assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002863885.1_ASM286388v1	CP023673	Escherichia coli strain SMN013SH2 chromosome, complete genome	1	640861-640981	1	CRISPRCasFinder	no		cas3,csa3,cas8e,cas7,cas5,cas6e,cas2,DEDDh,DinG,c2c9_V-U4,PrimPol	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGGGTG	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cas7,cas5,cas6e,cas2,DEDDh,DinG,c2c9_V-U4,PrimPol	NA,NA|55aa|down_0|CP023673.1_641051_641216_-	NA|313aa|up_9|CP023673.1_629118_630057_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_8|CP023673.1_630155_631145_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_7|CP023673.1_631166_632498_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_6|CP023673.1_632523_633732_+	PRK12379, PRK12379, propionate kinase	NA|62aa|up_5|CP023673.1_633765_633951_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|703aa|up_4|CP023673.1_633950_636059_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|CP023673.1_636072_636462_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|CP023673.1_636533_637898_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|CP023673.1_638170_639502_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|CP023673.1_639529_640840_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|CP023673.1_641051_641216_-	NA	NA|234aa|down_1|CP023673.1_641238_641940_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|CP023673.1_642044_642941_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|CP023673.1_642991_643348_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|232aa|down_4|CP023673.1_643483_644178_+	pfam03400, DDE_Tnp_IS1, IS1 transposase	NA|122aa|down_5|CP023673.1_644363_644729_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_6|CP023673.1_645021_646008_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_7|CP023673.1_646077_646560_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_8|CP023673.1_646655_646955_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_9|CP023673.1_646944_647349_-	COG5393, COG5393, Predicted membrane protein [Function unknown]
GCA_002863885.1_ASM286388v1	CP023673	Escherichia coli strain SMN013SH2 chromosome, complete genome	2	985270-985358	2	CRISPRCasFinder	no		cas3,csa3,cas8e,cas7,cas5,cas6e,cas2,DEDDh,DinG,c2c9_V-U4,PrimPol	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACC	28	0	0	NA	NA	I-E	1	1	Orphan	cas3,csa3,cas8e,cas7,cas5,cas6e,cas2,DEDDh,DinG,c2c9_V-U4,PrimPol	NA,NA	NA|447aa|up_9|CP023673.1_970303_971644_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|919aa|up_8|CP023673.1_971875_974632_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_7|CP023673.1_974688_975990_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_6|CP023673.1_976037_978272_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_5|CP023673.1_978349_978598_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_4|CP023673.1_978597_978933_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_3|CP023673.1_979003_979795_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|CP023673.1_980022_981660_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|CP023673.1_981747_983046_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|CP023673.1_984258_984930_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|232aa|down_0|CP023673.1_985911_986606_-	pfam03400, DDE_Tnp_IS1, IS1 transposase	NA|493aa|down_1|CP023673.1_986772_988251_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_2|CP023673.1_988277_989555_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_3|CP023673.1_989872_990658_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_4|CP023673.1_990727_992182_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_5|CP023673.1_992275_993613_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_6|CP023673.1_993590_994370_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_7|CP023673.1_994366_995227_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_8|CP023673.1_995374_995950_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_9|CP023673.1_995966_996227_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]
GCA_002863885.1_ASM286388v1	CP023673	Escherichia coli strain SMN013SH2 chromosome, complete genome	3	1011497-1011650	1	PILER-CR	no	cas3,cas8e,cas7,cas5,cas6e,cas2	cas3,csa3,cas8e,cas7,cas5,cas6e,cas2,DEDDh,DinG,c2c9_V-U4,PrimPol	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCGTCC	32	0	0	NA	NA	I-E	2	2	TypeI-E	cas3,csa3,cas8e,cas7,cas5,cas6e,cas2,DEDDh,DinG,c2c9_V-U4,PrimPol	NA,NA	NA|600aa|up_9|CP023673.1_998247_1000047_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_8|CP023673.1_1000046_1001759_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_7|CP023673.1_1001833_1002568_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_6|CP023673.1_1002832_1002985_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_5|CP023673.1_1003177_1005877_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|520aa|up_4|CP023673.1_1005974_1007534_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas7|424aa|up_3|CP023673.1_1007530_1008802_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_2|CP023673.1_1008812_1009559_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_1|CP023673.1_1009540_1010191_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas2|98aa|up_0|CP023673.1_1011106_1011400_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|CP023673.1_1011728_1012766_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP023673.1_1013017_1013926_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|CP023673.1_1013927_1015355_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP023673.1_1015354_1015960_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|CP023673.1_1016009_1016333_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP023673.1_1016526_1016838_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP023673.1_1016856_1017567_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP023673.1_1017566_1018046_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP023673.1_1018042_1019092_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP023673.1_1019072_1019834_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_002863885.1_ASM286388v1	CP023673	