The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP017924	Bordetella pertussis strain J173, complete genome	4106356	27282	122072	4106356	transposase,tRNA,protease	Planktothrix_phage(25.0%)	94	NA	NA
AUK77319.1|27282_28185_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77320.1|28314_28614_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77321.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77322.1|29141_30359_-	thiolase	NA	NA	NA	NA	NA
AUK77323.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AUK77324.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK80648.1|32214_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK77325.1|33048_34470_+	2-methylcitrate dehydratase	NA	NA	NA	NA	NA
AUK77326.1|35571_36762_-	MFS transporter	NA	NA	NA	NA	NA
AUK77327.1|37011_37923_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AUK77328.1|37924_40063_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AUK77329.1|40059_40599_+	D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AUK77330.1|40602_41331_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AUK77331.1|41317_42211_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77332.1|42281_42677_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AUK77333.1|42686_43217_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AUK77334.1|43345_43525_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77335.1|43662_44613_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK80649.1|45223_45748_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77336.1|45719_45956_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AUK77337.1|46083_46977_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77338.1|48146_49394_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AUK77339.1|49390_50005_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AUK77340.1|50188_51091_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77341.1|51133_52390_+	muropeptide transporter AmpG	NA	NA	NA	NA	NA
AUK77342.1|53621_54356_-	glutamate racemase	NA	NA	NA	NA	NA
AUK77343.1|54361_54952_-	arginine transporter ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AUK77344.1|54976_55666_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK77345.1|55662_56424_-	glutamate ABC transporter permease	NA	NA	NA	NA	NA
AUK77346.1|56503_57403_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK77347.1|57496_58447_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77348.1|59247_60474_-	serine kinase HipA	NA	NA	NA	NA	NA
AUK77349.1|60473_60893_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK80650.1|61076_62018_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77350.1|62441_63416_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77351.1|63472_64054_-|protease	protease	protease	NA	NA	NA	NA
AUK77352.1|64066_64369_-	ferredoxin	NA	NA	NA	NA	NA
AUK77353.1|64487_65546_-	oxidoreductase	NA	NA	NA	NA	NA
AUK77354.1|65580_66852_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77355.1|66882_67137_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77356.1|67481_68663_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77357.1|69132_70035_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77358.1|70128_70443_+|transposase	transposase	transposase	NA	NA	NA	NA
AUK77359.1|71635_73543_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AUK77360.1|73704_74325_-	glutathione S-transferase	NA	NA	NA	NA	NA
AUK77361.1|74356_74938_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AUK77362.1|75026_75278_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77363.1|75279_76122_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77364.1|76227_77637_+	signal recognition particle protein	NA	NA	NA	NA	NA
AUK77365.1|77633_78584_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK80651.1|78658_79603_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77366.1|79599_81474_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AUK77367.1|82821_83526_-	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AUK77368.1|83522_84629_-	glycosyl transferase	NA	NA	NA	NA	NA
AUK77369.1|84890_85484_-	sugar transferase	NA	NA	NA	NA	NA
AUK77370.1|85480_86668_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AUK77371.1|86730_87990_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AUK77372.1|88013_89102_-	UDP-N-acetylglucosamine 2-epimerase	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AUK77373.1|89109_90210_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AUK77374.1|90213_90789_-	N-acetyltransferase	NA	NA	NA	NA	NA
AUK77375.1|90792_91845_-	oxidoreductase	NA	NA	NA	NA	NA
AUK77376.1|91975_92983_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AUK77377.1|92984_94271_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AUK77378.1|94287_94443_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77379.1|94467_95271_-	pantothenate kinase	NA	NA	NA	NA	NA
AUK77380.1|95267_96134_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AUK77381.1|96208_97339_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK77382.1|97338_98178_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AUK77383.1|98331_98799_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77384.1|98888_99110_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77385.1|99110_99713_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77386.1|99742_100396_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK80652.1|100606_101785_+	peptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	5.8e-66
AUK77387.1|101865_102732_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AUK77388.1|102807_103083_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AUK77389.1|103090_103753_+	octanoyltransferase	NA	NA	NA	NA	NA
AUK77390.1|103814_104816_+	lipoyl synthase	NA	NA	NA	NA	NA
AUK77391.1|104830_105379_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AUK77392.1|105436_106333_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AUK77393.1|106329_107391_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AUK77394.1|107426_108329_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77395.1|109276_110470_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AUK77396.1|110551_111181_-	thiol:disulfide interchange protein	NA	NA	NA	NA	NA
AUK77397.1|111242_111926_-	cell division protein	NA	NA	NA	NA	NA
AUK77398.1|111935_113618_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AUK80653.1|113905_114253_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77399.1|114343_114661_+	hypothetical protein	NA	NA	NA	NA	NA
AUK80654.1|114943_115960_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK77400.1|116035_116836_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK77401.1|116832_117708_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK77402.1|117718_119011_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK77403.1|119053_120094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AUK77404.1|120199_121021_-	phosphodiesterase	NA	NA	NA	NA	NA
AUK77405.1|121121_122072_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP017924	Bordetella pertussis strain J173, complete genome	4106356	164892	301499	4106356	transposase,tRNA,protease	Klosneuvirus(10.53%)	117	NA	NA
AUK77442.1|164892_165843_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77443.1|167286_168189_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77444.1|168166_168796_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77445.1|169078_170509_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
AUK77446.1|170542_171172_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AUK77447.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AUK77448.1|172864_173536_+	hypothetical protein	NA	NA	NA	NA	NA
AUK80656.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
AUK77449.1|174348_175251_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77450.1|176366_176894_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77451.1|176985_177801_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77452.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
AUK77453.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AUK77454.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77455.1|181335_182421_+	ATP-binding protein	NA	NA	NA	NA	NA
AUK77456.1|182424_184329_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77457.1|184325_188000_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77458.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AUK77459.1|188631_189054_-	glyoxalase	NA	NA	NA	NA	NA
AUK77460.1|189081_189501_-	glyoxalase	NA	NA	NA	NA	NA
AUK77461.1|189529_189877_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK80657.1|190150_190600_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77462.1|190754_193025_+	lysine decarboxylase	NA	NA	NA	NA	NA
AUK77463.1|193100_194306_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77464.1|194452_195355_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77465.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
AUK77466.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AUK77467.1|197377_198478_+	glycine cleavage system protein T	NA	NA	NA	NA	NA
AUK77468.1|198559_198934_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AUK77469.1|198993_201858_+	glycine dehydrogenase (aminomethyl-transferring)	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AUK77470.1|202002_202743_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK77471.1|202812_204024_+	formyl-CoA transferase	NA	NA	NA	NA	NA
AUK77472.1|204052_205021_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77473.1|206740_207064_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AUK80658.1|207168_208209_-	cyclase	NA	NA	NA	NA	NA
AUK77474.1|208214_208994_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AUK77475.1|209039_209336_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77476.1|209361_209637_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AUK77477.1|209693_210338_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AUK77478.1|210337_211024_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AUK80659.1|211222_212005_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK77479.1|212055_212781_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK77480.1|212812_214162_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AUK77481.1|214273_215206_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK77482.1|215663_218459_-	peptidase S8	NA	NA	NA	NA	NA
AUK77483.1|219052_221896_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AUK77484.1|222066_222786_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AUK77485.1|222824_223373_-	GNAT family N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AUK77486.1|223527_224427_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AUK77487.1|224451_225402_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77488.1|225619_226315_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK77489.1|226331_227744_+	hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
AUK77490.1|227856_229287_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AUK77491.1|229328_231242_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
AUK77492.1|231560_232127_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
AUK77493.1|232217_233219_+	restriction endonuclease	NA	NA	NA	NA	NA
AUK77494.1|233333_234284_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77495.1|234370_235321_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77496.1|235317_236268_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77497.1|236366_237164_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AUK77498.1|238113_238524_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AUK77499.1|238773_239529_+	gamma-hydroxybutyrate dehydrogenase	NA	D2K0C8	Staphylococcus_phage	55.0	4.6e-32
AUK77500.1|239545_240289_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK77501.1|240332_241376_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK80660.1|242389_243649_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77502.1|245059_246016_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77503.1|246034_246526_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AUK77504.1|246522_247878_-	poly(A) polymerase	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AUK77505.1|247878_248577_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77506.1|248573_249275_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AUK77507.1|249527_250577_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AUK77508.1|250682_251624_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AUK77509.1|251620_253510_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AUK80661.1|253614_254235_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77510.1|254377_255763_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
AUK77511.1|255693_256230_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AUK77512.1|256381_257773_+	fumarate hydratase, class II	NA	NA	NA	NA	NA
AUK77513.1|257789_258770_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77514.1|258905_259889_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK77515.1|259953_260853_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK77516.1|260959_262714_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AUK77517.1|262721_263846_-	carnitine dehydratase	NA	NA	NA	NA	NA
AUK77518.1|263859_264840_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK77519.1|265570_266521_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77520.1|266535_266907_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77521.1|267080_267626_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AUK77522.1|267751_269329_+	cytochrome d terminal oxidase subunit 1	NA	NA	NA	NA	NA
AUK77523.1|269344_270499_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AUK77524.1|270512_270638_+	cyd operon protein YbgT	NA	NA	NA	NA	NA
AUK77525.1|270634_272386_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AUK77526.1|272382_274062_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AUK77527.1|274124_274673_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
AUK77528.1|275815_276094_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77529.1|277137_278088_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77530.1|278364_278526_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AUK77531.1|278533_278674_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77532.1|279192_279642_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AUK77533.1|279651_280263_-	glutathione S-transferase	NA	NA	NA	NA	NA
AUK77534.1|280421_281270_-	cytochrome c1	NA	NA	NA	NA	NA
AUK77535.1|281295_282678_-	cytochrome b	NA	NA	NA	NA	NA
AUK77536.1|282742_283384_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AUK77537.1|283523_283982_+	large-conductance mechanosensitive channel protein	NA	NA	NA	NA	NA
AUK77538.1|284006_284783_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AUK80662.1|284836_285973_+	2-alkenal reductase	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AUK77539.1|285969_286920_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77540.1|287018_287645_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77541.1|287667_288594_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AUK77542.1|288602_290189_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK77543.1|290185_291190_-	acetylesterase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
AUK77544.1|291389_292250_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK77545.1|292281_293283_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77546.1|293353_294163_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK77547.1|294240_296100_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AUK77548.1|296228_297431_-	MFS transporter	NA	NA	NA	NA	NA
AUK77549.1|297544_298426_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK77550.1|299928_300489_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
AUK77551.1|300548_301499_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP017924	Bordetella pertussis strain J173, complete genome	4106356	390852	448361	4106356	transposase	Orpheovirus(14.29%)	50	NA	NA
AUK77637.1|390852_391803_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77638.1|391945_392857_+	reductase	NA	NA	NA	NA	NA
AUK77639.1|392853_393102_+	NrdH-redoxin	NA	NA	NA	NA	NA
AUK77640.1|393098_394304_+	CoA transferase	NA	NA	NA	NA	NA
AUK77641.1|394376_395372_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77642.1|395394_396615_-	acyl-CoA transferase	NA	NA	NA	NA	NA
AUK77643.1|396611_397256_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77644.1|397252_397645_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77645.1|397533_398886_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77646.1|398986_399796_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK80668.1|400100_401054_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
AUK77647.1|401152_402136_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77648.1|402812_403583_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK77649.1|403579_404758_-	carnitine dehydratase	NA	NA	NA	NA	NA
AUK77650.1|404925_406632_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AUK77651.1|406628_407525_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK77652.1|407565_409155_-	sulfurtransferase	NA	NA	NA	NA	NA
AUK77653.1|409204_410197_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77654.1|410265_410865_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77655.1|411325_412306_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77656.1|412381_413284_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77657.1|413420_414335_+	EamA family transporter	NA	NA	NA	NA	NA
AUK77658.1|414331_414991_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77659.1|415080_416004_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AUK77660.1|416009_416465_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77661.1|416461_417565_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77662.1|417752_419372_-	dolichyl-phosphate-mannose--protein mannosyltransferase	NA	NA	NA	NA	NA
AUK77663.1|419368_420427_-	glycosyltransferase	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AUK77664.1|420556_421051_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK77665.1|421143_422121_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77666.1|422316_423522_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
AUK77667.1|423518_425030_+	TRAP ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK80669.1|425045_426359_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AUK77668.1|426549_426729_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77669.1|427138_427873_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AUK77670.1|430365_431268_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77671.1|431399_431798_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AUK77672.1|432208_432679_-	universal stress protein	NA	NA	NA	NA	NA
AUK77673.1|432767_433112_-	TIGR01244 family protein	NA	NA	NA	NA	NA
AUK77674.1|433211_434612_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK77675.1|436400_436919_-	methyltransferase	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AUK77676.1|437029_437785_+	hypothetical protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AUK77677.1|437980_439213_+	CoA transferase	NA	NA	NA	NA	NA
AUK77678.1|439205_439991_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK77679.1|440057_441029_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK77680.1|441039_442017_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK77681.1|442142_443315_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK77682.1|443341_444370_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK77683.1|444435_445629_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AUK77684.1|447410_448361_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP017924	Bordetella pertussis strain J173, complete genome	4106356	619748	720212	4106356	transposase,tail,tRNA,terminase	uncultured_Caudovirales_phage(14.29%)	110	NA	NA
AUK77837.1|619748_620699_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77838.1|621397_621781_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77839.1|621838_622441_+	hypothetical protein	NA	NA	NA	NA	NA
AUK80676.1|622458_622860_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77840.1|622975_623887_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK77841.1|623883_624465_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AUK80677.1|625268_625994_+	arginyltransferase	NA	NA	NA	NA	NA
AUK77842.1|626034_627084_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AUK77843.1|627231_627810_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA	NA
AUK77844.1|628196_629174_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK77845.1|629267_633662_-	dermonecrotic toxin	NA	NA	NA	NA	NA
AUK77846.1|633862_634711_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK77847.1|634869_635682_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
AUK77848.1|635737_636688_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77849.1|636786_637587_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77850.1|637648_638032_+	thiol reductase thioredoxin	NA	NA	NA	NA	NA
AUK77851.1|638043_639477_-	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AUK77852.1|639683_640013_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77853.1|640015_640765_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77854.1|640947_641868_+	branched chain amino acid aminotransferase	NA	NA	NA	NA	NA
AUK77855.1|641914_642127_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77856.1|642149_642572_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AUK77857.1|642588_643689_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK77858.1|643785_645303_-	peptidase	NA	NA	NA	NA	NA
AUK77859.1|645378_646218_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AUK80678.1|646239_647112_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77860.1|647202_648297_-	porin	NA	NA	NA	NA	NA
AUK77861.1|648590_649493_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK80679.1|649615_650557_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77862.1|650640_651000_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77863.1|651381_652419_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77864.1|652735_654076_+	Xaa-Pro aminopeptidase	NA	NA	NA	NA	NA
AUK77865.1|654085_654538_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77866.1|654643_655816_+	monooxygenase	NA	NA	NA	NA	NA
AUK77867.1|655881_656907_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AUK77868.1|656947_657187_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AUK77869.1|657256_658846_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AUK77870.1|658845_659394_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AUK77871.1|659474_660047_+	Holliday junction DNA helicase RuvA	NA	NA	NA	NA	NA
AUK77872.1|660065_660977_-	NAD-dependent dehydratase	NA	NA	NA	NA	NA
AUK77873.1|661050_662019_-	serine dehydratase	NA	NA	NA	NA	NA
AUK77874.1|662141_663215_+	Holliday junction DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AUK77875.1|663219_665040_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AUK77876.1|665116_666019_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77877.1|666155_666491_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77878.1|666624_667275_+	carbonate dehydratase	NA	NA	NA	NA	NA
AUK77879.1|667296_668715_-	amidase	NA	NA	NA	NA	NA
AUK77880.1|668784_669540_-	hypothetical protein	NA	NA	NA	NA	NA
AUK80680.1|669508_670267_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK77881.1|670277_671159_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK77882.1|671175_671883_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AUK77883.1|671885_672644_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AUK77884.1|672853_674596_+	sulfite reductase	NA	NA	NA	NA	NA
AUK77885.1|674588_675113_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77886.1|675152_675947_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK77887.1|676114_677188_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77888.1|677286_678237_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77889.1|678488_678695_-	hypothetical protein	NA	NA	NA	NA	NA
AUK80681.1|678766_679378_-	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AUK77890.1|679857_680178_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77891.1|680170_680869_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77892.1|680883_681105_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77893.1|681122_682073_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77894.1|682712_683198_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
AUK77895.1|683184_684462_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AUK77896.1|684464_685883_+	hypothetical protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AUK77897.1|685854_686967_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	49.7	2.1e-102
AUK77898.1|686972_687215_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AUK77899.1|687337_687940_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AUK77900.1|688368_689319_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77901.1|689993_690245_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77902.1|690307_690790_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AUK77903.1|690791_690992_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77904.1|690991_691387_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AUK77905.1|691383_691782_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AUK77906.1|691778_692201_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77907.1|692208_692709_+	hypothetical protein	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AUK77908.1|692963_693482_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AUK77909.1|693491_693821_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AUK77910.1|693838_694129_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AUK77911.1|694154_696767_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AUK77912.1|696776_697136_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77913.1|697203_697737_+	hypothetical protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AUK77914.1|697733_698123_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AUK77915.1|698115_702072_+	hypothetical protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AUK77916.1|702076_702493_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77917.1|702711_702975_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AUK77918.1|702974_703787_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77919.1|703791_704034_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77920.1|704012_704564_+	lysozyme	NA	NA	NA	NA	NA
AUK77921.1|704563_705079_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77922.1|705075_705357_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77923.1|705356_705578_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77924.1|705906_706578_-	hypothetical protein	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AUK77925.1|706505_706874_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77926.1|706933_707620_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AUK77927.1|707600_708173_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AUK77928.1|708238_709969_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AUK77929.1|710021_710450_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AUK77930.1|710452_711133_+	protein TolQ	NA	NA	NA	NA	NA
AUK77931.1|711132_711591_+	protein TolR	NA	NA	NA	NA	NA
AUK77932.1|711627_712602_+	protein TolA	NA	NA	NA	NA	NA
AUK77933.1|712618_713935_+	Tol-Pal system beta propeller repeat protein TolB	NA	NA	NA	NA	NA
AUK77934.1|713966_714464_+	peptidoglycan-associated lipoprotein	NA	NA	NA	NA	NA
AUK77935.1|714550_715240_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AUK77936.1|715239_716289_+	iron-siderophore ABC transporter permease	NA	NA	NA	NA	NA
AUK77937.1|716285_717080_+	iron ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AUK77938.1|717248_717599_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77939.1|717574_718132_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77940.1|719261_720212_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP017924	Bordetella pertussis strain J173, complete genome	4106356	858741	912872	4106356	transposase,holin	Vibrio_phage(25.0%)	44	NA	NA
AUK78046.1|858741_860700_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AUK78047.1|860782_861733_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78048.1|861953_862622_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK78049.1|862745_863852_+	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AUK78050.1|863864_866978_+	multidrug efflux protein	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AUK78051.1|866974_868468_+	RND transporter	NA	NA	NA	NA	NA
AUK78052.1|868482_869154_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUK80691.1|869197_869650_-	azurin	NA	NA	NA	NA	NA
AUK78053.1|869832_870480_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK80692.1|870583_872632_+	hydantoinase	NA	NA	NA	NA	NA
AUK78054.1|872628_874641_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AUK78055.1|874666_876001_+	hypothetical protein	NA	NA	NA	NA	NA
AUK80693.1|876109_877102_+	hypothetical protein	NA	NA	NA	NA	NA
AUK78056.1|877168_879253_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AUK78057.1|879277_880249_-	hypothetical protein	NA	NA	NA	NA	NA
AUK78058.1|880377_881379_-	peptidase M14	NA	NA	NA	NA	NA
AUK78059.1|881412_882564_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AUK78060.1|882767_883658_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK78061.1|883735_884560_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK80694.1|884756_885773_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK78062.1|885969_886953_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK78063.1|887011_888139_-	argininosuccinate lyase	NA	NA	NA	NA	NA
AUK78064.1|888129_888504_-	hypothetical protein	NA	NA	NA	NA	NA
AUK78065.1|888551_889940_-	hypothetical protein	NA	NA	NA	NA	NA
AUK78066.1|889970_890960_-	hypothetical protein	NA	NA	NA	NA	NA
AUK78067.1|891070_892303_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AUK78068.1|892584_893385_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK78069.1|893407_895639_-|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AUK78070.1|896426_896873_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AUK78071.1|896894_897641_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AUK78072.1|897784_898762_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AUK78073.1|899395_900007_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AUK78074.1|900000_901218_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
AUK78075.1|901358_902309_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78076.1|902305_903025_-	hypothetical protein	NA	NA	NA	NA	NA
AUK78077.1|903145_905305_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
AUK78078.1|905395_905665_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
AUK80695.1|905958_906486_+	hypothetical protein	NA	NA	NA	NA	NA
AUK78079.1|906504_907284_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AUK78080.1|907451_908468_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AUK78081.1|908540_909032_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
AUK78082.1|909042_910758_-	acetolactate synthase, large subunit, biosynthetic type	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
AUK78083.1|911228_911840_+	hypothetical protein	NA	NA	NA	NA	NA
AUK78084.1|911921_912872_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP017924	Bordetella pertussis strain J173, complete genome	4106356	937371	999520	4106356	transposase	Bacillus_virus(15.38%)	57	NA	NA
AUK78105.1|937371_938274_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78106.1|938270_938654_-	Rieske (2Fe-2S) protein	NA	NA	NA	NA	NA
AUK78107.1|938708_940523_-	metal ABC transporter permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AUK80697.1|940672_941500_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AUK78108.1|941545_942526_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AUK78109.1|942522_942735_-	hypothetical protein	NA	NA	NA	NA	NA
AUK78110.1|942731_943913_-	hypothetical protein	NA	NA	NA	NA	NA
AUK78111.1|944076_944811_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AUK78112.1|944812_947425_-	penicillin-binding protein	NA	NA	NA	NA	NA
AUK78113.1|947560_949474_-	S9 family peptidase	NA	NA	NA	NA	NA
AUK78114.1|950089_950500_-	phenylacetic acid degradation protein	NA	NA	NA	NA	NA
AUK78115.1|950597_951683_+	DNA polymerase IV	NA	NA	NA	NA	NA
AUK78116.1|951781_952732_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78117.1|952728_953703_-	hypothetical protein	NA	NA	NA	NA	NA
AUK78118.1|953848_954739_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.3e-05
AUK80698.1|955015_955408_-	hypothetical protein	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AUK78119.1|955537_956488_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78120.1|956517_956700_-	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AUK78121.1|957472_958654_-	MFS transporter	NA	NA	NA	NA	NA
AUK78122.1|958869_959547_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AUK78123.1|959543_960269_-	bifunctional 3-demethylubiquinol 3-O-methyltransferase/2-polyprenyl-6-hydroxyphenol methylase	NA	NA	NA	NA	NA
AUK78124.1|960394_960976_-	hypothetical protein	NA	NA	NA	NA	NA
AUK78125.1|961346_964028_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AUK80699.1|964030_965161_+	phosphoserine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
AUK78126.1|965153_966239_+	chorismate mutase	NA	NA	NA	NA	NA
AUK78127.1|966325_967225_+	prephenate dehydrogenase	NA	NA	NA	NA	NA
AUK78128.1|967221_968550_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AUK78129.1|968564_969236_+	cytidylate kinase	NA	NA	NA	NA	NA
AUK78130.1|969423_971139_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AUK78131.1|971140_971500_+	integration host factor subunit beta	NA	NA	NA	NA	NA
AUK78132.1|971691_972006_+	hypothetical protein	NA	NA	NA	NA	NA
AUK78133.1|972048_973269_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AUK78134.1|973265_974207_+	hypothetical protein	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AUK78135.1|974203_975193_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AUK80700.1|975482_975812_+	hypothetical protein	NA	NA	NA	NA	NA
AUK78136.1|975910_976861_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78137.1|976941_977853_+	cysteine synthase B	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
AUK78138.1|977913_979059_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
AUK78139.1|979078_979993_+	deacetylase	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
AUK78140.1|980064_980814_+	electron transporter RnfB	NA	NA	NA	NA	NA
AUK78141.1|980813_981743_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
AUK78142.1|981986_983813_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK78143.1|983895_984537_+	peroxidase	NA	NA	NA	NA	NA
AUK78144.1|984726_985761_+	sulfate transporter subunit	NA	NA	NA	NA	NA
AUK78145.1|985776_985980_+	hypothetical protein	NA	NA	NA	NA	NA
AUK78146.1|986001_986676_+	sulfate ABC transporter permease subunit CysT	NA	NA	NA	NA	NA
AUK78147.1|986790_987573_+	sulfate ABC transporter permease subunit CysW	NA	NA	NA	NA	NA
AUK78148.1|987597_988662_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
AUK80701.1|989459_990368_+	sulfate adenylyltransferase small subunit	NA	NA	NA	NA	NA
AUK78149.1|991855_993130_+	radical SAM protein	NA	NA	NA	NA	NA
AUK78150.1|993283_993664_+	hypothetical protein	NA	NA	NA	NA	NA
AUK78151.1|993671_994544_-	multidrug DMT transporter permease	NA	NA	NA	NA	NA
AUK78152.1|994849_995230_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
AUK78153.1|995479_996166_+	coenzyme A pyrophosphatase	NA	NA	NA	NA	NA
AUK78154.1|996261_997212_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78155.1|997316_998366_+	aldo/keto reductase	NA	NA	NA	NA	NA
AUK80702.1|998503_999520_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP017924	Bordetella pertussis strain J173, complete genome	4106356	1023324	1081410	4106356	transposase,tRNA	uncultured_Mediterranean_phage(37.5%)	50	NA	NA
AUK78169.1|1023324_1024227_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78170.1|1024373_1025114_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AUK78171.1|1025308_1027345_+	transketolase	NA	NA	NA	NA	NA
AUK78172.1|1027362_1028373_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AUK78173.1|1028490_1029684_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AUK78174.1|1029713_1030487_-	enoyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA	NA
AUK78175.1|1030483_1031674_-	acetate kinase	NA	NA	NA	NA	NA
AUK78176.1|1031699_1032638_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AUK80705.1|1032634_1034983_-	3-hydroxyalkanoate synthetase	NA	NA	NA	NA	NA
AUK78177.1|1035137_1035779_-	glutathione S-transferase	NA	NA	NA	NA	NA
AUK78178.1|1037292_1037841_-	damage-inducible protein DinB	NA	NA	NA	NA	NA
AUK78179.1|1037859_1038345_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK78180.1|1038522_1039461_+	cytochrome C biogenesis protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AUK78181.1|1039463_1039781_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AUK78182.1|1039826_1040771_+	hypothetical protein	NA	NA	NA	NA	NA
AUK78183.1|1042451_1043102_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AUK78184.1|1043155_1043491_+	hypothetical protein	NA	NA	NA	NA	NA
AUK80706.1|1043505_1044348_+	peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AUK78185.1|1044364_1044646_-	hypothetical protein	NA	NA	NA	NA	NA
AUK78186.1|1044719_1044983_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AUK78187.1|1045226_1046177_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78188.1|1046475_1047213_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AUK78189.1|1047648_1047972_+	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AUK78190.1|1048006_1048567_+	transcriptional regulator FlhC	NA	NA	NA	NA	NA
AUK78191.1|1048687_1049563_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AUK78192.1|1049575_1050523_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
AUK78193.1|1050624_1050918_+	two-component system response regulator	NA	NA	NA	NA	NA
AUK78194.1|1050944_1053002_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
AUK78195.1|1053016_1053517_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
AUK78196.1|1053590_1055297_+	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AUK78197.1|1056160_1057213_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AUK78198.1|1057265_1057655_+	two-component system response regulator	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AUK78199.1|1057663_1058296_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
AUK80707.1|1058395_1059412_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK80708.1|1060242_1061250_+	aldo/keto reductase	NA	NA	NA	NA	NA
AUK78200.1|1061246_1062890_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AUK78201.1|1062886_1063774_-	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
AUK78202.1|1063914_1064388_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
AUK78203.1|1064377_1065400_-	phosphate starvation-inducible protein PhoH	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AUK78204.1|1065396_1066824_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AUK80709.1|1067761_1068778_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK78205.1|1069110_1070046_-	protein-export membrane protein SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AUK78206.1|1070095_1071976_-	protein-export membrane protein SecD	NA	NA	NA	NA	NA
AUK78207.1|1072042_1072387_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AUK78208.1|1072531_1073668_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AUK78209.1|1073664_1074738_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AUK78210.1|1074895_1076332_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AUK80710.1|1076422_1077064_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AUK80711.1|1077400_1078417_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK80712.1|1080459_1081410_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP017924	Bordetella pertussis strain J173, complete genome	4106356	1156524	1218647	4106356	transposase,tRNA	Erysipelothrix_phage(33.33%)	52	NA	NA
AUK78263.1|1156524_1157427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78264.1|1157573_1158197_-	fimbrial protein	NA	NA	NA	NA	NA
AUK78265.1|1158370_1160653_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AUK78266.1|1160807_1163504_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AUK78267.1|1163629_1164118_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AUK78268.1|1164153_1166016_+	oligopeptide transporter, OPT family	NA	NA	NA	NA	NA
AUK78269.1|1165994_1166204_+	hypothetical protein	NA	NA	NA	NA	NA
AUK78270.1|1166528_1169399_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AUK78271.1|1169444_1170659_+	dihydrolipoamide succinyltransferase	NA	NA	NA	NA	NA
AUK78272.1|1170888_1172316_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AUK78273.1|1172413_1173505_+	cell division protein ZapE	NA	NA	NA	NA	NA
AUK78274.1|1173517_1174276_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK78275.1|1174363_1175266_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK78276.1|1175262_1176213_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78277.1|1176342_1177326_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUK78278.1|1177380_1178103_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK78279.1|1179581_1180937_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AUK78280.1|1181017_1183393_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
AUK78281.1|1183557_1185633_+	helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
AUK80717.1|1185694_1186489_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
AUK78282.1|1186596_1187559_+	RNA pseudouridine synthase	NA	NA	NA	NA	NA
AUK78283.1|1187546_1188302_+	hypothetical protein	NA	NA	NA	NA	NA
AUK78284.1|1188409_1190047_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
AUK78285.1|1190114_1190852_+	beta-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK78286.1|1190954_1191530_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
AUK78287.1|1191702_1192239_+	hypothetical protein	NA	NA	NA	NA	NA
AUK80718.1|1192271_1192586_+	periplasmic lipoprotein involved in iron transport	NA	NA	NA	NA	NA
AUK78288.1|1192601_1193447_+	FTR1 family iron permease	NA	NA	NA	NA	NA
AUK78289.1|1193485_1194865_+	hypothetical protein	NA	NA	NA	NA	NA
AUK78290.1|1194942_1195824_+	phenazine biosynthesis protein PhzC/PhzF	NA	NA	NA	NA	NA
AUK78291.1|1195970_1196873_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78292.1|1196869_1197280_-	lactoylglutathione lyase	NA	NA	NA	NA	NA
AUK78293.1|1197387_1198242_-	2-pyrone-4,6-dicarboxylate hydrolase	NA	NA	NA	NA	NA
AUK78294.1|1198234_1199197_-	hypothetical protein	NA	NA	NA	NA	NA
AUK78295.1|1199242_1200367_-	racemase	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
AUK78296.1|1200472_1201351_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK78297.1|1201475_1202255_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK78298.1|1202408_1203830_+	MFS transporter	NA	NA	NA	NA	NA
AUK78299.1|1204264_1205962_+	sodium:proline symporter	NA	NA	NA	NA	NA
AUK78300.1|1205990_1206113_+	hypothetical protein	NA	NA	NA	NA	NA
AUK80719.1|1206188_1207130_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
AUK78301.1|1207456_1208203_+	hypothetical protein	NA	NA	NA	NA	NA
AUK78302.1|1208210_1209137_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK78303.1|1209258_1210176_+	oxidoreductase	NA	NA	NA	NA	NA
AUK78304.1|1210215_1211169_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK78305.1|1211193_1211772_+	hypothetical protein	NA	NA	NA	NA	NA
AUK78306.1|1213445_1214054_+	hypothetical protein	NA	NA	NA	NA	NA
AUK78307.1|1214131_1214485_-	hypothetical protein	NA	NA	NA	NA	NA
AUK80720.1|1214568_1215501_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AUK78308.1|1215808_1216711_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78309.1|1216797_1217748_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78310.1|1217744_1218647_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP017924	Bordetella pertussis strain J173, complete genome	4106356	1291657	1337386	4106356	transposase,tRNA	Salmonella_phage(33.33%)	44	NA	NA
AUK78362.1|1291657_1292608_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78363.1|1292587_1293169_-	hypothetical protein	NA	NA	NA	NA	NA
AUK78364.1|1293229_1294957_-	sodium-independent anion transporter	NA	NA	NA	NA	NA
AUK78365.1|1295068_1296427_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AUK78366.1|1296718_1297669_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78367.1|1297709_1298780_+	hypothetical protein	NA	NA	NA	NA	NA
AUK78368.1|1298802_1299681_-	hypothetical protein	NA	NA	NA	NA	NA
AUK78369.1|1299852_1300824_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK78370.1|1300986_1301829_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK78371.1|1301990_1302671_+	anti-sigma factor	NA	NA	NA	NA	NA
AUK78372.1|1302664_1303834_+	amine oxidase	NA	NA	NA	NA	NA
AUK78373.1|1303830_1304862_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AUK78374.1|1304929_1306147_+	MFS transporter	NA	NA	NA	NA	NA
AUK78375.1|1306181_1307714_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK78376.1|1307794_1308418_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK78377.1|1308448_1309060_+	RhtB family transporter	NA	NA	NA	NA	NA
AUK78378.1|1309095_1309566_+	histidine kinase	NA	NA	NA	NA	NA
AUK78379.1|1309997_1311002_+	peptidase M20	NA	NA	NA	NA	NA
AUK78380.1|1311038_1312553_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK78381.1|1312556_1313516_+	ABC transporter	NA	NA	NA	NA	NA
AUK78382.1|1313544_1314348_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
AUK78383.1|1314349_1315984_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AUK78384.1|1316067_1317129_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUK78385.1|1317600_1318125_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AUK78386.1|1318588_1319491_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78387.1|1319487_1320522_-	hydrolase	NA	NA	NA	NA	NA
AUK78388.1|1320630_1321269_+	hypothetical protein	NA	NA	NA	NA	NA
AUK78389.1|1321563_1321791_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK78390.1|1321913_1322627_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUK78391.1|1322871_1323822_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78392.1|1323961_1324207_+	hypothetical protein	NA	NA	NA	NA	NA
AUK78393.1|1324321_1325770_-	2-aminoadipate aminotransferase	NA	NA	NA	NA	NA
AUK78394.1|1325880_1326831_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78395.1|1326827_1327277_-	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
AUK78396.1|1328756_1328954_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
AUK78397.1|1328969_1329329_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
AUK78398.1|1329403_1330426_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
AUK78399.1|1330438_1332856_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AUK78400.1|1332873_1333203_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
AUK78401.1|1333261_1333672_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK78402.1|1334171_1335263_-	hypothetical protein	NA	NA	NA	NA	NA
AUK78403.1|1335449_1336043_+	twin-arginine translocation pathway signal	NA	NA	NA	NA	NA
AUK78404.1|1336142_1336325_-	hypothetical protein	NA	NA	NA	NA	NA
AUK78405.1|1336483_1337386_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP017924	Bordetella pertussis strain J173, complete genome	4106356	1572101	1643207	4106356	transposase	Ectocarpus_siliculosus_virus(11.11%)	55	NA	NA
AUK78613.1|1572101_1573052_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78614.1|1573073_1574294_+	YggW family oxidoreductase	NA	NA	NA	NA	NA
AUK78615.1|1574479_1575892_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AUK78616.1|1575955_1577023_+	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AUK78617.1|1577022_1578510_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AUK80738.1|1578519_1579464_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK78618.1|1579623_1580322_+	quercetin 2,3-dioxygenase	NA	NA	NA	NA	NA
AUK78619.1|1580399_1581305_+	hypothetical protein	NA	NA	NA	NA	NA
AUK78620.1|1581324_1582227_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78621.1|1582373_1583168_-	ABC transporter	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AUK78622.1|1583172_1584843_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AUK78623.1|1584966_1586016_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK78624.1|1586337_1587114_+	ferredoxin--NADP(+) reductase	NA	NA	NA	NA	NA
AUK78625.1|1587178_1588081_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK78626.1|1589374_1590178_+	2,5-didehydrogluconate reductase B	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AUK78627.1|1592871_1593258_+	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AUK78628.1|1593273_1595364_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
AUK78629.1|1595415_1596369_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AUK80739.1|1596383_1597271_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK78630.1|1597408_1598935_+	methylmalonate-semialdehyde dehydrogenase (acylating)	NA	NA	NA	NA	NA
AUK80740.1|1599033_1599534_+	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AUK78631.1|1599857_1601813_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AUK78632.1|1601980_1604065_-	hypothetical protein	NA	NA	NA	NA	NA
AUK80741.1|1604091_1604517_-	hypothetical protein	NA	NA	NA	NA	NA
AUK78633.1|1605732_1606503_+	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AUK78634.1|1606502_1607243_+	sugar ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUK78635.1|1607284_1608454_+	capsule biosynthesis protein	NA	NA	NA	NA	NA
AUK78636.1|1608485_1610570_+	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AUK78637.1|1610566_1611457_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AUK78638.1|1611453_1612551_+	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AUK78639.1|1612573_1613863_+	Vi polysaccharide biosynthesis protein VipA/TviB	NA	NA	NA	NA	NA
AUK78640.1|1613874_1614900_+	LPS biosynthesis protein WbpP	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AUK78641.1|1614896_1616954_+	beta-3-deoxy-D-manno-oct-2-ulosonic acid transferase	NA	NA	NA	NA	NA
AUK78642.1|1616967_1618143_+	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AUK78643.1|1618224_1619175_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78644.1|1619233_1620007_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK78645.1|1619999_1621556_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AUK78646.1|1621552_1622503_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78647.1|1623829_1624432_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK78648.1|1624671_1625373_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUK78649.1|1625366_1626149_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AUK78650.1|1626333_1627284_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78651.1|1627382_1628120_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AUK78652.1|1628309_1629068_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK78653.1|1629114_1630116_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK78654.1|1630281_1631250_-	phenol degradation protein meta	NA	NA	NA	NA	NA
AUK78655.1|1632789_1633758_+	AAA family ATPase	NA	NA	NA	NA	NA
AUK78656.1|1633766_1634708_+	MoxR protein	NA	NA	NA	NA	NA
AUK80742.1|1635181_1636192_+	hypothetical protein	NA	NA	NA	NA	NA
AUK80744.1|1636182_1637697_+	hypothetical protein	NA	NA	NA	NA	NA
AUK78657.1|1637693_1639040_+	hypothetical protein	NA	NA	NA	NA	NA
AUK80743.1|1639042_1640077_+	haloacid dehalogenase	NA	NA	NA	NA	NA
AUK78658.1|1640126_1641752_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AUK78659.1|1641845_1642325_+	hypothetical protein	NA	NA	NA	NA	NA
AUK78660.1|1642304_1643207_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP017924	Bordetella pertussis strain J173, complete genome	4106356	1664046	1725394	4106356	transposase,tRNA	uncultured_Caudovirales_phage(12.5%)	54	NA	NA
AUK78676.1|1664046_1664997_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78677.1|1665105_1665294_+	hypothetical protein	NA	NA	NA	NA	NA
AUK80748.1|1665290_1666013_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AUK78678.1|1666451_1667639_-	hypothetical protein	NA	NA	NA	NA	NA
AUK80749.1|1667642_1667993_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK78679.1|1668226_1669639_-	hypothetical protein	NA	NA	NA	NA	NA
AUK78680.1|1669742_1670714_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK78681.1|1670727_1671441_+	3-oxoacyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA	NA
AUK78682.1|1671445_1672363_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK78683.1|1672469_1672766_+	hypothetical protein	NA	NA	NA	NA	NA
AUK78684.1|1672912_1673815_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78685.1|1674973_1677907_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AUK78686.1|1677906_1678251_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AUK78687.1|1678247_1679876_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AUK78688.1|1679875_1680352_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AUK78689.1|1680351_1680633_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AUK78690.1|1680629_1680956_+	cation:proton antiporter	NA	NA	NA	NA	NA
AUK78691.1|1681111_1682062_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78692.1|1682105_1682648_+	hypothetical protein	NA	NA	NA	NA	NA
AUK78693.1|1682745_1683594_+	hydrolase	NA	NA	NA	NA	NA
AUK80750.1|1683643_1684093_+|tRNA	tRNA-specific adenosine deaminase	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
AUK78694.1|1684089_1685091_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
AUK78695.1|1685103_1685898_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK78696.1|1685946_1687848_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AUK78697.1|1687844_1688468_-	hypothetical protein	NA	NA	NA	NA	NA
AUK78698.1|1688594_1689719_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AUK78699.1|1690099_1691704_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
AUK78700.1|1691859_1692636_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AUK78701.1|1692720_1693719_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK78702.1|1693715_1694489_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK78703.1|1695473_1696424_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78704.1|1696447_1696912_-|tRNA	glutamyl-tRNA amidotransferase	tRNA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AUK78705.1|1697058_1698267_+	nitric oxide dioxygenase	NA	NA	NA	NA	NA
AUK78706.1|1698310_1698748_+	BadM/Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
AUK78707.1|1698866_1700156_+	D-amino acid dehydrogenase small subunit	NA	NA	NA	NA	NA
AUK78708.1|1702896_1703799_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78709.1|1703945_1704962_-	folate-binding protein YgfZ	NA	NA	NA	NA	NA
AUK78710.1|1705140_1706175_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
AUK78711.1|1706171_1706798_+	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AUK78712.1|1706794_1707847_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AUK78713.1|1707896_1708667_+	DNAase	NA	NA	NA	NA	NA
AUK78714.1|1708717_1709554_+	hypothetical protein	NA	NA	NA	NA	NA
AUK78715.1|1709749_1710490_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK78716.1|1710564_1711308_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK78717.1|1711969_1712743_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AUK78718.1|1713880_1715170_+	glutamate dehydrogenase	NA	NA	NA	NA	NA
AUK78719.1|1716780_1718028_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AUK78720.1|1718037_1719747_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AUK78721.1|1719743_1720682_-	CoA ester lyase	NA	NA	NA	NA	NA
AUK78722.1|1720678_1721962_-	C4-dicarboxylate ABC transporter permease	NA	NA	NA	NA	NA
AUK78723.1|1721965_1722448_-	TRAP transporter small permease protein	NA	NA	NA	NA	NA
AUK78724.1|1722448_1723435_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK78725.1|1723607_1724327_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK78726.1|1724443_1725394_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP017924	Bordetella pertussis strain J173, complete genome	4106356	1831580	1903090	4106356	transposase,tRNA	Klosneuvirus(22.22%)	60	NA	NA
AUK78804.1|1831580_1832531_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78805.1|1832655_1833465_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK78806.1|1833713_1834616_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78807.1|1835889_1837107_+	hypothetical protein	NA	NA	NA	NA	NA
AUK78808.1|1837103_1838159_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
AUK78809.1|1838163_1839066_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK78810.1|1839142_1840015_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AUK78811.1|1840145_1840514_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
AUK78812.1|1840571_1841618_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AUK78813.1|1841813_1843070_+	amino acid dehydrogenase	NA	NA	NA	NA	NA
AUK78814.1|1843074_1844412_+	glycerol-3-phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK78815.1|1844561_1845518_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK78816.1|1846975_1847341_+	hypothetical protein	NA	NA	NA	NA	NA
AUK78817.1|1847388_1848963_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK78818.1|1849015_1849960_+	peptide ABC transporter	NA	NA	NA	NA	NA
AUK80758.1|1849887_1850808_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
AUK78819.1|1850800_1852435_+	microcin ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
AUK78820.1|1852431_1853787_+	amidase	NA	NA	NA	NA	NA
AUK78821.1|1854693_1856271_+	hypothetical protein	NA	NA	NA	NA	NA
AUK78822.1|1856274_1857549_+	hypothetical protein	NA	NA	NA	NA	NA
AUK80759.1|1857646_1858021_+	hypothetical protein	NA	NA	NA	NA	NA
AUK78823.1|1859736_1860870_+	general secretion pathway protein	NA	NA	NA	NA	NA
AUK78824.1|1860907_1861513_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
AUK78825.1|1861509_1862328_+	hypothetical protein	NA	NA	NA	NA	NA
AUK78826.1|1862399_1865024_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AUK78827.1|1865010_1865265_+	hypothetical protein	NA	NA	NA	NA	NA
AUK78828.1|1865331_1865913_-	hypothetical protein	NA	NA	NA	NA	NA
AUK78829.1|1866216_1866477_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AUK78830.1|1866642_1867266_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AUK78831.1|1867265_1868039_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AUK78832.1|1868035_1869244_-	class V aminotransferase	NA	NA	NA	NA	NA
AUK78833.1|1869269_1869743_-	hypothetical protein	NA	NA	NA	NA	NA
AUK78834.1|1869816_1870767_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78835.1|1870865_1871768_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78836.1|1871914_1873264_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AUK78837.1|1874029_1874785_+	hypothetical protein	NA	NA	NA	NA	NA
AUK78838.1|1874877_1877760_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AUK78839.1|1878082_1878508_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AUK78840.1|1878535_1879684_+	23S rRNA (adenine(2503)-C(2))-methyltransferase	NA	NA	NA	NA	NA
AUK78841.1|1879680_1880187_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK78842.1|1880202_1881489_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	NA	NA	NA	NA	NA
AUK80760.1|1881538_1882834_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AUK78843.1|1882835_1883474_+	hypothetical protein	NA	NA	NA	NA	NA
AUK80761.1|1883479_1884637_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AUK78844.1|1884663_1886019_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AUK78845.1|1886022_1887093_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AUK78846.1|1887231_1887468_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
AUK78847.1|1887555_1888662_+	GTPase HflX	NA	NA	NA	NA	NA
AUK78848.1|1888627_1889932_+	HflK protein	NA	NA	NA	NA	NA
AUK78849.1|1889950_1890850_+	HflC protein	NA	NA	NA	NA	NA
AUK78850.1|1891033_1892191_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AUK78851.1|1892267_1893563_+	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AUK78852.1|1893676_1894216_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
AUK78853.1|1894493_1894706_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
AUK78854.1|1894725_1896756_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AUK78855.1|1897441_1899724_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
AUK78856.1|1900133_1900433_-	hypothetical protein	NA	NA	NA	NA	NA
AUK78857.1|1900717_1901131_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AUK78858.1|1901090_1902041_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78859.1|1902139_1903090_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP017924	Bordetella pertussis strain J173, complete genome	4106356	1914342	1962641	4106356	transposase	Klosneuvirus(16.67%)	47	NA	NA
AUK78870.1|1914342_1915245_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78871.1|1915241_1916516_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AUK78872.1|1916619_1917813_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AUK78873.1|1917809_1918463_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK78874.1|1918459_1919896_+	dethiobiotin synthase	NA	NA	NA	NA	NA
AUK78875.1|1919883_1920243_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
AUK78876.1|1920328_1920979_+	hypothetical protein	NA	NA	NA	NA	NA
AUK78877.1|1921263_1922166_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78878.1|1922162_1924028_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AUK80765.1|1924285_1925806_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AUK78879.1|1925893_1926544_-	NAD(P)H dehydrogenase	NA	NA	NA	NA	NA
AUK78880.1|1927492_1928788_+	hypothetical protein	NA	NA	NA	NA	NA
AUK78881.1|1928809_1929694_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK78882.1|1929792_1930668_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AUK78883.1|1930657_1931014_-	RNA signal recognition particle	NA	NA	NA	NA	NA
AUK78884.1|1931144_1932119_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK78885.1|1932248_1932428_-	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AUK78886.1|1932570_1933050_+	hypothetical protein	NA	NA	NA	NA	NA
AUK78887.1|1933060_1933897_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK78888.1|1934009_1934381_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK78889.1|1934377_1934929_+	ATPase	NA	NA	NA	NA	NA
AUK78890.1|1934944_1936636_-	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AUK78891.1|1936684_1937365_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK78892.1|1937612_1938077_-	hypothetical protein	NA	NA	NA	NA	NA
AUK78893.1|1938246_1939176_+	hypothetical protein	NA	NA	NA	NA	NA
AUK80766.1|1939188_1939782_-	hypothetical protein	NA	NA	NA	NA	NA
AUK78894.1|1939909_1941727_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AUK78895.1|1941810_1942761_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK80767.1|1942859_1943339_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK78896.1|1943461_1944364_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78897.1|1944382_1944730_-	aldehyde-activating protein	NA	NA	NA	NA	NA
AUK78898.1|1944758_1946198_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AUK78899.1|1946216_1946612_-	hypothetical protein	NA	NA	NA	NA	NA
AUK78900.1|1946786_1947395_+	peptidase S16	NA	NA	NA	NA	NA
AUK78901.1|1947407_1948226_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AUK78902.1|1948177_1949152_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK78903.1|1949180_1950242_-	hypothetical protein	NA	NA	NA	NA	NA
AUK78904.1|1950238_1952455_-	aldehyde oxidase	NA	NA	NA	NA	NA
AUK78905.1|1952468_1952927_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AUK78906.1|1953084_1953429_-	hypothetical protein	NA	NA	NA	NA	NA
AUK78907.1|1953585_1954491_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK80768.1|1954577_1955591_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AUK80769.1|1957570_1958587_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK78908.1|1958729_1960082_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AUK78909.1|1960256_1960553_+	hypothetical protein	NA	NA	NA	NA	NA
AUK78910.1|1960699_1961704_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78911.1|1961690_1962641_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP017924	Bordetella pertussis strain J173, complete genome	4106356	1974137	2038458	4106356	transposase	Vibrio_phage(20.0%)	54	NA	NA
AUK78924.1|1974137_1975088_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78925.1|1975309_1976260_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78926.1|1976358_1977324_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK78927.1|1977461_1978361_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK78928.1|1978888_1980715_+	DUF3604 domain-containing protein	NA	NA	NA	NA	NA
AUK78929.1|1981072_1982443_+	hypothetical protein	NA	NA	NA	NA	NA
AUK78930.1|1982453_1983650_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AUK78931.1|1983722_1985042_+	acyl--CoA ligase	NA	NA	NA	NA	NA
AUK78932.1|1985038_1985914_+	esterase	NA	NA	NA	NA	NA
AUK78933.1|1985944_1987093_-	carnitine dehydratase	NA	NA	NA	NA	NA
AUK78934.1|1987110_1987425_-	2Fe-2S ferredoxin	NA	NA	NA	NA	NA
AUK78935.1|1987446_1988169_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK78936.1|1988168_1988987_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK78937.1|1988991_1989519_-	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AUK78938.1|1989524_1990781_-	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AUK78939.1|1991139_1992279_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK78940.1|1992356_1993229_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK78941.1|1994147_1995050_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78942.1|1995009_1995645_-	hypothetical protein	NA	NA	NA	NA	NA
AUK78943.1|1996004_1997327_-	isocitrate lyase	NA	NA	NA	NA	NA
AUK78944.1|1997645_1998467_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
AUK78945.1|1998402_1998744_-	hypothetical protein	NA	NA	NA	NA	NA
AUK78946.1|1998753_1999722_-	MFS transporter	NA	NA	NA	NA	NA
AUK78947.1|1999891_2000464_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AUK78948.1|2000503_2002333_-	excinuclease ABC subunit C	NA	NA	NA	NA	NA
AUK78949.1|2002295_2003354_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
AUK78950.1|2003391_2003853_-	holo-ACP synthase	NA	NA	NA	NA	NA
AUK78951.1|2003937_2004684_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AUK78952.1|2006174_2009405_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AUK78953.1|2009471_2010803_-	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AUK78954.1|2011055_2011430_-	DNA-binding protein	NA	NA	NA	NA	NA
AUK78955.1|2011532_2012711_-	hypothetical protein	NA	NA	NA	NA	NA
AUK78956.1|2012721_2013312_-	hypothetical protein	NA	NA	NA	NA	NA
AUK80771.1|2013422_2014229_+	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AUK78957.1|2014254_2015049_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AUK78958.1|2016049_2017024_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK78959.1|2017182_2017695_-	superoxide dismutase	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AUK78960.1|2017851_2018823_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK78961.1|2020567_2021374_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK78962.1|2021370_2022672_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AUK78963.1|2022622_2023387_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK78964.1|2023500_2024271_-	spermidine synthase	NA	NA	NA	NA	NA
AUK78965.1|2024355_2025543_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AUK78966.1|2025615_2025990_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AUK78967.1|2026090_2027353_-	glycine/betaine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AUK78968.1|2027349_2028207_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK78969.1|2028379_2029381_-	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK78970.1|2029832_2030735_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK80772.1|2032346_2033498_+	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA	NA
