The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP024890	Rhodococcus ruber strain YYL chromosome, complete genome	5592192	209917	218101	5592192		Mycobacterium_phage(33.33%)	9	NA	NA
AUM15206.1|209917_211546_-	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	27.5	2.5e-38
AUM15207.1|211652_212459_+	NAD(P)-dependent oxidoreductase	NA	A0A0M4JSW6	Mollivirus	33.9	2.9e-08
AUM15208.1|212462_213587_+	lycopene cyclase	NA	NA	NA	NA	NA
AUM15209.1|213639_214614_+	Ku protein	NA	A0A249XRB2	Mycobacterium_phage	43.2	2.3e-52
AUM19690.1|214658_215051_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUM15210.1|215167_215548_-	DUF59 domain-containing protein	NA	NA	NA	NA	NA
AUM15211.1|215547_216036_-	SUF system NifU family Fe-S cluster assembly protein	NA	A0A0K1LSF9	Mycobacterium_phage	44.4	2.4e-21
AUM15212.1|216035_217289_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	45.4	4.3e-99
AUM15213.1|217303_218101_-	Fe-S cluster assembly ATPase SufC	NA	W8CYL7	Bacillus_phage	27.7	3.2e-07
>prophage 2
CP024890	Rhodococcus ruber strain YYL chromosome, complete genome	5592192	1698013	1709770	5592192		Mycobacterium_phage(66.67%)	10	NA	NA
AUM16456.1|1698013_1699054_-	hypothetical protein	NA	A0A2R3ZZ20	Mycobacterium_phage	43.5	1.6e-59
AUM16457.1|1699050_1699353_-	hypothetical protein	NA	NA	NA	NA	NA
AUM16458.1|1699361_1700105_-	hypothetical protein	NA	A0A2P1JQC4	Mycobacterium_phage	36.5	1.5e-14
AUM16459.1|1700191_1701925_-	hypothetical protein	NA	Q1A0A4	Mycobacterium_phage	36.8	1.3e-66
AUM16460.1|1702536_1702806_-	NrdH-redoxin	NA	A0A2H4PFR8	Mycobacterium_phage	41.0	8.5e-13
AUM16461.1|1702805_1703048_-	hypothetical protein	NA	A0A076G7Z4	Mycobacterium_phage	63.3	6.4e-20
AUM16462.1|1703050_1705693_-	hypothetical protein	NA	D4P7Y7	Rhodococcus_phage	38.4	4.5e-98
AUM16463.1|1705843_1707559_-	hypothetical protein	NA	A0A0S2MU76	Streptomyces_phage	34.1	8.5e-58
AUM16464.1|1707562_1707889_-	hypothetical protein	NA	G3MC36	Mycobacterium_phage	33.1	8.4e-07
AUM16465.1|1708030_1709770_-	hypothetical protein	NA	D4P7X6	Rhodococcus_phage	44.5	3.3e-126
>prophage 3
CP024890	Rhodococcus ruber strain YYL chromosome, complete genome	5592192	1713296	1724090	5592192	transposase	Gordonia_phage(33.33%)	17	NA	NA
AUM16468.1|1713296_1714522_-|transposase	IS3 family transposase	transposase	A0A1B3AZE5	Gordonia_phage	56.1	8.2e-87
AUM16469.1|1714839_1715352_-	hypothetical protein	NA	G8I4L2	Mycobacterium_phage	45.0	2.3e-11
AUM16470.1|1715826_1716222_-	hypothetical protein	NA	A0A160DCT3	Gordonia_phage	55.3	8.9e-27
AUM16471.1|1716218_1716602_-	hypothetical protein	NA	E0YQ53	Mycobacterium_phage	46.2	5.4e-21
AUM16472.1|1716598_1718293_-	hypothetical protein	NA	A0A2H4J7B1	uncultured_Caudovirales_phage	33.4	2.6e-51
AUM16473.1|1718938_1719169_-	hypothetical protein	NA	A0A2H4JBI3	uncultured_Caudovirales_phage	45.7	8.5e-06
AUM16474.1|1719165_1719408_-	hypothetical protein	NA	NA	NA	NA	NA
AUM16475.1|1719575_1720229_-	hypothetical protein	NA	M9MUE6	Rhodococcus_phage	37.0	4.3e-18
AUM16476.1|1720303_1720486_-	hypothetical protein	NA	A0A1B3B1U0	Gordonia_phage	47.3	6.7e-06
AUM16477.1|1720478_1721015_-	hypothetical protein	NA	NA	NA	NA	NA
AUM16478.1|1721065_1721293_-	hypothetical protein	NA	NA	NA	NA	NA
AUM16479.1|1721285_1721624_-	hypothetical protein	NA	NA	NA	NA	NA
AUM16480.1|1721620_1721830_-	hypothetical protein	NA	NA	NA	NA	NA
AUM16481.1|1721984_1722206_-	hypothetical protein	NA	NA	NA	NA	NA
AUM16482.1|1722229_1722679_-	hypothetical protein	NA	NA	NA	NA	NA
AUM16483.1|1722681_1722960_-	hypothetical protein	NA	NA	NA	NA	NA
AUM16484.1|1723190_1724090_-	hypothetical protein	NA	A0A088FSQ7	Mycobacterium_phage	73.2	8.6e-118
>prophage 4
CP024890	Rhodococcus ruber strain YYL chromosome, complete genome	5592192	2790095	2809744	5592192		Skermania_phage(30.0%)	22	NA	NA
AUM17345.1|2790095_2790833_+	excisionase	NA	G9FGX8	Rhodococcus_phage	38.2	2.2e-18
AUM17346.1|2791007_2791208_+	hypothetical protein	NA	G8I6R4	Mycobacterium_virus	54.0	1.9e-09
AUM17347.1|2791279_2791660_+	HicB family toxin-antitoxin system	NA	A0A142KC36	Gordonia_phage	45.4	9.8e-23
AUM17348.1|2791735_2792071_-	hypothetical protein	NA	NA	NA	NA	NA
AUM17349.1|2792067_2793045_-	metallopeptidase	NA	G9FHQ8	Rhodococcus_virus	54.0	4.5e-64
AUM17350.1|2793041_2793503_-	M23 family peptidase	NA	A0A1P8D5Q3	Corynebacterium_phage	66.7	2.7e-43
AUM17351.1|2793853_2794255_-	hypothetical protein	NA	A0A2P1JRG4	Mycobacterium_phage	36.4	7.7e-10
AUM17352.1|2794316_2794958_-	hypothetical protein	NA	A0A0N7C8S3	Skermania_phage	37.6	3.2e-18
AUM17353.1|2794924_2795506_-	hypothetical protein	NA	A0A0N6WG45	Skermania_phage	45.1	4.0e-44
AUM17354.1|2795514_2796132_-	hypothetical protein	NA	A0A0N7CC98	Skermania_phage	49.5	3.7e-56
AUM17355.1|2796138_2796792_-	hypothetical protein	NA	A0A0N7CD65	Skermania_phage	37.8	9.8e-31
AUM17356.1|2796793_2798467_-	hypothetical protein	NA	A0A0N7CDI2	Skermania_phage	53.6	1.0e-95
AUM17357.1|2798499_2798886_-	hypothetical protein	NA	A0A286MQD2	Mycobacterium_phage	53.9	2.5e-26
AUM17358.1|2798986_2800228_-	sugar transferase	NA	A0A0N7CBN2	Skermania_phage	53.8	1.9e-136
AUM17359.1|2800256_2806061_-	hypothetical protein	NA	D4P802	Rhodococcus_phage	46.1	3.0e-155
AUM17360.1|2806091_2806283_-	hypothetical protein	NA	NA	NA	NA	NA
AUM17361.1|2806297_2806762_-	hypothetical protein	NA	F1B2Q3	Tsukamurella_phage	50.6	2.8e-19
AUM19879.1|2806827_2807175_-	hypothetical protein	NA	D4P800	Rhodococcus_phage	68.2	4.6e-35