Escherichia coli strain SMN013SH2 chromosome, complete genome	4	2315314-2315437	3	CRISPRCasFinder	no	DEDDh	cas3,csa3,cas8e,cas7,cas5,cas6e,cas2,DEDDh,DinG,c2c9_V-U4,PrimPol	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cas7,cas5,cas6e,cas2,DEDDh,DinG,c2c9_V-U4,PrimPol	NA,NA|75aa|down_7|CP023673.1_2324018_2324243_-,NA|30aa|down_8|CP023673.1_2324329_2324419_+	NA|79aa|up_9|CP023673.1_2304222_2304459_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_8|CP023673.1_2304769_2306182_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_7|CP023673.1_2306738_2306948_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_6|CP023673.1_2307403_2308030_+	PRK09898, PRK09898, ferredoxin-like protein	NA|216aa|up_5|CP023673.1_2310154_2310802_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|CP023673.1_2310865_2311534_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|CP023673.1_2311530_2312316_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|CP023673.1_2312319_2313132_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|CP023673.1_2313143_2314748_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|CP023673.1_2314873_2315179_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|CP023673.1_2315746_2317003_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|CP023673.1_2317043_2318417_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|CP023673.1_2318631_2319273_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|CP023673.1_2319312_2320461_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|CP023673.1_2320752_2321964_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|CP023673.1_2322076_2323009_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|CP023673.1_2323005_2324031_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|75aa|down_7|CP023673.1_2324018_2324243_-	NA	NA|30aa|down_8|CP023673.1_2324329_2324419_+	NA	NA|390aa|down_9|CP023673.1_2324584_2325754_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
GCA_002863885.1_ASM286388v1	CP023673	Escherichia coli strain SMN013SH2 chromosome, complete genome	6	3458847-3458991	5	CRISPRCasFinder	no		cas3,csa3,cas8e,cas7,cas5,cas6e,cas2,DEDDh,DinG,c2c9_V-U4,PrimPol	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cas7,cas5,cas6e,cas2,DEDDh,DinG,c2c9_V-U4,PrimPol	NA|94aa|up_8|CP023673.1_3451211_3451493_+,NA|104aa|up_2|CP023673.1_3455696_3456008_+,NA	NA|186aa|up_9|CP023673.1_3450643_3451201_+	pfam05869, Dam, DNA N-6-adenine-methyltransferase (Dam)	NA|94aa|up_8|CP023673.1_3451211_3451493_+	NA	NA|86aa|up_7|CP023673.1_3451591_3451849_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|405aa|up_6|CP023673.1_3451854_3453068_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|123aa|up_5|CP023673.1_3453522_3453891_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|203aa|up_4|CP023673.1_3454034_3454643_+	pfam13935, Ead_Ea22, Ead/Ea22-like protein	NA|233aa|up_3|CP023673.1_3454773_3455472_+	PHA02067, PHA02067, hypothetical protein	NA|104aa|up_2|CP023673.1_3455696_3456008_+	NA	NA|357aa|up_1|CP023673.1_3456292_3457363_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|CP023673.1_3457497_3458781_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|61aa|down_0|CP023673.1_3461090_3461273_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|CP023673.1_3461455_3462889_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|CP023673.1_3462964_3464017_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|232aa|down_3|CP023673.1_3464535_3465230_-	pfam03400, DDE_Tnp_IS1, IS1 transposase	NA|209aa|down_4|CP023673.1_3465301_3465928_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_5|CP023673.1_3465968_3466964_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_6|CP023673.1_3467118_3467937_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_7|CP023673.1_3467937_3468996_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_8|CP023673.1_3468998_3469688_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_9|CP023673.1_3469687_3470461_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional
GCA_002863885.1_ASM286388v1	CP023673	Escherichia coli strain SMN013SH2 chromosome, complete genome	7	4197977-4198092	6	CRISPRCasFinder	no		cas3,csa3,cas8e,cas7,cas5,cas6e,cas2,DEDDh,DinG,c2c9_V-U4,PrimPol	Orphan	AACGCCTGATGCGACGCTGACGCGTCTTATC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cas7,cas5,cas6e,cas2,DEDDh,DinG,c2c9_V-U4,PrimPol	NA,NA	NA|393aa|up_9|CP023673.1_4186036_4187215_-	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter	NA|44aa|up_8|CP023673.1_4187316_4187448_-	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|552aa|up_7|CP023673.1_4187536_4189192_+	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|328aa|up_6|CP023673.1_4189355_4190339_+	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|537aa|up_5|CP023673.1_4190314_4191925_+	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|233aa|up_4|CP023673.1_4191908_4192607_+	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|255aa|up_3|CP023673.1_4192676_4193441_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|293aa|up_2|CP023673.1_4193526_4194405_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|567aa|up_1|CP023673.1_4194743_4196444_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_0|CP023673.1_4196454_4197957_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|down_0|CP023673.1_4198156_4198852_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|784aa|down_1|CP023673.1_4198926_4201278_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|down_2|CP023673.1_4201441_4204348_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|down_3|CP023673.1_4204359_4205019_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|272aa|down_4|CP023673.1_4205135_4205951_-	PRK09430, djlA, co-chaperone DjlA	NA|785aa|down_5|CP023673.1_4206205_4208560_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_6|CP023673.1_4208612_4209899_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_7|CP023673.1_4209898_4210888_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_8|CP023673.1_4210884_4211706_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|126aa|down_9|CP023673.1_4211708_4212086_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed
