The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	0	61595	4102575	tRNA,transposase	Natrialba_phage(12.5%)	55	NA	NA
AUK73672.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AUK73673.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
AUK73674.1|2605_3403_+	chromosome partitioning protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AUK73675.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK73676.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AUK73677.1|5124_5910_+	L-asparaginase	NA	NA	NA	NA	NA
AUK73678.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
AUK73679.1|6721_7912_+	translation elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AUK73680.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AUK73681.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AUK73682.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AUK73683.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AUK73684.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AUK73685.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AUK73686.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AUK73687.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AUK77031.1|20126_20531_-	hypothetical protein	NA	NA	NA	NA	NA
AUK73688.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AUK73689.1|21943_22894_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73690.1|25401_26508_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AUK77032.1|27624_28335_+	hypothetical protein	NA	NA	NA	NA	NA
AUK73691.1|28331_29234_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73692.1|29363_29663_-	hypothetical protein	NA	NA	NA	NA	NA
AUK73693.1|29723_30158_-	hypothetical protein	NA	NA	NA	NA	NA
AUK73694.1|30190_31408_-	thiolase	NA	NA	NA	NA	NA
AUK73695.1|31413_31911_-	dehydratase	NA	NA	NA	NA	NA
AUK73696.1|32118_33054_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK77033.1|33263_34055_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK73697.1|34097_35519_+	2-methylcitrate dehydratase	NA	NA	NA	NA	NA
AUK73698.1|35722_36625_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73699.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
AUK73700.1|38061_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AUK73701.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AUK73702.1|41109_41649_+	D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AUK73703.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AUK73704.1|42367_43261_+	hypothetical protein	NA	NA	NA	NA	NA
AUK73705.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AUK73706.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AUK73707.1|44395_44575_-	hypothetical protein	NA	NA	NA	NA	NA
AUK73708.1|44712_45663_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77034.1|46273_46798_+	hypothetical protein	NA	NA	NA	NA	NA
AUK73709.1|46769_47006_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AUK73710.1|47133_48027_+	hypothetical protein	NA	NA	NA	NA	NA
AUK73711.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AUK73712.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AUK73713.1|51238_52141_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73714.1|52183_53440_+	muropeptide transporter AmpG	NA	NA	NA	NA	NA
AUK73715.1|54671_55406_-	glutamate racemase	NA	NA	NA	NA	NA
AUK73716.1|55411_56002_-	arginine transporter ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AUK73717.1|56026_56716_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK73718.1|56712_57474_-	glutamate ABC transporter permease	NA	NA	NA	NA	NA
AUK73719.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK73720.1|58546_59497_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73721.1|59595_60546_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73722.1|60644_61595_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	255277	326265	4102575	transposase	uncultured_Mediterranean_phage(15.38%)	55	NA	NA
AUK77046.1|255277_256294_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK73910.1|256575_257064_+	ADP-heptose synthase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
AUK73911.1|257084_258044_-	hypothetical protein	NA	NA	NA	NA	NA
AUK73912.1|258044_258380_-	hypothetical protein	NA	NA	NA	NA	NA
AUK73913.1|258407_259088_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
AUK73914.1|259149_260001_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AUK73915.1|259997_260795_-	thiazole synthase	NA	NA	NA	NA	NA
AUK73916.1|260898_261792_-	cobalamin-binding protein	NA	NA	NA	NA	NA
AUK73917.1|261803_263693_-	hypothetical protein	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
AUK73918.1|264029_267803_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
AUK73919.1|267799_268702_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73920.1|269058_269751_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
AUK73921.1|270124_270625_-	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA	NA
AUK73922.1|270731_271652_+	bestrophin	NA	NA	NA	NA	NA
AUK73923.1|271668_272145_-	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AUK77047.1|272247_274089_+	acetolactate synthase, large subunit, biosynthetic type	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
AUK73924.1|274144_274903_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK73925.1|274930_276364_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AUK73926.1|276437_277217_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
AUK73927.1|277229_278063_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK73928.1|278071_278842_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
AUK73929.1|278841_279906_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK73930.1|280057_282685_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
AUK73931.1|282748_285370_+	hypothetical protein	NA	NA	NA	NA	NA
AUK73932.1|286297_286756_-	hypothetical protein	NA	NA	NA	NA	NA
AUK73933.1|287034_289278_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AUK73934.1|289474_291499_-	C4-dicarboxylate ABC transporter permease	NA	NA	NA	NA	NA
AUK73935.1|291622_292585_-	immunogenic protein	NA	NA	NA	NA	NA
AUK73936.1|292796_293936_+	alanine racemase	NA	NA	NA	NA	NA
AUK73937.1|293958_294924_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK73938.1|295119_296310_+	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
AUK73939.1|296323_296569_+	hypothetical protein	NA	NA	NA	NA	NA
AUK73940.1|296597_298619_-	3-methylcrotonyl-CoA carboxylase	NA	NA	NA	NA	NA
AUK77048.1|298665_300273_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
AUK73941.1|300373_301543_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AUK73942.1|304472_305375_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73943.1|305398_306457_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AUK73944.1|306531_306906_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AUK73945.1|307119_307464_+	hypothetical protein	NA	NA	NA	NA	NA
