e-71
AUO62157.1|2095940_2097158_-|transposase	ISL3 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	1.2e-08
AUO62158.1|2099561_2100503_-	hypothetical protein	NA	NA	NA	NA	NA
AUO62159.1|2100647_2101496_-	AAA family ATPase	NA	NA	NA	NA	NA
AUO62160.1|2101849_2102662_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62161.1|2102815_2103139_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62162.1|2103212_2103782_+	prevent-host-death protein	NA	NA	NA	NA	NA
AUO62163.1|2103957_2104224_-	recombinase	NA	A0A0P0I3D2	Lactobacillus_phage	56.5	1.4e-07
AUO62164.1|2104218_2104911_+	N-acetylmuramoyl-L-alanine amidase	NA	Q9MCC6	Lactobacillus_phage	43.4	4.0e-30
AUO62165.1|2104950_2105757_-|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	52.5	1.2e-78
AUO62166.1|2105753_2106290_-|transposase	transposase	transposase	A0A1B1P776	Bacillus_phage	37.6	2.9e-20
AUO62167.1|2106394_2106685_+	hypothetical protein	NA	A0A0C5AJ30	Paenibacillus_phage	61.5	1.5e-23
AUO62168.1|2106720_2107557_+|transposase	transposase	transposase	A0A2I7SC85	Paenibacillus_phage	53.8	8.9e-77
AUO62169.1|2107858_2108677_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
AUO62170.1|2108928_2110107_-|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
AUO62171.1|2110345_2110777_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62172.1|2111008_2111266_-	hypothetical protein	NA	NA	NA	NA	NA
AUO62173.1|2111551_2112802_-|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
AUO62174.1|2113211_2114186_+	choloylglycine hydrolase	NA	M1HVK5	Paramecium_bursaria_Chlorella_virus	31.8	7.1e-25
AUO62175.1|2114308_2115268_-|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	26.8	2.2e-10
AUO62925.1|2116069_2116327_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62176.1|2116417_2116783_-	hypothetical protein	NA	NA	NA	NA	NA
AUO62177.1|2116990_2117473_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62178.1|2117669_2118560_+	phosphate ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUO62179.1|2118846_2120121_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	35.9	9.5e-54
AUO62180.1|2120393_2122865_+	ATPase P	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	28.8	7.0e-45
AUO62181.1|2122967_2124704_-	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	34.1	1.2e-27
AUO62182.1|2124700_2125405_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	36.2	1.4e-38
AUO62183.1|2125508_2126039_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62184.1|2125998_2126337_+	transcriptional regulator	NA	NA	NA	NA	NA
AUO62185.1|2126357_2127776_+	signal recognition particle protein	NA	NA	NA	NA	NA
AUO62186.1|2127887_2128466_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AUO62187.1|2128469_2128991_+	dihydrofolate reductase	NA	NA	NA	NA	NA
AUO62188.1|2129069_2129624_-	flavin reductase	NA	A0A2P0ZL77	Lactobacillus_phage	29.3	2.3e-12
AUO62189.1|2129876_2130152_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AUO62190.1|2130163_2130415_+	RNA-binding protein	NA	NA	NA	NA	NA
AUO62191.1|2130485_2131331_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62192.1|2131500_2132022_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AUO62193.1|2132011_2132773_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AUO62194.1|2132908_2133256_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
AUO62195.1|2133291_2133477_-	hypothetical protein	NA	NA	NA	NA	NA
AUO62196.1|2133513_2133807_+	transcriptional regulator	NA	NA	NA	NA	NA
AUO62197.1|2133894_2134008_-|protease	CAAX protease	protease	NA	NA	NA	NA
AUO62198.1|2134664_2135852_+|transposase	IS256 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	46.3	8.2e-92
AUO62199.1|2136123_2138451_+	peptidase	NA	NA	NA	NA	NA
AUO62200.1|2138447_2138906_+	cell wall anchor protein	NA	NA	NA	NA	NA
AUO62201.1|2138936_2139950_+	collagen-binding protein	NA	NA	NA	NA	NA
AUO62926.1|2140560_2141376_+	peptidase	NA	NA	NA	NA	NA
AUO62202.1|2141578_2142754_+	class C sortase	NA	NA	NA	NA	NA
AUO62203.1|2142750_2142948_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62927.1|2142915_2143566_-	hypothetical protein	NA	NA	NA	NA	NA
AUO62204.1|2143959_2144382_+	DNA-binding protein	NA	NA	NA	NA	NA
AUO62205.1|2144547_2145741_-	MFS transporter	NA	NA	NA	NA	NA
AUO62206.1|2145964_2146342_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AUO62207.1|2146362_2146668_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUO62208.1|2146801_2147245_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUO62209.1|2147506_2148322_+	sugar ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUO62210.1|2148331_2148994_+	DUF624 domain-containing protein	NA	NA	NA	NA	NA
AUO62211.1|2149198_2150863_+	acetolactate synthase	NA	NA	NA	NA	NA
AUO62212.1|2150875_2151586_+	acetolactate decarboxylase	NA	NA	NA	NA	NA
AUO62213.1|2151715_2152213_+	GAF domain-containing protein	NA	NA	NA	NA	NA