AUM17362.1|2807233_2807566_-	hypothetical protein	NA	A0A1J0MDP6	Mycobacterium_phage	38.2	7.0e-09
AUM17363.1|2807567_2808095_-	hypothetical protein	NA	F1B2Q0	Tsukamurella_phage	55.2	1.9e-48
AUM19880.1|2808091_2808745_-	hypothetical protein	NA	D4P7Z7	Rhodococcus_phage	57.1	1.6e-65
AUM17364.1|2808916_2809744_+	acyltransferase	NA	A0A160DCT9	Gordonia_phage	41.5	2.0e-28
>prophage 5
CP024890	Rhodococcus ruber strain YYL chromosome, complete genome	5592192	2814052	2829318	5592192		Mycobacterium_phage(50.0%)	19	NA	NA
AUM17366.1|2814052_2814868_-	hypothetical protein	NA	A0A0N7CDA1	Skermania_phage	70.4	1.1e-108
AUM17367.1|2814942_2815317_-	hypothetical protein	NA	G9FI12	Nocardia_phage	32.7	1.6e-06
AUM17368.1|2815504_2815780_-	hypothetical protein	NA	NA	NA	NA	NA
AUM17369.1|2815795_2816164_-	hypothetical protein	NA	D4P7Z1	Rhodococcus_phage	51.4	1.2e-09
AUM17370.1|2816175_2816952_-	hypothetical protein	NA	G8I7Y1	Mycobacterium_phage	43.9	3.1e-47
AUM17371.1|2817071_2818814_-	hypothetical protein	NA	F1B2P2	Tsukamurella_phage	73.8	3.2e-177
AUM17372.1|2818976_2819168_-	hypothetical protein	NA	NA	NA	NA	NA
AUM17373.1|2819169_2821548_-	hypothetical protein	NA	D4P7Y7	Rhodococcus_phage	52.4	1.0e-218
AUM17374.1|2821547_2823335_-	hypothetical protein	NA	G8I7X7	Mycobacterium_phage	49.8	3.4e-134
AUM17375.1|2823506_2823728_-	hypothetical protein	NA	NA	NA	NA	NA
AUM17376.1|2823732_2824059_-	hypothetical protein	NA	W8ECD8	Mycobacterium_phage	38.6	9.3e-14
AUM17377.1|2824092_2825730_-	hypothetical protein	NA	G8IBP3	Mycobacterium_phage	55.9	3.0e-161
AUM19881.1|2825732_2825975_-	hypothetical protein	NA	A0A222ZH98	Arthrobacter_phage	40.6	3.3e-08
AUM17378.1|2826147_2826447_-	hypothetical protein	NA	G8I4L2	Mycobacterium_phage	43.3	8.5e-06
AUM17379.1|2826652_2827024_-	hypothetical protein	NA	NA	NA	NA	NA
AUM17380.1|2827020_2827215_-	hypothetical protein	NA	NA	NA	NA	NA
AUM17381.1|2827202_2827730_-	hypothetical protein	NA	A0A0R8V9Z3	Thermobifida_phage	36.6	3.2e-08
AUM17382.1|2827722_2828571_-	hypothetical protein	NA	E0YQ62	Mycobacterium_phage	35.6	1.6e-17
AUM17383.1|2828946_2829318_-	hypothetical protein	NA	G8I4J6	Mycobacterium_phage	71.4	3.2e-42
>prophage 6
CP024890	Rhodococcus ruber strain YYL chromosome, complete genome	5592192	3841287	3904587	5592192	capsid,tRNA,terminase,transposase	Gordonia_phage(30.0%)	66	NA	NA
AUM19938.1|3841287_3841755_-|tRNA	tRNA-specific adenosine deaminase	tRNA	NA	NA	NA	NA
AUM18189.1|3841834_3843091_-	lipase	NA	NA	NA	NA	NA
AUM18190.1|3843262_3843742_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
AUM18191.1|3843776_3844940_-|transposase	transposase	transposase	A0A1D8ETH9	Propionibacterium_phage	64.2	4.6e-132
AUM18192.1|3845065_3845896_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUM18193.1|3845975_3847046_+	osmotically inducible protein C	NA	NA	NA	NA	NA
AUM18194.1|3847066_3848056_-	oligopeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.7	1.9e-17
AUM18195.1|3848052_3849039_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.8	1.3e-18
AUM18196.1|3849035_3849941_-	ABC transporter permease	NA	NA	NA	NA	NA
AUM18197.1|3849937_3850885_-	ABC transporter permease	NA	NA	NA	NA	NA
AUM18198.1|3850938_3852474_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUM18199.1|3852512_3854036_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUM18200.1|3854086_3855631_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUM18201.1|3855778_3856654_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUM18202.1|3856675_3857107_-	TIGR03618 family F420-dependent PPOX class oxidoreductase	NA	NA	NA	NA	NA
AUM18203.1|3857111_3858143_-	phospholipase	NA	NA	NA	NA	NA
AUM18204.1|3858502_3858757_+	hypothetical protein	NA	NA	NA	NA	NA
AUM18205.1|3858787_3859378_-	dCTP deaminase	NA	I4AZP2	Saccharomonospora_phage	75.5	3.9e-79
AUM19939.1|3859469_3860266_-|transposase	IS5/IS1182 family transposase	transposase	NA	NA	NA	NA
AUM18206.1|3860341_3861505_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUM18207.1|3861545_3861923_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AUM18208.1|3862127_3863669_+	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	54.0	2.4e-120
AUM18209.1|3863695_3864313_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AUM18210.1|3864403_3865225_+	DUF2236 domain-containing protein	NA	NA	NA	NA	NA
AUM18211.1|3865175_3866453_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUM18212.1|3867384_3868029_+	hypothetical protein	NA	A0A1D8EW93	Mycobacterium_phage	41.9	7.2e-10
AUM18213.1|3868155_3868650_-	hypothetical protein	NA	NA	NA	NA	NA
AUM18214.1|3869903_3870278_-	hypothetical protein	NA	NA	NA	NA	NA
AUM18215.1|3870351_3870618_-	hypothetical protein	NA	A0A2H4J779	uncultured_Caudovirales_phage	60.0	1.6e-16
AUM18216.1|3870742_3871971_-|transposase	IS3 family transposase	transposase	A0A1B3AZE5	Gordonia_phage	55.8	1.8e-86
AUM19940.1|3872008_3872959_-	metallopeptidase	NA	A0A1S5VYA1	Rhodococcus_phage	50.4	2.3e-60
AUM18217.1|3873372_3873627_-	hypothetical protein	NA	NA	NA	NA	NA
AUM18218.1|3873636_3874692_-	hypothetical protein	NA	A0A222ZNG3	Mycobacterium_phage	28.6	7.2e-15
AUM19941.1|3874759_3875555_+|transposase	IS5/IS1182 family transposase	transposase	NA	NA	NA	NA
AUM18219.1|3875579_3876629_-	hypothetical protein	NA	A0A222ZM91	Mycobacterium_phage	26.6	5.8e-09
AUM18220.1|3876813_3878145_-	hypothetical protein	NA	A0A0E3T897	Gordonia_phage	36.2	1.3e-66
AUM18221.1|3878138_3878963_-	hypothetical protein	NA	NA	NA	NA	NA
AUM18222.1|3878981_3884018_-	hypothetical protein	NA	A0A1B3B020	Gordonia_phage	41.6	6.6e-58
AUM18223.1|3884064_3884475_-	hypothetical protein	NA	NA	NA	NA	NA
AUM18224.1|3884487_3885159_-	hypothetical protein	NA	A0A159B6I6	Gordonia_phage	42.0	2.2e-09
AUM18225.1|3885291_3885630_-	hypothetical protein	NA	Q855G6	Mycobacterium_virus	50.0	2.5e-09
AUM18226.1|3885921_3886218_-	hypothetical protein	NA	A0A1D8EX57	Mycobacterium_phage	47.5	4.0e-16
AUM18227.1|3886280_3887741_-	hypothetical protein	NA	NA	NA	NA	NA
AUM18228.1|3888064_3888565_-	hypothetical protein	NA	NA	NA	NA	NA
AUM18229.1|3888911_3889364_-	hypothetical protein	NA	G9FH92	Rhodococcus_phage	38.8	6.0e-19
AUM18230.1|3889360_3889693_-	hypothetical protein	NA	K4HYD6	Streptomyces_phage	39.4	9.8e-11
AUM18231.1|3889705_3890044_-	hypothetical protein	NA	A0A142KB39	Gordonia_phage	34.0	3.9e-07
AUM18232.1|3890037_3890457_-	hypothetical protein	NA	NA	NA	NA	NA
AUM18233.1|3890535_3891429_-	hypothetical protein	NA	E5DV53	Deep-sea_thermophilic_phage	38.1	1.3e-46
AUM18234.1|3891469_3892231_-	hypothetical protein	NA	NA	NA	NA	NA
AUM18235.1|3892323_3893436_-|capsid	minor capsid protein	capsid	A0A159B6H5	Gordonia_phage	38.8	1.6e-52
AUM18236.1|3893643_3895266_-	hypothetical protein	NA	A0A162E1F1	Gordonia_phage	37.3	4.1e-86
AUM18237.1|3895238_3896582_-|terminase	PBSX family phage terminase large subunit	terminase	G9FH82	Rhodococcus_phage	40.2	1.7e-82
AUM18238.1|3896521_3896947_-	hypothetical protein	NA	A0A0R8V9Z3	Thermobifida_phage	35.2	5.4e-06
AUM18239.1|3898655_3899246_-	hypothetical protein	NA	NA	NA	NA	NA
AUM18240.1|3899242_3899434_-	hypothetical protein	NA	NA	NA	NA	NA
AUM19942.1|3899430_3899820_-	hypothetical protein	NA	A0A088FRG2	Mycobacterium_phage	67.4	8.2e-25
AUM18241.1|3899930_3900299_-	hypothetical protein	NA	NA	NA	NA	NA
AUM18242.1|3900295_3900820_-	hypothetical protein	NA	A0A097EVM2	Mycobacterium_phage	47.3	7.6e-34
AUM18243.1|3900816_3901128_-	hypothetical protein	NA	NA	NA	NA	NA
AUM18244.1|3901124_3902075_-	hypothetical protein	NA	A0A2D1GBB0	Mycobacterium_phage	54.4	4.3e-27
AUM18245.1|3902111_3902498_-	hypothetical protein	NA	A0A0U3TFK9	Gordonia_phage	47.4	6.2e-25
AUM19943.1|3902726_3902951_-	hypothetical protein	NA	Q857F5	Mycobacterium_phage	54.4	4.7e-09
AUM18246.1|3902992_3903199_-	hypothetical protein	NA	NA	NA	NA	NA
AUM18247.1|3903846_3904314_-	hypothetical protein	NA	NA	NA	NA	NA
AUM18248.1|3904344_3904587_-	hypothetical protein	NA	A0A1B3B0Z3	Gordonia_phage	50.8	4.6e-10
>prophage 7
CP024890	Rhodococcus ruber strain YYL chromosome, complete genome	5592192	4975780	5035483	5592192	transposase,tRNA,integrase	Tupanvirus(11.11%)	55	4981069:4981087	5046915:5046933
AUM19175.1|4975780_4977352_-|transposase	IS1634 family transposase	transposase	NA	NA	NA	NA
AUM19176.1|4977542_4978004_-	DUF523 domain-containing protein	NA	NA	NA	NA	NA
AUM19177.1|4978190_4979060_-	oxidoreductase	NA	NA	NA	NA	NA
AUM19178.1|4979167_4979461_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AUM19179.1|4979483_4980041_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AUM20015.1|4980107_4980464_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20016.1|4980769_4981114_-	hypothetical protein	NA	NA	NA	NA	NA
4981069:4981087	attL	CGAAGCCCACGGCGGCACC	NA	NA	NA	NA
AUM19180.1|4981296_4981896_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
AUM19181.1|4981965_4985265_-|tRNA	lysine--tRNA ligase	tRNA	A0A2K9KZX5	Tupanvirus	35.6	9.6e-66
AUM19182.1|4985413_4986094_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AUM19183.1|4986090_4988625_-	histidine kinase	NA	NA	NA	NA	NA
AUM19184.1|4988632_4989292_-	potassium-transporting ATPase subunit C	NA	NA	NA	NA	NA
AUM19185.1|4989297_4991388_-	K(+)-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	25.5	1.9e-27
AUM19186.1|4991384_4993085_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
AUM19187.1|4993092_4993191_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
AUM19188.1|4993534_4994833_+	DUF2254 domain-containing protein	NA	NA	NA	NA	NA
AUM19189.1|4994902_4995256_-	ribosomal subunit interface protein	NA	NA	NA	NA	NA
AUM19190.1|4995383_4997456_-	MMPL family transporter	NA	NA	NA	NA	NA
AUM19191.1|4997530_4997950_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AUM19192.1|4997987_4998731_-	anti-sigma factor	NA	NA	NA	NA	NA
AUM19193.1|4998720_4999296_-	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AUM19194.1|4999464_5000094_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUM19195.1|5000241_5000919_+	cell surface protein	NA	NA	NA	NA	NA
AUM19196.1|5000942_5001524_+	lipocalin	NA	A0A1E1EXN3	Acanthamoeba_castellanii_mimivirus	31.0	2.2e-10
AUM20017.1|5001751_5003611_+	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	25.8	1.8e-21
AUM19197.1|5003668_5005210_-	DUF2867 domain-containing protein	NA	NA	NA	NA	NA
AUM19198.1|5005206_5006571_-	TIGR01777 family protein	NA	NA	NA	NA	NA
AUM19199.1|5006809_5008174_-	deoxyribodipyrimidine photo-lyase	NA	A0A2H4UV63	Bodo_saltans_virus	29.2	1.7e-56
AUM19200.1|5008244_5008469_+	RNA-binding S4 domain-containing protein	NA	NA	NA	NA	NA
AUM19201.1|5008533_5008740_-	hypothetical protein	NA	NA	NA	NA	NA
AUM19202.1|5008871_5009291_-	hypothetical protein	NA	NA	NA	NA	NA
AUM19203.1|5009388_5009913_-	hypothetical protein	NA	NA	NA	NA	NA
AUM19204.1|5009925_5010420_-	S-adenosylmethionine--2-demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
AUM19205.1|5010566_5011319_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AUM19206.1|5011426_5011804_-	hypothetical protein	NA	NA	NA	NA	NA