AUK73946.1|307460_308411_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73947.1|308509_309460_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73948.1|311016_311862_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK73949.1|311949_313113_-	alpha-hydroxy-acid oxidizing enzyme	NA	NA	NA	NA	NA
AUK77049.1|313243_313447_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77050.1|313531_314503_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK73950.1|314541_315969_-	amidase	NA	NA	NA	NA	NA
AUK73951.1|316088_316880_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK73952.1|316998_319452_-	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
AUK73953.1|319546_320656_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
AUK73954.1|320658_322068_-	chromosomal replication initiation protein DnaA	NA	NA	NA	NA	NA
AUK73955.1|322473_322608_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
AUK73956.1|322703_323075_+	ribonuclease P protein component	NA	NA	NA	NA	NA
AUK73957.1|323071_323344_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
AUK73958.1|323392_325084_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
AUK73959.1|325314_326265_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	614410	672870	4102575	tRNA,transposase	Pandoravirus(14.29%)	49	NA	NA
AUK74205.1|614410_615400_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK74206.1|615639_615888_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74207.1|615924_617058_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74208.1|617156_618107_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK74209.1|619329_620232_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK74210.1|620233_621088_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AUK74211.1|621134_622244_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AUK74212.1|622254_622773_-	flavin reductase	NA	NA	NA	NA	NA
AUK74213.1|622802_623435_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AUK74214.1|623506_624166_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AUK74215.1|624162_625302_-	MFS transporter	NA	NA	NA	NA	NA
AUK74216.1|625651_626524_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AUK74217.1|626679_627417_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK74218.1|627419_629051_-	acyl-CoA synthetase	NA	NA	NA	NA	NA
AUK77069.1|629146_630136_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK74219.1|630132_630843_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK77070.1|630938_631955_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK74220.1|632226_632853_-	aminotransferase	NA	NA	NA	NA	NA
AUK74221.1|632908_634036_-	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AUK74222.1|634041_639759_-	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AUK74223.1|640087_640258_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74224.1|640326_641271_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AUK74225.1|641459_642395_+	glycosyl transferase	NA	NA	NA	NA	NA
AUK74226.1|642512_644084_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK74227.1|644163_645372_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK77071.1|645920_646787_+	EamA family transporter	NA	NA	NA	NA	NA
AUK74228.1|649147_649369_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77072.1|649699_650716_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK74229.1|650800_651052_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
AUK74230.1|651055_651871_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
AUK74231.1|651983_652862_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
AUK74232.1|652973_654737_-|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AUK74233.1|654852_656193_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AUK74234.1|657262_658687_-	ATPase	NA	NA	NA	NA	NA
AUK74235.1|658686_659388_-	two-component system response regulator OmpR	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
AUK74236.1|660940_661843_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77073.1|661938_662910_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK74237.1|662914_663595_-	hypothetical protein	NA	NA	NA	NA	NA
AUK74238.1|663732_664125_+	osmotically inducible protein OsmC	NA	NA	NA	NA	NA
AUK77074.1|664232_665249_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK74239.1|665488_666274_-	enoyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA	NA
AUK74240.1|666368_667778_-	lytic transglycosylase	NA	NA	NA	NA	NA
AUK74241.1|667788_668589_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AUK74242.1|668609_669380_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUK74243.1|669422_669890_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AUK74244.1|669886_670837_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK74245.1|670935_671256_-	hypothetical protein	NA	A0A1V0S9J5	Catovirus	45.3	2.4e-14
AUK74246.1|671414_671657_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74247.1|671919_672870_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	714731	792040	4102575	tRNA,transposase,integrase,protease	Bacillus_phage(20.0%)	59	761868:761886	781756:781774
AUK74284.1|714731_715682_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK74285.1|715780_717256_-	microcystin degradation protein MlrC	NA	NA	NA	NA	NA
AUK74286.1|718843_719731_-	peptide ABC transporter permease	NA	NA	NA	NA	NA
AUK74287.1|719733_720675_-	peptide ABC transporter	NA	NA	NA	NA	NA
AUK74288.1|720720_722286_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK74289.1|722573_723788_-	methylmalonate-semialdehyde dehydrogenase (acylating)	NA	NA	NA	NA	NA
AUK74290.1|724063_725389_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
AUK74291.1|725571_727029_+	GntR family transcriptional regulator	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
AUK74292.1|726992_727490_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
AUK74293.1|727520_728492_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
AUK77075.1|728544_728976_-	peroxiredoxin	NA	NA	NA	NA	NA
AUK74294.1|729105_729774_+	demethoxyubiquinone hydroxylase family protein	NA	NA	NA	NA	NA
AUK74295.1|730502_731606_+	glycosyl transferase	NA	NA	NA	NA	NA
AUK74296.1|731711_732986_+	Vi polysaccharide biosynthesis protein VipA/TviB	NA	NA	NA	NA	NA
AUK74297.1|732997_734023_+	LPS biosynthesis protein WbpP	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AUK74298.1|734024_735395_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74299.1|735395_736532_+	glycosyl transferase	NA	NA	NA	NA	NA
AUK74300.1|736578_738504_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
AUK74301.1|738500_739622_+	glycosyl transferase	NA	NA	NA	NA	NA
AUK74302.1|739618_740773_+	glycosyl transferase	NA	NA	NA	NA	NA
