assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002860105.1_ASM286010v1	CP019071	Escherichia coli strain CRE1493 chromosome, complete genome	1	1083210-1083544	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCGA,GTGTTCCCCGCGCCAGCGGGGATAAACC	28,30,28	0	0	NA	NA	I-E:I-E:I-E	5,5,5	5	Unclear	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|47aa|up_1|CP019071.1_1081919_1082060_-,NA	NA|434aa|up_9|CP019071.1_1072616_1073918_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|CP019071.1_1073965_1076200_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|CP019071.1_1076277_1076526_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|CP019071.1_1076525_1076861_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|CP019071.1_1076931_1077723_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|CP019071.1_1077950_1079588_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|CP019071.1_1079675_1080974_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|CP019071.1_1081033_1081906_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|CP019071.1_1081919_1082060_-	NA	NA|224aa|up_0|CP019071.1_1082198_1082870_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|CP019071.1_1084181_1085660_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|CP019071.1_1085686_1086964_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|CP019071.1_1087282_1088068_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|CP019071.1_1088137_1089592_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|CP019071.1_1089613_1091023_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|CP019071.1_1091000_1091780_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|CP019071.1_1091776_1092637_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|CP019071.1_1092784_1093360_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|CP019071.1_1093376_1093637_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|CP019071.1_1093627_1094899_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCA_002860105.1_ASM286010v1	CP019071	Escherichia coli strain CRE1493 chromosome, complete genome	2	1109093-1109794	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	7,11,11	11	TypeI-E	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|571aa|up_9|CP019071.1_1097456_1099169_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|CP019071.1_1099243_1099978_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|up_7|CP019071.1_1100336_1103003_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|495aa|up_6|CP019071.1_1103441_1104926_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_5|CP019071.1_1104918_1105401_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|CP019071.1_1105413_1106505_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|CP019071.1_1106507_1107182_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|CP019071.1_1107168_1107768_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|CP019071.1_1107783_1108701_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|CP019071.1_1108702_1108987_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|CP019071.1_1109876_1110914_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP019071.1_1111165_1112074_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|CP019071.1_1112075_1113503_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP019071.1_1113502_1114108_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|CP019071.1_1114157_1114481_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP019071.1_1114674_1114986_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP019071.1_1115004_1115715_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP019071.1_1115714_1116194_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP019071.1_1116190_1117240_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP019071.1_1117220_1117982_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_002860105.1_ASM286010v1	CP019071	Escherichia coli strain CRE1493 chromosome, complete genome	3	1604125-1604242	3	CRISPRCasFinder	no		cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|28aa|up_3|CP019071.1_1601776_1601860_+,NA|48aa|down_1|CP019071.1_1606627_1606771_-	NA|397aa|up_9|CP019071.1_1594700_1595891_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_8|CP019071.1_1595887_1597147_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_7|CP019071.1_1597136_1598765_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_6|CP019071.1_1599037_1600396_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_5|CP019071.1_1600400_1601477_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|69aa|up_4|CP019071.1_1601518_1601725_-	PRK09729, PRK09729, hypothetical protein; Provisional	NA|28aa|up_3|CP019071.1_1601776_1601860_+	NA	NA|217aa|up_2|CP019071.1_1601939_1602590_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|CP019071.1_1602643_1602898_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|CP019071.1_1602897_1604028_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|CP019071.1_1604261_1606547_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|48aa|down_1|CP019071.1_1606627_1606771_-	NA	NA|1251aa|down_2|CP019071.1_1607242_1610995_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_3|CP019071.1_1611122_1611845_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_4|CP019071.1_1611991_1614619_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_5|CP019071.1_1614767_1616456_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_6|CP019071.1_1616452_1617076_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1535aa|down_7|CP019071.1_1617009_1621614_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_8|CP019071.1_1621614_1623264_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_9|CP019071.1_1623268_1624045_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]
GCA_002860105.1_ASM286010v1	CP019071	Escherichia coli strain CRE1493 chromosome, complete genome	4	2266135-2266258	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA|75aa|down_7|CP019071.1_2274843_2275068_-,NA|30aa|down_8|CP019071.1_2275154_2275244_+	NA|471aa|up_9|CP019071.1_2255589_2257002_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|CP019071.1_2257558_2257768_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|CP019071.1_2258222_2258849_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|CP019071.1_2258869_2260972_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|CP019071.1_2260975_2261623_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|240aa|up_4|CP019071.1_2261635_2262355_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|CP019071.1_2262351_2263137_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|CP019071.1_2263140_2263953_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|CP019071.1_2263964_2265569_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|CP019071.1_2265694_2266000_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|CP019071.1_2266572_2267829_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|CP019071.1_2267869_2269243_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|CP019071.1_2269457_2270099_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|CP019071.1_2270138_2271287_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|CP019071.1_2271577_2272789_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|CP019071.1_2272901_2273834_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|CP019071.1_2273830_2274856_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|75aa|down_7|CP019071.1_2274843_2275068_-	NA	NA|30aa|down_8|CP019071.1_2275154_2275244_+	NA	NA|390aa|down_9|CP019071.1_2275409_2276579_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
GCA_002860105.1_ASM286010v1	CP019071	Escherichia coli strain CRE1493 chromosome, complete genome	6	3195088-3195232	6	CRISPRCasFinder	no		cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|60aa|up_1|CP019071.1_3193501_3193681_+,NA|70aa|down_9|CP019071.1_3205952_3206162_-	NA|303aa|up_9|CP019071.1_3184372_3185281_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_8|CP019071.1_3185472_3187494_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_7|CP019071.1_3188072_3188750_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_6|CP019071.1_3188742_3189498_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_5|CP019071.1_3189484_3190639_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_4|CP019071.1_3190635_3191676_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_3|CP019071.1_3191762_3193052_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_2|CP019071.1_3193110_3193587_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|60aa|up_1|CP019071.1_3193501_3193681_+	NA	NA|428aa|up_0|CP019071.1_3193738_3195022_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|CP019071.1_3195255_3197517_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|CP019071.1_3197699_3199133_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|CP019071.1_3199208_3200261_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|CP019071.1_3200444_3201398_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|CP019071.1_3201438_3202434_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|CP019071.1_3202588_3203407_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|CP019071.1_3203407_3204466_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|CP019071.1_3204468_3205158_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|CP019071.1_3205157_3205931_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|70aa|down_9|CP019071.1_3205952_3206162_-	NA
GCA_002860105.1_ASM286010v1	CP019071	Escherichia coli strain CRE1493 chromosome, complete genome	7	3445984-3446080	7	CRISPRCasFinder	no		cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|231aa|up_9|CP019071.1_3437779_3438472_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|CP019071.1_3438691_3439234_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|CP019071.1_3439704_3440571_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|78aa|up_6|CP019071.1_3440551_3440785_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|CP019071.1_3440892_3441414_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|CP019071.1_3441449_3442835_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|CP019071.1_3443008_3443503_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|CP019071.1_3443505_3444228_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|CP019071.1_3444345_3444855_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|CP019071.1_3444851_3445919_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|CP019071.1_3446113_3447007_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|CP019071.1_3447003_3447819_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|CP019071.1_3447829_3449089_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|CP019071.1_3449098_3450766_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|CP019071.1_3451082_3452132_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|CP019071.1_3452153_3453389_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|CP019071.1_3453399_3454185_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|CP019071.1_3454412_3455558_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|CP019071.1_3455579_3456881_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|CP019071.1_3456937_3458299_-	PRK08044, PRK08044, allantoinase AllB