AUK78971.1|2033866_2034103_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
AUK78972.1|2034166_2034334_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
AUK78973.1|2034447_2036253_-	sulfate transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
AUK78974.1|2036506_2037409_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK78975.1|2037555_2038458_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP017924	Bordetella pertussis strain J173, complete genome	4106356	2174090	2228359	4106356	transposase,tRNA	Klosneuvirus(15.38%)	47	NA	NA
AUK79075.1|2174090_2176952_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AUK79076.1|2176954_2177461_+	signal peptidase II	NA	NA	NA	NA	NA
AUK79077.1|2177565_2178774_+	phosphopantothenate synthase	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AUK79078.1|2178775_2179714_-	hypothetical protein	NA	NA	NA	NA	NA
AUK79079.1|2179875_2180349_+	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AUK79080.1|2180345_2181296_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK79081.1|2181406_2181847_-	hypothetical protein	NA	NA	NA	NA	NA
AUK79082.1|2181975_2183205_-	lytic transglycosylase	NA	NA	NA	NA	NA
AUK79083.1|2183243_2184065_-	hypothetical protein	NA	NA	NA	NA	NA
AUK79084.1|2184118_2185270_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK79085.1|2185361_2185832_-	hypothetical protein	NA	NA	NA	NA	NA
AUK79086.1|2188400_2190950_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AUK79087.1|2191020_2193594_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AUK79088.1|2193859_2194060_+	general stress protein CsbD	NA	NA	NA	NA	NA
AUK79089.1|2194091_2194253_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AUK79090.1|2194310_2194649_+	phospholipid-binding protein	NA	NA	NA	NA	NA
AUK79091.1|2194797_2195700_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK79092.1|2196522_2197191_+	arylesterase	NA	NA	NA	NA	NA
AUK80781.1|2197172_2199128_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AUK79093.1|2199370_2200120_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AUK79094.1|2200132_2200996_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AUK79095.1|2200999_2202415_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AUK79096.1|2202548_2203277_-	glutathione peroxidase	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AUK79097.1|2203415_2203616_-	heavy metal transporter	NA	NA	NA	NA	NA
AUK79098.1|2203791_2204190_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AUK79099.1|2204213_2205614_-	23S rRNA (uracil(1939)-C(5))-methyltransferase	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AUK79100.1|2205732_2206485_-	hypothetical protein	NA	NA	NA	NA	NA
AUK79101.1|2206773_2207373_-	hypothetical protein	NA	NA	NA	NA	NA
AUK79102.1|2207477_2208257_-	3'-5' exonuclease	NA	NA	NA	NA	NA
AUK79103.1|2208253_2209138_-	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AUK79104.1|2209155_2209935_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
AUK79105.1|2209919_2210678_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AUK80782.1|2210815_2211451_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AUK80783.1|2211718_2212735_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK79106.1|2212832_2213873_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AUK79107.1|2214007_2215300_+	guanine permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AUK79108.1|2216659_2217043_+	thiol reductase thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AUK79109.1|2217060_2217648_-	thymidylate synthase	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AUK79110.1|2217685_2218588_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK79111.1|2218734_2219685_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK79112.1|2219783_2220344_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AUK79113.1|2220340_2220886_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUK79114.1|2221158_2222109_+	silent information regulator protein Sir2	NA	NA	NA	NA	NA
AUK79115.1|2222149_2223490_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AUK79116.1|2223598_2224603_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK79117.1|2224709_2227310_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AUK79118.1|2227456_2228359_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP017924	Bordetella pertussis strain J173, complete genome	4106356	2576559	2643011	4106356	transposase	uncultured_Caudovirales_phage(40.0%)	58	NA	NA
AUK79402.1|2576559_2577462_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK79403.1|2577477_2577690_+	hypothetical protein	NA	NA	NA	NA	NA
AUK79404.1|2577831_2578404_+	flagellar basal body protein FliL	NA	NA	NA	NA	NA
AUK79405.1|2578406_2579417_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AUK79406.1|2579409_2579910_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AUK79407.1|2579920_2580262_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AUK80813.1|2580330_2581065_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AUK79408.1|2581081_2581351_+	EscS/YscS/HrcS family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AUK79409.1|2581373_2582162_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AUK80814.1|2582208_2583225_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK79410.1|2583441_2584884_-	chemotaxis protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AUK79411.1|2585062_2586682_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AUK79412.1|2586802_2588623_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AUK79413.1|2588701_2590234_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AUK79414.1|2590267_2591914_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AUK79415.1|2591983_2593006_-	flagellar rod assembly protein/muramidase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AUK79416.1|2593023_2594157_-	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AUK79417.1|2594159_2594849_-	flagellar basal body L-ring protein	NA	NA	NA	NA	NA
AUK79418.1|2594848_2595634_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AUK79419.1|2595677_2596442_-	flagellar biosynthesis protein FlgF	NA	NA	NA	NA	NA
AUK79420.1|2596480_2597902_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AUK79421.1|2597967_2598672_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AUK79422.1|2598719_2599139_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AUK79423.1|2599151_2599559_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AUK80815.1|2599742_2600453_+	flagella basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AUK79424.1|2600579_2600870_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AUK79425.1|2600887_2601370_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AUK79426.1|2605875_2607030_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
AUK80816.1|2607335_2608352_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK79427.1|2608598_2609387_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK79428.1|2609453_2610134_+	cysteine ABC transporter permease	NA	NA	NA	NA	NA
AUK79429.1|2610130_2610901_+	ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AUK79430.1|2610999_2611950_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK79431.1|2612005_2612923_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AUK79432.1|2612933_2614112_-	mandelate racemase	NA	NA	NA	NA	NA
AUK79433.1|2614131_2615127_-	hypothetical protein	NA	NA	NA	NA	NA
AUK79434.1|2616715_2617324_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AUK79435.1|2617311_2618352_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUK79436.1|2618369_2619332_-	hypothetical protein	NA	NA	NA	NA	NA
AUK79437.1|2619328_2620522_-	CoA transferase	NA	NA	NA	NA	NA
AUK79438.1|2620518_2621316_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AUK79439.1|2621341_2622328_-	hypothetical protein	NA	NA	NA	NA	NA
AUK79440.1|2622346_2624386_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AUK80817.1|2624587_2625268_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK79441.1|2625281_2626193_-	CoA ester lyase	NA	NA	NA	NA	NA
AUK79442.1|2626189_2626768_-	NADPH-dependent FMN reductase	NA	NA	NA	NA	NA
AUK79443.1|2626906_2627812_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK79444.1|2627819_2631239_+	nuclease	NA	NA	NA	NA	NA
AUK79445.1|2631226_2633827_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK79446.1|2634782_2635415_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AUK79447.1|2635808_2636567_+	hypothetical protein	NA	NA	NA	NA	NA
AUK79448.1|2636563_2637766_+	cardiolipin synthase B	NA	NA	NA	NA	NA
AUK79449.1|2637762_2637963_+	hypothetical protein	NA	NA	NA	NA	NA
AUK79450.1|2637953_2638904_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK79451.1|2639811_2640957_+	hypothetical protein	NA	NA	NA	NA	NA
AUK79452.1|2640943_2641699_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK79453.1|2641815_2641995_+	hypothetical protein	NA	NA	NA	NA	NA
AUK79454.1|2642060_2643011_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP017924	Bordetella pertussis strain J173, complete genome	4106356	2671174	2708538	4106356	transposase	Planktothrix_phage(33.33%)	40	NA	NA
AUK79473.1|2671174_2672077_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK79474.1|2672223_2673126_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK79475.1|2673218_2673758_+	peroxiredoxin	NA	NA	NA	NA	NA
AUK79476.1|2673864_2674209_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
AUK79477.1|2674266_2675715_-	carnitine dehydratase	NA	NA	NA	NA	NA
AUK80820.1|2675902_2676229_-	hypothetical protein	NA	NA	NA	NA	NA
AUK79478.1|2677865_2679044_+	hypothetical protein	NA	NA	NA	NA	NA
AUK79479.1|2679126_2679627_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
AUK79480.1|2679736_2680438_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
AUK79481.1|2680449_2680914_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK80821.1|2680928_2681204_+	biotin--protein ligase	NA	NA	NA	NA	NA
AUK79482.1|2681200_2681977_+	lipoate--protein ligase	NA	NA	NA	NA	NA
AUK79483.1|2682005_2682833_+	hypothetical protein	NA	NA	NA	NA	NA
AUK80822.1|2682958_2683429_+	hypothetical protein	NA	NA	NA	NA	NA
AUK79484.1|2683555_2684449_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
AUK79485.1|2684496_2685678_+	alpha-hydroxy-acid oxidizing enzyme	NA	NA	NA	NA	NA
AUK79486.1|2685690_2686506_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK79487.1|2686639_2687167_-	hypothetical protein	NA	NA	NA	NA	NA
AUK80823.1|2687163_2687661_-	hypothetical protein	NA	NA	NA	NA	NA
AUK79488.1|2687808_2688186_+	hypothetical protein	NA	NA	NA	NA	NA
AUK79489.1|2688143_2688428_+	hypothetical protein	NA	NA	NA	NA	NA
AUK79490.1|2688407_2689310_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK80824.1|2689456_2690068_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK79491.1|2690302_2691430_+	leucine ABC transporter subunit substrate-binding protein LivK	NA	NA	NA	NA	NA
AUK79492.1|2691540_2692629_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
AUK79493.1|2692681_2693533_-	glycerol-3-phosphate transporter	NA	NA	NA	NA	NA
AUK79494.1|2693552_2694434_-	glycerol-3-phosphate transporter permease	NA	NA	NA	NA	NA
AUK80825.1|2694610_2695924_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK79495.1|2696134_2696968_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
AUK79496.1|2696964_2697546_+	hypothetical protein	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
AUK79497.1|2697899_2698850_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK79498.1|2698865_2699981_+	leucine ABC transporter subunit substrate-binding protein LivK	NA	NA	NA	NA	NA
AUK79499.1|2700083_2701010_+	branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
AUK79500.1|2701009_2702248_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
AUK79501.1|2702244_2703012_+	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
AUK79502.1|2703012_2703714_+	branched-chain amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
AUK80826.1|2703795_2704242_-	glutamate racemase	NA	NA	NA	NA	NA
AUK79503.1|2705131_2705770_+	glutathione S-transferase	NA	NA	NA	NA	NA
AUK79504.1|2706538_2707489_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK79505.1|2707587_2708538_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP017924	Bordetella pertussis strain J173, complete genome	4106356	2807665	2862182	4106356	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	49	NA	NA
AUK79587.1|2807665_2808568_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK79588.1|2808944_2809550_+	fimbrial protein	NA	NA	NA	NA	NA
AUK79589.1|2809603_2810917_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AUK79590.1|2810991_2811462_-	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AUK79591.1|2811461_2812250_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AUK79592.1|2812260_2813913_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AUK79593.1|2814000_2814903_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK80834.1|2816112_2816619_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AUK79594.1|2816615_2817380_-	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AUK79595.1|2817395_2817680_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AUK79596.1|2817744_2818734_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AUK79597.1|2818905_2819835_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AUK79598.1|2819806_2820493_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AUK79599.1|2820526_2821072_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AUK79600.1|2821116_2822382_+	peptidase M48	NA	NA	NA	NA	NA
AUK79601.1|2822378_2823281_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
AUK79602.1|2824462_2825407_-	peptide ABC transporter	NA	NA	NA	NA	NA