AUK74303.1|740769_741900_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AUK74304.1|741907_743473_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AUK74305.1|743479_744862_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
AUK74306.1|745140_745752_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74307.1|745843_747259_+	hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
AUK74308.1|747276_747987_+	two-component system response regulator	NA	NA	NA	NA	NA
AUK74309.1|747983_749306_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AUK77076.1|749451_751347_+	sulfatase	NA	NA	NA	NA	NA
AUK74310.1|751472_752786_-	fumarylacetoacetase	NA	NA	NA	NA	NA
AUK74311.1|752894_754193_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
AUK74312.1|754375_755284_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK74313.1|755293_755503_-	hypothetical protein	NA	NA	NA	NA	NA
AUK74314.1|755514_757194_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AUK74315.1|757295_758249_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AUK74316.1|758339_759167_-	DNA-formamidopyrimidine glycosylase	NA	NA	NA	NA	NA
AUK74317.1|759165_761052_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74318.1|761048_761648_+	lipoprotein localization factor LolB	NA	NA	NA	NA	NA
AUK74319.1|761696_762596_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
761868:761886	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AUK74320.1|762804_763755_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
AUK74321.1|763877_764492_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
AUK74322.1|764620_765217_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AUK74323.1|765213_765996_+|protease	CAAX protease	protease	NA	NA	NA	NA
AUK74324.1|766068_767160_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AUK74325.1|767439_768567_+|integrase	integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AUK74326.1|768908_769955_+	cell filamentation protein Fic	NA	NA	NA	NA	NA
AUK77077.1|770465_773222_+	restriction endonuclease	NA	NA	NA	NA	NA
AUK74327.1|773223_776175_+	site-specific DNA-methyltransferase	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AUK74328.1|776190_777402_+	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AUK74329.1|777633_778536_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK74330.1|779050_779308_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74331.1|779536_779782_-	hypothetical protein	NA	NA	NA	NA	NA
AUK74332.1|779851_780763_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74333.1|780832_781129_+	hypothetical protein	NA	A0A1V0SIN4	Klosneuvirus	34.1	5.5e-05
AUK74334.1|781207_781678_-	hypothetical protein	NA	NA	NA	NA	NA
AUK74335.1|781912_782863_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
781756:781774	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
AUK74336.1|783281_785846_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK74337.1|785890_787744_-	hypothetical protein	NA	NA	NA	NA	NA
AUK74338.1|788076_789648_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK74339.1|791089_792040_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	911307	975141	4102575	tRNA,transposase,protease	Pseudomonas_phage(30.0%)	57	NA	NA
AUK74435.1|911307_912258_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK74436.1|912356_913220_-	shikimate dehydrogenase	NA	NA	NA	NA	NA
AUK74437.1|913216_914116_-	energy transducer TonB	NA	NA	NA	NA	NA
AUK74438.1|914153_916037_-	ribonuclease II	NA	NA	NA	NA	NA
AUK74439.1|916108_916702_-	esterase	NA	NA	NA	NA	NA
AUK74440.1|916712_918083_-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
AUK74441.1|918165_918714_+	thioredoxin	NA	NA	NA	NA	NA
AUK74442.1|918792_919227_+	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
AUK74443.1|919316_919766_+	acetyl-CoA carboxylase, biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AUK74444.1|919775_921122_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AUK74445.1|922087_923185_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77088.1|923196_924138_+	carbohydrate kinase family protein	NA	NA	NA	NA	NA
AUK74446.1|924310_924814_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74447.1|925094_925334_+	acyl carrier protein	NA	NA	NA	NA	NA
AUK74448.1|925311_926487_+	teichoic acid biosynthesis protein	NA	NA	NA	NA	NA
AUK74449.1|926483_926609_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74450.1|926616_927744_+	membrane-bound O-acyltransferase	NA	A0A125RNP0	Pseudomonas_phage	30.8	3.7e-25
AUK74451.1|927763_929218_+	D-alanine--poly(phosphoribitol) ligase	NA	A0A2K9L3I8	Tupanvirus	25.1	7.3e-26
AUK74452.1|929225_929786_-	hypothetical protein	NA	NA	NA	NA	NA
AUK74453.1|929939_930467_-	histone	NA	NA	NA	NA	NA
AUK74454.1|930784_931981_-	ribonucleotide-diphosphate reductase subunit beta	NA	A0A2H4P762	Pseudomonas_phage	28.9	1.0e-33
AUK74455.1|932002_934930_-	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	43.9	3.4e-171
AUK74456.1|935235_938298_-	pyruvate ferredoxin oxidoreductase	NA	NA	NA	NA	NA
AUK74457.1|938429_938687_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74458.1|938859_939312_+	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AUK74459.1|939513_940023_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74460.1|940091_941279_+	MFS transporter	NA	NA	NA	NA	NA
AUK77089.1|941282_942689_-|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
AUK74461.1|942824_945284_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK74462.1|945280_946231_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK74463.1|946329_947004_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK74464.1|947300_948797_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74465.1|948913_950302_+	ATP-dependent RNA helicase DbpA	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	33.5	4.6e-54
AUK74466.1|950407_950797_+	glyoxalase	NA	NA	NA	NA	NA
AUK74467.1|950808_951501_-	hydrolase	NA	NA	NA	NA	NA
AUK74468.1|951515_952352_-	sulfonate ABC transporter permease	NA	NA	NA	NA	NA
AUK74469.1|952354_953164_-	spermidine/putrescine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.9	2.6e-33
AUK74470.1|954420_955095_-	carboxylesterase	NA	NA	NA	NA	NA
AUK74471.1|955108_955660_-	hypothetical protein	NA	NA	NA	NA	NA
AUK74472.1|955718_957083_+|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
AUK74473.1|957424_958522_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK77090.1|958817_959246_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
AUK74474.1|959255_959648_+	30S ribosomal protein S9	NA	NA	NA	NA	NA
AUK74475.1|959836_960901_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
AUK74476.1|960937_961684_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74477.1|961771_962143_+	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	56.9	4.7e-30
AUK74478.1|962212_963349_-	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