AUO62214.1|2152397_2152658_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62215.1|2152834_2152963_-	hypothetical protein	NA	NA	NA	NA	NA
AUO62216.1|2153019_2153259_-	hypothetical protein	NA	NA	NA	NA	NA
AUO62217.1|2153595_2154774_-|transposase	IS256 family transposase ISEf1	transposase	NA	NA	NA	NA
AUO62218.1|2155212_2155515_-	hypothetical protein	NA	NA	NA	NA	NA
AUO62219.1|2156271_2157045_-	HAD family hydrolase	NA	NA	NA	NA	NA
AUO62220.1|2157188_2157539_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62221.1|2157519_2158236_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	35.7	1.0e-33
AUO62222.1|2158235_2159684_+	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.3	1.7e-19
AUO62223.1|2159753_2160263_-	hypothetical protein	NA	NA	NA	NA	NA
AUO62224.1|2160252_2160978_-	hypothetical protein	NA	NA	NA	NA	NA
AUO62225.1|2161200_2163321_-	phosphoglycerol transferase	NA	W6LM83	Streptococcus_phage	58.0	8.2e-220
AUO62226.1|2163550_2164729_+	SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	48.9	3.9e-102
AUO62227.1|2164744_2165503_+	3-dehydroquinase	NA	W6LP76	Streptococcus_phage	36.4	1.9e-25
AUO62228.1|2165525_2166011_+|tRNA	aminoacyl-tRNA deacylase	tRNA	NA	NA	NA	NA
AUO62229.1|2166081_2167335_-	hypothetical protein	NA	A0A2H4PQX1	Staphylococcus_phage	55.3	7.7e-24
AUO62230.1|2167451_2168801_+	glutamate dehydrogenase	NA	NA	NA	NA	NA
AUO62231.1|2168912_2170259_+	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AUO62232.1|2170477_2171770_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	38.9	3.2e-57
AUO62233.1|2172073_2172460_-	hypothetical protein	NA	NA	NA	NA	NA
AUO62234.1|2172508_2173417_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
AUO62235.1|2173629_2174589_+|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	27.2	7.5e-11
AUO62236.1|2174841_2175000_-	hypothetical protein	NA	NA	NA	NA	NA
AUO62237.1|2175307_2175451_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62238.1|2175452_2175665_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62239.1|2175942_2177742_-	glycerophosphodiester phosphodiesterase	NA	I6XE30	Staphylococcus_phage	26.5	5.3e-10
AUO62240.1|2177865_2178462_-	TVP38/TMEM64 family protein	NA	M1Q152	Streptococcus_phage	41.7	8.7e-34
AUO62241.1|2178651_2179611_-|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	26.8	2.2e-10
AUO62242.1|2179876_2180221_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AUO62243.1|2180732_2181083_-	hypothetical protein	NA	NA	NA	NA	NA
AUO62244.1|2181048_2182380_-	hypothetical protein	NA	NA	NA	NA	NA
AUO62245.1|2182634_2183201_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUO62246.1|2183766_2184741_+	choloylglycine hydrolase	NA	M1H001	Paramecium_bursaria_Chlorella_virus	29.7	3.0e-23
AUO62247.1|2185065_2186961_+	asparagine synthetase B	NA	F2Y2L7	Organic_Lake_phycodnavirus	26.2	6.0e-20
AUO62248.1|2187155_2187602_-	hypothetical protein	NA	NA	NA	NA	NA
AUO62249.1|2187829_2187979_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
AUO62250.1|2188066_2188585_+	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	39.1	7.1e-24
AUO62251.1|2188661_2189654_-	ferrichrome ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUO62252.1|2189756_2190590_+	ABC transporter ATP-binding protein	NA	A0A1V0SJ29	Klosneuvirus	32.1	1.1e-13
AUO62928.1|2190643_2191576_+	ferrichrome ABC transporter permease	NA	NA	NA	NA	NA
AUO62253.1|2191572_2192577_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AUO62254.1|2192708_2193251_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AUO62255.1|2193252_2193969_+|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
AUO62256.1|2193989_2194202_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62257.1|2194201_2195164_+	glucokinase	NA	NA	NA	NA	NA
AUO62258.1|2195181_2195577_+	sulfurtransferase	NA	NA	NA	NA	NA
AUO62259.1|2195739_2196105_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUO62260.1|2196095_2197913_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AUO62261.1|2197974_2198142_-	DUF3042 domain-containing protein	NA	NA	NA	NA	NA
AUO62929.1|2198245_2199379_+	UDP-glucose 4-epimerase GalE	NA	A0A1V0SG19	Hokovirus	36.8	2.4e-48
AUO62262.1|2199390_2200875_+	galactose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
AUO62263.1|2200898_2201879_+	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	28.9	5.8e-19
AUO62264.1|2201925_2202792_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
AUO62265.1|2202775_2203318_+	ribosomal-protein-alanine N-acetyltransferase RimI	NA	NA	NA	NA	NA
AUO62266.1|2203324_2203789_+	ribosomal-protein-alanine N-acetyltransferase RimI	NA	NA	NA	NA	NA
AUO62267.1|2203785_2204802_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	41.0	5.4e-60
AUO62268.1|2205465_2206761_-|transposase	ISL3 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	5.0e-10
AUO62269.1|2206932_2207634_-	cyclic nucleotide-binding protein	NA	NA	NA	NA	NA
AUO62270.1|2208094_2209324_+	arginine deiminase	NA	NA	NA	NA	NA
