The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP022279	Escherichia coli strain STEC299 chromosome, complete genome	4907118	45004	57177	4907118	integrase	Enterobacteria_phage(88.89%)	14	46093:46115	57338:57360
AUM05976.1|45004_46042_-	hydroxyacid dehydrogenase	NA	Q9JMN3	Wolbachia_phage	43.6	5.7e-73
46093:46115	attL	TTTGGCGGAAGATCACAGGAGTC	NA	NA	NA	NA
AUM05977.1|46239_46386_-|integrase	attP region and P4int integrase	integrase	NA	NA	NA	NA
AUM05978.1|46590_48924_-	DNA primase	NA	Q7M2A8	Enterobacteria_phage	99.0	0.0e+00
AUM05979.1|48938_49259_-	hypothetical protein	NA	NA	NA	NA	NA
AUM05980.1|49394_49850_-	hypothetical protein	NA	Q7M298	Enterobacteria_phage	99.1	1.6e-64
AUM05981.1|49842_50130_-	Derepression protein	NA	Q7M2A0	Enterobacteria_phage	97.9	8.6e-48
AUM05982.1|50122_50722_-	Ash-like/host cell division inhibitor Icd-like protein	NA	Q7M2A7	Enterobacteria_phage	81.8	3.0e-50
AUM05983.1|50718_50985_-	hypothetical protein	NA	Q7M299	Enterobacteria_phage	100.0	4.9e-45
AUM05984.1|51536_52271_+	glycoprotein 3	NA	Q7M2A2	Enterobacteria_phage	98.0	1.3e-127
AUM05985.1|52267_52768_+	transactivation protein	NA	NA	NA	NA	NA
AUM05986.1|52841_53414_+	Polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	96.8	6.5e-95
AUM05987.1|53736_55146_+	maturase	NA	NA	NA	NA	NA
AUM10481.1|55340_55982_+	hypothetical protein	NA	NA	NA	NA	NA
AUM05988.1|55998_57177_-|integrase	integrase	integrase	Q7M297	Enterobacteria_phage	91.2	1.1e-208
57338:57360	attR	TTTGGCGGAAGATCACAGGAGTC	NA	NA	NA	NA
>prophage 2
CP022279	Escherichia coli strain STEC299 chromosome, complete genome	4907118	1053545	1060685	4907118		Escherichia_phage(83.33%)	6	NA	NA
AUM06907.1|1053545_1054184_-	class II aldolase	NA	A0A077SK32	Escherichia_phage	74.5	1.8e-82
AUM06908.1|1054180_1055443_-	hypothetical protein	NA	A0A077SLJ7	Escherichia_phage	61.4	3.7e-135
AUM06909.1|1055439_1056348_-	oxidoreductase	NA	A0A077SLF7	Escherichia_phage	76.9	5.1e-118
AUM06910.1|1056543_1057311_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	57.4	9.7e-70
AUM06911.1|1057361_1058018_-	serine/threonine protein phosphatase	NA	A0A077SLQ6	Escherichia_phage	46.6	8.6e-51
AUM06912.1|1058123_1060685_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.8	1.6e-31
>prophage 3
CP022279	Escherichia coli strain STEC299 chromosome, complete genome	4907118	1635684	1645126	4907118		Enterobacteria_phage(85.71%)	10	NA	NA
AUM07420.1|1635684_1636611_+	ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	2.2e-23
AUM07421.1|1636615_1637347_+	osmoprotectant uptake system permease	NA	NA	NA	NA	NA
AUM07422.1|1637327_1637435_-	hypothetical protein	NA	NA	NA	NA	NA
AUM07423.1|1637494_1638226_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	99.0	2.2e-111
AUM07424.1|1638447_1640133_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	99.5	9.5e-304
AUM07425.1|1640129_1640849_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AUM07426.1|1640895_1641366_+	hypothetical protein	NA	Q9EYF4	Enterobacteria_phage	100.0	1.8e-82
AUM07427.1|1641406_1641868_-	hypothetical protein	NA	Q9EYF5	Enterobacteria_phage	99.3	3.2e-76
AUM07428.1|1641992_1643993_-	hypothetical protein	NA	Q9EYF6	Enterobacteria_phage	96.3	0.0e+00
AUM07429.1|1643989_1645126_-	hypothetical protein	NA	Q9EYF7	Enterobacteria_phage	98.0	7.7e-164
>prophage 4
CP022279	Escherichia coli strain STEC299 chromosome, complete genome	4907118	1845615	1971831	4907118	transposase,tail,head,lysis,terminase,capsid,portal,integrase,holin	Escherichia_phage(32.0%)	152	1958553:1958568	1978620:1978635
AUM07595.1|1845615_1846878_-|integrase	integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	39.0	6.2e-74
AUM10541.1|1847215_1848013_-	protein MtfA	NA	NA	NA	NA	NA
AUM07596.1|1848248_1849274_-|integrase	integrase	integrase	A0A192Y7M7	Salmonella_phage	56.7	7.5e-102
AUM07597.1|1849273_1849477_-	hypothetical protein	NA	NA	NA	NA	NA
AUM07598.1|1849535_1851971_-	exonuclease	NA	A0A192Y6E0	Salmonella_phage	54.4	2.0e-52
AUM07599.1|1852066_1852255_-	DUF1482 domain-containing protein	NA	NA	NA	NA	NA
AUM07600.1|1852251_1852440_-	cell division inhibitor	NA	NA	NA	NA	NA
AUM10543.1|1852991_1853213_+	hypothetical protein	NA	NA	NA	NA	NA
AUM10542.1|1853202_1853583_-	hypothetical protein	NA	NA	NA	NA	NA
AUM07601.1|1853594_1853747_-	DUF1391 domain-containing protein	NA	M4QQ57	Salicola_phage	53.5	3.3e-06
AUM07602.1|1854021_1854312_-	plasmid stabilization protein ParE	NA	NA	NA	NA	NA
AUM07603.1|1854311_1854503_-	antitoxin	NA	NA	NA	NA	NA
AUM07604.1|1854520_1855021_-	transcriptional regulator	NA	A0A0U2QW76	Escherichia_phage	54.5	1.4e-16
AUM07605.1|1855128_1855392_+	transcriptional regulator	NA	NA	NA	NA	NA
AUM07606.1|1855388_1855814_+	Rha family transcriptional regulator	NA	NA	NA	NA	NA
AUM10544.1|1855836_1856805_+	DNA-binding protein	NA	U5P0A0	Shigella_phage	52.7	4.8e-74
AUM07607.1|1856811_1857558_+	DNA replication protein DnaC	NA	A0A088CBP4	Shigella_phage	83.4	3.1e-113
AUM07608.1|1857579_1858302_+	hypothetical protein	NA	A0A0U2SAW4	Escherichia_phage	66.9	1.1e-80
AUM10545.1|1858334_1858616_+	DNA-binding protein	NA	A0A222YXX1	Escherichia_phage	73.1	1.8e-29
AUM07609.1|1858612_1858909_+	hypothetical protein	NA	A0A0U2SAZ1	Escherichia_phage	90.5	3.2e-45
AUM10546.1|1859431_1859683_+	hypothetical protein	NA	Q9G078	Enterobacteria_phage	70.7	1.3e-12
AUM10547.1|1859784_1859889_+	hypothetical protein	NA	NA	NA	NA	NA
AUM07610.1|1860060_1860705_-	transcriptional regulator	NA	A0A0F7L444	uncultured_marine_virus	50.7	9.6e-55
AUM07611.1|1860689_1861916_-	phosphoadenosine phosphosulfate reductase	NA	A0A068F1U8	Mycobacterium_phage	32.5	1.9e-59
AUM07612.1|1862132_1862405_+	hypothetical protein	NA	I6PCV7	Cronobacter_phage	50.8	9.4e-12
AUM07613.1|1862406_1863456_+	hypothetical protein	NA	U5P0K4	Shigella_phage	53.7	5.0e-109
AUM07614.1|1863825_1864647_+	antitermination protein	NA	K7P7B9	Enterobacteria_phage	60.1	2.2e-80
AUM07615.1|1864874_1865072_+	TrmB family transcriptional regulator	NA	S5MQK8	Escherichia_phage	100.0	6.1e-29
AUM07616.1|1865222_1866281_+	DNA adenine methylase	NA	S5MDR0	Escherichia_phage	93.5	1.3e-197
AUM07617.1|1866870_1867206_-	anti-adapter protein IraM	NA	Q8HAJ1	Enterobacteria_phage	81.3	4.5e-48
AUM07618.1|1868270_1869461_+	hypothetical protein	NA	A0A2R2Z342	Escherichia_phage	40.6	9.7e-77
AUM07619.1|1869615_1869801_+	DUF1378 domain-containing protein	NA	S5MBZ5	Escherichia_phage	58.3	4.2e-11
AUM07620.1|1869706_1870099_+	hypothetical protein	NA	NA	NA	NA	NA
AUM07621.1|1870176_1870392_+|holin	holin	holin	G9L6J5	Escherichia_phage	97.2	1.7e-32
AUM07622.1|1870396_1870930_+	lysozyme	NA	A0A1U9AJ98	Stx1_converting_phage	94.9	1.4e-99
AUM07623.1|1871151_1871265_+	hypothetical protein	NA	A0A2L1IV24	Escherichia_phage	100.0	6.6e-12
AUM07624.1|1871432_1871900_+|lysis	lysis protein	lysis	Q6H9V3	Enterobacteria_phage	78.6	4.7e-59
AUM07625.1|1871923_1872148_+	hypothetical protein	NA	NA	NA	NA	NA
AUM10548.1|1872157_1872286_-	hypothetical protein	NA	NA	NA	NA	NA
AUM07626.1|1873157_1873328_-	hypothetical protein	NA	H6WZK6	Escherichia_phage	90.4	1.3e-19
AUM07627.1|1873370_1873736_+	HNH endonuclease	NA	A0A0P0ZCH0	Stx2-converting_phage	87.6	4.9e-56
AUM07628.1|1874029_1874593_+|terminase	terminase	terminase	B6DZ97	Enterobacteria_phage	78.0	6.9e-65
AUM07629.1|1874589_1876251_+|terminase	terminase	terminase	H6WZK9	Escherichia_phage	98.4	0.0e+00
AUM07630.1|1876314_1878252_+|capsid	phage major capsid protein	capsid	H6WZL0	Escherichia_phage	97.8	0.0e+00
AUM07631.1|1878296_1878518_+	hypothetical protein	NA	B6DZA0	Enterobacteria_phage	89.0	1.1e-29
AUM07632.1|1880882_1881209_+|head,tail	phage gp6-like head-tail connector protein	head,tail	B6ETF0	Enterobacteria_phage	100.0	7.0e-54
AUM07633.1|1881219_1881570_+|head,tail	head-tail adaptor protein	head,tail	A0A0P0ZB28	Stx2-converting_phage	98.3	1.0e-58
AUM07634.1|1881566_1882013_+	hypothetical protein	NA	A0A0N7KZI9	Stx2-converting_phage	97.3	2.9e-74
AUM07635.1|1882009_1882354_+	hypothetical protein	NA	A0A0N7KZG1	Stx2-converting_phage	91.2	6.5e-50
AUM07636.1|1882413_1883130_+|tail	phage tail protein	tail	B6DZA6	Enterobacteria_phage	96.6	1.4e-123
AUM07637.1|1883144_1883519_+|tail	phage tail protein	tail	A0A0P0ZE84	Stx2-converting_phage	96.8	2.1e-62
AUM07638.1|1883542_1883824_+|tail	phage tail protein	tail	H6WZM0	Escherichia_phage	93.5	1.3e-43
AUM07639.1|1883887_1884301_+	hypothetical protein	NA	B9UDL3	Salmonella_phage	68.1	5.1e-49
AUM07640.1|1884364_1887610_+|tail	phage tail tape measure protein	tail	A0A0P0ZCJ4	Stx2-converting_phage	87.9	0.0e+00
AUM10549.1|1887602_1887944_+|tail	phage tail protein	tail	A0A0P0ZDL9	Stx2-converting_phage	83.2	4.5e-51
AUM07641.1|1887943_1888642_+|tail	phage minor tail protein L	tail	H6WZM3	Escherichia_phage	97.0	1.1e-128
AUM07642.1|1888647_1889391_+|tail	phage tail protein	tail	Q6H9T4	Enterobacteria_phage	93.9	6.4e-143
AUM07643.1|1889288_1889969_+|tail	phage tail protein	tail	Q6H9T3	Enterobacteria_phage	89.4	1.5e-103
AUM07644.1|1890221_1893608_+|tail	phage tail protein	tail	A0A0P0ZCI5	Stx2-converting_phage	86.2	0.0e+00
AUM07645.1|1893675_1894275_+	Ail/Lom family protein	NA	Q9EV15	Enterobacteria_phage	88.9	4.7e-96
AUM07646.1|1894338_1895397_+|tail	phage tail protein	tail	Q9LA62	Enterobacterial_phage	69.9	1.0e-32
AUM10550.1|1895479_1896013_+	hypothetical protein	NA	A0A2L1IV45	Escherichia_phage	44.7	1.2e-34
AUM07647.1|1896170_1896527_-	hypothetical protein	NA	A0A192Y6F0	Salmonella_phage	43.6	8.6e-21
AUM07648.1|1896571_1896793_-	hypothetical protein	NA	A0A192Y5V6	Salmonella_phage	45.8	3.7e-06
AUM07649.1|1897354_1898485_+	hypothetical protein	NA	A0A2L1IV32	Escherichia_phage	55.6	3.5e-84
AUM07650.1|1898576_1899104_+	hypothetical protein	NA	Q9LA55	Enterobacteria_phage	73.9	1.6e-60