AUM19207.1|5011823_5013662_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	22.2	6.2e-38
AUM19208.1|5014224_5014980_+|transposase	TnsA-like heteromeric transposase endonuclease subunit	transposase	NA	NA	NA	NA
AUM19209.1|5014969_5016217_+	hypothetical protein	NA	NA	NA	NA	NA
AUM19210.1|5016244_5018308_-	hypothetical protein	NA	NA	NA	NA	NA
AUM19211.1|5018322_5018556_-	hypothetical protein	NA	NA	NA	NA	NA
AUM19212.1|5018719_5019196_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AUM19213.1|5019370_5019655_-	hypothetical protein	NA	NA	NA	NA	NA
AUM19214.1|5019687_5020581_+	hypothetical protein	NA	NA	NA	NA	NA
AUM19215.1|5020571_5021600_+	ATP/GTP-binding protein	NA	NA	NA	NA	NA
AUM19216.1|5021596_5022487_+	hypothetical protein	NA	NA	NA	NA	NA
AUM19217.1|5022770_5023937_+|integrase	integrase	integrase	NA	NA	NA	NA
AUM19218.1|5023938_5024955_+	hypothetical protein	NA	NA	NA	NA	NA
AUM19219.1|5025100_5025562_+	cytochrome P450	NA	V5UQK0	Mycobacterium_phage	43.9	1.8e-26
AUM19220.1|5025715_5027143_-	hypothetical protein	NA	NA	NA	NA	NA
AUM19221.1|5028138_5029363_+|transposase	IS3 family transposase	transposase	A0A160DCU2	Gordonia_phage	54.7	2.4e-86
AUM19222.1|5029409_5030813_+|transposase	transposase	transposase	NA	NA	NA	NA
AUM19223.1|5030930_5032697_+	cytochrome c oxidase subunit I	NA	NA	NA	NA	NA
AUM19224.1|5032726_5033260_+	hypothetical protein	NA	NA	NA	NA	NA
AUM19225.1|5033308_5033929_+	hypothetical protein	NA	NA	NA	NA	NA
AUM19226.1|5034238_5035483_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	44.7	1.0e-81
5046915:5046933	attR	CGAAGCCCACGGCGGCACC	NA	NA	NA	NA
>prophage 8
CP024890	Rhodococcus ruber strain YYL chromosome, complete genome	5592192	5085457	5143213	5592192	protease,transposase	Enterobacteria_phage(27.27%)	57	NA	NA
AUM19261.1|5085457_5086843_+|transposase	transposase	transposase	NA	NA	NA	NA
AUM19262.1|5086842_5087652_+	ATP-binding protein	NA	NA	NA	NA	NA
AUM19263.1|5087794_5088889_+	recombinase family protein	NA	E5FFF9	Burkholderia_phage	34.0	5.7e-15
AUM19264.1|5089097_5089571_+	ATP-binding protein	NA	NA	NA	NA	NA
AUM19265.1|5089978_5090944_-	cation-transporting P-type ATPase	NA	E4ZFI9	Streptococcus_phage	44.5	2.5e-59
AUM19266.1|5091325_5092201_+	M23 family peptidase	NA	G9FHQ8	Rhodococcus_virus	49.2	5.0e-22
AUM20025.1|5092448_5093141_+	DUF3105 domain-containing protein	NA	NA	NA	NA	NA
AUM19267.1|5093137_5093872_+	DUF305 domain-containing protein	NA	NA	NA	NA	NA
AUM20026.1|5093980_5094220_+	DUF4229 domain-containing protein	NA	NA	NA	NA	NA
AUM19268.1|5094241_5095480_-	divalent metal cation transporter	NA	NA	NA	NA	NA
AUM20027.1|5095570_5096494_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AUM19269.1|5096539_5097100_-	copper resistance protein CopC	NA	NA	NA	NA	NA
AUM19270.1|5097285_5097945_+	disulfide bond formation protein DsbA	NA	NA	NA	NA	NA
AUM20028.1|5097986_5098589_+	Vitamin K epoxide reductase	NA	NA	NA	NA	NA
AUM19271.1|5098658_5099279_-	hypothetical protein	NA	NA	NA	NA	NA
AUM19272.1|5099370_5099904_-	hypothetical protein	NA	NA	NA	NA	NA
AUM19273.1|5099932_5101699_-	cytochrome c oxidase subunit I	NA	NA	NA	NA	NA
AUM19274.1|5101810_5102758_-	peptidase M48	NA	NA	NA	NA	NA
AUM19275.1|5102754_5103117_-	penicillinase repressor	NA	NA	NA	NA	NA
AUM19276.1|5103154_5104051_-	M23 family peptidase	NA	G3MBX9	Mycobacterium_phage	50.0	1.0e-22
AUM19277.1|5104188_5106180_-	copper resistance protein CopD	NA	NA	NA	NA	NA
AUM19278.1|5106391_5107315_+	cation transporter	NA	NA	NA	NA	NA
AUM20029.1|5107982_5109212_-	hypothetical protein	NA	NA	NA	NA	NA
AUM19279.1|5109493_5111191_+	copper oxidase	NA	NA	NA	NA	NA
AUM19280.1|5111943_5112141_-	hypothetical protein	NA	NA	NA	NA	NA
AUM19281.1|5112265_5112448_-	hypothetical protein	NA	NA	NA	NA	NA
AUM19282.1|5112584_5112875_+	hypothetical protein	NA	NA	NA	NA	NA
AUM19283.1|5113148_5113901_+|protease	CAAX protease	protease	NA	NA	NA	NA
AUM19284.1|5114498_5115746_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	51.9	4.8e-111
AUM19285.1|5115788_5117105_+	transcriptional regulator	NA	NA	NA	NA	NA
AUM19286.1|5117101_5117947_+	AAA family ATPase	NA	U5N3V8	Enterobacteria_phage	39.6	1.6e-41
AUM19287.1|5118667_5119291_-	DNA invertase	NA	A0A0A7NPV4	Enterobacteria_phage	55.9	1.4e-47
AUM19288.1|5119356_5120166_-	ATP-binding protein	NA	NA	NA	NA	NA
AUM19289.1|5120165_5121551_-|transposase	transposase	transposase	NA	NA	NA	NA
AUM20030.1|5121552_5122155_-	recombinase family protein	NA	A0A219YB42	Aeromonas_phage	47.3	2.1e-35
AUM19290.1|5122352_5122712_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AUM19291.1|5122708_5123305_+	cadmium transporter	NA	NA	NA	NA	NA
AUM19292.1|5123537_5124905_-	pyridine nucleotide-disulfide oxidoreductase	NA	NA	NA	NA	NA
AUM19293.1|5124983_5125976_-	cytochrome c biogenesis protein CcdA	NA	NA	NA	NA	NA
AUM19294.1|5125972_5126518_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
AUM19295.1|5126514_5126841_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20031.1|5126863_5127247_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AUM19296.1|5127368_5128805_+	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	30.3	5.5e-50
AUM19297.1|5128826_5129249_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AUM19298.1|5129319_5129961_+	alkylmercury lyase	NA	NA	NA	NA	NA
AUM19299.1|5130025_5130541_+	DUF1440 domain-containing protein	NA	NA	NA	NA	NA
AUM19300.1|5130568_5133709_-|transposase	Tn3 family transposase	transposase	Q1MVP5	Enterobacteria_phage	38.6	1.8e-186
AUM19301.1|5133861_5134794_+	cation-transporting P-type ATPase	NA	A0A218MNH6	uncultured_virus	30.1	1.0e-20
AUM19302.1|5135185_5135512_-	hypothetical protein	NA	NA	NA	NA	NA
AUM19303.1|5135663_5136623_-	c-type cytochrome biogenesis protein CcsB	NA	NA	NA	NA	NA
AUM20032.1|5136627_5138148_-	cytochrome c biogenesis protein ResB	NA	NA	NA	NA	NA
AUM19304.1|5138255_5139062_-	cytochrome c biogenesis protein CcdA	NA	NA	NA	NA	NA
AUM19305.1|5139058_5139634_-	protein disulfide reductase	NA	NA	NA	NA	NA
AUM19306.1|5139672_5140302_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
AUM20033.1|5140553_5141192_+	TVP38/TMEM64 family protein	NA	NA	NA	NA	NA
AUM19307.1|5141697_5141889_-	hypothetical protein	NA	NA	NA	NA	NA
AUM19308.1|5141975_5143213_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
>prophage 1
CP024892	Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence	236354	6089	78500	236354	transposase	Mycobacterium_phage(37.5%)	57	NA	NA
AUM20145.1|6089_9083_-|transposase	DDE transposase	transposase	NA	NA	NA	NA
AUM20146.1|9759_11199_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AUM20147.1|11452_12085_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20148.1|12163_13273_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AUM20149.1|13521_13908_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20150.1|13874_14915_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20309.1|14945_16034_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AUM20151.1|16157_17795_-	methane monooxygenase	NA	NA	NA	NA	NA
AUM20152.1|17944_19447_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA	NA
AUM20153.1|19599_20064_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20154.1|20774_21452_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUM20155.1|21792_23202_-|transposase	IS1380 family transposase	transposase	NA	NA	NA	NA
AUM20156.1|23526_24816_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AUM20157.1|25019_27947_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AUM20158.1|28242_28725_-	hypothetical protein	NA	A0A222ZN33	Mycobacterium_phage	48.7	5.6e-15
AUM20159.1|31814_32432_+	methyltransferase	NA	NA	NA	NA	NA
AUM20310.1|32485_33241_-	3-ketoacyl-ACP reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	29.6	1.5e-14
AUM20160.1|33344_36338_-|transposase	DDE transposase	transposase	NA	NA	NA	NA
AUM20161.1|36678_38037_-	cytochrome P450	NA	V5UQK0	Mycobacterium_phage	42.1	1.0e-93
AUM20162.1|39062_39779_+	ParA family protein	NA	NA	NA	NA	NA
AUM20163.1|39771_40290_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20164.1|40499_41495_+	DUF2637 domain-containing protein	NA	NA	NA	NA	NA
AUM20165.1|41870_43346_-	putative lipid II flippase FtsW	NA	NA	NA	NA	NA
AUM20166.1|43478_43664_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20167.1|43664_43901_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20168.1|44013_44679_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20169.1|44765_45929_-	indolylacetylinositol arabinosyltransferase	NA	NA	NA	NA	NA
AUM20170.1|46166_46640_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20171.1|47009_47192_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20172.1|47454_48198_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
AUM20173.1|49296_50106_-	ATP-binding protein	NA	R9U430	Rhizobium_phage	21.8	8.8e-05
AUM20174.1|50105_51491_-|transposase	transposase	transposase	A0A2H4JGQ6	uncultured_Caudovirales_phage	22.8	6.8e-05
AUM20311.1|51492_52095_-	recombinase family protein	NA	A0A219YB42	Aeromonas_phage	47.3	2.1e-35
AUM20175.1|52292_52652_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AUM20176.1|52648_53245_+	cadmium transporter	NA	NA	NA	NA	NA
AUM20177.1|53442_54030_+	DNA resolvase	NA	A0A0A7NPV4	Enterobacteria_phage	40.6	1.6e-24
AUM20312.1|55005_56808_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20178.1|57485_57944_-	transcriptional regulator	NA	NA	NA	NA	NA
AUM20179.1|58849_60466_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20313.1|60550_61630_+	insoluble domain protein	NA	NA	NA	NA	NA
AUM20180.1|61733_62849_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20181.1|62845_63619_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20182.1|63615_64188_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20183.1|64205_64499_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20184.1|64515_64902_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20185.1|64898_65504_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20186.1|65500_66343_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20314.1|66336_67905_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20187.1|67901_69407_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20188.1|69426_71187_+	ATP-binding protein	NA	NA	NA	NA	NA
AUM20189.1|71183_71498_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20190.1|71494_73132_+	peptidase M23	NA	A0A1D8EVX2	Mycobacterium_phage	37.2	9.4e-30
AUM20315.1|73146_73695_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20191.1|73710_75702_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
AUM20192.1|75706_76207_+	DUF4913 domain-containing protein	NA	NA	NA	NA	NA
AUM20193.1|76304_76889_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20194.1|77042_78500_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
CP024892	Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence	236354	100485	152688	236354	transposase	Corynebacterium_phage(33.33%)	40	NA	NA
AUM20205.1|100485_102027_+|transposase	transposase	transposase	NA	NA	NA	NA
AUM20206.1|102073_102838_+	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	29.8	3.2e-25
AUM20207.1|105024_105642_+	hypothetical protein	NA	A0A248SJV3	Salicola_phage	34.2	1.0e-13
AUM20208.1|105670_106156_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20209.1|106319_106580_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20210.1|106670_107339_+	hypothetical protein	NA	S5VKI3	Leptospira_phage	29.5	5.7e-18
AUM20211.1|107284_108223_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20212.1|108384_108678_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20213.1|108605_109679_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20214.1|109692_110670_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20215.1|112593_113868_+|transposase	IS110 family transposase	transposase	Q9JMN8	Wolbachia_phage	28.3	2.1e-37
AUM20216.1|114240_115812_-|transposase	IS1634 family transposase	transposase	NA	NA	NA	NA
AUM20217.1|117273_118521_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	51.9	4.8e-111
AUM20218.1|119089_120334_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	44.7	1.0e-81
AUM20219.1|120349_120619_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20220.1|120790_121300_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20317.1|121901_122648_-	amidase	NA	NA	NA	NA	NA
AUM20221.1|122839_124390_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AUM20318.1|124566_125640_+	UDP-N-acetylenolpyruvoylglucosamine reductase	NA	NA	NA	NA	NA
AUM20222.1|125885_126161_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20223.1|126309_126606_-	molecular chaperone GroES	NA	NA	NA	NA	NA
AUM20224.1|126686_128072_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20225.1|128101_129814_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20226.1|129832_130573_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20227.1|130929_132417_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20228.1|132308_133751_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20229.1|133747_134647_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20230.1|135315_135852_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20231.1|136274_136736_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20232.1|136937_138218_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20233.1|138347_138734_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20234.1|138850_139060_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20235.1|139229_140021_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20236.1|140350_140674_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20237.1|140812_143029_-	ATP-binding protein	NA	NA	NA	NA	NA
AUM20238.1|145496_146051_-	adenylate cyclase	NA	NA	NA	NA	NA
AUM20239.1|146668_147802_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AUM20240.1|148383_149265_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20241.1|149576_149768_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20242.1|151116_152688_+|transposase	IS1634 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP024892	Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence	236354	162912	225979	236354	transposase,integrase	Gordonia_phage(16.67%)	52	149823:149845	207130:207152
149823:149845	attL	CCGGTCGATACCGGCAGCACCCG	NA	NA	NA	NA
AUM20250.1|162912_164424_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
AUM20251.1|165096_165849_+	hypothetical protein	NA	A0A2P1A0W3	Gordonia_phage	43.6	2.6e-59
AUM20252.1|165845_167009_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20253.1|167029_168202_-	HNH endonuclease	NA	NA	NA	NA	NA
AUM20254.1|168198_169398_-	DNA methyltransferase	NA	A0A1B0XVT8	Campylobacter_phage	33.0	8.4e-20
AUM20255.1|169780_170794_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20321.1|170800_171931_-|integrase	integrase	integrase	NA	NA	NA	NA
AUM20256.1|171818_172196_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20257.1|172789_173020_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20258.1|173224_174841_-|transposase	IS1634 family transposase	transposase	NA	NA	NA	NA
AUM20259.1|175159_176482_-|transposase	ISL3 family transposase	transposase	Q6V7R1	Burkholderia_virus	25.8	6.9e-07
AUM20260.1|179510_180119_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20261.1|180072_180465_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20262.1|180668_181514_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20263.1|181553_182282_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20264.1|182375_184130_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20265.1|184126_184798_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20266.1|184801_186535_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20267.1|186531_188073_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20268.1|188069_188798_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20269.1|188794_190924_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20270.1|190972_191425_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20271.1|191450_192233_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20272.1|192242_194333_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20273.1|194396_195533_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20274.1|195731_197786_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20275.1|199079_200648_+	CRISPR-associated endonuclease Cas1	NA	NA	NA	NA	NA
AUM20276.1|200665_200959_+	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA	NA
AUM20322.1|201140_201937_-|transposase	IS5/IS1182 family transposase	transposase	A0A0M5M147	Mycobacterium_phage	32.4	2.3e-21
AUM20277.1|202207_202474_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20278.1|202470_202767_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20279.1|204819_205068_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20280.1|205155_205884_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20281.1|206406_206652_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20282.1|206818_207064_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20323.1|207208_207400_-	hypothetical protein	NA	NA	NA	NA	NA
207130:207152	attR	CGGGTGCTGCCGGTATCGACCGG	NA	NA	NA	NA
AUM20283.1|207799_208660_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20284.1|209898_210084_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20285.1|210103_210781_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20286.1|210777_212613_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20287.1|212609_213755_-	recombinase XerD	NA	NA	NA	NA	NA
AUM20288.1|214179_214479_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20324.1|214838_215147_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20289.1|215301_215823_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20290.1|216265_217006_+|transposase	transposase	transposase	NA	NA	NA	NA
AUM20291.1|217002_219141_+|transposase	transposase	transposase	NA	NA	NA	NA
AUM20292.1|219137_220241_+	AAA family ATPase	NA	NA	NA	NA	NA
AUM20293.1|220237_222583_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20294.1|222839_223436_-	cadmium transporter	NA	NA	NA	NA	NA
AUM20295.1|223432_223792_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AUM20296.1|223989_224592_+	recombinase family protein	NA	A0A219YB42	Aeromonas_phage	47.3	2.1e-35
AUM20297.1|224593_225979_+|transposase	transposase	transposase	A0A2H4JGQ6	uncultured_Caudovirales_phage	22.8	6.8e-05
>prophage 1
CP024891	Rhodococcus ruber strain YYL plasmid pYYL1.2, complete sequence	90897	4654	69426	90897	transposase,integrase	uncultured_Caudovirales_phage(16.67%)	54	2767:2826	59354:63484
2767:2826	attL	TGTGGACTTGATCGCTTTGTGGCGGTCTTCTGTGGCTACTTCTTGGCGGCGACGTACCAA	NA	NA	NA	NA
AUM20070.1|4654_6040_+|transposase	transposase	transposase	A0A2H4JGQ6	uncultured_Caudovirales_phage	22.8	6.8e-05
AUM20071.1|6039_6849_+	ATP-binding protein	NA	R9U430	Rhizobium_phage	21.8	8.8e-05
AUM20072.1|7656_8979_-|transposase	ISL3 family transposase	transposase	Q6V7R1	Burkholderia_virus	25.8	6.9e-07
AUM20129.1|9266_10820_-	hypothetical protein	NA	A0A1I9SA50	Rhodococcus_phage	35.0	8.9e-22
AUM20073.1|10710_13164_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
AUM20130.1|13160_14006_-|integrase	integrase	integrase	NA	NA	NA	NA
AUM20074.1|14455_14761_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20075.1|14777_15179_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20131.1|15620_16721_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20076.1|17414_17867_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20077.1|17878_19519_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20078.1|19728_19917_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20079.1|20055_21354_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20080.1|21437_21644_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20132.1|21762_22560_-	chromosome partitioning protein	NA	A0A240F4U1	Ochrobactrum_phage	35.3	7.8e-14
AUM20133.1|22623_22905_-	replication protein RepB	NA	NA	NA	NA	NA
AUM20134.1|22904_23783_-	replication protein RepA	NA	NA	NA	NA	NA
AUM20081.1|24049_24439_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20082.1|25087_25630_+	dihydrofolate reductase	NA	NA	NA	NA	NA
AUM20135.1|26712_28176_-	adenylate/guanylate cyclase domain-containing protein	NA	A0A1B1IWY2	uncultured_Mediterranean_phage	30.6	2.3e-11
AUM20083.1|28319_28859_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AUM20084.1|28884_30462_-	MFS transporter	NA	NA	NA	NA	NA
AUM20136.1|30584_31250_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUM20085.1|31608_32424_-	AAA family ATPase	NA	NA	NA	NA	NA
AUM20086.1|32420_34076_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
AUM20087.1|34672_34906_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20088.1|34902_35490_-	invertase	NA	A0A0A7NPV4	Enterobacteria_phage	45.5	2.2e-34
AUM20089.1|35733_36330_-	cadmium transporter	NA	NA	NA	NA	NA
AUM20090.1|36326_36686_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AUM20091.1|36883_37486_+	recombinase family protein	NA	A0A219YB42	Aeromonas_phage	47.3	2.1e-35
AUM20092.1|37487_38873_+|transposase	transposase	transposase	A0A2H4JGQ6	uncultured_Caudovirales_phage	22.8	6.8e-05
AUM20093.1|38872_39682_+	ATP-binding protein	NA	R9U430	Rhizobium_phage	21.8	8.8e-05
AUM20094.1|46113_46515_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20095.1|48054_49155_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20096.1|49168_49411_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20097.1|49615_49822_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20137.1|50948_51185_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20098.1|51343_51577_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20099.1|52632_54174_+|transposase	transposase	transposase	NA	NA	NA	NA