AUO62271.1|2209414_2210434_+	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
AUO62272.1|2210548_2211496_+	carbamate kinase	NA	NA	NA	NA	NA
AUO62273.1|2211915_2213607_+|tRNA	arginine--tRNA ligase	tRNA	A0A2I2L3K1	Orpheovirus	32.6	2.9e-74
AUO62274.1|2214059_2214605_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
AUO62275.1|2214608_2214737_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
AUO62930.1|2214729_2215854_-	2-aminoethylphosphonate--pyruvate transaminase	NA	NA	NA	NA	NA
AUO62276.1|2216037_2216517_-	ArgR family transcriptional regulator	NA	NA	NA	NA	NA
AUO62277.1|2216875_2217658_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
AUO62278.1|2217756_2218638_+	translation elongation factor Ts	NA	NA	NA	NA	NA
AUO62279.1|2218773_2219496_+	UMP kinase	NA	NA	NA	NA	NA
AUO62280.1|2219498_2220056_+	ribosome-recycling factor	NA	NA	NA	NA	NA
AUO62281.1|2220373_2221624_-|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
>prophage 15
CP025754	Enterococcus faecium strain AALTL chromosome, complete genome	2817746	2374150	2410058	2817746	protease,integrase,transposase	Synechococcus_phage(30.0%)	44	2367518:2367533	2394890:2394905
2367518:2367533	attL	AAAATAATCCTGTTCT	NA	NA	NA	NA
AUO62421.1|2374150_2375278_-|integrase	site-specific integrase	integrase	A0A2I7SCV1	Paenibacillus_phage	55.5	1.8e-109
AUO62422.1|2375334_2376288_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
AUO62423.1|2376443_2377622_-|transposase	IS256 family transposase ISEf1	transposase	NA	NA	NA	NA
AUO62424.1|2377661_2377844_-	hypothetical protein	NA	NA	NA	NA	NA
AUO62934.1|2377867_2378158_-	hypothetical protein	NA	NA	NA	NA	NA
AUO62933.1|2378275_2378410_-	hypothetical protein	NA	NA	NA	NA	NA
AUO62425.1|2378672_2379086_-	heat-shock protein Hsp20	NA	A0A1B2LRT2	Wolbachia_phage	31.5	2.1e-07
AUO62426.1|2379541_2380027_-	hypothetical protein	NA	NA	NA	NA	NA
AUO62427.1|2380165_2380411_-	DUF378 domain-containing protein	NA	NA	NA	NA	NA
AUO62428.1|2380603_2381404_+	sorbitol-6-phosphate 2-dehydrogenase	NA	Q06VL0	Trichoplusia_ni_ascovirus	26.2	2.6e-09
AUO62429.1|2381422_2383291_+	transcription antiterminator BglG	NA	NA	NA	NA	NA
AUO62430.1|2383283_2383775_+	DeoR family transcriptional regulator	NA	NA	NA	NA	NA
AUO62431.1|2383762_2384317_+	PTS glucitol/sorbitol transporter subunit IIC	NA	NA	NA	NA	NA
AUO62432.1|2384334_2385330_+	PTS sorbitol transporter subunit IIB	NA	NA	NA	NA	NA
AUO62433.1|2385471_2386722_-|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
AUO62434.1|2387130_2387529_+	PTS sorbitol transporter subunit IIA	NA	NA	NA	NA	NA
AUO62935.1|2387512_2388208_+	transaldolase	NA	E3SKN5	Synechococcus_phage	31.5	1.0e-22
AUO62435.1|2388791_2389679_-	rotamase	NA	NA	NA	NA	NA
AUO62436.1|2389863_2390703_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AUO62437.1|2390898_2391873_+	peptidase	NA	NA	NA	NA	NA
AUO62438.1|2391921_2392056_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62439.1|2392170_2392527_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62440.1|2392529_2393687_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62441.1|2393712_2394153_-	transcriptional regulator	NA	NA	NA	NA	NA
AUO62442.1|2394312_2394819_+	cysteine hydrolase	NA	NA	NA	NA	NA
AUO62443.1|2394986_2396900_+	peptidase	NA	NA	NA	NA	NA
2394890:2394905	attR	AAAATAATCCTGTTCT	NA	NA	NA	NA
AUO62444.1|2396904_2397906_+	lipase	NA	M1PGN2	Moumouvirus	31.8	2.5e-09
AUO62445.1|2398107_2398314_-	hypothetical protein	NA	NA	NA	NA	NA
AUO62446.1|2398959_2399808_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AUO62447.1|2399806_2399953_+	phosphogluconate dehydrogenase	NA	NA	NA	NA	NA
AUO62448.1|2399970_2400873_+	6-phosphogluconate dehydrogenase (decarboxylating)	NA	A0A1D8KGX1	Synechococcus_phage	35.3	3.3e-53
AUO62449.1|2400865_2401876_+	hydroxyacid dehydrogenase	NA	M1H9J0	Paramecium_bursaria_Chlorella_virus	29.0	2.8e-24
AUO62450.1|2401872_2402157_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AUO62451.1|2402189_2402987_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AUO62452.1|2403000_2403834_+	PTS sorbose transporter subunit IIC	NA	NA	NA	NA	NA
AUO62453.1|2403851_2404709_+	PTS mannose transporter subunit IID	NA	NA	NA	NA	NA
AUO62454.1|2404730_2405240_+	PTS sorbose transporter subunit IIB	NA	NA	NA	NA	NA
AUO62455.1|2405276_2405678_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62456.1|2405720_2406143_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62457.1|2406176_2406620_+	PTS fructose transporter subunit IIA	NA	NA	NA	NA	NA
AUO62458.1|2406603_2407722_+	mannonate dehydratase	NA	NA	NA	NA	NA
AUO62459.1|2407714_2408428_+	haloacid dehalogenase	NA	A0A1D8KPI1	Synechococcus_phage	23.0	5.4e-06
AUO62460.1|2408461_2408584_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62461.1|2408756_2410058_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	33.6	1.6e-48
>prophage 16
CP025754	Enterococcus faecium strain AALTL chromosome, complete genome	2817746	2706847	2715908	2817746		Synechococcus_phage(16.67%)	9	NA	NA
AUO62754.1|2706847_2707426_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	37.4	1.3e-26
AUO62755.1|2707422_2708475_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.7	2.7e-62
AUO62756.1|2708497_2709937_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.1	5.3e-53
AUO62757.1|2709921_2712144_-	phosphoribosylformylglycinamidine synthase II	NA	A6N228	Microbacterium_phage	41.3	1.9e-150
AUO62758.1|2712144_2712846_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
AUO62759.1|2712817_2713075_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AUO62760.1|2713071_2713800_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	41.4	4.6e-45
AUO62761.1|2714055_2714433_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62762.1|2714612_2715908_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.1	4.5e-19
>prophage 17
CP025754	Enterococcus faecium strain AALTL chromosome, complete genome	2817746	2743777	2782951	2817746	transposase,protease	Bacillus_virus(25.0%)	39	NA	NA
AUO62791.1|2743777_2745073_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	37.5	3.9e-55
AUO62792.1|2745061_2745544_-	hypothetical protein	NA	NA	NA	NA	NA
AUO62793.1|2745703_2746882_-|transposase	IS256 family transposase ISEf1	transposase	NA	NA	NA	NA
AUO62794.1|2746965_2747292_-	hypothetical protein	NA	NA	NA	NA	NA
AUO62795.1|2747491_2747734_+	glyoxalase/bleomycin resistance/extradiol dioxygenase family protein	NA	NA	NA	NA	NA
AUO62796.1|2747911_2748142_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62797.1|2748005_2748296_-	hypothetical protein	NA	NA	NA	NA	NA
AUO62798.1|2749589_2750213_+	peptidase M23	NA	A0A249XZV3	Enterococcus_phage	56.4	3.9e-37
AUO62799.1|2750296_2751019_-	hydrolase TatD	NA	NA	NA	NA	NA
AUO62800.1|2751008_2751746_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUO62801.1|2751757_2752813_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUO62802.1|2752764_2753508_-	ABC transporter permease	NA	NA	NA	NA	NA
AUO62803.1|2753748_2755071_-	glutathione reductase	NA	NA	NA	NA	NA
AUO62804.1|2755057_2756023_-	proline/glycine betaine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.9	2.0e-27
AUO62805.1|2756019_2757558_-	glycine/betaine ABC transporter permease	NA	NA	NA	NA	NA
AUO62806.1|2757973_2758261_-	hypothetical protein	NA	NA	NA	NA	NA
AUO62807.1|2758394_2759063_+	membrane protein	NA	NA	NA	NA	NA
AUO62808.1|2759280_2759523_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62809.1|2759512_2759866_+|transposase	transposase	transposase	NA	NA	NA	NA
AUO62810.1|2759967_2761515_+|transposase	transposase	transposase	NA	NA	NA	NA
AUO62811.1|2761706_2762447_-	hypothetical protein	NA	NA	NA	NA	NA
AUO62812.1|2762576_2763524_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUO62813.1|2763652_2764417_-	esterase	NA	NA	NA	NA	NA
AUO62814.1|2764420_2764810_-	hypothetical protein	NA	NA	NA	NA	NA
AUO62815.1|2764926_2765487_+	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
AUO62816.1|2765634_2766267_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62817.1|2766400_2766526_-	hypothetical protein	NA	NA	NA	NA	NA
AUO62818.1|2766659_2767553_-	hypothetical protein	NA	NA	NA	NA	NA
AUO62819.1|2767734_2768661_-	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
AUO62820.1|2768745_2769507_-	pyruvate formate lyase-activating protein	NA	NA	NA	NA	NA
AUO62821.1|2769750_2771982_-	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	42.5	2.4e-169
AUO62822.1|2772258_2774709_-	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	31.6	9.2e-98
AUO62823.1|2774720_2776799_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	41.3	1.9e-115
AUO62824.1|2776931_2777375_-	CoA-binding protein	NA	NA	NA	NA	NA
AUO62825.1|2777492_2778131_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AUO62826.1|2778311_2779607_+|transposase	ISL3 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
AUO62827.1|2779784_2780666_-	aldose epimerase	NA	NA	NA	NA	NA
AUO62828.1|2780741_2781533_-	transcriptional repressor CodY	NA	NA	NA	NA	NA
AUO62829.1|2781550_2782951_-|protease	ATP-dependent protease ATP-binding subunit HslU	protease	A0A173GFL6	Erwinia_phage	28.8	1.7e-43
>prophage 1
CP025755	Enterococcus faecium strain AALTL plasmid pEFA-790c, complete sequence	35515	892	21309	35515	transposase	Streptococcus_phage(61.11%)	24	NA	NA
AUO62949.1|892_1681_+	chromosome partitioning protein ParA	NA	H7BUL8	unidentified_phage	35.7	4.7e-27
AUO62950.1|1667_1994_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62951.1|2342_3383_+	replication protein RepA	NA	NA	NA	NA	NA
AUO62952.1|3998_4685_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	98.7	6.5e-126
AUO62953.1|4824_4908_+	23S rRNA methylase leader peptide	NA	NA	NA	NA	NA
AUO62954.1|5032_5770_+	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.2	7.0e-134