AUM07651.1|1899347_1899680_-	hypothetical protein	NA	NA	NA	NA	NA
AUM07652.1|1900003_1901029_-|integrase	integrase	integrase	A0A192Y7M7	Salmonella_phage	56.7	7.5e-102
AUM07653.1|1901028_1901232_-	hypothetical protein	NA	NA	NA	NA	NA
AUM07654.1|1901290_1903726_-	exonuclease	NA	A0A192Y6E0	Salmonella_phage	54.4	2.0e-52
AUM07655.1|1903821_1904010_-	DUF1482 domain-containing protein	NA	NA	NA	NA	NA
AUM07656.1|1904006_1904195_-	cell division inhibitor	NA	NA	NA	NA	NA
AUM10552.1|1904746_1904968_+	hypothetical protein	NA	NA	NA	NA	NA
AUM10551.1|1904957_1905338_-	hypothetical protein	NA	NA	NA	NA	NA
AUM07657.1|1905349_1905502_-	DUF1391 domain-containing protein	NA	M4QQ57	Salicola_phage	53.5	3.3e-06
AUM07658.1|1905769_1906189_-	hypothetical protein	NA	K7PK07	Enterobacteria_phage	65.1	4.0e-25
AUM07659.1|1906289_1906571_+	Cro/Cl family transcriptional regulator	NA	K7PHA1	Enterobacteria_phage	72.6	8.5e-24
AUM07660.1|1906554_1906980_+	Rha family transcriptional regulator	NA	NA	NA	NA	NA
AUM07661.1|1907051_1908122_+	phage replisome organizer	NA	A0A088CD36	Shigella_phage	61.1	1.8e-58
AUM07662.1|1908162_1908573_+	hypothetical protein	NA	A0A0U2QQN3	Escherichia_phage	91.7	3.4e-61
AUM07663.1|1908946_1911238_+	hypothetical protein	NA	NA	NA	NA	NA
AUM07664.1|1911715_1911928_+	Hok/Gef family protein	NA	A0A0U2QV81	Escherichia_phage	72.9	1.3e-16
AUM07665.1|1912071_1912464_+	hypothetical protein	NA	NA	NA	NA	NA
AUM07666.1|1912760_1913039_+	hypothetical protein	NA	I6PCV7	Cronobacter_phage	46.9	2.2e-11
AUM07667.1|1913040_1914096_+	hypothetical protein	NA	A0A291AWV9	Escherichia_phage	47.8	1.7e-88
AUM07668.1|1914096_1914477_+	hypothetical protein	NA	V5URS4	Shigella_phage	61.8	4.2e-34
AUM07669.1|1914473_1915295_+	antitermination protein	NA	K7P7B9	Enterobacteria_phage	61.9	2.8e-83
AUM07670.1|1916467_1918318_+	9-O-acetyl-N-acetylneuraminic acid deacetylase	NA	B6DZ89	Enterobacteria_phage	98.9	0.0e+00
AUM07671.1|1918752_1918968_+|holin	holin	holin	Q6H9V8	Enterobacteria_phage	95.8	3.8e-32
AUM07672.1|1918972_1919593_+	hypothetical protein	NA	Q08JA0	Stx2-converting_phage	90.0	7.1e-55
AUM07673.1|1919771_1919960_+	hypothetical protein	NA	Q08JA0	Stx2-converting_phage	74.2	3.8e-20
AUM07674.1|1919996_1920530_+	lysozyme	NA	Q6H9V6	Enterobacteria_phage	97.7	2.5e-101
AUM07675.1|1920607_1920820_+	hypothetical protein	NA	A0A0M4S639	Salmonella_phage	60.5	2.7e-06
AUM10553.1|1921084_1921171_+	hypothetical protein	NA	NA	NA	NA	NA
AUM07676.1|1921172_1921640_+|lysis	lysis protein	lysis	Q7AYI6	Enterobacteria_phage	92.9	1.1e-71
AUM07677.1|1921722_1921863_+	hypothetical protein	NA	NA	NA	NA	NA
AUM07678.1|1922105_1922420_+	PerC family transcriptional regulator	NA	NA	NA	NA	NA
AUM07679.1|1922501_1922726_-	DUF3950 domain-containing protein	NA	A0A0K2FIR8	Escherichia_phage	88.7	2.9e-19
AUM07680.1|1923114_1923660_+|terminase	terminase small subunit	terminase	A0A0K2FIG2	Enterobacteria_phage	99.4	4.7e-95
AUM07681.1|1923634_1925560_+|terminase	terminase	terminase	A0A0K2FJ14	Enterobacteria_phage	99.4	0.0e+00
AUM07682.1|1925556_1925763_+|head,tail	Lambda prophage-derived head-to-tail joining protein W	head,tail	A0A2R9YJL2	Escherichia_phage	100.0	5.8e-30
AUM07683.1|1925759_1927361_+|portal	phage portal protein	portal	A0A0K2FJC0	Enterobacteria_phage	99.1	1.9e-309
AUM07684.1|1927341_1928661_+|capsid	capsid assembly protein	capsid	A0A2I6TC87	Escherichia_phage	98.4	9.0e-233
AUM07685.1|1928670_1929003_+|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	100.0	1.7e-55
AUM07686.1|1929058_1930084_+|capsid	minor capsid protein E	capsid	C6ZCY2	Enterobacteria_phage	97.1	3.4e-187
AUM07687.1|1930125_1930521_+	DNA-packaging protein FI	NA	A0A2R9YJP4	Escherichia_phage	92.4	2.0e-55
AUM07688.1|1930532_1930886_+|tail	phage tail protein	tail	A0A2R9YJJ5	Escherichia_phage	98.3	2.6e-62
AUM07689.1|1930897_1931476_+|tail	phage tail protein	tail	A0A2R9YJK4	Escherichia_phage	99.5	3.5e-80
AUM07690.1|1931472_1931868_+|tail	phage tail protein	tail	A0A0K2FIF4	Enterobacteria_phage	100.0	1.0e-70
AUM10554.1|1931875_1932616_+|tail	phage tail protein	tail	A0A0K2FJ05	Enterobacteria_phage	100.0	7.8e-133
AUM07691.1|1932631_1933054_+|tail	phage minor tail protein G	tail	A0A0K2FIQ8	Enterobacteria_phage	100.0	6.7e-73
AUM07692.1|1933035_1933470_+|tail	phage tail assembly protein T	tail	A0A0K2FJB3	Enterobacteria_phage	100.0	6.9e-65
AUM07693.1|1933462_1936024_+|tail	phage tail tape measure protein	tail	A0A0K2FI43	Enterobacteria_phage	92.6	0.0e+00
AUM07694.1|1936020_1936350_+|tail	phage tail protein	tail	A0A2R9YJM0	Escherichia_phage	92.7	6.0e-53
AUM07695.1|1936349_1937048_+|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	98.7	2.1e-132
AUM07696.1|1937053_1937797_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	94.7	6.1e-146
AUM07697.1|1937694_1938366_+|tail	phage tail protein	tail	A0A2R9YJH6	Escherichia_phage	97.8	2.9e-102
AUM07698.1|1938426_1941906_+	host specificity protein J	NA	A0A291AWT4	Escherichia_phage	90.1	0.0e+00
AUM07699.1|1941973_1942573_+	Ail/Lom family protein	NA	A0A0P0ZCF6	Stx2-converting_phage	91.5	3.7e-101
AUM07700.1|1943954_1944224_+|tail	phage tail protein	tail	H6WZN0	Escherichia_phage	98.9	1.1e-44
AUM07701.1|1944334_1944916_+	hypothetical protein	NA	H6WZN1	Escherichia_phage	54.3	4.6e-48
AUM07702.1|1944988_1945618_+	T3SS effector protein NleG8	NA	B6DZB9	Enterobacteria_phage	91.5	5.1e-77
AUM07703.1|1945699_1946341_+	T3SS effector NleG	NA	B6DZC0	Enterobacteria_phage	100.0	6.8e-109
AUM07704.1|1946371_1946539_+|capsid	capsid protein	capsid	NA	NA	NA	NA
AUM07705.1|1946667_1946967_+	hypothetical protein	NA	NA	NA	NA	NA
AUM07706.1|1947075_1947912_+	hypothetical protein	NA	NA	NA	NA	NA
AUM07707.1|1948128_1948347_+	hypothetical protein	NA	A0A2H4J8C8	uncultured_Caudovirales_phage	51.9	1.2e-09
AUM07708.1|1948428_1948719_+	hypothetical protein	NA	NA	NA	NA	NA
AUM07709.1|1948771_1949068_+	hypothetical protein	NA	NA	NA	NA	NA
AUM07710.1|1949141_1949384_+	DNA-binding protein	NA	NA	NA	NA	NA
AUM07711.1|1949492_1949843_+	hypothetical protein	NA	NA	NA	NA	NA
AUM07712.1|1949907_1950312_-	DNA-binding protein	NA	NA	NA	NA	NA
AUM07713.1|1950469_1950949_-	DUF4756 domain-containing protein	NA	NA	NA	NA	NA
AUM07714.1|1951103_1951649_-	replication protein	NA	NA	NA	NA	NA
AUM07715.1|1952551_1952821_+	hypothetical protein	NA	NA	NA	NA	NA
AUM07716.1|1952904_1953291_+	hypothetical protein	NA	NA	NA	NA	NA
AUM07717.1|1953346_1954327_+	hypothetical protein	NA	NA	NA	NA	NA
AUM07718.1|1955290_1956160_-	hypothetical protein	NA	A0A2H4J8H9	uncultured_Caudovirales_phage	38.6	2.7e-15
AUM07719.1|1956521_1957025_+	hypothetical protein	NA	NA	NA	NA	NA
AUM07720.1|1957076_1959746_+	hypothetical protein	NA	NA	NA	NA	NA
1958553:1958568	attL	GATACAACGGCAGCAA	NA	NA	NA	NA
AUM10555.1|1960196_1960931_+	hypothetical protein	NA	NA	NA	NA	NA
AUM07721.1|1961812_1962190_+	hypothetical protein	NA	NA	NA	NA	NA
AUM07722.1|1962823_1963828_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUM07723.1|1964303_1964513_+	hypothetical protein	NA	NA	NA	NA	NA
AUM07724.1|1964689_1964998_+	hypothetical protein	NA	NA	NA	NA	NA
AUM07725.1|1965001_1965880_-	hypothetical protein	NA	NA	NA	NA	NA
AUM07726.1|1966184_1966550_+	hypothetical protein	NA	NA	NA	NA	NA
AUM07727.1|1966546_1966852_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
AUM07728.1|1967248_1967806_+	type IV pilin	NA	NA	NA	NA	NA
AUM07729.1|1967858_1969322_+	prepilin-type cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
AUM07730.1|1969434_1970448_-	hypothetical protein	NA	NA	NA	NA	NA
AUM07731.1|1970580_1971831_-|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.5	2.9e-79
1978620:1978635	attR	GATACAACGGCAGCAA	NA	NA	NA	NA
>prophage 5
CP022279	Escherichia coli strain STEC299 chromosome, complete genome	4907118	2052195	2104856	4907118	plate,transposase,tail,tRNA,protease,head	Shigella_phage(56.41%)	69	NA	NA
AUM07818.1|2052195_2053929_-|tRNA	arginine--tRNA ligase	tRNA	A0A2K9L6Z2	Tupanvirus	33.7	8.8e-87
AUM07819.1|2053962_2054142_+	hypothetical protein	NA	NA	NA	NA	NA
AUM07820.1|2054144_2054711_+	VOC family protein	NA	NA	NA	NA	NA
AUM07821.1|2054724_2055471_+	copper homeostasis protein CutC	NA	NA	NA	NA	NA
AUM07822.1|2055858_2056959_+	cytochrome C	NA	NA	NA	NA	NA
AUM07823.1|2057701_2058439_-	protein mom	NA	A0A0C4UQZ7	Shigella_phage	77.7	1.9e-102
AUM07824.1|2058392_2058593_-	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AUM07825.1|2059248_2059449_-	hypothetical protein	NA	NA	NA	NA	NA
AUM07826.1|2059523_2059769_-	hypothetical protein	NA	NA	NA	NA	NA
AUM07827.1|2059804_2059987_-	DUF1378 domain-containing protein	NA	A0A2R2Z345	Escherichia_phage	56.1	3.5e-10
AUM07828.1|2060115_2062248_-	sialate O-acetylesterase	NA	B6DZ89	Enterobacteria_phage	53.0	2.3e-169
AUM07829.1|2062333_2062900_-	DNA-invertase	NA	A0A0F7LA37	Escherichia_phage	75.8	3.9e-76
AUM07830.1|2062915_2063110_-	hypothetical protein	NA	NA	NA	NA	NA
AUM07831.1|2063120_2063336_+|tail	phage tail protein	tail	NA	NA	NA	NA
AUM10560.1|2063422_2063944_+|tail	phage tail protein	tail	A0A0U2QV64	Escherichia_phage	46.8	3.1e-43
AUM07832.1|2063977_2064889_-|tail	phage tail protein	tail	C9DGQ8	Escherichia_phage	39.5	3.7e-28
AUM07833.1|2064888_2065449_-	hypothetical protein	NA	C9DGQ7	Escherichia_phage	48.6	3.5e-45
AUM07834.1|2065439_2066522_-	hypothetical protein	NA	A0A0C4UQU9	Shigella_phage	53.2	1.1e-98
AUM07835.1|2066521_2066959_-	hypothetical protein	NA	A0A0C4UR04	Shigella_phage	57.6	1.6e-40
AUM07836.1|2066951_2067566_-|plate	phage baseplate assembly protein V	plate	A0A0C4UQZ3	Shigella_phage	50.8	1.2e-51
AUM07837.1|2067555_2068683_-|tail	phage tail protein	tail	C9DGQ3	Escherichia_phage	47.7	5.7e-95
AUM07838.1|2068666_2070025_-	multidrug DMT transporter permease	NA	A0A0C4UR32	Shigella_phage	29.9	2.8e-48