AUK79603.1|2825501_2827019_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK79604.1|2827060_2828689_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AUK79605.1|2828796_2829678_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK79606.1|2829938_2830166_+	hypothetical protein	NA	NA	NA	NA	NA
AUK79607.1|2832790_2833165_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AUK79608.1|2833189_2833528_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK79609.1|2833571_2835206_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AUK79610.1|2835244_2836591_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AUK80835.1|2836698_2838120_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AUK79611.1|2838189_2838774_-	nitroreductase	NA	NA	NA	NA	NA
AUK79612.1|2838876_2839827_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK79613.1|2839961_2841068_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK79614.1|2841078_2842176_+	cyclic pyranopterin phosphate synthase	NA	NA	NA	NA	NA
AUK79615.1|2842320_2843526_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AUK79616.1|2843532_2844054_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AUK80836.1|2844050_2844533_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AUK79617.1|2844538_2844790_-	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA	NA
AUK79618.1|2844770_2845256_-	molybdenum cofactor biosynthesis protein C	NA	NA	NA	NA	NA
AUK79619.1|2845391_2848853_+	hypothetical protein	NA	NA	NA	NA	NA
AUK79620.1|2848870_2849755_+	carboxymethylenebutenolidase	NA	NA	NA	NA	NA
AUK79621.1|2849764_2850196_-	hypothetical protein	NA	NA	NA	NA	NA
AUK80837.1|2850442_2850946_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AUK79622.1|2851023_2852424_+	MFS transporter	NA	NA	NA	NA	NA
AUK79623.1|2852498_2853374_-	hypothetical protein	NA	NA	NA	NA	NA
AUK80838.1|2853370_2854378_-	biotin synthase BioB	NA	NA	NA	NA	NA
AUK79624.1|2854845_2855151_+	hypothetical protein	NA	NA	NA	NA	NA
AUK79625.1|2855241_2855832_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK80839.1|2856022_2857039_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK79626.1|2857230_2859567_-	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AUK79627.1|2859649_2860084_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AUK79628.1|2860230_2861133_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK79629.1|2861231_2862182_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP017924	Bordetella pertussis strain J173, complete genome	4106356	2870207	2926993	4106356	transposase,protease	uncultured_Mediterranean_phage(28.57%)	41	NA	NA
AUK79636.1|2870207_2871110_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK79637.1|2872864_2873131_-	hypothetical protein	NA	NA	NA	NA	NA
AUK79638.1|2873838_2874177_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK79639.1|2875505_2877785_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK79640.1|2878730_2879333_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK79641.1|2879429_2880719_+	MFS transporter	NA	NA	NA	NA	NA
AUK79642.1|2880776_2881508_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AUK79643.1|2881504_2882308_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AUK79644.1|2882304_2883393_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUK79645.1|2883389_2884319_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK79646.1|2884467_2885613_-	branched chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK79647.1|2885634_2886537_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK79648.1|2886915_2890737_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AUK79649.1|2890893_2891562_-	hypothetical protein	NA	NA	NA	NA	NA
AUK79650.1|2891566_2893240_-	paraquat-inducible protein B	NA	NA	NA	NA	NA
AUK79651.1|2893258_2894578_-	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AUK79652.1|2894582_2896898_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
AUK80841.1|2896953_2899122_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AUK80842.1|2899118_2903684_-	alpha-2-macroglobulin	NA	NA	NA	NA	NA
AUK79653.1|2904397_2904712_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AUK79654.1|2904939_2905185_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AUK79655.1|2905306_2905798_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	4.8e-14
AUK79656.1|2905897_2907103_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AUK79657.1|2907218_2908616_-	chloride channel protein EriC	NA	NA	NA	NA	NA
AUK79658.1|2908732_2909311_-	superoxide dismutase	NA	NA	NA	NA	NA
AUK79659.1|2909383_2910775_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AUK79660.1|2910942_2911893_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK79661.1|2912173_2912794_+	flagellar motor protein MotA	NA	NA	NA	NA	NA
AUK79662.1|2912790_2913204_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AUK79663.1|2913200_2914244_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AUK79664.1|2914299_2914488_+	hypothetical protein	NA	NA	NA	NA	NA
AUK79665.1|2914497_2915262_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AUK79666.1|2915352_2916009_+	adenylate kinase	NA	NA	NA	NA	NA
AUK79667.1|2916100_2916859_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK79668.1|2916884_2918486_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AUK79669.1|2918686_2919691_+	iron dicitrate transport regulator FecR	NA	NA	NA	NA	NA
AUK79670.1|2919791_2920055_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AUK79671.1|2920172_2920949_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AUK79672.1|2921539_2922490_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK79673.1|2924873_2925986_-	malate dehydrogenase	NA	NA	NA	NA	NA
AUK79674.1|2926042_2926993_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP017924	Bordetella pertussis strain J173, complete genome	4106356	2949372	3001021	4106356	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
AUK79697.1|2949372_2950236_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK79698.1|2950431_2951904_-	magnesium transporter	NA	NA	NA	NA	NA
AUK79699.1|2951914_2952325_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AUK79700.1|2952388_2953435_-	hypothetical protein	NA	NA	NA	NA	NA
AUK79701.1|2953541_2954420_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK79702.1|2954433_2955630_-	amidohydrolase	NA	NA	NA	NA	NA
AUK79703.1|2955691_2957383_+	long-chain fatty acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.4e-33
AUK79704.1|2958449_2959346_-	inositol monophosphatase	NA	NA	NA	NA	NA
AUK79705.1|2961623_2963849_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AUK79706.1|2964013_2965102_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AUK79707.1|2965058_2965712_+	DL-methionine transporter permease subunit	NA	NA	NA	NA	NA
AUK79708.1|2965759_2966557_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK79709.1|2967136_2968039_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK79710.1|2968119_2969268_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AUK79711.1|2969324_2970275_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK79712.1|2970373_2970679_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AUK79713.1|2970707_2971142_-	hypothetical protein	NA	NA	NA	NA	NA
AUK79714.1|2971143_2972388_-	hypothetical protein	NA	NA	NA	NA	NA
AUK79715.1|2972384_2973095_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK80844.1|2973109_2974021_-	hypothetical protein	NA	NA	NA	NA	NA
AUK79716.1|2974383_2974788_+	hypothetical protein	NA	NA	NA	NA	NA
AUK79717.1|2974784_2975243_+	hypothetical protein	NA	NA	NA	NA	NA
AUK79718.1|2975249_2976158_+	hypothetical protein	NA	NA	NA	NA	NA
AUK80845.1|2976154_2977021_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK79719.1|2977007_2977835_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AUK79720.1|2977845_2978973_+	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AUK79721.1|2981330_2982593_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK79722.1|2982599_2983352_+	DNA-binding protein	NA	NA	NA	NA	NA
AUK79723.1|2983403_2983589_-	hypothetical protein	NA	NA	NA	NA	NA
AUK79724.1|2983864_2984329_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AUK79725.1|2984408_2985020_+	3-methyladenine DNA glycosylase	NA	NA	NA	NA	NA
AUK79726.1|2985164_2987273_+	hypothetical protein	NA	NA	NA	NA	NA
AUK79727.1|2987269_2988172_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK79728.1|2988323_2988944_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK80846.1|2989047_2989788_+	oxidoreductase	NA	NA	NA	NA	NA
AUK79729.1|2990922_2992047_-	hypothetical protein	NA	NA	NA	NA	NA
AUK79730.1|2992092_2992461_-	hypothetical protein	NA	NA	NA	NA	NA
AUK79731.1|2992702_2993605_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK79732.1|2994688_2995231_-	hypothetical protein	NA	NA	NA	NA	NA
AUK79733.1|2995664_2996567_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK79734.1|2996563_2997472_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK79735.1|2997598_2998435_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AUK79736.1|2998947_3000057_+	porin	NA	NA	NA	NA	NA
AUK79737.1|3000118_3001021_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP017924	Bordetella pertussis strain J173, complete genome	4106356	3234581	3282199	4106356	transposase,tRNA	Erwinia_phage(10.0%)	46	NA	NA
AUK79922.1|3234581_3235532_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK79923.1|3235976_3236288_-	cell division protein ZapA	NA	NA	NA	NA	NA
AUK79924.1|3236287_3236818_-	hypothetical protein	NA	NA	NA	NA	NA
AUK79925.1|3236980_3237931_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK79926.1|3238220_3238685_+	tricarboxylate transporter	NA	NA	NA	NA	NA
AUK79927.1|3238699_3240205_+	hypothetical protein	NA	NA	NA	NA	NA
AUK79928.1|3240461_3242066_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AUK79929.1|3242121_3243027_+	oxidoreductase	NA	NA	NA	NA	NA
AUK79930.1|3243467_3244370_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK79931.1|3244516_3245419_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK79932.1|3245548_3246130_-	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
AUK80859.1|3246554_3246860_+	RND transporter	NA	NA	NA	NA	NA
AUK79933.1|3246873_3248208_-	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AUK79934.1|3248229_3248769_-	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AUK79935.1|3248916_3249381_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AUK79936.1|3249523_3250639_-	cobalamin biosynthesis protein CobW	NA	NA	NA	NA	NA
AUK79937.1|3250915_3251419_-	transcriptional repressor	NA	NA	NA	NA	NA
AUK79938.1|3251556_3251757_+	hypothetical protein	NA	NA	NA	NA	NA
AUK79939.1|3251747_3252470_+	ABC transporter	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AUK79940.1|3252466_3253363_+	zinc ABC transporter permease	NA	NA	NA	NA	NA
AUK79941.1|3253359_3254295_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK79942.1|3254255_3254924_+	hypothetical protein	NA	NA	NA	NA	NA
AUK79943.1|3254914_3255883_+	nickel transporter	NA	NA	NA	NA	NA
AUK79944.1|3255931_3258073_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AUK79945.1|3258085_3259066_-	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
AUK79946.1|3259080_3259773_-	hypothetical protein	NA	NA	NA	NA	NA
AUK79947.1|3259799_3260711_-	diaminopimelate epimerase	NA	NA	NA	NA	NA
AUK79948.1|3260753_3261644_-	acyltransferase	NA	NA	NA	NA	NA
AUK79949.1|3261640_3262495_-	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA	NA
AUK79950.1|3262778_3263942_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
AUK79951.1|3264052_3264304_+	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AUK79952.1|3264383_3265424_+	alpha-mannosyltransferase	NA	NA	NA	NA	NA
AUK79953.1|3265703_3267122_+	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AUK79954.1|3267192_3267528_+	hypothetical protein	NA	NA	NA	NA	NA
AUK79955.1|3267527_3268370_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AUK79956.1|3268516_3269419_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK79957.1|3269483_3270455_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK79958.1|3270518_3271538_-	acetylpolyamine amidohydrolase	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
AUK79959.1|3271539_3272880_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK79960.1|3273190_3273871_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AUK80860.1|3273946_3276010_+	lytic transglycosylase	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.3e-14
AUK79961.1|3276006_3277101_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
AUK79962.1|3277115_3278306_-	hypothetical protein	NA	NA	NA	NA	NA
AUK79963.1|3278394_3280083_-	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
AUK79964.1|3280357_3281110_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
AUK79965.1|3281248_3282199_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP017924	Bordetella pertussis strain J173, complete genome	4106356	3292126	3332076	4106356	transposase,integrase,tRNA,protease	Klosneuvirus(33.33%)	27	3314923:3314941	3334811:3334829
AUK79975.1|3292126_3293077_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK79976.1|3293604_3294378_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK79977.1|3294510_3295521_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUK79978.1|3295672_3297328_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AUK79979.1|3297382_3297724_-	cupin	NA	NA	NA	NA	NA
AUK79980.1|3297737_3299177_-	amine oxidase	NA	NA	NA	NA	NA
AUK79981.1|3299309_3300125_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AUK79982.1|3300366_3301269_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK79983.1|3302662_3303604_+	hypothetical protein	NA	NA	NA	NA	NA
AUK79984.1|3303830_3304571_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK79985.1|3304656_3305559_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK79986.1|3307048_3308620_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK79987.1|3308952_3310806_+	hypothetical protein	NA	NA	NA	NA	NA