AUO62987.1|5915_6200_+	topoisomerase	NA	A0A1X9I6W8	Streptococcus_phage	98.8	2.8e-43
AUO62955.1|6362_7037_+|transposase	transposase	transposase	A0A146ICT8	Staphylococcus_phage	41.0	7.7e-47
AUO62956.1|7063_7309_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62957.1|7411_8281_+	hypothetical protein	NA	A0A1X9I6C9	Streptococcus_phage	95.8	4.3e-159
AUO62958.1|8261_8996_+	methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	100.0	1.5e-141
AUO62959.1|9080_9941_+	aminoglycoside nucleotidyltransferase ANT6	NA	E4ZFP8	Streptococcus_phage	99.6	5.1e-168
AUO62960.1|9937_10480_+	streptothricin N-acetyltransferase Sat4	NA	A0A1B0RXL7	Streptococcus_phage	100.0	8.9e-94
AUO62961.1|10572_11367_+	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
AUO62962.1|11642_12185_+	transcriptional regulator	NA	A0A1B0RXM1	Streptococcus_phage	98.3	2.4e-91
AUO62963.1|12214_12901_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
AUO62964.1|12948_13164_-	hypothetical protein	NA	NA	NA	NA	NA
AUO62965.1|13332_13518_+	hypothetical protein	NA	NA	NA	NA	NA
AUO62966.1|13697_15857_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	35.8	2.4e-126
AUO62967.1|16002_16578_+|transposase	transposase	transposase	A0A1V0E035	Clostridioides_phage	34.8	9.0e-20
AUO62968.1|16791_17487_+	VanA-type vancomycin resistance DNA-binding response regulator VanR	NA	W8CYM9	Bacillus_phage	37.7	4.9e-36
AUO62969.1|17464_18619_+	VanA-type vancomycin resistance histidine kinase VanS	NA	W8CYF6	Bacillus_phage	23.3	1.5e-13
AUO62970.1|18716_20009_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	38.9	3.2e-57
AUO62971.1|20340_21309_+	D-lactate dehydrogenase VanH-A	NA	M1HUW8	Acanthocystis_turfacea_Chlorella_virus	33.1	3.5e-40
>prophage 2
CP025755	Enterococcus faecium strain AALTL plasmid pEFA-790c, complete sequence	35515	26027	35095	35515	transposase	Streptococcus_phage(57.14%)	9	NA	NA
AUO62977.1|26027_26357_-	transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	44.6	2.6e-16
AUO62978.1|26661_26991_+	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
AUO62979.1|26980_27268_+	addiction module toxin RelE	NA	NA	NA	NA	NA
AUO62980.1|27546_28110_-	resolvase	NA	A0A219Y9V9	Aeromonas_phage	46.4	2.3e-36
AUO62981.1|28752_29706_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.1	1.3e-34
AUO62982.1|30562_31249_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
AUO62983.1|31296_32556_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	38.2	1.1e-54
AUO62984.1|32705_33320_-	resolvase	NA	M9Q1K0	Clostridium_phage	30.9	4.9e-16
AUO62985.1|33769_35095_+	type VI secretion protein ImpB	NA	M1Q231	Streptococcus_phage	44.0	6.3e-101
>prophage 1
CP025756	Enterococcus faecium strain AALTL plasmid pEFA-99d7, complete sequence	258454	0	47499	258454	transposase,integrase	Streptococcus_phage(30.0%)	47	28796:28810	46623:46637
AUO62989.1|1474_2161_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	7.7e-127
AUO62990.1|2784_3957_+|transposase	IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
AUO62991.1|5787_6825_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	28.5	7.1e-07
AUO62992.1|6821_7334_-|transposase	transposase	transposase	NA	NA	NA	NA
AUO62993.1|7391_7658_-	hypothetical protein	NA	NA	NA	NA	NA
AUO62994.1|8333_8885_-	mobilization protein	NA	NA	NA	NA	NA
AUO62995.1|8979_9369_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	98.4	6.2e-65
AUO62996.1|9429_10110_+|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	84.1	2.5e-109
AUO62997.1|10137_10701_+	recombinase	NA	A0A1V0E035	Clostridioides_phage	34.9	2.2e-18
AUO62998.1|10745_10913_-	transcriptional regulator	NA	NA	NA	NA	NA
AUO62999.1|10946_11246_-	hypothetical protein	NA	NA	NA	NA	NA
AUO63000.1|11286_11904_-	DNA recombinase	NA	Q1MVP4	Enterobacteria_phage	33.1	5.1e-13
AUO63001.1|12228_12624_-	hypothetical protein	NA	NA	NA	NA	NA
AUO63002.1|12703_15055_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AUO63003.1|15179_15869_-	hypothetical protein	NA	NA	NA	NA	NA
AUO63004.1|15882_16335_-	hypothetical protein	NA	NA	NA	NA	NA
AUO63005.1|16465_17146_+|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	1.3e-126
AUO63006.1|17247_18567_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AUO63007.1|18563_19217_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	33.2	4.0e-24
AUO63008.1|19278_19419_-	RNA helicase	NA	NA	NA	NA	NA
AUO63251.1|19926_20643_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	50.0	4.5e-45
AUO63009.1|20692_20902_-	hypothetical protein	NA	NA	NA	NA	NA
AUO63010.1|21178_21961_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	32.2	1.4e-23
AUO63011.1|21970_22411_+|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
AUO63012.1|22558_23590_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.6	1.8e-26
AUO63252.1|24423_25230_-	ABC transporter permease	NA	NA	NA	NA	NA
AUO63013.1|25235_26060_-	nucleotide pyrophosphatase	NA	NA	NA	NA	NA