AUM07839.1|2070011_2072069_-|tail	tail tape measure protein	tail	A0A0C4UQU8	Shigella_phage	38.9	8.3e-76
AUM07840.1|2072196_2072673_-	hypothetical protein	NA	A0A0C4UR03	Shigella_phage	50.4	9.4e-23
AUM07841.1|2072687_2073053_-|tail	phage tail protein	tail	NA	NA	NA	NA
AUM07842.1|2073061_2074543_-|tail	phage tail protein	tail	A0A0C4UQS0	Shigella_phage	52.7	2.2e-134
AUM07843.1|2074542_2074821_-	hypothetical protein	NA	NA	NA	NA	NA
AUM07844.1|2074824_2075388_-	hypothetical protein	NA	A0A0C4UQU7	Shigella_phage	48.3	5.7e-43
AUM07845.1|2075384_2075804_-	hypothetical protein	NA	A0A0C4UR02	Shigella_phage	54.3	6.1e-34
AUM07846.1|2075800_2076208_-	hypothetical protein	NA	NA	NA	NA	NA
AUM07847.1|2076251_2077199_-|head	head protein	head	A0A0C4UQR9	Shigella_phage	66.9	7.9e-122
AUM07848.1|2077198_2078323_-|protease	protease	protease	A0A0C4UQU6	Shigella_phage	47.6	2.4e-77
AUM07849.1|2078499_2078973_-	phage virion morphogenesis protein	NA	A0A0C4UR01	Shigella_phage	54.6	7.8e-38
AUM07850.1|2079098_2080424_-|head	phage head morphogenesis protein	head	A0A0C4UQY9	Shigella_phage	59.3	5.4e-153
AUM07851.1|2080407_2081997_-	hypothetical protein	NA	A0A0C4UQR8	Shigella_phage	57.9	1.1e-168
AUM07852.1|2081996_2083661_-	hypothetical protein	NA	A0A0C4UR29	Shigella_phage	72.9	5.8e-229
AUM07853.1|2083660_2083909_-	hypothetical protein	NA	NA	NA	NA	NA
AUM07854.1|2083919_2084501_-	hypothetical protein	NA	A0A0C4UQU5	Shigella_phage	57.0	4.2e-49
AUM07855.1|2084503_2084794_-	hypothetical protein	NA	A0A0C4UR00	Shigella_phage	63.2	2.1e-25
AUM07856.1|2084786_2085098_-	hypothetical protein	NA	NA	NA	NA	NA
AUM07857.1|2085078_2085306_-	conjugal transfer protein TraR	NA	NA	NA	NA	NA
AUM07858.1|2085316_2085784_-	lysozyme	NA	B6SD19	Bacteriophage	50.7	4.6e-14
AUM07859.1|2085981_2086482_-	endolysin	NA	B6SD29	Bacteriophage	42.6	3.9e-27
AUM07860.1|2086553_2086976_-	transcriptional regulator	NA	NA	NA	NA	NA
AUM07861.1|2087046_2087556_-	hypothetical protein	NA	A0A0C4UQU3	Shigella_phage	43.1	3.1e-24
AUM07862.1|2087552_2087849_-	hypothetical protein	NA	NA	NA	NA	NA
AUM07863.1|2087838_2088036_-	hypothetical protein	NA	NA	NA	NA	NA
AUM07864.1|2088028_2088403_-	hypothetical protein	NA	NA	NA	NA	NA
AUM07865.1|2088399_2088585_-	hypothetical protein	NA	NA	NA	NA	NA
AUM07866.1|2088581_2089133_-	AsnC family protein	NA	NA	NA	NA	NA
AUM07867.1|2089129_2089651_-	hypothetical protein	NA	C9DGM0	Escherichia_phage	54.2	3.0e-46
AUM07868.1|2089650_2090184_-	hypothetical protein	NA	A0A0C4UQU2	Shigella_phage	67.8	1.1e-67
AUM07869.1|2090187_2090730_-	hypothetical protein	NA	A0A0C4UQZ6	Shigella_phage	40.0	8.4e-28
AUM07870.1|2090827_2091358_-	host-nuclease inhibitor protein Gam	NA	C9DGL8	Escherichia_phage	57.1	2.5e-48
AUM07871.1|2091369_2091666_-	hypothetical protein	NA	NA	NA	NA	NA
AUM07872.1|2091662_2091944_-	host nuclease inhibitor protein	NA	I6WB15	Burkholderia_virus	42.3	3.5e-09
AUM07873.1|2091945_2092173_-	hypothetical protein	NA	NA	NA	NA	NA
AUM07874.1|2092159_2092579_-	hypothetical protein	NA	NA	NA	NA	NA
AUM07875.1|2092591_2092813_-	hypothetical protein	NA	NA	NA	NA	NA
AUM07876.1|2092815_2093748_-	transcriptional regulator	NA	A0A0C4UQR3	Shigella_phage	49.0	8.1e-71
AUM07877.1|2093830_2095915_-|transposase	transposase	transposase	A0A2D1GNK9	Pseudomonas_phage	45.4	4.5e-154
AUM07878.1|2095895_2096141_-	transcriptional regulator	NA	M1PVU4	Vibrio_phage	58.7	1.3e-12
AUM07879.1|2096359_2096878_+	DNA-binding protein	NA	NA	NA	NA	NA
AUM07880.1|2099192_2100164_-|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	tRNA	NA	NA	NA	NA
AUM07881.1|2100160_2100904_-	carboxy-S-adenosyl-L-methionine synthase CmoA	NA	F5B419	Synechococcus_phage	30.0	4.6e-24
AUM07882.1|2100944_2101340_-	hypothetical protein	NA	NA	NA	NA	NA
AUM07883.1|2101392_2102211_-	DUF72 domain-containing protein	NA	Q859D1	Escherichia_coli_phage	98.4	3.2e-71
AUM07884.1|2102207_2102774_-	hydrolase	NA	NA	NA	NA	NA
AUM07885.1|2103083_2104856_+|tRNA	aspartate--tRNA ligase	tRNA	NA	NA	NA	NA
>prophage 6
CP022279	Escherichia coli strain STEC299 chromosome, complete genome	4907118	2365735	2470240	4907118	transposase,tail,protease,head,portal,terminase,capsid,lysis,integrase	Enterobacteria_phage(40.3%)	125	2362686:2362700	2421952:2421967
2362686:2362700	attL	ACCTCGTTAATCTGC	NA	NA	NA	NA
AUM08145.1|2365735_2366965_+|integrase	integrase	integrase	A0A2H4JB45	uncultured_Caudovirales_phage	55.4	4.6e-130
2362686:2362700	attL	ACCTCGTTAATCTGC	NA	NA	NA	NA
AUM08146.1|2367339_2367528_+	DNA-binding protein	NA	A0A2H4JB58	uncultured_Caudovirales_phage	64.2	5.9e-13
AUM10572.1|2368332_2368530_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA	NA
AUM08147.1|2368522_2368735_+	hypothetical protein	NA	NA	NA	NA	NA
AUM08148.1|2368724_2368964_+	hypothetical protein	NA	NA	NA	NA	NA
AUM08149.1|2368956_2369178_+	hypothetical protein	NA	NA	NA	NA	NA
AUM08150.1|2369417_2369717_+	hypothetical protein	NA	NA	NA	NA	NA
AUM08151.1|2369713_2371120_+	DNA primase	NA	A0A2H4JFA4	uncultured_Caudovirales_phage	56.2	4.8e-107
AUM08152.1|2371320_2371572_+	hypothetical protein	NA	NA	NA	NA	NA
AUM08153.1|2371922_2372195_+	PerC family transcriptional regulator	NA	NA	NA	NA	NA
AUM08154.1|2372241_2372544_+	hypothetical protein	NA	NA	NA	NA	NA
AUM08155.1|2372836_2373994_+|capsid	phage major capsid protein	capsid	A0A2H4JED2	uncultured_Caudovirales_phage	64.9	2.1e-137
2373322:2373336	attR	GCAGATTAACGAGGT	NA	NA	NA	NA
AUM08156.1|2374033_2374606_+	peptidase	NA	A0A2H4JB68	uncultured_Caudovirales_phage	63.0	8.0e-61
2373322:2373336	attR	GCAGATTAACGAGGT	NA	NA	NA	NA
AUM08157.1|2374607_2375819_+|portal	phage portal protein	portal	A0A2H4JFJ9	uncultured_Caudovirales_phage	79.5	1.9e-189
AUM08158.1|2375815_2376154_+|head,tail	head-tail adaptor protein	head,tail	A0A2H4JHK5	uncultured_Caudovirales_phage	53.6	1.7e-31
AUM08159.1|2376150_2376447_+	hypothetical protein	NA	A0A2H4JD08	uncultured_Caudovirales_phage	65.3	2.4e-32
AUM08160.1|2376446_2376887_+	HNH endonuclease	NA	A0A2H4JAS8	uncultured_Caudovirales_phage	72.6	1.9e-62
AUM10573.1|2376879_2377053_+	hypothetical protein	NA	NA	NA	NA	NA
AUM08161.1|2377175_2377532_+|terminase	terminase	terminase	A0A2H4JHS3	uncultured_Caudovirales_phage	81.4	9.4e-52
AUM08162.1|2377515_2379177_+|terminase	terminase	terminase	A0A2H4JB64	uncultured_Caudovirales_phage	81.7	5.2e-278
AUM08163.1|2379190_2379472_+	hypothetical protein	NA	NA	NA	NA	NA
AUM10574.1|2379511_2379697_-	hypothetical protein	NA	NA	NA	NA	NA
AUM08164.1|2379732_2379936_-	hypothetical protein	NA	NA	NA	NA	NA
AUM08165.1|2380846_2381017_+	hypothetical protein	NA	NA	NA	NA	NA
AUM08166.1|2381123_2381489_+	multidrug transporter subunit MdtJ	NA	NA	NA	NA	NA
AUM08167.1|2381475_2381805_+	spermidine export protein MdtI	NA	NA	NA	NA	NA
AUM08168.1|2381843_2382665_-|protease	serine protease	protease	NA	NA	NA	NA
AUM08169.1|2382764_2382848_-	hypothetical protein	NA	NA	NA	NA	NA
AUM08170.1|2382940_2383276_-	acid-shock protein	NA	NA	NA	NA	NA
AUM08171.1|2386063_2387284_+	ROK family transcriptional regulator	NA	NA	NA	NA	NA
AUM08172.1|2387408_2388104_+	dethiobiotin synthase	NA	NA	NA	NA	NA
AUM08173.1|2388056_2389349_-	voltage-gated ClC-type chloride channel ClcB	NA	NA	NA	NA	NA
AUM08174.1|2389509_2390124_-	DMSO reductase maturation protein DsmD	NA	A0A077SLS7	Escherichia_phage	36.3	5.1e-29
AUM08175.1|2390166_2391021_-	dimethyl sulfoxide reductase	NA	NA	NA	NA	NA
AUM10575.1|2391645_2394069_-	dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	48.6	3.7e-208
AUM08176.1|2396754_2397060_-	hypothetical protein	NA	NA	NA	NA	NA
AUM08177.1|2397167_2397878_+	YnfC family lipoprotein	NA	NA	NA	NA	NA
AUM08178.1|2397880_2398441_-	spermidine acetyltransferase	NA	NA	NA	NA	NA
AUM08179.1|2398475_2398817_-	hypothetical protein	NA	NA	NA	NA	NA
AUM08180.1|2398951_2399278_+	hypothetical protein	NA	A0A218MNG8	uncultured_virus	54.5	2.9e-23
AUM08181.1|2399314_2399503_+	hypothetical protein	NA	NA	NA	NA	NA
AUM08182.1|2399483_2400698_+	starvation-sensing protein RspA	NA	Q6A202	Oenococcus_phage	29.5	2.8e-47
AUM08183.1|2400709_2401729_+	Zn-dependent oxidoreductase	NA	E3SJ82	Synechococcus_phage	25.9	5.7e-17
AUM08184.1|2401786_2401897_+	transporter	NA	NA	NA	NA	NA
AUM08185.1|2401916_2403212_-|integrase	site-specific integrase	integrase	B6DZ48	Enterobacteria_phage	62.3	6.7e-156
AUM08186.1|2403231_2403483_-	DNA-binding protein	NA	S4TND0	Salmonella_phage	50.0	2.2e-15
AUM08187.1|2403555_2406027_-	exonuclease	NA	A0A192Y6E0	Salmonella_phage	56.7	8.5e-59
AUM08188.1|2406120_2406312_-	DUF1482 domain-containing protein	NA	NA	NA	NA	NA
AUM08189.1|2406308_2406497_-	division inhibition protein DicB	NA	NA	NA	NA	NA
AUM08190.1|2406983_2407601_-	hypothetical protein	NA	NA	NA	NA	NA
AUM08191.1|2407560_2407716_-	DUF1391 domain-containing protein	NA	M4QQ57	Salicola_phage	53.2	5.2e-07
AUM08192.1|2407882_2408290_-	transcriptional regulator	NA	K7PM82	Enterobacteria_phage	54.7	4.4e-13
AUM08193.1|2408373_2408604_+	division inhibition gene dicB repressor	NA	NA	NA	NA	NA
AUM08194.1|2408587_2409109_+	hypothetical protein	NA	NA	NA	NA	NA
AUM08195.1|2409035_2410055_+	hypothetical protein	NA	U5P0A0	Shigella_phage	60.2	5.2e-55
AUM08196.1|2410095_2410518_+	hypothetical protein	NA	A0A0U2QQN3	Escherichia_phage	92.8	2.3e-65
AUM08197.1|2410514_2410748_+	methyltransferase	NA	I6S1S6	Salmonella_phage	67.9	2.9e-17
AUM08198.1|2410801_2411467_+	hypothetical protein	NA	NA	NA	NA	NA
AUM08199.1|2412025_2412238_+	Hok/Gef family protein	NA	A0A0U2QV81	Escherichia_phage	97.1	1.7e-29
AUM08200.1|2412791_2413814_+|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	99.7	5.4e-201
AUM08201.1|2413810_2414593_+|transposase	transposase	transposase	A0A2L1IVB6	Escherichia_phage	99.2	1.0e-138