AUK74479.1|963354_964770_-	metallopeptidase	NA	A8ATH6	Listeria_phage	46.9	1.9e-18
AUK74480.1|964861_965812_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK74481.1|965910_966861_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK74482.1|967128_968358_+|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
AUK74483.1|968393_969050_+	phospholipid-binding protein	NA	NA	NA	NA	NA
AUK74484.1|969269_970517_+	serine hydroxymethyltransferase	NA	A0A219YCZ0	Aeromonas_phage	52.7	1.1e-99
AUK74485.1|970674_971157_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
AUK74486.1|972151_972715_-	hydrolase	NA	NA	NA	NA	NA
AUK77091.1|972920_974045_+	riboflavin biosynthesis protein RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	3.8e-38
AUK74487.1|974190_975141_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	1048427	1106091	4102575	tRNA,transposase	Bacillus_virus(25.0%)	53	NA	NA
AUK74543.1|1048427_1049378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK74544.1|1049480_1050143_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK74545.1|1050245_1050656_-	hypothetical protein	NA	NA	NA	NA	NA
AUK74546.1|1050760_1051762_+	amidase	NA	NA	NA	NA	NA
AUK74547.1|1051764_1052961_+	formyl-CoA transferase	NA	NA	NA	NA	NA
AUK74548.1|1052981_1053785_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK74549.1|1053865_1054162_+	histidine kinase	NA	NA	NA	NA	NA
AUK74550.1|1054192_1054756_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77095.1|1054796_1055654_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK74551.1|1055661_1056411_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
AUK74552.1|1056432_1057305_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74553.1|1057333_1058113_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK74554.1|1058146_1058944_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK74555.1|1061598_1061991_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74556.1|1061984_1062845_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK74557.1|1062848_1063811_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK74558.1|1064578_1065277_+	branched-chain amino acid ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.7	3.8e-12
AUK74559.1|1066137_1067088_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK74560.1|1067151_1067427_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74561.1|1067437_1068307_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK74562.1|1068377_1069073_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74563.1|1069062_1069572_+|tRNA	tRNA-specific adenosine deaminase	tRNA	NA	NA	NA	NA
AUK74564.1|1069568_1070789_+	MFS transporter	NA	NA	NA	NA	NA
AUK74565.1|1070736_1071639_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK74566.1|1073850_1075224_+	amidase	NA	NA	NA	NA	NA
AUK74567.1|1075262_1075964_-	riboflavin synthase subunit alpha	NA	NA	NA	NA	NA
AUK74568.1|1076262_1077252_+	MFS transporter	NA	NA	NA	NA	NA
AUK74569.1|1077352_1077814_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK74570.1|1077829_1078378_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AUK74571.1|1078519_1079995_-	acid--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
AUK74572.1|1080100_1081192_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74573.1|1081195_1081978_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK74574.1|1081987_1082776_-	ABC transporter	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
AUK74575.1|1083901_1084336_-	thioesterase	NA	NA	NA	NA	NA
AUK74576.1|1084332_1085343_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AUK74577.1|1085386_1086313_-	hypothetical protein	NA	NA	NA	NA	NA
AUK74578.1|1086599_1086968_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74579.1|1087184_1088135_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK74580.1|1088179_1090606_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
AUK74581.1|1090654_1091347_+	hydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
AUK74582.1|1091419_1092619_+	aromatic amino acid aminotransferase	NA	NA	NA	NA	NA
AUK74583.1|1092636_1093542_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK74584.1|1093657_1094587_+	acetylxylan esterase	NA	NA	NA	NA	NA
AUK74585.1|1094612_1095959_+	MFS transporter	NA	NA	NA	NA	NA
AUK74586.1|1095971_1096736_+	short-chain dehydrogenase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
AUK74587.1|1096749_1097532_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK74588.1|1097724_1098675_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK74589.1|1098736_1099846_-	porin	NA	NA	NA	NA	NA
AUK74590.1|1100358_1101195_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AUK74591.1|1101321_1102230_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK74592.1|1102226_1103177_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK74593.1|1103562_1104105_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74594.1|1105188_1106091_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	1110621	1172752	4102575	transposase	Bacillus_virus(16.67%)	58	NA	NA
AUK74598.1|1110621_1111524_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK74599.1|1111520_1113629_-	hypothetical protein	NA	NA	NA	NA	NA
AUK74600.1|1113773_1114385_-	3-methyladenine DNA glycosylase	NA	NA	NA	NA	NA
AUK74601.1|1114464_1114929_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AUK74602.1|1115204_1115390_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74603.1|1115441_1116194_-	DNA-binding protein	NA	NA	NA	NA	NA
AUK74604.1|1116200_1117463_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK74605.1|1119820_1120948_-	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AUK74606.1|1120958_1121786_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AUK74607.1|1121772_1122639_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK74608.1|1122635_1123544_-	hypothetical protein	NA	NA	NA	NA	NA
AUK74609.1|1123550_1124009_-	hypothetical protein	NA	NA	NA	NA	NA
AUK74610.1|1124005_1124410_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77097.1|1124772_1125684_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74611.1|1125698_1126409_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK74612.1|1126405_1127650_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74613.1|1127651_1128086_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74614.1|1128114_1128420_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AUK74615.1|1128518_1129469_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK74616.1|1129525_1130674_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AUK74617.1|1130754_1131657_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK74618.1|1132236_1133034_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK74619.1|1133081_1133735_-	DL-methionine transporter permease subunit	NA	NA	NA	NA	NA
AUK74620.1|1133691_1134780_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AUK74621.1|1134944_1137170_-	glycosyl hydrolase	NA	NA	NA	NA	NA
AUK74622.1|1139447_1140344_+	inositol monophosphatase	NA	NA	NA	NA	NA
AUK74623.1|1140512_1141415_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK74624.1|1141411_1143103_-	long-chain fatty acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.4e-33
AUK74625.1|1143164_1144361_+	amidohydrolase	NA	NA	NA	NA	NA
AUK74626.1|1144374_1145253_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK74627.1|1145359_1146406_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74628.1|1146469_1146880_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AUK74629.1|1146890_1148363_+	magnesium transporter	NA	NA	NA	NA	NA
AUK74630.1|1148558_1149422_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK74631.1|1149505_1150657_-	Rieske (2Fe-2S) protein	NA	NA	NA	NA	NA
AUK74632.1|1150804_1151815_-	hypothetical protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
AUK74633.1|1151985_1152951_-	MFS transporter	NA	NA	NA	NA	NA
AUK77098.1|1153125_1153956_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK74634.1|1154042_1154309_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
AUK74635.1|1154313_1155225_+	geranyl transferase	NA	NA	NA	NA	NA
AUK74636.1|1155274_1157137_+	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
AUK74637.1|1157293_1158091_+	GTP cyclohydrolase	NA	NA	NA	NA	NA
AUK74638.1|1158310_1158691_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
AUK74639.1|1158738_1159062_+	primosomal replication protein N	NA	NA	NA	NA	NA
AUK74640.1|1159154_1159427_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
AUK74641.1|1159442_1159898_+	50S ribosomal protein L9	NA	NA	NA	NA	NA
AUK74642.1|1160014_1160851_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74643.1|1160847_1162221_+	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
AUK74644.1|1162241_1163210_-	bile acid:sodium symporter	NA	NA	NA	NA	NA
AUK74645.1|1163289_1164267_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
AUK74646.1|1164371_1166051_-	phosphate starvation-inducible protein PhoH	NA	A0A2I7SAD7	Vibrio_phage	36.7	7.3e-70
AUK74647.1|1166130_1166595_-	peroxiredoxin	NA	NA	NA	NA	NA
AUK74648.1|1166597_1167050_-	hypothetical protein	NA	NA	NA	NA	NA
AUK74649.1|1167266_1168454_+	alanine transaminase	NA	NA	NA	NA	NA
AUK74650.1|1168450_1169755_+	homoserine dehydrogenase	NA	NA	NA	NA	NA
AUK74651.1|1169751_1171158_+	threonine synthase	NA	NA	NA	NA	NA
AUK74652.1|1171371_1171593_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74653.1|1171801_1172752_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	1176304	1242770	4102575	protease,transposase	uncultured_Mediterranean_phage(25.0%)	51	NA	NA
AUK74655.1|1176304_1177255_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK74656.1|1177844_1178621_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AUK74657.1|1178738_1179002_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
AUK74658.1|1179102_1180107_-	iron dicitrate transport regulator FecR	NA	NA	NA	NA	NA
AUK74659.1|1180307_1181909_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AUK74660.1|1181934_1182693_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK74661.1|1182784_1183441_-	adenylate kinase	NA	NA	NA	NA	NA
AUK74662.1|1183531_1184296_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AUK74663.1|1184305_1184494_-	hypothetical protein	NA	NA	NA	NA	NA
AUK74664.1|1184549_1185593_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AUK74665.1|1185589_1186003_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AUK74666.1|1185999_1186620_-	flagellar motor protein MotA	NA	NA	NA	NA	NA
AUK74667.1|1186900_1187851_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK74668.1|1188018_1189410_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AUK74669.1|1189482_1190061_+	superoxide dismutase	NA	NA	NA	NA	NA
AUK74670.1|1190177_1191575_+	chloride channel protein EriC	NA	NA	NA	NA	NA
AUK74671.1|1191690_1192896_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AUK74672.1|1192995_1193487_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	4.8e-14
AUK74673.1|1193608_1193854_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AUK74674.1|1194081_1194396_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AUK77100.1|1195109_1199675_+	alpha-2-macroglobulin	NA	NA	NA	NA	NA
AUK77099.1|1199671_1201840_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AUK74675.1|1201895_1204211_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
AUK74676.1|1204215_1205535_+	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AUK74677.1|1205553_1207227_+	paraquat-inducible protein B	NA	NA	NA	NA	NA
AUK74678.1|1207231_1207900_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74679.1|1208056_1211878_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AUK74680.1|1212256_1213159_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK74681.1|1213180_1214326_+	branched chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK74682.1|1214474_1215404_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK74683.1|1215400_1216489_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUK74684.1|1216485_1217289_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AUK74685.1|1217285_1218017_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AUK74686.1|1218074_1219364_-	MFS transporter	NA	NA	NA	NA	NA
AUK74687.1|1219460_1220063_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK74688.1|1221007_1223287_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK74689.1|1224615_1224954_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK74690.1|1225661_1225928_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74691.1|1227682_1228585_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK74692.1|1228581_1229913_-	arabinose ABC transporter permease	NA	NA	NA	NA	NA
AUK77101.1|1231173_1233174_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AUK74693.1|1233166_1233808_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AUK74694.1|1233804_1234212_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AUK74695.1|1234208_1235009_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74696.1|1235083_1235788_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK74697.1|1235819_1236614_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AUK74698.1|1236610_1237561_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK74699.1|1237659_1238562_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK74700.1|1238708_1239143_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AUK74701.1|1239225_1241562_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AUK77102.1|1241753_1242770_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	1258965	1315672	4102575	tRNA,transposase	Agrobacterium_phage(20.0%)	43	NA	NA
AUK74716.1|1258965_1259916_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK74717.1|1260018_1260603_+	nitroreductase	NA	NA	NA	NA	NA
AUK77105.1|1260672_1262094_-	argininosuccinate lyase	NA	NA	NA	NA	NA
AUK74718.1|1262201_1263548_+	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AUK74719.1|1263586_1265221_+	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AUK74720.1|1265264_1265603_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK74721.1|1265627_1266002_-	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AUK74722.1|1268626_1268854_-	hypothetical protein	NA	NA	NA	NA	NA
AUK74723.1|1269114_1269996_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK74724.1|1270103_1271732_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AUK74725.1|1271773_1273291_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK74726.1|1273385_1274330_+	peptide ABC transporter	NA	NA	NA	NA	NA
AUK74727.1|1275511_1276414_-	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
AUK74728.1|1276410_1277676_-	peptidase M48	NA	NA	NA	NA	NA
AUK74729.1|1277720_1278266_+	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AUK74730.1|1278299_1278986_+	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AUK74731.1|1278957_1279887_-	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AUK74732.1|1280058_1281048_+	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AUK74733.1|1281112_1281397_+	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AUK74734.1|1281412_1282177_+	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AUK77106.1|1282173_1282680_+	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AUK74735.1|1283889_1284792_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK74736.1|1284879_1286532_+	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AUK74737.1|1286542_1287331_+	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AUK74738.1|1287330_1287801_+	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AUK74739.1|1287875_1289189_+	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AUK74740.1|1289242_1289848_-	fimbrial protein	NA	NA	NA	NA	NA
AUK74741.1|1290164_1291115_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK74742.1|1291111_1292062_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK74743.1|1292160_1293063_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK74744.1|1293371_1294400_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AUK74745.1|1294479_1295778_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AUK74746.1|1295774_1296311_-	TRAP transporter small permease protein	NA	NA	NA	NA	NA
AUK74747.1|1296668_1300715_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
AUK74748.1|1300955_1308617_+	adhesin	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
AUK74749.1|1308613_1309516_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK74750.1|1310703_1311177_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUK74751.1|1311316_1311937_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AUK77107.1|1312084_1312873_+	aldolase	NA	NA	NA	NA	NA
AUK74752.1|1312927_1314019_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK74753.1|1314040_1314484_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
AUK74754.1|1314512_1315145_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
AUK74755.1|1315255_1315672_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
>prophage 13
CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	1344087	1401249	4102575	transposase	Klosneuvirus(16.67%)	53	NA	NA
AUK74778.1|1344087_1344990_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK74779.1|1345175_1345445_-	hypothetical protein	NA	NA	NA	NA	NA
AUK74780.1|1345683_1346322_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK74781.1|1346571_1347108_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74782.1|1347126_1348740_+	autotransporter	NA	NA	NA	NA	NA
AUK74783.1|1348736_1349348_-	hypothetical protein	NA	NA	NA	NA	NA
AUK74784.1|1349570_1351031_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
AUK74785.1|1351127_1352720_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
AUK74786.1|1353073_1353331_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK74787.1|1353332_1354673_+	toxin HipA	NA	NA	NA	NA	NA
AUK74788.1|1354768_1355458_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK74789.1|1355470_1356901_+	MFS transporter	NA	NA	NA	NA	NA
AUK74790.1|1358625_1359447_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK74791.1|1359457_1361029_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74792.1|1361057_1362035_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK74793.1|1362061_1362865_+	nitrate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
AUK74794.1|1362861_1363656_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK74795.1|1363663_1364899_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77111.1|1364891_1365326_+	aconitase subunit 2	NA	NA	NA	NA	NA
AUK74796.1|1366075_1367026_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK74797.1|1367005_1367587_-	hypothetical protein	NA	NA	NA	NA	NA
AUK74798.1|1367647_1369375_-	sodium-independent anion transporter	NA	NA	NA	NA	NA
AUK74799.1|1369486_1370845_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AUK74800.1|1371137_1372088_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK74801.1|1372128_1373199_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74802.1|1373221_1374100_-	hypothetical protein	NA	NA	NA	NA	NA
AUK74803.1|1374271_1375243_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK74804.1|1375405_1376248_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK74805.1|1376409_1377090_+	anti-sigma factor	NA	NA	NA	NA	NA
AUK74806.1|1377083_1378253_+	amine oxidase	NA	NA	NA	NA	NA
AUK74807.1|1378249_1379281_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AUK74808.1|1379348_1380566_+	MFS transporter	NA	NA	NA	NA	NA
AUK74809.1|1380600_1382133_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK74810.1|1382213_1382837_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK74811.1|1382867_1383479_+	RhtB family transporter	NA	NA	NA	NA	NA
AUK74812.1|1383514_1383985_+	histidine kinase	NA	NA	NA	NA	NA
AUK74813.1|1384159_1384408_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74814.1|1384415_1385420_+	peptidase M20	NA	NA	NA	NA	NA
AUK74815.1|1385456_1386971_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK74816.1|1386974_1387934_+	ABC transporter	NA	NA	NA	NA	NA
AUK74817.1|1387962_1388766_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
AUK74818.1|1388767_1390402_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AUK74819.1|1390485_1391547_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUK74820.1|1392018_1392543_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AUK74821.1|1393006_1393909_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK74822.1|1393905_1394940_-	hydrolase	NA	NA	NA	NA	NA
AUK74823.1|1395048_1395687_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74824.1|1395981_1396209_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK74825.1|1396331_1397045_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUK74826.1|1397289_1398240_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK74827.1|1398379_1398625_+	hypothetical protein	NA	NA	NA	NA	NA
AUK74828.1|1398739_1400188_-	2-aminoadipate aminotransferase	NA	NA	NA	NA	NA
AUK74829.1|1400298_1401249_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	1673678	1737208	4102575	protease,transposase	Klebsiella_phage(11.11%)	50	NA	NA
AUK75058.1|1673678_1674629_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75059.1|1674615_1674831_-	hypothetical protein	NA	NA	NA	NA	NA
AUK75060.1|1681107_1683855_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK75061.1|1683875_1684499_-	septum formation protein Maf	NA	NA	NA	NA	NA
AUK75062.1|1684510_1684981_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
AUK75063.1|1684992_1685379_-	ribosome silencing factor	NA	NA	NA	NA	NA
AUK77131.1|1685440_1686028_-	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
AUK75064.1|1686024_1686936_-	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
AUK75065.1|1686951_1688262_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AUK75066.1|1688359_1689091_-	hypothetical protein	NA	NA	NA	NA	NA
AUK75067.1|1689245_1690766_+	ATP-binding protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
AUK77132.1|1690838_1692182_+	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
AUK75068.1|1692216_1693506_-	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
AUK75069.1|1693723_1694656_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AUK75070.1|1694666_1696160_-	aldehyde dehydrogenase PuuC	NA	NA	NA	NA	NA
AUK75071.1|1696156_1697080_-	EamA family transporter	NA	NA	NA	NA	NA
AUK75072.1|1697082_1698345_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AUK77133.1|1698364_1699378_-	acetylpolyamine amidohydrolase	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
AUK75073.1|1699450_1699741_-	cupin	NA	NA	NA	NA	NA
AUK75074.1|1699770_1701045_-	4-aminobutyrate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
AUK75075.1|1701187_1702138_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75076.1|1702134_1703766_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.7e-21
AUK75077.1|1703776_1704616_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK75078.1|1704612_1705629_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK75079.1|1705736_1707311_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK77134.1|1707745_1709275_+	DNA-binding protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.0e-14
AUK75080.1|1709379_1710447_+	tartrate dehydrogenase	NA	NA	NA	NA	NA
AUK75081.1|1710465_1712052_-	MFS transporter	NA	NA	NA	NA	NA
AUK75082.1|1712048_1713239_-	HlyD family secretion protein	NA	NA	NA	NA	NA
AUK75083.1|1714811_1715300_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUK75084.1|1715359_1716217_-	EamA family transporter	NA	NA	NA	NA	NA
AUK75085.1|1716279_1717230_+	EamA family transporter	NA	NA	NA	NA	NA
AUK75086.1|1717292_1718282_+	quinone oxidoreductase	NA	NA	NA	NA	NA
AUK75087.1|1718356_1719238_-|protease	zinc metalloprotease HtpX	protease	NA	NA	NA	NA
AUK75088.1|1720295_1721147_+	sulfurtransferase	NA	NA	NA	NA	NA
AUK75089.1|1721163_1721733_-	phosphohydrolase	NA	NA	NA	NA	NA
AUK75090.1|1721763_1722627_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK75091.1|1722786_1723863_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
AUK77135.1|1723927_1725625_+	phosphonate ABC transporter permease	NA	NA	NA	NA	NA
AUK75092.1|1725641_1726472_+	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
AUK75093.1|1726500_1727523_+	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK75094.1|1727587_1727971_+	hypothetical protein	NA	NA	NA	NA	NA
AUK75095.1|1728100_1729003_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75096.1|1729149_1730052_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75097.1|1730048_1731371_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK77136.1|1731471_1731762_-	hypothetical protein	NA	NA	NA	NA	NA
AUK75098.1|1731922_1733236_+	pyrimidine utilization transport protein G	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
AUK75099.1|1733266_1734904_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
AUK75100.1|1735527_1736004_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
AUK75101.1|1736305_1737208_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	1776369	1824384	4102575	tRNA,transposase	Moraxella_phage(18.18%)	42	NA	NA
AUK75136.1|1776369_1777272_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75137.1|1777418_1780019_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AUK75138.1|1780125_1781130_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK75139.1|1781238_1782579_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AUK75140.1|1782619_1783648_-	silent information regulator protein Sir2	NA	NA	NA	NA	NA
AUK75141.1|1783843_1784389_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUK75142.1|1784385_1784946_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AUK75143.1|1785044_1785995_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75144.1|1786032_1786620_+	thymidylate synthase	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AUK75145.1|1786637_1787021_-	thiol reductase thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AUK75146.1|1788380_1789673_-	guanine permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AUK75147.1|1789807_1790848_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AUK77144.1|1790945_1791962_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK75148.1|1792229_1792865_-	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AUK75149.1|1793002_1793761_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AUK75150.1|1793745_1794525_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
AUK75151.1|1794542_1795427_+	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AUK75152.1|1795423_1796203_+	3'-5' exonuclease	NA	NA	NA	NA	NA
AUK75153.1|1796307_1796907_+	hypothetical protein	NA	NA	NA	NA	NA
AUK75154.1|1797195_1797948_+	hypothetical protein	NA	NA	NA	NA	NA
AUK75155.1|1798066_1799467_+	23S rRNA (uracil(1939)-C(5))-methyltransferase	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AUK75156.1|1799490_1799889_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AUK75157.1|1800064_1800265_+	heavy metal transporter	NA	NA	NA	NA	NA