AUO63014.1|26049_27150_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUO63015.1|27327_28113_+	histidinol phosphate phosphatase	NA	NA	NA	NA	NA
AUO63016.1|28145_28529_+	hydrolase	NA	NA	NA	NA	NA
28796:28810	attL	ATGAGGGCTTTTTCG	NA	NA	NA	NA
AUO63017.1|29018_29990_-	radical SAM protein	NA	NA	NA	NA	NA
AUO63018.1|30641_32264_+|transposase	DDE transposase	transposase	A0A1X9I5T2	Streptococcus_phage	47.5	2.7e-122
AUO63019.1|32549_33926_-	peptide ABC transporter permease	NA	NA	NA	NA	NA
AUO63020.1|33925_34582_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.1	1.3e-22
AUO63021.1|34591_35869_-	ABC transporter permease	NA	NA	NA	NA	NA
AUO63022.1|36118_36409_+	transcriptional regulator	NA	A0A0C5AJ30	Paenibacillus_phage	61.5	3.3e-23
AUO63023.1|36444_37281_+|transposase	transposase	transposase	A0A2I7SC85	Paenibacillus_phage	53.8	1.5e-76
AUO63024.1|37310_37760_-	thioredoxin	NA	NA	NA	NA	NA
AUO63025.1|37915_38458_-	hypothetical protein	NA	NA	NA	NA	NA
AUO63026.1|38732_39023_+	transcriptional regulator	NA	A0A0C5AJ30	Paenibacillus_phage	61.5	3.3e-23
AUO63027.1|39058_39895_+|transposase	transposase	transposase	A0A2I7SC85	Paenibacillus_phage	53.4	5.8e-76
AUO63253.1|39991_40216_+|transposase	transposase	transposase	NA	NA	NA	NA
AUO63028.1|41068_41977_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
AUO63029.1|42045_42597_-	hypothetical protein	NA	NA	NA	NA	NA
AUO63030.1|42652_43270_-|integrase	integrase	integrase	W8CYP1	Bacillus_phage	46.1	9.6e-36
AUO63031.1|45925_46111_-	hypothetical protein	NA	NA	NA	NA	NA
AUO63032.1|46326_47499_+|transposase	IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	98.4	1.1e-133
46623:46637	attR	CGAAAAAGCCCTCAT	NA	NA	NA	NA
>prophage 2
CP025756	Enterococcus faecium strain AALTL plasmid pEFA-99d7, complete sequence	258454	61328	115134	258454	transposase,integrase	Streptococcus_phage(23.81%)	53	74412:74427	83916:83931
AUO63050.1|61328_61901_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	81.8	5.5e-86
AUO63051.1|61971_62262_+	transcriptional regulator	NA	A0A0C5AJ30	Paenibacillus_phage	61.5	9.7e-23
AUO63052.1|62297_63134_+|transposase	transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.1	3.7e-75
AUO63053.1|63605_64505_-	protein lacX	NA	NA	NA	NA	NA
AUO63054.1|64525_64798_-	tagatose-bisphosphate aldolase	NA	NA	NA	NA	NA
AUO63055.1|64820_66227_-	6-phospho-beta-galactosidase	NA	A0A0B5JD41	Pandoravirus	29.0	3.6e-46
AUO63056.1|66368_68075_-	PTS lactose transporter subunit IIBC	NA	NA	NA	NA	NA
AUO63057.1|68074_68392_-	PTS lactose transporter subunit IIA	NA	NA	NA	NA	NA
AUO63058.1|68419_69400_-	tagatose 1,6-diphosphate aldolase	NA	NA	NA	NA	NA
AUO63059.1|69402_70335_-	tagatose-6-phosphate kinase	NA	NA	NA	NA	NA
AUO63060.1|70345_70861_-	galactose-6-phosphate isomerase subunit LacB	NA	A0A222YX14	Synechococcus_phage	36.0	3.3e-05
AUO63061.1|70877_71303_-	galactose-6-phosphate isomerase subunit LacA	NA	NA	NA	NA	NA
AUO63062.1|71792_72560_+	DeoR family transcriptional regulator	NA	NA	NA	NA	NA
AUO63063.1|73694_74027_-	topoisomerase I	NA	A0A1X9I6W8	Streptococcus_phage	96.8	2.2e-42
74412:74427	attL	TCTTTTAAATGTTTTA	NA	NA	NA	NA
AUO63064.1|75063_75519_-|integrase	integrase	integrase	NA	NA	NA	NA
AUO63065.1|76036_76987_-	magnesium transporter CorA	NA	NA	NA	NA	NA
AUO63066.1|77525_77642_-	type I restriction endonuclease	NA	NA	NA	NA	NA
AUO63067.1|77663_78245_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	82.4	2.2e-90
AUO63068.1|78254_78344_-|transposase	transposase	transposase	A0A1X9I6E7	Streptococcus_phage	93.1	2.0e-08
AUO63069.1|78990_80289_-	hypothetical protein	NA	NA	NA	NA	NA
AUO63070.1|80655_81564_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
AUO63071.1|82026_83319_-	guanosine 5'-monophosphate oxidoreductase	NA	NA	NA	NA	NA
AUO63072.1|83293_85066_-	endonuclease	NA	K4I1H4	Acidithiobacillus_phage	36.1	2.1e-19
83916:83931	attR	TCTTTTAAATGTTTTA	NA	NA	NA	NA
AUO63073.1|85180_86641_-	HsdRI	NA	A0A220A398	Liberibacter_phage	30.2	6.5e-06
AUO63074.1|86702_87545_-	glycosyl transferase	NA	NA	NA	NA	NA
AUO63075.1|87681_89061_-	Xaa-Pro aminopeptidase	NA	NA	NA	NA	NA
AUO63076.1|89210_89666_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	53.5	2.3e-34
AUO63077.1|89655_90321_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
AUO63078.1|90467_90911_+	ribonucleotide reductase assembly protein NrdI	NA	NA	NA	NA	NA
AUO63079.1|90959_91310_+	hypothetical protein	NA	A0A096XT60	Enterococcus_phage	43.8	6.0e-19
AUO63080.1|91391_92345_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.1	1.8e-33
AUO63081.1|92268_93441_-	hypothetical protein	NA	A0A217EQY2	Bacillus_phage	33.5	1.5e-13
AUO63082.1|93470_94199_-	peptidase	NA	A0A1B0T6A2	Bacillus_phage	26.5	6.3e-10
AUO63083.1|94458_95007_-	hypothetical protein	NA	NA	NA	NA	NA
AUO63084.1|95007_95865_-	cobyrinic acid a,c-diamide synthase	NA	F0PIG8	Enterococcus_phage	30.7	8.1e-33
AUO63085.1|96150_96438_-	addiction module toxin RelE	NA	NA	NA	NA	NA