AUM08202.1|2414731_2415010_+	hypothetical protein	NA	I6PCV7	Cronobacter_phage	48.4	5.7e-12
AUM08203.1|2415011_2416061_+	hypothetical protein	NA	A0A291AWV9	Escherichia_phage	57.9	2.0e-113
AUM08204.1|2416074_2416827_+	antitermination protein	NA	K7PGU5	Enterobacteria_phage	96.8	2.1e-133
AUM08205.1|2417987_2418173_-	hypothetical protein	NA	NA	NA	NA	NA
AUM08206.1|2418942_2419155_-	cold-shock protein CspF	NA	NA	NA	NA	NA
AUM08207.1|2419455_2419671_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	76.5	7.7e-25
AUM08208.1|2420424_2420640_+|lysis	lysis protein S	lysis	A5LH82	Enterobacteria_phage	94.4	1.1e-31
AUM08209.1|2420644_2420956_+	hypothetical protein	NA	K7PGU6	Enterobacteria_phage	63.6	1.0e-25
AUM08210.1|2420952_2421486_+	lysozyme from lambdoid prophage Qin	NA	K7PLY1	Enterobacteria_phage	92.7	8.4e-97
AUM08211.1|2421482_2421980_+	hypothetical protein	NA	A0A291LBG9	Klebsiella_phage	29.5	2.9e-06
AUM08212.1|2422343_2422556_+	cold-shock protein CspI	NA	A0A1W6JNX5	Morganella_phage	74.3	1.2e-22
AUM08213.1|2422566_2422755_+	cold-shock protein	NA	NA	NA	NA	NA
AUM10576.1|2422902_2423058_+	hypothetical protein	NA	NA	NA	NA	NA
AUM08214.1|2423230_2423404_+	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA	NA
AUM08215.1|2423555_2423966_-	hypothetical protein	NA	C6ZCX4	Enterobacteria_phage	91.2	5.0e-65
AUM08216.1|2423911_2424112_-	hypothetical protein	NA	C6ZCX4	Enterobacteria_phage	70.0	4.5e-11
AUM08217.1|2424266_2424473_+	hypothetical protein	NA	A0A0K2FJ18	Enterobacteria_phage	91.2	6.7e-26
AUM08218.1|2425018_2425558_+|terminase	terminase	terminase	A5LH26	Enterobacteria_phage	100.0	1.8e-94
AUM08219.1|2425566_2427666_+	DNA packaging protein	NA	A5LH27	Enterobacteria_phage	98.9	0.0e+00
AUM08220.1|2427662_2427875_+	hypothetical protein	NA	A5LH28	Enterobacteria_phage	100.0	1.1e-31
AUM08221.1|2427874_2429383_+|portal	phage portal protein	portal	K7PJP3	Enterobacteria_phage	99.8	1.6e-289
AUM08222.1|2429327_2431355_+	peptidase S14	NA	K7PGT6	Enterobacteria_phage	99.5	0.0e+00
AUM08223.1|2431396_2431765_+	recombinase RecA	NA	A0A291AWX2	Escherichia_phage	100.0	7.4e-52
AUM08224.1|2431757_2432033_+	DNA breaking-rejoining protein	NA	K7PH43	Enterobacteria_phage	98.9	6.6e-45
AUM08225.1|2432044_2432635_+|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	80.1	7.2e-81
AUM10578.1|2432631_2433033_+|tail	phage tail protein	tail	A5LH34	Enterobacteria_phage	99.2	1.9e-72
AUM08226.1|2433043_2433787_+|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	98.0	1.6e-130
AUM10577.1|2433847_2434234_+|tail	phage minor tail protein G	tail	K7PLV8	Enterobacteria_phage	100.0	3.3e-66
AUM08227.1|2434242_2434572_+|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	100.0	7.6e-56
AUM08228.1|2434543_2437600_+|tail	phage tail tape measure protein	tail	A5LH38	Enterobacteria_phage	98.1	0.0e+00
AUM08229.1|2437599_2437929_+|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	100.0	1.7e-60
AUM08230.1|2437938_2438637_+|tail	phage minor tail protein L	tail	A5LH40	Enterobacteria_phage	99.1	3.0e-134
AUM08231.1|2438641_2439385_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	98.0	2.7e-149
AUM08232.1|2439282_2439930_+|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	98.1	2.7e-113
AUM08233.1|2439990_2443386_+	host specificity protein J	NA	K7PKJ2	Enterobacteria_phage	89.2	0.0e+00
AUM08234.1|2443444_2445817_+|tail	phage tail protein	tail	A0A1X7QGG5	Escherichia_phage	69.0	1.1e-167
AUM08235.1|2445816_2446098_+	hypothetical protein	NA	A0A1X7QHA1	Escherichia_phage	50.0	1.8e-18
AUM08236.1|2446107_2447148_+	peptidase S74	NA	A0A0E3M4A9	Enterobacteria_phage	67.6	4.9e-125
AUM10579.1|2447190_2447484_+	hypothetical protein	NA	NA	NA	NA	NA
AUM08237.1|2447524_2447614_+|tail	phage tail protein	tail	K7PMH7	Enterobacteria_phage	82.8	1.1e-06
AUM08238.1|2447711_2448302_-	DNA invertase	NA	A0A219Y9V9	Aeromonas_phage	35.9	2.8e-24
AUM08239.1|2448620_2448854_-	hypothetical protein	NA	A0A192Y6D5	Salmonella_phage	87.0	3.2e-32
AUM08240.1|2449639_2450923_+	MFS transporter	NA	NA	NA	NA	NA
AUM08241.1|2451011_2452472_+	D-mannonate oxidoreductase	NA	H8ZJP8	Ostreococcus_tauri_virus	29.6	3.9e-43
AUM08242.1|2452507_2452711_-	selenoprotein YdfZ	NA	J9Q802	Salmonella_phage	55.2	1.6e-11
AUM08243.1|2452888_2453575_-	transcriptional regulator	NA	NA	NA	NA	NA
AUM08244.1|2453663_2454410_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AUM08245.1|2454421_2454640_-	hypothetical protein	NA	NA	NA	NA	NA
AUM10580.1|2454546_2456592_+	dipeptidyl carboxypeptidase II	NA	NA	NA	NA	NA
AUM08246.1|2456683_2456845_+	hypothetical protein	NA	NA	NA	NA	NA
AUM08247.1|2457098_2457989_+	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	39.0	9.6e-21
AUM08248.1|2458208_2458304_-	hypothetical protein	NA	NA	NA	NA	NA
AUM08249.1|2458430_2459618_-	transporter	NA	NA	NA	NA	NA
AUM08250.1|2459812_2460712_+	O-acetylserine/cysteine exporter	NA	NA	NA	NA	NA
AUM10581.1|2460756_2461455_-	transcriptional regulator	NA	NA	NA	NA	NA
AUM08251.1|2461652_2461964_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
AUM08252.1|2462078_2463401_+	PTS cellobiose transporter subunit IIC	NA	NA	NA	NA	NA
AUM08253.1|2463428_2463740_+	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA	NA
AUM08254.1|2463794_2465468_+	carbohydrate porin	NA	NA	NA	NA	NA
AUM08255.1|2466987_2467206_-	multiple antibiotic resistance regulatory periplasmic protein MarB	NA	NA	NA	NA	NA
AUM08256.1|2467237_2467621_-	MDR efflux pump AcrAB transcriptional activator MarA	NA	D0R0F8	Streptococcus_phage	32.3	4.7e-09
AUM08257.1|2467641_2468076_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUM08258.1|2468287_2468953_+	stress protection protein MarC	NA	NA	NA	NA	NA
AUM08259.1|2469235_2470240_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP022279	Escherichia coli strain STEC299 chromosome, complete genome	4907118	2680302	2745609	4907118	transposase,tail,protease,head,portal,terminase,capsid,lysis,integrase,holin	Escherichia_phage(32.65%)	76	2685020:2685035	2752974:2752989
AUM08437.1|2680302_2681352_-|protease	protease SohB	protease	A0A2H4UUF9	Bodo_saltans_virus	31.5	1.3e-21
AUM08438.1|2681571_2682330_+	NAD(P)-dependent oxidoreductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	23.4	9.7e-06
AUM08439.1|2682326_2682917_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
AUM08440.1|2682956_2683832_-	23S rRNA pseudouridylate synthase B	NA	NA	NA	NA	NA
AUM10591.1|2684044_2685934_-	DUF2207 domain-containing protein	NA	NA	NA	NA	NA
2685020:2685035	attL	AAAACCTTTATCGTCG	NA	NA	NA	NA
AUM08441.1|2685961_2686582_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
AUM08442.1|2686578_2687460_-	phosphatase	NA	NA	NA	NA	NA
AUM10592.1|2687597_2687642_+	trp operon leader peptide	NA	NA	NA	NA	NA
AUM08443.1|2687733_2689296_+	anthranilate synthase component I	NA	NA	NA	NA	NA
AUM08444.1|2689295_2690891_+	bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	38.5	2.9e-52
AUM10593.1|2690894_2692253_+	bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase	NA	A0A0P0IR83	Acinetobacter_phage	40.7	8.6e-37
AUM08445.1|2692264_2693458_+	tryptophan synthase subunit beta	NA	NA	NA	NA	NA
AUM08446.1|2693457_2694264_+	tryptophan synthase subunit alpha	NA	NA	NA	NA	NA
AUM10594.1|2694608_2695091_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
AUM08447.1|2695136_2695643_+	YciE/YciF family protein	NA	NA	NA	NA	NA
AUM08448.1|2695701_2695809_-	hypothetical protein	NA	NA	NA	NA	NA
AUM08449.1|2696193_2696865_-|tail	phage tail protein	tail	S5MBX6	Escherichia_phage	81.4	2.0e-103
AUM08450.1|2696872_2697085_-	hypothetical protein	NA	A0A0P0ZFL3	Escherichia_phage	55.2	1.1e-12
AUM10595.1|2697374_2697908_-	hypothetical protein	NA	Q9LA61	Enterobacterial_phage	46.6	8.3e-36
AUM08451.1|2697990_2699094_-|tail	phage tail protein	tail	Q9LA62	Enterobacterial_phage	69.9	1.0e-32
AUM08452.1|2699157_2699757_-	Ail/Lom family protein	NA	Q9EV15	Enterobacteria_phage	88.9	4.7e-96
AUM08453.1|2699824_2703211_-|tail	phage tail protein	tail	A0A0P0ZCI5	Stx2-converting_phage	86.1	0.0e+00
AUM08454.1|2703344_2703872_+	superoxide dismutase	NA	Q9MC02	Salmonella_phage	60.5	1.8e-59
AUM08455.1|2704140_2704821_-|tail	phage tail protein	tail	A0A0N7KZG2	Stx2-converting_phage	98.7	3.0e-107
AUM08456.1|2704718_2705462_-|tail	phage tail protein	tail	Q6H9T4	Enterobacteria_phage	94.3	9.8e-144
AUM08457.1|2705467_2706166_-|tail	phage minor tail protein L	tail	H6WZM3	Escherichia_phage	97.8	2.6e-130
AUM08458.1|2706175_2706505_-|tail	phage tail protein	tail	Q687F2	Enterobacteria_phage	92.7	2.4e-54
AUM08459.1|2706501_2709096_-|tail	phage tail tape measure protein	tail	A0A2R9YJM8	Escherichia_phage	70.1	0.0e+00
AUM08460.1|2709076_2709490_-|tail	phage tail assembly protein T	tail	S5MDP5	Escherichia_phage	82.2	2.1e-42
AUM08461.1|2709516_2709948_-|tail	phage minor tail protein G	tail	A0A0K2FIQ8	Enterobacteria_phage	66.7	5.8e-40
AUM08462.1|2709967_2710717_-|tail	phage tail protein	tail	S5M7Q5	Escherichia_phage	94.8	5.6e-131
AUM08463.1|2710724_2711120_-|tail	phage tail protein	tail	A0A2R9YJI2	Escherichia_phage	83.2	8.8e-59
AUM08464.1|2711116_2711650_-|tail	phage tail protein	tail	A0A2R9YJK4	Escherichia_phage	65.1	1.3e-57
AUM08465.1|2711665_2712019_-|tail	phage tail protein	tail	A0A0K2FJB7	Enterobacteria_phage	70.1	1.9e-41
AUM08466.1|2712011_2712380_-	hypothetical protein	NA	NA	NA	NA	NA
AUM08467.1|2712432_2713461_-|capsid	major capsid protein E	capsid	C6ZCY2	Enterobacteria_phage	61.3	5.0e-114
AUM08468.1|2713518_2713866_-|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	58.1	2.0e-22
AUM08469.1|2713902_2715408_-	scaffolding protein	NA	A0A2I6TC87	Escherichia_phage	53.0	1.3e-99
AUM08470.1|2715397_2716990_-|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	60.5	1.0e-182