AUK79988.1|3310850_3313415_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
3314923:3314941	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AUK79989.1|3315567_3315852_-	hypothetical protein	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
AUK79990.1|3315933_3316845_-	hypothetical protein	NA	NA	NA	NA	NA
AUK79991.1|3316914_3317160_+	hypothetical protein	NA	NA	NA	NA	NA
AUK79992.1|3317388_3317646_-	hypothetical protein	NA	NA	NA	NA	NA
AUK79993.1|3318160_3319063_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK79994.1|3319294_3320506_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AUK79995.1|3320521_3323473_-	site-specific DNA-methyltransferase	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AUK80863.1|3323474_3326231_-	restriction endonuclease	NA	NA	NA	NA	NA
AUK79996.1|3326741_3327788_-	cell filamentation protein Fic	NA	NA	NA	NA	NA
AUK79997.1|3328129_3329257_-|integrase	integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AUK79998.1|3329536_3330628_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AUK79999.1|3330700_3331483_-|protease	CAAX protease	protease	NA	NA	NA	NA
AUK80000.1|3331479_3332076_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
3334811:3334829	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
>prophage 24
CP017924	Bordetella pertussis strain J173, complete genome	4106356	3400874	3464706	4106356	transposase,tRNA	Staphylococcus_phage(12.5%)	49	NA	NA
AUK80052.1|3400874_3401777_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK80053.1|3402591_3403686_-	CoA transferase	NA	NA	NA	NA	NA
AUK80054.1|3403678_3405013_-	CoA ligase	NA	NA	NA	NA	NA
AUK80055.1|3404966_3405650_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK80056.1|3405675_3406839_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK80057.1|3406835_3407837_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK80058.1|3407836_3408709_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK80059.1|3408705_3409455_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AUK80060.1|3409451_3410243_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AUK80061.1|3410239_3411379_-	ABC transporter	NA	NA	NA	NA	NA
AUK80062.1|3411654_3412440_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK80063.1|3412473_3413256_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK80064.1|3413259_3413649_+	DNA-binding protein	NA	NA	NA	NA	NA
AUK80065.1|3414788_3415652_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK80066.1|3415687_3416776_+	hypothetical protein	NA	NA	NA	NA	NA
AUK80067.1|3418075_3421054_+	hypothetical protein	NA	NA	NA	NA	NA
AUK80068.1|3421980_3422859_+	fatty acid desaturase	NA	NA	NA	NA	NA
AUK80069.1|3422894_3423227_+	hypothetical protein	NA	NA	NA	NA	NA
AUK80070.1|3423205_3424726_+	hypothetical protein	NA	NA	NA	NA	NA
AUK80071.1|3424807_3425758_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK80072.1|3425754_3426222_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AUK80073.1|3426264_3427035_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUK80074.1|3427055_3427856_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AUK80075.1|3427866_3429276_+	lytic transglycosylase	NA	NA	NA	NA	NA
AUK80076.1|3429370_3430156_+	enoyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA	NA
AUK80867.1|3430395_3431412_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK80077.1|3431519_3431912_-	osmotically inducible protein OsmC	NA	NA	NA	NA	NA
AUK80078.1|3432049_3432730_+	hypothetical protein	NA	NA	NA	NA	NA
AUK80079.1|3432734_3433706_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK80080.1|3433801_3434704_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK80081.1|3436256_3436958_+	two-component system response regulator OmpR	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
AUK80082.1|3436957_3438382_+	ATPase	NA	NA	NA	NA	NA
AUK80083.1|3439451_3440792_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AUK80084.1|3440907_3442671_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AUK80085.1|3442782_3443661_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AUK80086.1|3443773_3444589_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AUK80087.1|3444592_3444844_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
AUK80868.1|3444928_3445945_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK80088.1|3446275_3446497_-	hypothetical protein	NA	NA	NA	NA	NA
AUK80869.1|3448857_3449724_-	EamA family transporter	NA	NA	NA	NA	NA
AUK80089.1|3450272_3451481_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK80090.1|3451560_3453132_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK80091.1|3453249_3454185_-	glycosyl transferase	NA	NA	NA	NA	NA
AUK80092.1|3454373_3455318_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AUK80093.1|3455386_3455557_-	hypothetical protein	NA	NA	NA	NA	NA
AUK80094.1|3455885_3461603_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AUK80095.1|3461608_3462736_+	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AUK80096.1|3462791_3463418_+	aminotransferase	NA	NA	NA	NA	NA
AUK80870.1|3463689_3464706_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP017924	Bordetella pertussis strain J173, complete genome	4106356	3469120	3586965	4106356	transposase,holin,tRNA	Acinetobacter_phage(22.22%)	107	NA	NA
AUK80100.1|3469120_3469993_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AUK80101.1|3470342_3471482_+	MFS transporter	NA	NA	NA	NA	NA
AUK80102.1|3471478_3472138_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AUK80103.1|3472209_3472842_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AUK80104.1|3472871_3473390_+	flavin reductase	NA	NA	NA	NA	NA
AUK80105.1|3473400_3474510_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AUK80106.1|3474556_3475411_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AUK80107.1|3475412_3476315_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK80108.1|3477537_3478488_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK80109.1|3478584_3479718_-	hypothetical protein	NA	NA	NA	NA	NA
AUK80110.1|3479754_3480003_-	hypothetical protein	NA	NA	NA	NA	NA
AUK80111.1|3480242_3481232_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK80112.1|3481407_3482196_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AUK80113.1|3482192_3483224_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AUK80114.1|3483242_3483806_-	anthranilate/aminodeoxychorismate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AUK80115.1|3483861_3485382_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AUK80116.1|3485645_3486350_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AUK80117.1|3486357_3487086_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AUK80118.1|3487200_3487575_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AUK80119.1|3487617_3488907_+	hypothetical protein	NA	NA	NA	NA	NA
AUK80120.1|3488903_3490073_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AUK80121.1|3490099_3490909_+	disulfide bond formation protein DsbC	NA	NA	NA	NA	NA
AUK80122.1|3490968_3491904_+	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AUK80123.1|3491916_3492867_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK80124.1|3492965_3493928_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AUK80125.1|3493959_3494319_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AUK80126.1|3494443_3495346_+	oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AUK80872.1|3495347_3497114_-	peptidase M61	NA	NA	NA	NA	NA
AUK80127.1|3497154_3497931_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK80128.1|3499254_3500157_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK80129.1|3500371_3500785_+	hypothetical protein	NA	NA	NA	NA	NA
AUK80873.1|3501056_3501377_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK80130.1|3501449_3502331_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
AUK80131.1|3502447_3502690_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
AUK80132.1|3502827_3503298_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
AUK80133.1|3503310_3503850_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
AUK80134.1|3503884_3505426_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
AUK80135.1|3505524_3506430_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
AUK80136.1|3506472_3507873_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
AUK80137.1|3507882_3508305_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
AUK80874.1|3508487_3509372_+	hypothetical protein	NA	NA	NA	NA	NA
AUK80138.1|3509447_3510524_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
AUK80139.1|3510830_3512933_+	primosomal protein N'	NA	NA	NA	NA	NA
AUK80140.1|3512975_3515045_+	ATP-dependent DNA helicase Rep	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
AUK80141.1|3515143_3516094_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK80142.1|3516222_3517356_-	peptidase	NA	NA	NA	NA	NA
AUK80143.1|3517399_3518305_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK80144.1|3520004_3520925_-	peptide ABC transporter permease	NA	NA	NA	NA	NA
AUK80145.1|3520932_3521910_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK80146.1|3521968_3522928_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AUK80147.1|3524977_3525214_-	hypothetical protein	NA	NA	NA	NA	NA
AUK80148.1|3525340_3526204_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AUK80149.1|3526292_3527114_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK80150.1|3527193_3527931_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK80151.1|3527927_3528920_-	2-nitropropane dioxygenase	NA	NA	NA	NA	NA
AUK80875.1|3529072_3529696_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK80152.1|3529740_3530889_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK80153.1|3533260_3534163_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK80154.1|3534503_3535454_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK80155.1|3535600_3536503_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK80156.1|3536799_3537297_+	hypothetical protein	NA	NA	NA	NA	NA
AUK80157.1|3537339_3539115_+	hypothetical protein	NA	NA	NA	NA	NA
AUK80158.1|3539122_3539989_+	copper resistance protein	NA	NA	NA	NA	NA
AUK80876.1|3539995_3540721_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK80159.1|3540890_3541121_+	hypothetical protein	NA	NA	NA	NA	NA
AUK80160.1|3541158_3541380_+	hypothetical protein	NA	NA	NA	NA	NA
AUK80161.1|3541899_3542670_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK80162.1|3542983_3543574_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AUK80163.1|3543607_3544936_-	amidase	NA	NA	NA	NA	NA
AUK80164.1|3545010_3546156_-	transporter	NA	NA	NA	NA	NA
AUK80165.1|3546267_3547266_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK80166.1|3547228_3547663_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AUK80167.1|3549179_3550064_+	EamA family transporter	NA	NA	NA	NA	NA
AUK80168.1|3550060_3551266_-	cardiolipin synthase B	NA	NA	NA	NA	NA
AUK80169.1|3551262_3552123_-	endonuclease	NA	NA	NA	NA	NA
AUK80170.1|3552235_3554026_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AUK80877.1|3554066_3554711_-	hypothetical protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
AUK80171.1|3554732_3555041_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AUK80878.1|3555206_3556493_-	hypothetical protein	NA	NA	NA	NA	NA
AUK80172.1|3556619_3557879_-|holin	choline dehydrogenase	holin	A0A2I2L3D3	Orpheovirus	27.6	6.1e-13
AUK80173.1|3557926_3558877_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK80174.1|3560828_3562043_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AUK80175.1|3562148_3563138_+	D-arabinose 5-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AUK80176.1|3563134_3563743_+	phenylphosphate carboxylase subunit delta	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AUK80177.1|3563755_3564385_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AUK80178.1|3564381_3565002_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AUK80179.1|3565033_3565825_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AUK80180.1|3566178_3566400_+	ribosomal subunit interface protein	NA	NA	NA	NA	NA
AUK80181.1|3566676_3567132_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AUK80182.1|3567150_3568077_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AUK80183.1|3568130_3569417_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AUK80184.1|3570347_3571220_+	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AUK80185.1|3571216_3572167_+	hypothetical protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AUK80186.1|3572313_3573216_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK80879.1|3573320_3573551_-	hypothetical protein	NA	NA	NA	NA	NA
AUK80880.1|3573677_3574067_-	hypothetical protein	NA	NA	NA	NA	NA
AUK80187.1|3574083_3576465_-	dehydrogenase	NA	NA	NA	NA	NA
AUK80188.1|3576457_3576967_-	4-hydroxybenzoyl-CoA reductase subunit gamma	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	8.8e-19
AUK80189.1|3577849_3578845_-	4,5-dihydroxyphthalate decarboxylase	NA	NA	NA	NA	NA
AUK80190.1|3578863_3579856_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK80191.1|3580096_3580657_-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	NA	NA	NA	NA	NA
AUK80192.1|3580661_3580988_-	monothiol glutaredoxin, Grx4 family	NA	NA	NA	NA	NA
AUK80193.1|3581024_3581837_-	protein-(glutamine-N5) methyltransferase, release factor-specific	NA	NA	NA	NA	NA
AUK80194.1|3581847_3582930_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
AUK80195.1|3583016_3584291_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
AUK80196.1|3585013_3585964_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK80197.1|3586062_3586965_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