AUO63086.1|96427_96757_-	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
AUO63087.1|97617_97941_-	hypothetical protein	NA	NA	NA	NA	NA
AUO63088.1|100020_100893_-	fructokinase	NA	NA	NA	NA	NA
AUO63089.1|100909_102382_-	sucrose-6-phosphate hydrolase	NA	NA	NA	NA	NA
AUO63090.1|102395_103244_-	ABC transporter permease	NA	NA	NA	NA	NA
AUO63254.1|103240_104107_-	ABC transporter permease	NA	NA	NA	NA	NA
AUO63091.1|104149_105463_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUO63092.1|105602_106574_-	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	22.4	1.2e-05
AUO63093.1|107608_108214_+	recombinase	NA	A0A219YA40	Aeromonas_phage	32.6	3.6e-19
AUO63255.1|108259_108496_-	hypothetical protein	NA	NA	NA	NA	NA
AUO63094.1|109332_109542_-	hypothetical protein	NA	NA	NA	NA	NA
AUO63095.1|110046_110955_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
AUO63096.1|111013_112816_-	DNA polymerase III subunit epsilon	NA	A0A0A7RWA3	Clostridium_phage	30.4	7.6e-33
AUO63097.1|112878_113721_-	hypothetical protein	NA	NA	NA	NA	NA
AUO63098.1|113736_113958_-	transcriptional regulator	NA	NA	NA	NA	NA
AUO63099.1|114100_114424_-	site-specific recombinase	NA	A0A2K5B2B4	Erysipelothrix_phage	87.8	3.9e-12
AUO63100.1|114447_115134_+|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	5.9e-127
>prophage 3
CP025756	Enterococcus faecium strain AALTL plasmid pEFA-99d7, complete sequence	258454	119446	166065	258454	transposase,protease	Streptococcus_phage(35.29%)	56	NA	NA
AUO63105.1|119446_120133_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	5.9e-127
AUO63106.1|120239_120428_-	hypothetical protein	NA	NA	NA	NA	NA
AUO63107.1|120572_121259_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	98.2	4.2e-125
AUO63108.1|121728_122046_-	addiction module toxin RelE	NA	NA	NA	NA	NA
AUO63109.1|122046_122301_-	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
AUO63110.1|122659_123064_+|transposase	IS200/IS605 family transposase ISEfa4	transposase	A0A286QN76	Streptococcus_phage	73.8	1.3e-52
AUO63111.1|123080_124229_+|transposase	transposase	transposase	A0A288TXV8	Enterococcus_phage	93.7	9.0e-205
AUO63112.1|124935_125127_-	hypothetical protein	NA	NA	NA	NA	NA
AUO63113.1|126481_127522_+	replication protein RepA	NA	NA	NA	NA	NA
AUO63114.1|128345_128678_+	conjugal transfer protein TraE	NA	NA	NA	NA	NA
AUO63115.1|129102_129255_+	hypothetical protein	NA	NA	NA	NA	NA
AUO63116.1|129296_129638_+	hypothetical protein	NA	F0PIH7	Enterococcus_phage	62.5	1.5e-35
AUO63117.1|129874_131125_-|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
AUO63118.1|131534_133907_+	hypothetical protein	NA	B5SP25	Lactococcus_phage	29.7	3.4e-12
AUO63119.1|133967_135428_+	hypothetical protein	NA	NA	NA	NA	NA
AUO63256.1|135438_137643_+	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	50.7	6.1e-117
AUO63120.1|137658_137808_+	hypothetical protein	NA	NA	NA	NA	NA
AUO63121.1|137883_138477_+	abortive infection protein	NA	NA	NA	NA	NA
AUO63122.1|138489_139389_+	abortive phage infection protein	NA	NA	NA	NA	NA
AUO63123.1|139391_139865_+	single-stranded DNA-binding protein	NA	Q938M7	Temperate_phage	62.0	5.6e-44
AUO63124.1|139997_140111_-	hypothetical protein	NA	NA	NA	NA	NA
AUO63125.1|140230_140491_+	hypothetical protein	NA	A0A0S2MYI8	Enterococcus_phage	51.4	3.4e-11
AUO63126.1|140935_141142_+	DNA helicase UvrA	NA	NA	NA	NA	NA
AUO63127.1|141141_141393_+	hypothetical protein	NA	NA	NA	NA	NA
AUO63128.1|141408_141825_+	hypothetical protein	NA	NA	NA	NA	NA
AUO63129.1|141806_142079_+	hypothetical protein	NA	NA	NA	NA	NA
AUO63130.1|142245_142647_+|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	43.1	1.4e-24
AUO63131.1|142658_143804_+|transposase	transposase	transposase	D9J0Y9	Brochothrix_phage	74.6	7.7e-164
AUO63132.1|144014_144305_+	PbsX family transcriptional regulator	NA	NA	NA	NA	NA
AUO63133.1|144298_144649_+	growth inhibitor PemK	NA	NA	NA	NA	NA
AUO63134.1|144672_145287_-	resolvase	NA	M9Q1K0	Clostridium_phage	31.9	2.6e-17
AUO63135.1|145600_146023_+	hypothetical protein	NA	NA	NA	NA	NA
AUO63136.1|146032_146236_+	hypothetical protein	NA	NA	NA	NA	NA
AUO63137.1|146446_147031_+	transposon DNA-invertase	NA	A0A0A7NPV4	Enterobacteria_phage	51.7	5.9e-43
AUO63138.1|147199_148525_+	type VI secretion protein ImpB	NA	M1Q231	Streptococcus_phage	43.4	7.7e-99
AUO63139.1|148502_148868_+	hypothetical protein	NA	NA	NA	NA	NA
AUO63140.1|148864_149044_+	hypothetical protein	NA	NA	NA	NA	NA
AUO63141.1|149055_149349_+	type III secretion system protein PrgN	NA	NA	NA	NA	NA
AUO63142.1|149574_150393_+	cobyrinic acid a,c-diamide synthase	NA	F0PIG8	Enterococcus_phage	34.6	6.5e-32
AUO63143.1|150411_150819_+	hypothetical protein	NA	NA	NA	NA	NA
AUO63257.1|151165_152224_+	replication protein RepA	NA	NA	NA	NA	NA
AUO63144.1|153060_153393_+	conjugal transfer protein TraE	NA	NA	NA	NA	NA
AUO63145.1|153817_153949_+	hypothetical protein	NA	NA	NA	NA	NA