AUM08471.1|2716986_2717193_-|tail	phage tail protein	tail	K7PM10	Enterobacteria_phage	58.5	1.6e-11
AUM08472.1|2717176_2719105_-|terminase	terminase	terminase	A0A0K2FJ14	Enterobacteria_phage	66.0	1.8e-261
AUM08473.1|2719076_2719586_-|terminase	terminase	terminase	A0A1I9KFT4	Aeromonas_phage	32.2	2.7e-12
AUM08474.1|2720289_2720823_+	hypothetical protein	NA	NA	NA	NA	NA
AUM08475.1|2720916_2721384_-|lysis	lysis protein	lysis	Q6H9V3	Enterobacteria_phage	82.5	1.6e-62
AUM08476.1|2721682_2722216_-	lysozyme	NA	A0A1U9AJ98	Stx1_converting_phage	94.9	1.4e-99
AUM08477.1|2722220_2722436_-|holin	holin	holin	G9L6J5	Escherichia_phage	97.2	1.7e-32
AUM08478.1|2722513_2722906_-	hypothetical protein	NA	NA	NA	NA	NA
AUM08479.1|2722811_2722997_-	DUF1378 domain-containing protein	NA	S5MBZ5	Escherichia_phage	58.3	4.2e-11
AUM08480.1|2723151_2724342_-	hypothetical protein	NA	B6DZ89	Enterobacteria_phage	41.2	2.2e-73
AUM08481.1|2725471_2725789_+	anti-adapter protein IraM	NA	Q8HAJ1	Enterobacteria_phage	64.5	1.7e-36
AUM10596.1|2725876_2726062_+	hypothetical protein	NA	NA	NA	NA	NA
AUM08482.1|2728319_2728517_-	TrmB family transcriptional regulator	NA	S5MQK8	Escherichia_phage	98.5	4.0e-28
AUM08483.1|2728691_2729405_-	hypothetical protein	NA	NA	NA	NA	NA
AUM08484.1|2729658_2730324_-	antiterminator	NA	I6PDF8	Cronobacter_phage	52.0	3.9e-59
AUM08485.1|2730320_2730686_-	hypothetical protein	NA	V5URS4	Shigella_phage	66.7	5.5e-39
AUM08486.1|2730686_2731745_-	hypothetical protein	NA	U5P0K4	Shigella_phage	47.1	2.2e-88
AUM08487.1|2731746_2732025_-	hypothetical protein	NA	I6PCV7	Cronobacter_phage	48.4	9.7e-12
AUM08488.1|2732192_2732348_-	protein HokD	NA	A0A0U2QV81	Escherichia_phage	96.1	1.5e-17
AUM10597.1|2732592_2732934_-	hypothetical protein	NA	NA	NA	NA	NA
AUM08489.1|2732981_2733677_-	hypothetical protein	NA	NA	NA	NA	NA
AUM08490.1|2733720_2734323_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AUM08491.1|2734855_2735044_-	hypothetical protein	NA	NA	NA	NA	NA
AUM08492.1|2735056_2735839_-|transposase	transposase	transposase	A0A2L1IVB6	Escherichia_phage	99.6	5.9e-139
AUM08493.1|2735835_2736858_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	99.4	6.0e-200
AUM08494.1|2737325_2738396_-	phage replisome organizer	NA	A0A088CD36	Shigella_phage	64.6	9.4e-63
AUM08495.1|2738467_2738893_-	Rha family transcriptional regulator	NA	NA	NA	NA	NA
AUM08496.1|2738876_2739119_-	hypothetical protein	NA	H9C161	Pectobacterium_phage	55.8	4.8e-07
AUM10598.1|2739324_2739849_+	LexA family transcriptional repressor	NA	H9C160	Pectobacterium_phage	28.0	2.2e-12
AUM10599.1|2740141_2740297_+	DUF1391 domain-containing protein	NA	M4QQ57	Salicola_phage	51.1	6.8e-07
AUM08497.1|2740298_2740427_+	hypothetical protein	NA	NA	NA	NA	NA
AUM08498.1|2740456_2740675_+	hypothetical protein	NA	NA	NA	NA	NA
AUM08499.1|2741246_2741435_+	cell division inhibition protein DicB	NA	NA	NA	NA	NA
AUM08500.1|2741431_2741623_+	DUF1482 domain-containing protein	NA	NA	NA	NA	NA
AUM08501.1|2741716_2744188_+	exonuclease	NA	A0A192Y6E0	Salmonella_phage	58.2	2.5e-58
AUM08502.1|2744252_2744501_+	excisionase	NA	NA	NA	NA	NA
AUM08503.1|2744478_2745609_+|integrase	integrase	integrase	O21940	Phage_21	52.0	1.8e-104
2752974:2752989	attR	CGACGATAAAGGTTTT	NA	NA	NA	NA
>prophage 8
CP022279	Escherichia coli strain STEC299 chromosome, complete genome	4907118	2832130	2875416	4907118	tail,tRNA,head,terminase,portal,capsid,integrase	uncultured_Caudovirales_phage(60.0%)	59	2828765:2828780	2840305:2840320
2828765:2828780	attL	AATTTTCCTCATCAGC	NA	NA	NA	NA
AUM08578.1|2832130_2833129_+|integrase	integrase	integrase	NA	NA	NA	NA
AUM10606.1|2834112_2835336_+|integrase	integrase	integrase	NA	NA	NA	NA
AUM08579.1|2835376_2835895_-	hypothetical protein	NA	NA	NA	NA	NA
AUM08580.1|2835907_2836762_-	WYL domain-containing protein	NA	NA	NA	NA	NA
AUM08581.1|2836897_2838079_+	metallohydrolase	NA	NA	NA	NA	NA
AUM08582.1|2838075_2840304_+	hypothetical protein	NA	NA	NA	NA	NA
AUM08583.1|2840321_2840477_-	DNA repair protein	NA	I6RSM4	Salmonella_phage	74.5	3.6e-16
2840305:2840320	attR	AATTTTCCTCATCAGC	NA	NA	NA	NA
AUM08584.1|2840476_2840896_-	protein UmuD	NA	A0A1W6JNS2	Morganella_phage	61.3	6.9e-38
AUM08585.1|2841092_2841488_+	hemolysin activation protein	NA	NA	NA	NA	NA
AUM08586.1|2841694_2842156_-	hypothetical protein	NA	NA	NA	NA	NA
AUM08587.1|2842232_2842892_-	isomerase/hydrolase	NA	NA	NA	NA	NA
AUM08588.1|2842963_2843257_-	hypothetical protein	NA	NA	NA	NA	NA
AUM08589.1|2843498_2843900_+	inhibitor of g-type lysozyme	NA	NA	NA	NA	NA
AUM08590.1|2844019_2844388_-	hypothetical protein	NA	NA	NA	NA	NA
AUM08591.1|2844540_2844768_-	hypothetical protein	NA	NA	NA	NA	NA
AUM08592.1|2844907_2845603_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AUM08593.1|2845626_2846439_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AUM08594.1|2846442_2846709_+	cell division topological specificity factor	NA	NA	NA	NA	NA
AUM08595.1|2846850_2847036_-	hypothetical protein	NA	NA	NA	NA	NA
AUM08596.1|2847539_2847725_-	hypothetical protein	NA	NA	NA	NA	NA
AUM08597.1|2847825_2847999_+	hypothetical protein	NA	NA	NA	NA	NA
AUM08598.1|2848000_2848345_+	glycine zipper family protein	NA	NA	NA	NA	NA
AUM08599.1|2848354_2848684_+	hypothetical protein	NA	NA	NA	NA	NA
AUM08600.1|2848742_2849399_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	A0A2L1IV18	Escherichia_phage	29.8	2.7e-36
AUM08601.1|2849415_2849778_-	porin	NA	NA	NA	NA	NA
AUM08602.1|2850081_2850261_-	ATPase	NA	NA	NA	NA	NA
AUM08603.1|2850658_2850877_-	hypothetical protein	NA	NA	NA	NA	NA
AUM08604.1|2852199_2852448_-	hypothetical protein	NA	NA	NA	NA	NA
AUM08605.1|2852560_2852827_-	regulatory protein AriR	NA	NA	NA	NA	NA
AUM08606.1|2852855_2853128_-	two-component-system connector protein YmgA	NA	NA	NA	NA	NA
AUM08607.1|2853170_2853407_-	two-component-system connector protein YcgZ	NA	NA	NA	NA	NA
AUM08608.1|2853719_2854931_+	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AUM08609.1|2855135_2855867_+	helix-turn-helix-type transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	51.0	9.3e-54
AUM08610.1|2856087_2856492_+	hypothetical protein	NA	NA	NA	NA	NA
AUM08611.1|2856753_2858004_-	isocitrate dehydrogenase (NADP(+))	NA	Q77Z09	Phage_21	100.0	3.8e-23
AUM08612.1|2858175_2858829_+	23S rRNA pseudouridine synthase E	NA	NA	NA	NA	NA
AUM08613.1|2858838_2859300_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AUM08614.1|2859353_2860460_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
AUM10607.1|2860495_2861137_+	lysogenization protein HflD	NA	NA	NA	NA	NA
AUM08615.1|2861140_2862511_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	44.9	1.6e-107
AUM08616.1|2862679_2863351_+	two-component system response regulator PhoP	NA	NA	NA	NA	NA
AUM08617.1|2863350_2864811_+	sensor protein PhoQ	NA	NA	NA	NA	NA
AUM08618.1|2865154_2865337_-	hypothetical protein	NA	NA	NA	NA	NA
AUM08619.1|2865593_2865875_-	hypothetical protein	NA	NA	NA	NA	NA
AUM08620.1|2865888_2867550_-|terminase	terminase	terminase	A0A2H4JB64	uncultured_Caudovirales_phage	81.4	2.0e-277
AUM10608.1|2867533_2867890_-|terminase	terminase	terminase	A0A2H4JHS3	uncultured_Caudovirales_phage	81.4	9.4e-52
AUM10609.1|2868014_2868188_-	hypothetical protein	NA	NA	NA	NA	NA
AUM08621.1|2868180_2868621_-	HNH endonuclease	NA	A0A2H4JAS8	uncultured_Caudovirales_phage	67.8	7.8e-56
AUM08622.1|2868620_2868917_-	hypothetical protein	NA	A0A2H4JD08	uncultured_Caudovirales_phage	65.3	4.0e-32
AUM08623.1|2868913_2869252_-|head,tail	head-tail adaptor protein	head,tail	A0A2H4JHK5	uncultured_Caudovirales_phage	52.7	3.0e-31
AUM08624.1|2869248_2870460_-|portal	phage portal protein	portal	A0A2H4JFJ9	uncultured_Caudovirales_phage	79.2	5.6e-189
AUM10610.1|2870461_2871019_-	peptidase	NA	A0A2H4JB68	uncultured_Caudovirales_phage	63.0	2.0e-61
AUM08625.1|2871074_2872232_-|capsid	phage major capsid protein	capsid	A0A2H4JED2	uncultured_Caudovirales_phage	64.9	2.1e-137
AUM08626.1|2872524_2872827_-	hypothetical protein	NA	NA	NA	NA	NA
AUM08627.1|2872789_2872918_-	trigger factor	NA	NA	NA	NA	NA
AUM08628.1|2872874_2873147_-	PerC family transcriptional regulator	NA	NA	NA	NA	NA
AUM08629.1|2873157_2873568_-	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
AUM10611.1|2873564_2873816_-	hypothetical protein	NA	NA	NA	NA	NA
AUM08630.1|2874018_2875416_-	DNA primase	NA	A0A2H4JFA4	uncultured_Caudovirales_phage	59.2	4.4e-113
>prophage 9
CP022279	Escherichia coli strain STEC299 chromosome, complete genome	4907118	3003444	3049933	4907118	transposase,plate,tail,head,terminase,lysis,integrase,holin	Edwardsiella_phage(24.24%)	73	2995489:2995505	3056577:3056593
2995489:2995505	attL	TTGCCTGATGCGACGCT	NA	NA	NA	NA
AUM08762.1|3003444_3004023_-|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	89.0	1.3e-95
AUM08763.1|3005068_3005707_-	hypothetical protein	NA	A0A077K9U8	Edwardsiella_phage	72.9	2.9e-88
AUM08764.1|3005717_3006947_-	hypothetical protein	NA	A0A077KGW9	Edwardsiella_phage	68.9	1.0e-158
AUM08765.1|3006943_3007303_-	hypothetical protein	NA	A0A077KCA1	Edwardsiella_phage	71.1	4.9e-40
AUM08766.1|3007299_3007992_-|plate	phage baseplate protein	plate	A0A077KAY0	Edwardsiella_phage	46.9	3.2e-56
AUM08767.1|3007984_3008938_-	hypothetical protein	NA	A0A077KC17	Edwardsiella_phage	44.2	9.2e-62
AUM08768.1|3008858_3009161_-	hypothetical protein	NA	A0A077K9U4	Edwardsiella_phage	67.0	5.2e-35
AUM08769.1|3009157_3009973_-	hypothetical protein	NA	A0A077KGW3	Edwardsiella_phage	66.4	2.1e-94
AUM08770.1|3010023_3010245_-	hypothetical protein	NA	NA	NA	NA	NA
AUM08771.1|3010244_3010973_-	hypothetical protein	NA	A0A0P0ZDC0	Stx2-converting_phage	66.4	2.0e-80
AUM10621.1|3011061_3011718_-	hypothetical protein	NA	H6WRU8	Salmonella_phage	75.6	2.0e-87
AUM08772.1|3012034_3012676_+	peptidase S24	NA	NA	NA	NA	NA