AUM20100.1|54220_54985_+	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	29.8	3.2e-25
AUM20101.1|57171_57789_+	hypothetical protein	NA	A0A248SJV3	Salicola_phage	34.2	1.0e-13
AUM20102.1|57817_58303_+	hypothetical protein	NA	NA	NA	NA	NA
AUM20103.1|58466_58727_-	hypothetical protein	NA	NA	NA	NA	NA
AUM20104.1|59487_60084_-	cadmium transporter	NA	NA	NA	NA	NA
AUM20105.1|60080_60440_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AUM20106.1|60637_61240_+	recombinase family protein	NA	A0A219YB42	Aeromonas_phage	47.3	2.1e-35
AUM20107.1|61241_62627_+|transposase	transposase	transposase	A0A2H4JGQ6	uncultured_Caudovirales_phage	22.8	6.8e-05
AUM20108.1|62626_63436_+	ATP-binding protein	NA	R9U430	Rhizobium_phage	21.8	8.8e-05
AUM20109.1|63619_64186_-	hypothetical protein	NA	NA	NA	NA	NA
59354:63484	attR	TGTGGACTTGATCGCTTTGTGGCGGTCTTCTGTGGCTACTTCTTGGCGGCGACGTACCAATCGGGCGTTCTGGCCGGAAGAATTAGAGCGAGTCGGCGACTCACGGGTGCGTGGTGGGGTTTGCGTCGGTTTTGTCAGAGTCCGAATGCTCCGCCGCTGATCAGGATGAAGGCGCCCAGGCCGATCAGGACAGTCGGGAACAGGATATGTTCCCAGCGCTCTAGGACTTCGGCGATCGGTCGGCGGGTGGCGACGAACTTGGCCAGGCCCACCAGTCCCGCCACCAGCACCAGGAACACGATGCAGTAGGCAACTACGGCTCCCGTGCCCACGTTGAGAAAGACGGGGACGTAGACGCCGATGTTGTCGCCGCCGTTGGCGAAGGTTACGCCGGCCACGGTCCATACTGCGACGTTCTTGCCCTCGATCTTTGCGTCGTCGTCATCATCGTCCCCGCGCCAGGCCTGCCACGCGGCCCGCAGTCCCAAGCCCAGTGGGATCAGTCCGAAGTAAGGGATGGCCCCCGGGGGCAGGAAGGCTCCCGCGCCCAGGGAGACGAGCACTGCGGCGCCGAGGATGCCGACGAAGCCAAGATACTGGCCGGCCAGAATGCGTGCGGTGGTGCCGCGTTGGCCTGCTCCGCGGGCGAAAAACAGCGACAGGACGATGATGTCGTCGATATTGGTGGCAATGAACAGGCCGATCGCCTGCAGGGCCGAGGACAGGATCACGCCTGCACCTCCGTGGCGTGACAACCCGGCACTGAGCAGTCGGGCTCCAAGCAGGGGGCGTTTTCGTTGACCGCGAGGGTGACCTCGACCAAGGAGGATAGCGACCGCGCCAAGTGCGGGTCTGCGATCTCGTACCGGGTCTGGCGGCCTTCGGGCACTGCGGCAACGATCCCGCAGTCGCGCAGGCATGCCAGATGGTTCGACACGTTCGACCGTGTCAGCTCCAAATCGCGGGCCAGCTCCGCCGGGTAGGCCGGCTGCTGCAGCAAGGTCAGCAGTATCCGGGACCGCGTCGGGTCGGCCATCGCCCGCCCTAACCGGTTCATCACATCCACACGAGAAACAATAGTCAGCACTTACTGAACTATACAGCGTCTGCTGAACTGTTGGGACAGCGCCTTAAAAACCTAAAGATTTATGAGACATCAGGTGGAGGCTGAAATTCGAGATCGCTTCATGGGTCAATGGACACATTTTTCGTCTCTCGAAGTCGTCTCACTGCAAAGTGTCGCAGGGTGGTGCTCGGCAGGGGTTTGTGAGGCACAATCGGGTCATGAGGCTGTTGGGGTACACCCGCGTGAGTACCGCGAGTCAGGACGCGCAGTTGCAGTTGGATGCACTCGTGGATTCCGGGGTGCAGAAGCGGGATGTGTTTGCGGATGTGACCTCGGGTAGCCGGACCGCGATCGAGCGCCCCGGGATGAAGCGGCTATTGGACTACGTCGAGCCCGGCGACACGGTCGTGGTATGGCGCATCGATCGGCTCGGCCGTTCCCTGATCGATGTCCTCAACACTGTGAACCTGCTTCGGGACAAGGGCGTCAAGATCCAGTCTCTCTCGGACGGCATCGACCCGGAGACCACTTCCGGCCGGCTGATGCTGGGCATGCTCGCAACGCTGGCCGAGTACGAGCGCGAGCTCATCACCGAGCGAGTCAATGCCGGCATCGCTGCGGCGAAGCAGAGCGGCACCCGCTTCGGTCGTCCACCTGTTGACCCAGCGGTGATTGCCGAAAAACTCGACATCGCCCGAGACGCCAGAGCCAAGGGCCGCACAGCCGAAGAGGCCGCCCGGCTGGTCGGGTGGTCCCGCGCCACTCTCTACCGGCACCAACAAGCTGCCCGCGACCGCGACACGGTCTCCCAGCAGGTGTGACGTGGACGGGCCGCAGCGGTGGCGCATCCTGCGACTTCACGTCGAGGACGGCATCTCGCTGACGGCCTTGGCCCGCGACACCGGTACCGGGCTGCGCACCCTGCAACGCTGGCACCAGCTCTACAAGACCGGCGGCATCGCGGCGTTGGAGCCGCGGCCACGGCGCGACACGGGATCTCGACGTACTCCGGCGGAACTGGTCACGTTCCTCGAGCACCTCGCGCTCACCCGCCCACGCCCGAGTACCGCTACTTTGCATCGGCTCACCGTGACCGAAGCGGGGCGCTTGGGTTTGGCGGCCCCGAGTTATGCCACGGTCCGCGCCATCGTCCTCGCTTTGGACCCGGCCCTGGTGACGCTTGCTCTGGAGGGGCCGGCAGCATATCGGGACCGGTACGAACTGGTGTTCCGCCATCGTGCCGAACGCCCGAATACGACGTGGCAAGCCGATCACACCGAACTCGACATCCTCATCACTGGCGCCAGTGGCACCGCCGAGCGGCCCTGGCTGACGGTGGTGATGGACGACTACTCCCGCGCTGTCTGCGGATACATGGTTTTCACCGGGGCGCCCTCGGCGATGAACACCGCGCTGGCGCTACGACAGGCGATCTGGCGCAAGACTGATCCGGCCTGGGCGATGTGCGGGCTACCTGACGTCCTCTATATCGACCACGGCAGCGACTTCACCAGCCACCACCTCGAGTACACCGCGATCGCACTGAAGATCCGCCTCATCTTCTCGACCGTCGGACGACCGCAAGGCCGAGGCAAGATTGAGCGATTCTTCGGCACAGTCAACACCGAACTCCTGGCCACCCTGCCAGGACACCTGGCGCCCGGGGCAAAGGCGCCGCAACCATCGTTGGACCTACCTGCGCTCGATCAAGAAATCGCCAGTTTCATCGCCACCTACAACGAGCGGACTCACCGGGAGATCGGCACGAGCCCGAAGAAGGCGTGGATTGGTGATGGCTGGTTGCCGCGCATGCCCGAATCCCTCGATGAACTCGACGGACTACTGCTGACGGTGCCCAAACACCGCACCGTGCAGCGTGACGGAATCCATTTCCAAGGCCACCGCTACCGCTCATCGACCCTGGCACCGTTCGTTGGGCGCCCCGTCACGATCCGATACGACCCGCGCGATGTCTCCGAGATCCGCGTCTACGACCACGACACCTTCGTCTGCGTCGCCATCGACGAGGCCCACCCGAACGAGAGACTGAGCCTGCGCGAGATCGAGACAGCACGCCGTGCCCGCCGCCAGAAACTGCGTAAAGACATCAACGACCGCATCCCCCGTATCGCCGATCGTGAAGAACCCCGCACCACTGCGCCCGTTGCCCGCCGATCGAAGCTGCGAACCTACGAAGAGGATGAATGATGACCAAGGACTTCATCGTCACCAAGGAACACCGCCGCTTTAGAGAGTTCGCGAACGCCGTGCGCAAAGAACACACGATCGGCATCTGCCACGGCGATGCTGGCATCGGCAAGACCCTCTCGGCACGCCGCTACGCCCACTGGGACACCCTGGGCGCATACATCGACGAATGGGGTCCCCGCACCGAAGACGACGCGAAGCACCACGCCACAGCAAACCGGACCCGCACAGTGTTCTACACCCCCGAAGTCCTGCCCCGGCATAAACAGCTCATGGCCGAGATCGAGCACCTACGCATCAGAGTCGGGATCTGTGTCGACGAACATCAACGCAGTATCGGCAAGGCCACCGGCGCTCGCACCGGTGACGTGACCAGGTGGGTCGAACTATTAATCATCGACGAAGCCGAACGCCTGACCCCGACTGCGCTCGAACTACTCCGCGATCACCACGATCGCCACCAACTGGCAATCGTCCTCATCGGTATGCCTGGCATCGATCAGCGTTTCCGCCACTACCCGCAGCTCTACTCTCGCCTCGGATTCTCACACCGCTACCGGGCACTCGGCCGAGAAGAACTGCTCTTCGTCCTCGACCGCCACTGGAAACGCCTCGGCCGCACCCTCGACCCTGACGACTTCACCGACGCTCAAGCTATCGCCGCGATCGAACGCATCACCCGGGGCAACTTCCGACTCCTCGAACGCCTCTTCCCGCAGATCGCCCGAGTGCTCAAGATCAACCAACTCGAGACCATCACCGACGACGTCATAGAATCCGCCGCTAGCATCCTCGTGATCGGAAACTAACGCCCCCGAGCGATCACAGAAAACCGCCACACAGCGCTCAAACCCACA	NA	NA	NA	NA
AUM20110.1|64182_65964_-	serine/threonine protein kinase	NA	Q2NP48	Hyphantria_cunea_nuclear_polyhedrosis_virus	30.6	1.1e-44
AUM20111.1|65960_66416_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUM20112.1|66472_67906_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	33.9	7.2e-26
AUM20113.1|67999_68617_+	methyltransferase	NA	NA	NA	NA	NA
AUM20138.1|68670_69426_-	3-ketoacyl-ACP reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	29.6	1.5e-14