AUO63146.1|153983_154313_+	hypothetical protein	NA	NA	NA	NA	NA
AUO63147.1|154299_154641_+	hypothetical protein	NA	F0PIH7	Enterococcus_phage	62.5	2.0e-35
AUO63148.1|154754_154994_+	hypothetical protein	NA	NA	NA	NA	NA
AUO63258.1|155105_155300_+	hypothetical protein	NA	NA	NA	NA	NA
AUO63149.1|155426_156116_+	sortase	NA	NA	NA	NA	NA
AUO63150.1|156121_157288_+	hypothetical protein	NA	NA	NA	NA	NA
AUO63151.1|157369_158041_+	sortase	NA	NA	NA	NA	NA
AUO63152.1|158093_160070_+	peptidase	NA	NA	NA	NA	NA
AUO63153.1|160082_160835_+	class C sortase	NA	NA	NA	NA	NA
AUO63154.1|160850_161612_+	hypothetical protein	NA	NA	NA	NA	NA
AUO63259.1|161738_161885_+	hypothetical protein	NA	NA	NA	NA	NA
AUO63155.1|161881_163972_+	pilus assembly protein	NA	NA	NA	NA	NA
AUO63156.1|164007_166065_-|protease	serine protease	protease	NA	NA	NA	NA
>prophage 4
CP025756	Enterococcus faecium strain AALTL plasmid pEFA-99d7, complete sequence	258454	186159	216786	258454	integrase,transposase,bacteriocin,holin	Leptospira_phage(30.0%)	37	204956:204971	219064:219079
AUO63177.1|186159_187410_-|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
AUO63178.1|187819_190192_+	hypothetical protein	NA	B5SP25	Lactococcus_phage	29.7	3.4e-12
AUO63179.1|190252_191722_+	hypothetical protein	NA	NA	NA	NA	NA
AUO63180.1|193857_194007_+	hypothetical protein	NA	NA	NA	NA	NA
AUO63181.1|194087_194684_+	transcriptional regulator	NA	NA	NA	NA	NA
AUO63182.1|194696_195596_+	abortive phage infection protein	NA	NA	NA	NA	NA
AUO63183.1|195598_195730_+	single-stranded DNA-binding protein	NA	A8ATZ7	Listeria_phage	83.3	1.3e-11
AUO63184.1|195751_196084_+	single-stranded DNA-binding protein	NA	W6LM61	Streptococcus_phage	53.2	6.1e-21
AUO63185.1|196128_196362_+	hypothetical protein	NA	NA	NA	NA	NA
AUO63186.1|196520_196643_-|holin	putative holin-like toxin	holin	NA	NA	NA	NA
AUO63187.1|196832_197057_+	hypothetical protein	NA	NA	NA	NA	NA
AUO63188.1|197499_197706_+	DNA helicase UvrA	NA	NA	NA	NA	NA
AUO63189.1|197705_197957_+	hypothetical protein	NA	NA	NA	NA	NA
AUO63190.1|198137_198410_+	hypothetical protein	NA	NA	NA	NA	NA
AUO63191.1|198638_198839_+	hypothetical protein	NA	NA	NA	NA	NA
AUO63192.1|198854_199034_+	hypothetical protein	NA	NA	NA	NA	NA
AUO63193.1|199092_199449_+	hypothetical protein	NA	NA	NA	NA	NA
AUO63194.1|199490_199772_+	hypothetical protein	NA	NA	NA	NA	NA
AUO63195.1|200417_201371_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.8	3.7e-34
AUO63196.1|201491_201755_+|bacteriocin	circularin A/uberolysin family circular bacteriocin	bacteriocin	NA	NA	NA	NA
AUO63197.1|201738_202029_+	hypothetical protein	NA	NA	NA	NA	NA
AUO63198.1|202126_203305_+|transposase	IS256 family transposase ISEf1	transposase	A0A220NQR7	Corynebacterium_phage	25.6	3.0e-30
AUO63199.1|203836_204745_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
204956:204971	attL	TTTGATTTCATCGGTA	NA	NA	NA	NA
AUO63200.1|206689_207145_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AUO63201.1|207158_208487_+	PTS galactitol transporter subunit IIC	NA	NA	NA	NA	NA
AUO63202.1|208520_208805_+	PTS galactitol transporter subunit IIB	NA	NA	NA	NA	NA
AUO63203.1|208806_209322_+	secondary thiamine-phosphate synthase	NA	NA	NA	NA	NA
AUO63204.1|209337_210000_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AUO63205.1|210006_210579_+	6-phospho 3-hexuloisomerase	NA	NA	NA	NA	NA
AUO63206.1|210750_212298_-|transposase	transposase	transposase	S5VTD3	Leptospira_phage	28.9	2.8e-44
AUO63207.1|212399_212753_-|transposase	transposase	transposase	S5VXZ8	Leptospira_phage	38.7	5.7e-17
AUO63208.1|212742_212985_-	hypothetical protein	NA	NA	NA	NA	NA
AUO63209.1|213118_214639_-|transposase	transposase	transposase	S5VTD3	Leptospira_phage	31.6	1.1e-48
AUO63210.1|214881_215061_-|transposase	transposase	transposase	NA	NA	NA	NA
AUO63211.1|215050_215233_-	hypothetical protein	NA	NA	NA	NA	NA
AUO63261.1|215464_215692_+|transposase	transposase	transposase	NA	NA	NA	NA
AUO63212.1|216186_216786_+|integrase	site-specific integrase	integrase	D2XR58	Bacillus_phage	36.1	1.3e-29
219064:219079	attR	TACCGATGAAATCAAA	NA	NA	NA	NA
>prophage 5
CP025756	Enterococcus faecium strain AALTL plasmid pEFA-99d7, complete sequence	258454	246278	252660	258454	transposase	Paenibacillus_phage(66.67%)	7	NA	NA
AUO63239.1|246278_247115_-|transposase	transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.5	3.1e-77
AUO63240.1|247150_247441_-	transcriptional regulator	NA	A0A0C5AJ30	Paenibacillus_phage	61.5	9.7e-23
AUO63241.1|248009_249302_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	41.0	6.1e-32
AUO63265.1|249575_249812_-	hypothetical protein	NA	NA	NA	NA	NA
AUO63242.1|250086_251265_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	25.3	4.0e-30
AUO63243.1|251616_251913_+	hypothetical protein	NA	A0A0C5AEB1	Paenibacillus_phage	59.2	6.7e-19
AUO63244.1|252369_252660_-	transcriptional regulator	NA	A0A0C5AJ30	Paenibacillus_phage	60.4	1.7e-22