AUM08773.1|3012784_3014599_-	transglycosylase	NA	A0A077KC92	Edwardsiella_phage	30.4	1.5e-49
AUM08774.1|3014595_3014799_-	hypothetical protein	NA	A0A077KAX1	Edwardsiella_phage	64.6	5.0e-10
AUM08775.1|3014810_3015218_-	hypothetical protein	NA	A0A077KC08	Edwardsiella_phage	68.7	3.1e-43
AUM08776.1|3015217_3015652_-	hypothetical protein	NA	A0A077K9T0	Edwardsiella_phage	69.4	2.2e-55
AUM08777.1|3015663_3017154_-	hypothetical protein	NA	A0A077KGV4	Edwardsiella_phage	73.1	2.6e-204
AUM10622.1|3017150_3017465_-	hypothetical protein	NA	A0A077KC88	Edwardsiella_phage	71.0	7.0e-35
AUM08778.1|3017662_3018034_-	hypothetical protein	NA	A0A077KAW7	Edwardsiella_phage	82.1	1.7e-56
AUM08779.1|3018008_3018575_-	hypothetical protein	NA	A0A077KC03	Edwardsiella_phage	45.7	1.7e-31
AUM08780.1|3018574_3019006_-	hypothetical protein	NA	Q2NPC6	Xanthomonas_phage	46.4	7.2e-22
AUM10623.1|3018993_3019200_-	hypothetical protein	NA	NA	NA	NA	NA
AUM08781.1|3019368_3020409_-	DUF2184 domain-containing protein	NA	A0A219YBB0	Aeromonas_phage	54.9	1.9e-97
AUM08782.1|3020412_3020892_-	hypothetical protein	NA	A0A219YBF2	Aeromonas_phage	54.2	1.5e-36
AUM08783.1|3020895_3022122_-	hypothetical protein	NA	A0A219YBB9	Aeromonas_phage	38.7	4.5e-61
AUM10624.1|3022256_3022895_-|head	phage head morphogenesis protein	head	A0A077KGU5	Edwardsiella_phage	53.9	2.3e-56
AUM08784.1|3023404_3023494_+	glutathione S-transferase	NA	NA	NA	NA	NA
AUM08785.1|3023507_3024530_+|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	99.7	5.4e-201
AUM08786.1|3024526_3025309_+|transposase	transposase	transposase	A0A2L1IVB6	Escherichia_phage	99.6	5.9e-139
AUM08787.1|3026490_3028011_-|terminase	terminase	terminase	Q7Y5U7	Haemophilus_phage	49.4	3.7e-129
AUM08788.1|3027964_3028555_-|terminase	terminase small subunit	terminase	G0ZND3	Cronobacter_phage	67.2	1.1e-62
AUM08789.1|3029083_3029344_-	transcriptional regulator	NA	NA	NA	NA	NA
AUM08790.1|3029340_3029685_-	hypothetical protein	NA	A0A142IEV8	Pseudomonas_phage	50.0	5.4e-12
AUM08791.1|3029886_3030324_-|lysis	lysis protein	lysis	I6RSJ6	Salmonella_phage	97.2	8.5e-71
AUM08792.1|3030320_3030818_-	lysozyme	NA	M1FJA0	Enterobacteria_phage	98.8	3.8e-91
AUM08793.1|3030817_3031033_-|holin	holin	holin	M1FN85	Enterobacteria_phage	100.0	2.4e-34
AUM08794.1|3031057_3031564_+	hypothetical protein	NA	R9TR16	Aeromonas_phage	93.5	1.7e-09
AUM08795.1|3031549_3032164_-	hypothetical protein	NA	A0A2H4FND2	Salmonella_phage	88.2	4.5e-102
AUM08796.1|3032163_3032307_-	hypothetical protein	NA	A0A1B5FPC2	Escherichia_phage	78.7	3.0e-17
AUM08797.1|3032303_3032666_-	hypothetical protein	NA	K7PKF0	Enterobacteria_phage	99.2	2.0e-62
AUM08798.1|3032662_3032938_-	hypothetical protein	NA	F1C5C8	Cronobacter_phage	75.8	1.9e-36
AUM08799.1|3032930_3033440_-	HNH endonuclease	NA	U5PWK7	Bacillus_phage	40.4	2.4e-24
AUM08800.1|3033432_3033603_-	protein ninF	NA	K7PLU6	Enterobacteria_phage	100.0	2.5e-26
AUM08801.1|3033599_3033776_-	NinE family protein	NA	I6RSI9	Salmonella_phage	74.1	6.3e-17
AUM08802.1|3033742_3033916_-	protein ninD	NA	I6S1V2	Salmonella_phage	100.0	3.2e-29
AUM08803.1|3033912_3034371_-	hypothetical protein	NA	K7PGZ3	Enterobacteria_phage	100.0	1.6e-80
AUM08804.1|3034429_3035881_-	helicase DnaB	NA	Q7Y2K5	Escherichia_phage	99.4	7.2e-276
AUM08805.1|3035855_3036755_-	DNA replication protein	NA	A0A0N7C1Z7	Escherichia_phage	98.7	3.3e-162
AUM08806.1|3036747_3036894_-	hypothetical protein	NA	Q687G5	Enterobacteria_phage	100.0	1.1e-19
AUM08807.1|3036926_3037226_-	hypothetical protein	NA	A0A0P0ZBJ0	Stx2-converting_phage	99.0	4.8e-49
AUM08808.1|3037332_3037557_-	transcriptional regulator	NA	A0A0N7C1T6	Escherichia_phage	86.3	1.4e-29
AUM08809.1|3037701_3038376_+	transcriptional regulator	NA	A0A0N7C1P9	Escherichia_phage	84.4	3.1e-104
AUM08810.1|3038413_3038755_+	hypothetical protein	NA	G9L675	Escherichia_phage	97.3	1.6e-61
AUM08811.1|3038821_3039313_+	hypothetical protein	NA	A0A2H4J8G2	uncultured_Caudovirales_phage	45.7	1.2e-28
AUM08812.1|3039302_3040079_+	hypothetical protein	NA	A0A2H4JC42	uncultured_Caudovirales_phage	43.9	3.7e-61
AUM08813.1|3040541_3040910_+	hypothetical protein	NA	F1C5C1	Cronobacter_phage	67.8	4.4e-36
AUM08814.1|3041015_3041798_-|transposase	transposase	transposase	A0A2L1IVB6	Escherichia_phage	99.6	5.9e-139
AUM08815.1|3041794_3042817_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	99.7	5.4e-201
AUM08816.1|3042830_3042953_-	chemotaxis protein	NA	NA	NA	NA	NA
AUM08817.1|3042913_3043327_+	hypothetical protein	NA	I6RSN8	Salmonella_phage	86.9	1.9e-64
AUM08818.1|3043982_3044291_+	hypothetical protein	NA	K7PJM4	Enterobacteria_phage	97.1	4.8e-52
AUM08819.1|3044287_3045190_+	DNA recombinase	NA	K7PKG9	Enterobacteria_phage	88.1	8.8e-147
AUM08820.1|3045173_3045656_+	hypothetical protein	NA	K7P6T5	Enterobacteria_phage	99.4	8.4e-80
AUM08821.1|3045667_3045982_+	hypothetical protein	NA	K7PLT4	Enterobacteria_phage	99.0	3.5e-50
AUM08822.1|3045998_3046166_+	DUF2737 domain-containing protein	NA	Q716F2	Shigella_phage	98.2	3.0e-24
AUM08823.1|3046162_3046417_+	hypothetical protein	NA	A0A1V0E5L1	Salmonella_phage	98.8	7.7e-40
AUM08824.1|3046403_3047048_+	hypothetical protein	NA	A0A0F6R7P8	Escherichia_coli_O157_typing_phage	66.8	1.1e-71
AUM08825.1|3047049_3047313_+	hypothetical protein	NA	A0A2P0P958	Salmonella_phage	71.3	3.3e-30
AUM08826.1|3047323_3047980_+	hypothetical protein	NA	A5LH60	Enterobacteria_phage	71.4	1.4e-69
AUM08827.1|3047924_3048257_+	RNA-binding protein	NA	Q9XJG9	Enterobacteria_phage	94.1	1.6e-50
AUM08828.1|3048328_3048535_+	hypothetical protein	NA	NA	NA	NA	NA
AUM10625.1|3048663_3048882_+	excisionase	NA	Q77WA4	Escherichia_phage	100.0	3.7e-35
AUM08829.1|3048859_3049933_+|integrase	integrase	integrase	Q9G075	Enterobacteria_phage	99.2	4.1e-199
3056577:3056593	attR	TTGCCTGATGCGACGCT	NA	NA	NA	NA
>prophage 10
CP022279	Escherichia coli strain STEC299 chromosome, complete genome	4907118	3101008	3176549	4907118	transposase,protease,tRNA	Bacillus_phage(19.05%)	57	NA	NA
AUM08876.1|3101008_3102409_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2K9V902	Bandra_megavirus	36.1	5.3e-82
AUM08877.1|3104115_3104298_-	hypothetical protein	NA	NA	NA	NA	NA
AUM08878.1|3104284_3105475_+	aspartate aminotransferase	NA	NA	NA	NA	NA
AUM08879.1|3105524_3106172_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AUM10631.1|3106198_3106747_-	hypothetical protein	NA	A0A0K1LKR7	Rhodobacter_phage	33.7	7.0e-06
AUM08880.1|3106927_3108775_-	L,D-transpeptidase	NA	NA	NA	NA	NA
AUM08881.1|3109035_3113496_-	chromosome partition protein MukB	NA	NA	NA	NA	NA
AUM08882.1|3113495_3114200_-	condensin subunit E	NA	NA	NA	NA	NA
AUM08883.1|3114180_3115503_-	chromosome partition protein MukF	NA	NA	NA	NA	NA
AUM08884.1|3115499_3116285_-|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	tRNA	NA	NA	NA	NA
AUM08885.1|3116353_3116518_+	hypothetical protein	NA	NA	NA	NA	NA
AUM08886.1|3116420_3117200_+	envelope biogenesis factor ElyC	NA	NA	NA	NA	NA
AUM08887.1|3117176_3118070_-	hypothetical protein	NA	NA	NA	NA	NA
AUM08888.1|3118223_3118970_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AUM08889.1|3118966_3119149_-	hypothetical protein	NA	NA	NA	NA	NA
AUM08890.1|3119200_3120433_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AUM08891.1|3120469_3121456_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AUM08892.1|3121452_3123201_-	lipid A export ATP-binding/permease MsbA	NA	W8CYL7	Bacillus_phage	29.8	3.3e-57
AUM08893.1|3123237_3125502_-	ComEC family protein	NA	NA	NA	NA	NA
AUM08894.1|3125707_3125992_-	integration host factor subunit beta	NA	A7KV42	Bacillus_phage	40.2	3.2e-10
AUM08895.1|3126151_3127825_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
AUM08896.1|3127935_3128619_-	cytidylate kinase	NA	NA	NA	NA	NA
AUM08897.1|3128791_3129556_-|protease	metalloprotease	protease	NA	NA	NA	NA
AUM08898.1|3129724_3131008_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AUM08899.1|3131078_3132167_-	3-phosphoserine/phosphohydroxythreonine aminotransferase	NA	M1Q1P2	Streptococcus_phage	46.8	2.7e-81
AUM08900.1|3132365_3133058_-	DUF421 domain-containing protein	NA	NA	NA	NA	NA
AUM08901.1|3133187_3134948_+	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA	NA
AUM08902.1|3135353_3136211_+	formate transporter FocA	NA	NA	NA	NA	NA
AUM08903.1|3136265_3138548_+	formate acetyltransferase 1	NA	A0A2P0VNR5	Tetraselmis_virus	41.5	1.0e-162
AUM08904.1|3138739_3139480_+	pyruvate formate lyase-activating protein	NA	A0A2P0VNQ0	Tetraselmis_virus	26.5	8.0e-21
AUM08905.1|3139576_3140725_-	MFS transporter	NA	NA	NA	NA	NA
AUM08906.1|3141038_3141665_+	hydrolase	NA	NA	NA	NA	NA
AUM08907.1|3141700_3142564_-	dimethyl sulfoxide reductase	NA	NA	NA	NA	NA
AUM08908.1|3142565_3143183_-	dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	60.6	5.0e-77
AUM08909.1|3143193_3145638_-	dimethylsulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	49.9	6.0e-222
AUM08910.1|3145876_3147169_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.2	1.5e-94
AUM08911.1|3147259_3148603_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	40.8	2.1e-80
AUM08912.1|3148613_3149225_-	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AUM08913.1|3149383_3153451_-	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	48.7	1.2e-86
AUM08914.1|3153585_3154080_-	leucine-responsive regulatory protein	NA	NA	NA	NA	NA
AUM08915.1|3154623_3155589_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	44.6	1.1e-62
AUM08916.1|3155711_3157478_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	24.3	4.1e-23
AUM08917.1|3157478_3159200_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	NA	W8CYL7	Bacillus_phage	25.2	2.4e-20
AUM08918.1|3159241_3159946_+|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
AUM08919.1|3160230_3160449_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
AUM08920.1|3161612_3162167_-	type I-F CRISPR-associated endoribonuclease Cas6/Csy4	NA	NA	NA	NA	NA
AUM08921.1|3162177_3163179_-	CRISPR-associated protein Csy3	NA	A0A2D0YRR8	Vibrio_phage	39.6	6.1e-48
AUM08922.1|3163189_3164113_-	type I-F CRISPR-associated protein Csy2	NA	NA	NA	NA	NA
AUM08923.1|3164109_3165417_-	type I-F CRISPR-associated protein Csy1	NA	NA	NA	NA	NA
AUM08924.1|3167696_3168479_-|transposase	transposase	transposase	A0A2L1IVB6	Escherichia_phage	99.6	5.9e-139
AUM08925.1|3168475_3169498_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	99.7	5.4e-201
AUM08926.1|3169511_3170012_-	hypothetical protein	NA	NA	NA	NA	NA
AUM08927.1|3170040_3171012_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUM08928.1|3171161_3172109_-	hypothetical protein	NA	NA	NA	NA	NA
AUM08929.1|3172105_3173089_-	subtype I-F CRISPR-associated endonuclease Cas1	NA	A0A2D0YFC9	Vibrio_phage	35.2	3.4e-43
AUM08930.1|3173921_3176198_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.5	1.9e-166
AUM08931.1|3176228_3176549_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	44.4	1.6e-13
>prophage 11
CP022279	Escherichia coli strain STEC299 chromosome, complete genome	4907118	4058502	4144216	4907118	transposase,tail,tRNA,head,portal,terminase,capsid,lysis,integrase,holin	Enterobacteria_phage(33.33%)	99	4103855:4103870	4145898:4145913
AUM09722.1|4058502_4059189_-|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
AUM09723.1|4059588_4059729_-	hypothetical protein	NA	NA	NA	NA	NA
AUM09724.1|4059824_4060541_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AUM09725.1|4060600_4061953_-	inner membrane protein	NA	NA	NA	NA	NA
AUM09726.1|4062010_4063435_-	two-component sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	20.9	2.5e-10
AUM09727.1|4063434_4064124_-	two-component system response regulator CreB	NA	W8CYM9	Bacillus_phage	35.3	6.7e-30
AUM09728.1|4064136_4064610_-	protein CreA	NA	NA	NA	NA	NA
AUM09729.1|4064820_4065690_+	right oriC-binding transcriptional activator	NA	NA	NA	NA	NA
AUM09730.1|4065686_4066334_-	phosphoglycerate mutase GpmB	NA	NA	NA	NA	NA
AUM10665.1|4066385_4066913_+	non-canonical purine NTP phosphatase	NA	NA	NA	NA	NA
AUM09731.1|4066985_4067312_-	Trp operon repressor	NA	NA	NA	NA	NA
AUM09732.1|4067401_4069339_-	murein transglycosylase	NA	A0A1P8CWQ1	Bacillus_phage	34.8	4.0e-11
AUM09733.1|4069545_4071213_+	energy-dependent translational throttle protein EttA	NA	A0A2K9L3Z8	Tupanvirus	27.7	1.0e-39
AUM09734.1|4071268_4071553_-	transcriptional regulator	NA	NA	NA	NA	NA
AUM09735.1|4071554_4071887_-	addiction module toxin RelE	NA	NA	NA	NA	NA
AUM09736.1|4071978_4073211_-	trifunctional NAD biosynthesis/regulator protein NadR	NA	A0A0C5K935	Enterococcus_phage	42.6	2.1e-82
AUM09737.1|4073231_4074614_-	DNA repair protein RadA	NA	NA	NA	NA	NA
AUM09738.1|4074662_4075631_-	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
AUM09739.1|4075736_4076381_+	hypothetical protein	NA	NA	NA	NA	NA
AUM09740.1|4076408_4077425_+	lipoate--protein ligase A	NA	NA	NA	NA	NA
AUM09741.1|4077425_4078757_-	transcriptional regulator	NA	NA	NA	NA	NA
AUM09742.1|4078923_4079643_-	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
AUM09743.1|4079699_4080923_-	phosphopentomutase	NA	NA	NA	NA	NA
AUM09744.1|4080974_4082297_-	thymidine phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	39.5	5.2e-79
AUM09745.1|4082374_4083154_-	2-deoxyribose-5-phosphate aldolase	NA	NA	NA	NA	NA
AUM09746.1|4083411_4084962_+	glycine radical enzyme, YjjI family	NA	NA	NA	NA	NA
AUM09747.1|4084933_4085797_+	glycine radical enzyme activase	NA	NA	NA	NA	NA
AUM09748.1|4086013_4086793_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
AUM09749.1|4086789_4087863_-	patatin family protein	NA	NA	NA	NA	NA
AUM09750.1|4087984_4088164_-	DUF1328 domain-containing protein	NA	A0A0N7CBR2	Salmonella_phage	64.2	2.0e-10
AUM09751.1|4088272_4088878_-	molecular chaperone OsmY	NA	NA	NA	NA	NA
AUM09752.1|4089270_4090857_-	peptide chain release factor 3	NA	D0R0F5	Streptococcus_phage	25.2	2.4e-30
AUM09753.1|4090985_4091201_+	damage-inducible protein DinI	NA	S5MQI1	Escherichia_phage	91.4	4.3e-28
AUM09754.1|4091506_4092478_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUM10666.1|4092720_4093254_-	hypothetical protein	NA	A0A2L1IV45	Escherichia_phage	44.7	1.2e-34
AUM09755.1|4093336_4094440_-|tail	phage tail protein	tail	Q9LA62	Enterobacterial_phage	69.9	1.0e-32
AUM09756.1|4094503_4095103_-	Ail/Lom family protein	NA	Q9EV15	Enterobacteria_phage	88.9	4.7e-96
AUM09757.1|4095170_4098557_-|tail	phage tail protein	tail	A0A0P0ZCI5	Stx2-converting_phage	86.3	0.0e+00
AUM09758.1|4098771_4098972_-	hypothetical protein	NA	NA	NA	NA	NA
AUM09759.1|4099040_4099718_-|tail	phage tail protein	tail	A0A0N7KZG2	Stx2-converting_phage	97.8	8.2e-105
AUM09760.1|4099615_4100359_-|tail	phage tail protein	tail	Q6H9T4	Enterobacteria_phage	94.3	9.8e-144
AUM09761.1|4100364_4101063_-|tail	phage minor tail protein L	tail	H6WZM3	Escherichia_phage	97.8	2.6e-130
AUM09762.1|4101072_4101402_-|tail	phage tail protein	tail	Q687F2	Enterobacteria_phage	92.7	2.4e-54
AUM09763.1|4101398_4103972_-|tail	phage tail tape measure protein	tail	A0A2R9YJM8	Escherichia_phage	77.6	0.0e+00
4103855:4103870	attL	TTTTTCTGGCGTCAGT	NA	NA	NA	NA
AUM09764.1|4104019_4104343_-|tail	phage tail assembly protein T	tail	S5MDP5	Escherichia_phage	85.4	1.6e-42
AUM09765.1|4104369_4104801_-|tail	phage minor tail protein G	tail	A0A0K2FIQ8	Enterobacteria_phage	67.1	6.2e-42
AUM09766.1|4104817_4105570_-|tail	phage tail protein	tail	Q687F6	Enterobacteria_phage	96.8	1.9e-131
AUM09767.1|4105577_4105973_-|tail	phage tail protein	tail	A0A2R9YJI2	Escherichia_phage	83.1	2.0e-58
AUM09768.1|4105969_4106503_-|tail	phage tail protein	tail	A0A2R9YJK4	Escherichia_phage	65.6	1.6e-58
AUM09769.1|4106518_4106872_-|tail	phage tail protein	tail	A0A0K2FJB7	Enterobacteria_phage	70.1	1.9e-41
AUM09770.1|4106864_4107233_-	hypothetical protein	NA	NA	NA	NA	NA
AUM09771.1|4107285_4108314_-|capsid	major capsid protein E	capsid	C6ZCY2	Enterobacteria_phage	61.0	8.6e-114
AUM09772.1|4108371_4108719_-|head	head decoration protein	head	C6ZCY1	Enterobacteria_phage	57.0	2.6e-22
AUM09773.1|4108755_4110261_-	scaffolding protein	NA	A0A2I6TC87	Escherichia_phage	53.4	2.3e-99
AUM09774.1|4110250_4111843_-|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	60.7	9.3e-184
AUM09775.1|4111839_4112046_-|tail	phage tail protein	tail	K7PM10	Enterobacteria_phage	58.5	1.6e-11
AUM09776.1|4112029_4113958_-|terminase	terminase	terminase	A0A0K2FJ14	Enterobacteria_phage	66.0	1.8e-261
AUM09777.1|4113929_4114439_-|terminase	terminase	terminase	A0A1I9KFT4	Aeromonas_phage	32.2	2.7e-12
AUM09778.1|4115353_4115887_+	hypothetical protein	NA	NA	NA	NA	NA
AUM10667.1|4115846_4115975_+	hypothetical protein	NA	NA	NA	NA	NA
AUM09779.1|4115981_4116449_-|lysis	lysis protein	lysis	Q7AYI6	Enterobacteria_phage	79.2	5.7e-57
AUM09780.1|4116600_4116816_-	hypothetical protein	NA	NA	NA	NA	NA
AUM09781.1|4116938_4117472_-	lysozyme	NA	A0A1U9AJ98	Stx1_converting_phage	94.9	1.4e-99
AUM09782.1|4118601_4118817_-|holin	holin	holin	G9L6J5	Escherichia_phage	97.2	1.7e-32
AUM09783.1|4118894_4119200_-	hypothetical protein	NA	NA	NA	NA	NA
AUM09784.1|4119222_4119408_-	DUF1378 domain-containing protein	NA	S5MBZ5	Escherichia_phage	58.3	4.2e-11
AUM09785.1|4119541_4120744_-	hypothetical protein	NA	B6DZ89	Enterobacteria_phage	41.4	2.3e-73
AUM09786.1|4121873_4122191_+	anti-adapter protein IraM	NA	Q8HAJ1	Enterobacteria_phage	64.5	1.7e-36
AUM09787.1|4122528_4122792_-	Shiga toxin subunit B	NA	Q6DWK8	Enterobacteria_phage	89.7	1.3e-37
AUM09788.1|4122804_4123764_-	Shiga toxin subunit A	NA	Q6DWN9	Enterobacteria_phage	94.0	1.0e-164
AUM10668.1|4124146_4124320_-	site-specific DNA-methyltransferase	NA	Q8W637	Enterobacteria_phage	93.0	1.1e-21
AUM09789.1|4124386_4125169_-|transposase	transposase	transposase	A0A2L1IVB6	Escherichia_phage	99.6	5.9e-139
AUM09790.1|4125165_4126188_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	99.7	5.4e-201
AUM09791.1|4127753_4128506_-	antitermination protein	NA	Q8SBE4	Shigella_phage	99.2	1.5e-136
AUM09792.1|4128519_4129509_-	hypothetical protein	NA	A0A291AWV9	Escherichia_phage	97.6	3.2e-190
AUM09793.1|4129516_4130332_-	DNA-binding protein	NA	U5P4K5	Shigella_phage	98.2	2.7e-147
AUM09794.1|4130513_4130879_-	hypothetical protein	NA	A0A0P0ZD39	Stx2-converting_phage	100.0	7.6e-65
AUM09795.1|4130875_4131235_-	LexA family transcriptional regulator	NA	U5P451	Shigella_phage	97.2	1.9e-52
AUM09796.1|4131201_4131696_-	hypothetical protein	NA	A0A0P0ZCF0	Stx2-converting_phage	99.4	2.5e-87
AUM09797.1|4131692_4132511_-	helix-turn-helix domain-containing protein	NA	A0A291AWW0	Escherichia_phage	98.9	8.9e-122
AUM09798.1|4132507_4132732_-	hypothetical protein	NA	A5LH70	Enterobacteria_phage	85.1	9.8e-31
AUM09799.1|4132728_4132923_-	hypothetical protein	NA	NA	NA	NA	NA
AUM10669.1|4132919_4134155_-	hypothetical protein	NA	A0A1C9IHV9	Salmonella_phage	68.4	2.7e-98
AUM09800.1|4134126_4134435_+	transcriptional regulator	NA	A0A088CD40	Shigella_phage	96.1	1.7e-46
AUM09801.1|4134456_4134630_-	DUF4222 domain-containing protein	NA	S5M7S5	Escherichia_phage	98.2	4.1e-29
AUM09802.1|4134775_4135327_-	hypothetical protein	NA	A0A0P0ZE62	Stx2-converting_phage	98.9	2.2e-100
AUM09803.1|4135319_4135580_-	transcriptional regulator	NA	K7PJQ8	Enterobacteria_phage	100.0	5.4e-41
AUM09804.1|4135551_4135704_-	amino acid permease	NA	NA	NA	NA	NA
AUM09805.1|4135677_4136370_+	XRE family transcriptional regulator	NA	S5FUZ3	Shigella_phage	96.5	2.9e-121
AUM09806.1|4136449_4136704_+	hypothetical protein	NA	A0A291AWY6	Escherichia_phage	97.4	2.7e-13
AUM09807.1|4136805_4137000_-	hypothetical protein	NA	A0A291AWX8	Escherichia_phage	96.9	8.4e-31
AUM09808.1|4137072_4137435_+	hypothetical protein	NA	Q8SBF8	Shigella_phage	99.2	2.5e-60
AUM09809.1|4137500_4138325_+	hypothetical protein	NA	U5P439	Shigella_phage	98.9	1.1e-148
AUM09810.1|4138452_4138989_+	hypothetical protein	NA	U5P0T3	Shigella_phage	97.8	6.9e-99
AUM09811.1|4139023_4139218_+	DNA-binding protein	NA	A5LH59	Enterobacteria_phage	95.3	2.2e-31
AUM09812.1|4139351_4140236_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUM09813.1|4140406_4141543_+	hypothetical protein	NA	NA	NA	NA	NA
AUM09814.1|4141720_4142914_+	MFS transporter	NA	NA	NA	NA	NA
AUM09815.1|4142992_4144216_-|integrase	integrase	integrase	A5LH57	Enterobacteria_phage	98.8	9.5e-237
4145898:4145913	attR	TTTTTCTGGCGTCAGT	NA	NA	NA	NA
>prophage 1
CP022280	Escherichia coli strain STEC299 plasmid pSTEC299_1, complete sequence	191691	0	55888	191691	integrase,transposase	Escherichia_phage(25.0%)	56	38706:38722	62915:62931
AUM10697.1|456_672_+	hypothetical protein	NA	NA	NA	NA	NA
AUM10698.1|1203_1473_+	hypothetical protein	NA	NA	NA	NA	NA
AUM10699.1|2654_5351_+	hypothetical protein	NA	A0A2L1IV18	Escherichia_phage	36.6	8.8e-126
AUM10841.1|6436_6661_+	hypothetical protein	NA	NA	NA	NA	NA
AUM10700.1|6618_7221_+	proQ/FINO family protein	NA	NA	NA	NA	NA
AUM10842.1|7323_7590_+	hypothetical protein	NA	NA	NA	NA	NA
AUM10701.1|7989_8169_+	hypothetical protein	NA	NA	NA	NA	NA
AUM10702.1|8117_8399_-	hypothetical protein	NA	NA	NA	NA	NA
AUM10703.1|8505_8781_-	RelE/ParE family toxin	NA	NA	NA	NA	NA
AUM10704.1|8780_9065_-	CopG family transcriptional regulator	NA	NA	NA	NA	NA
AUM10705.1|9505_9691_+	hypothetical protein	NA	NA	NA	NA	NA
AUM10843.1|9951_10323_+	hypothetical protein	NA	A0A218MND9	uncultured_virus	37.0	4.0e-05
AUM10706.1|10309_11374_+	hypothetical protein	NA	NA	NA	NA	NA
AUM10707.1|11810_12569_+	accessory colonization factor AcfC	NA	NA	NA	NA	NA
AUM10844.1|12659_13664_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUM10708.1|14040_14229_+	hypothetical protein	NA	NA	NA	NA	NA
AUM10709.1|14190_14439_-	replication protein	NA	NA	NA	NA	NA
AUM10710.1|14568_14751_-	hypothetical protein	NA	NA	NA	NA	NA
AUM10711.1|14800_15670_-	incFII family plasmid replication initiator RepA	NA	NA	NA	NA	NA
AUM10845.1|15650_15725_-	positive regulator of RepFIC repA1 expression	NA	NA	NA	NA	NA
AUM10846.1|15805_15919_+	replication protein RepA	NA	NA	NA	NA	NA
AUM10712.1|15962_16217_-	replication regulatory protein repA2	NA	NA	NA	NA	NA
AUM10713.1|16456_17047_-	hypothetical protein	NA	NA	NA	NA	NA
AUM10714.1|17084_17294_-	transcriptional regulator	NA	NA	NA	NA	NA
AUM10715.1|17339_17801_-	endonuclease	NA	A0A0R6PHV6	Moraxella_phage	36.4	6.1e-19
AUM10716.1|18046_18259_-	hypothetical protein	NA	NA	NA	NA	NA
AUM10717.1|18394_18955_-	conjugal transfer protein	NA	NA	NA	NA	NA
AUM10718.1|19009_19756_-	type-F conjugative transfer system pilin acetylase TraX	NA	A0A077JBM8	Xanthomonas_phage	29.3	1.3e-07
AUM10719.1|19775_23687_-	conjugative transfer relaxase/helicase TraI	NA	NA	NA	NA	NA
AUM10720.1|26657_27281_-	resolvase	NA	A0A0A7NPV4	Enterobacteria_phage	49.7	3.4e-41
AUM10721.1|28827_29574_+	type-F conjugative transfer system pilin acetylase TraX	NA	A0A077JBM8	Xanthomonas_phage	29.3	1.3e-07
AUM10722.1|29628_30189_+	conjugal transfer protein	NA	NA	NA	NA	NA
AUM10723.1|30324_30537_+	hypothetical protein	NA	NA	NA	NA	NA
AUM10724.1|30782_31244_+	endonuclease	NA	A0A0R6PHV6	Moraxella_phage	36.4	6.1e-19
AUM10725.1|31289_31499_+	transcriptional regulator	NA	NA	NA	NA	NA
AUM10726.1|31536_32127_+	hypothetical protein	NA	NA	NA	NA	NA
AUM10727.1|32281_32746_+	hypothetical protein	NA	NA	NA	NA	NA
AUM10728.1|32764_32947_-	hypothetical protein	NA	NA	NA	NA	NA
AUM10729.1|33001_33151_+	Hok/Gef family protein	NA	NA	NA	NA	NA
AUM10730.1|33434_33689_+	replication regulatory protein repA2	NA	NA	NA	NA	NA
AUM10848.1|33753_33843_-	replication protein RepA	NA	NA	NA	NA	NA
AUM10847.1|33925_34000_+	RepA leader peptide Tap	NA	NA	NA	NA	NA
AUM10731.1|33992_35015_+	replication initiation protein	NA	NA	NA	NA	NA
AUM10849.1|35193_35373_+	hypothetical protein	NA	NA	NA	NA	NA
AUM10732.1|35940_36225_+	hypothetical protein	NA	NA	NA	NA	NA
AUM10733.1|36212_36698_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUM10734.1|37314_37620_-	hypothetical protein	NA	NA	NA	NA	NA
AUM10735.1|37662_39435_+	peptide transporter	NA	NA	NA	NA	NA
38706:38722	attL	GCAGACTCACCGGCTGG	NA	NA	NA	NA
AUM10736.1|49273_49579_+	hypothetical protein	NA	NA	NA	NA	NA
AUM10850.1|50495_50738_+	hemagglutinin	NA	NA	NA	NA	NA
AUM10737.1|50879_51575_-	hypothetical protein	NA	Q1MVP5	Enterobacteria_phage	52.6	7.2e-64
AUM10738.1|51625_52372_-	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	48.5	5.0e-55
AUM10739.1|52402_52513_+|integrase	integrase	integrase	NA	NA	NA	NA
AUM10740.1|52526_53549_+|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	99.4	6.0e-200
AUM10741.1|53545_54328_+|transposase	transposase	transposase	A0A2L1IVB6	Escherichia_phage	99.6	5.9e-139
AUM10742.1|54337_55888_-|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	46.6	1.2e-124
62915:62931	attR	CCAGCCGGTGAGTCTGC	NA	NA	NA	NA
>prophage 2
CP022280	Escherichia coli strain STEC299 plasmid pSTEC299_1, complete sequence	191691	66735	114520	191691	transposase	Escherichia_phage(45.45%)	47	NA	NA
AUM10752.1|66735_67898_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	41.3	1.2e-52
AUM10753.1|70955_71432_+	type VI secretion protein	NA	NA	NA	NA	NA
AUM10754.1|71434_72913_+	EvpB family type VI secretion protein	NA	NA	NA	NA	NA
AUM10755.1|72922_73444_+	type VI secretion protein	NA	NA	NA	NA	NA
AUM10756.1|73452_73875_+	lysozyme family protein	NA	NA	NA	NA	NA
AUM10757.1|73867_75670_+	type VI secretion system ImpG/VasA family protein	NA	NA	NA	NA	NA
AUM10758.1|75660_76593_+	type VI secretion protein	NA	NA	NA	NA	NA
AUM10759.1|76605_78645_+	type VI secretion protein	NA	A0A077K8Q4	Ralstonia_phage	36.4	2.0e-13
AUM10760.1|78655_79123_+	type VI secretion protein	NA	NA	NA	NA	NA
AUM10761.1|79131_79431_+	type VI secretion protein	NA	NA	NA	NA	NA
AUM10762.1|79434_80511_+	type VI secretion system-associated protein	NA	NA	NA	NA	NA
AUM10763.1|80518_81070_+	type VI secretion protein	NA	NA	NA	NA	NA
AUM10764.1|81088_82453_+	type VI secretion system-associated protein	NA	NA	NA	NA	NA
AUM10765.1|82806_83424_+	type IV secretion protein DotU	NA	NA	NA	NA	NA
AUM10766.1|83430_86835_+	type VI secretion protein	NA	NA	NA	NA	NA
AUM10767.1|86838_89367_+	ClpV1 family T6SS ATPase	NA	A0A1C3S747	Escherichia_phage	34.0	6.4e-94
AUM10768.1|90068_91214_+	hypothetical protein	NA	NA	NA	NA	NA
AUM10769.1|91400_91901_+	kinesin	NA	NA	NA	NA	NA
AUM10770.1|91939_92503_+	hypothetical protein	NA	NA	NA	NA	NA
AUM10771.1|92918_93323_+	hypothetical protein	NA	NA	NA	NA	NA
AUM10772.1|93509_94100_+	hypothetical protein	NA	NA	NA	NA	NA
AUM10851.1|94464_94869_+	hypothetical protein	NA	NA	NA	NA	NA
AUM10773.1|96394_96901_+	kinesin	NA	NA	NA	NA	NA
AUM10852.1|97212_97512_+	hypothetical protein	NA	NA	NA	NA	NA
AUM10774.1|97797_98394_+	hypothetical protein	NA	NA	NA	NA	NA
AUM10775.1|98449_98656_+	hemolysin activation protein	NA	NA	NA	NA	NA
AUM10853.1|98730_99237_+|transposase	transposase	transposase	NA	NA	NA	NA
AUM10776.1|99925_100573_+|transposase	transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	46.0	4.1e-21
AUM10777.1|100572_100884_+|transposase	transposase	transposase	A0A0P0ZDM8	Stx2-converting_phage	78.4	7.4e-45
AUM10778.1|102600_102966_-|transposase	transposase	transposase	NA	NA	NA	NA
AUM10779.1|102893_103166_-	hypothetical protein	NA	NA	NA	NA	NA
AUM10780.1|103423_103810_-	type II toxin-antitoxin system death-on-curing family toxin	NA	Q71T66	Escherichia_phage	50.4	2.5e-26
AUM10781.1|103806_104031_-	toxin-antitoxin system antitoxin subunit	NA	A0A222YXU1	Escherichia_phage	43.2	1.1e-05
AUM10782.1|104514_104694_+	hypothetical protein	NA	NA	NA	NA	NA
AUM10783.1|104757_105738_+	recombinase	NA	A0A0A7NPX4	Enterobacteria_phage	51.7	5.5e-86
AUM10784.1|105740_106163_+	plasmid stability family protein	NA	NA	NA	NA	NA
AUM10785.1|106166_106478_+	hypothetical protein	NA	NA	NA	NA	NA
AUM10786.1|106561_107281_+	hypothetical protein	NA	NA	NA	NA	NA
AUM10787.1|107296_108079_-|transposase	transposase	transposase	A0A2L1IVB6	Escherichia_phage	96.9	3.6e-136
AUM10788.1|108075_109098_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	92.1	4.4e-187
AUM10789.1|109805_109997_-	hypothetical protein	NA	NA	NA	NA	NA
AUM10790.1|109993_110416_-	hypothetical protein	NA	NA	NA	NA	NA
AUM10791.1|110462_110765_-	antirestriction protein	NA	NA	NA	NA	NA
AUM10792.1|111870_112305_-	hypothetical protein	NA	NA	NA	NA	NA
AUM10793.1|112316_112538_-	hypothetical protein	NA	NA	NA	NA	NA
AUM10794.1|112538_113222_-	DNA methylase	NA	A0A2I7RE86	Vibrio_phage	36.4	1.5e-29
AUM10795.1|113500_114520_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 1
CP022281	Escherichia coli strain STEC299 plasmid pSTEC299_2, complete sequence	59190	1630	10528	59190	transposase	Stx2-converting_phage(50.0%)	6	NA	NA
AUM10867.1|1630_1819_-|transposase	transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	59.7	3.1e-14
AUM10868.1|1764_2682_-	hypothetical protein	NA	A0A0P0ZEB3	Stx2-converting_phage	66.7	2.5e-104
AUM10869.1|3223_3571_-|transposase	transposase	transposase	A0A0P0ZDM8	Stx2-converting_phage	76.6	2.6e-46
AUM10870.1|3699_4482_-|transposase	transposase	transposase	A0A2L1IVB6	Escherichia_phage	99.2	2.2e-138
AUM10871.1|4478_5501_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	99.4	6.0e-200
AUM10872.1|6427_10528_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	Q9LA54	Enterobacteria_phage	45.0	0.0e+00