AUK75158.1|1800403_1801132_+	glutathione peroxidase	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AUK75159.1|1801265_1802681_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AUK75160.1|1802684_1803548_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AUK75161.1|1803560_1804310_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AUK77145.1|1804552_1806508_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AUK75162.1|1806489_1807158_-	arylesterase	NA	NA	NA	NA	NA
AUK75163.1|1807980_1808883_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75164.1|1809029_1809932_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75165.1|1810080_1810419_-	phospholipid-binding protein	NA	NA	NA	NA	NA
AUK75166.1|1810476_1810638_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AUK75167.1|1810669_1810870_-	general stress protein CsbD	NA	NA	NA	NA	NA
AUK75168.1|1811135_1813709_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AUK75169.1|1813779_1816329_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AUK75170.1|1818897_1819368_+	hypothetical protein	NA	NA	NA	NA	NA
AUK75171.1|1819459_1820611_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK75172.1|1820664_1821486_+	hypothetical protein	NA	NA	NA	NA	NA
AUK75173.1|1821524_1822754_+	lytic transglycosylase	NA	NA	NA	NA	NA
AUK75174.1|1822882_1823323_+	hypothetical protein	NA	NA	NA	NA	NA
AUK75175.1|1823433_1824384_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	1885946	1957455	4102575	tRNA,transposase	Klosneuvirus(22.22%)	59	NA	NA
AUK75230.1|1885946_1886897_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75231.1|1887021_1887831_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK75232.1|1888079_1888982_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75233.1|1890255_1891473_+	hypothetical protein	NA	NA	NA	NA	NA
AUK75234.1|1892528_1893431_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK75235.1|1893507_1894380_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AUK75236.1|1894510_1894879_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
AUK75237.1|1894936_1895983_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AUK75238.1|1896178_1897435_+	amino acid dehydrogenase	NA	NA	NA	NA	NA
AUK75239.1|1897439_1898777_+	glycerol-3-phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK75240.1|1898926_1899883_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK75241.1|1901340_1901706_+	hypothetical protein	NA	NA	NA	NA	NA
AUK75242.1|1901753_1903328_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK75243.1|1903380_1904325_+	peptide ABC transporter	NA	NA	NA	NA	NA
AUK77148.1|1904252_1905173_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
AUK75244.1|1905165_1906800_+	microcin ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
AUK75245.1|1906796_1908152_+	amidase	NA	NA	NA	NA	NA
AUK75246.1|1909058_1910636_+	hypothetical protein	NA	NA	NA	NA	NA
AUK75247.1|1910639_1911914_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77149.1|1912011_1912386_+	hypothetical protein	NA	NA	NA	NA	NA
AUK75248.1|1914101_1915235_+	general secretion pathway protein	NA	NA	NA	NA	NA
AUK75249.1|1915272_1915878_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
AUK75250.1|1915874_1916693_+	hypothetical protein	NA	NA	NA	NA	NA
AUK75251.1|1916764_1919389_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AUK75252.1|1919375_1919630_+	hypothetical protein	NA	NA	NA	NA	NA
AUK75253.1|1919696_1920278_-	hypothetical protein	NA	NA	NA	NA	NA
AUK75254.1|1920581_1920842_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AUK75255.1|1921007_1921631_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AUK75256.1|1921630_1922404_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AUK75257.1|1922400_1923609_-	class V aminotransferase	NA	NA	NA	NA	NA
AUK75258.1|1923634_1924108_-	hypothetical protein	NA	NA	NA	NA	NA
AUK75259.1|1924181_1925132_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75260.1|1925230_1926133_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75261.1|1926279_1927629_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AUK75262.1|1928394_1929150_+	hypothetical protein	NA	NA	NA	NA	NA
AUK75263.1|1929242_1932125_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AUK75264.1|1932447_1932873_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AUK75265.1|1932900_1934049_+	23S rRNA (adenine(2503)-C(2))-methyltransferase	NA	NA	NA	NA	NA
AUK75266.1|1934045_1934552_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK75267.1|1934567_1935854_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	NA	NA	NA	NA	NA
AUK77150.1|1935903_1937199_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AUK75268.1|1937200_1937839_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77151.1|1937844_1939002_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AUK75269.1|1939028_1940384_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AUK75270.1|1940387_1941458_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AUK75271.1|1941596_1941833_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
AUK75272.1|1941920_1943027_+	GTPase HflX	NA	NA	NA	NA	NA
AUK75273.1|1942992_1944297_+	HflK protein	NA	NA	NA	NA	NA
AUK75274.1|1944315_1945215_+	HflC protein	NA	NA	NA	NA	NA
AUK75275.1|1945398_1946556_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AUK75276.1|1946632_1947928_+	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AUK75277.1|1948041_1948581_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
AUK75278.1|1948858_1949071_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
AUK75279.1|1949090_1951121_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AUK75280.1|1951806_1954089_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
AUK75281.1|1954498_1954798_-	hypothetical protein	NA	NA	NA	NA	NA
AUK75282.1|1955082_1955496_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AUK75283.1|1955455_1956406_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75284.1|1956504_1957455_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	1968707	2017118	4102575	transposase	Klosneuvirus(16.67%)	47	NA	NA
AUK75295.1|1968707_1969610_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75296.1|1969606_1970881_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AUK75297.1|1970984_1972178_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AUK75298.1|1972174_1972828_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK75299.1|1972824_1974261_+	dethiobiotin synthase	NA	NA	NA	NA	NA
AUK75300.1|1974248_1974608_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
AUK75301.1|1974693_1975344_+	hypothetical protein	NA	NA	NA	NA	NA
AUK75302.1|1975628_1976531_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75303.1|1976629_1977493_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75304.1|1977576_1979442_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AUK77155.1|1979699_1981220_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AUK75305.1|1981307_1981958_-	NAD(P)H dehydrogenase	NA	NA	NA	NA	NA
AUK75306.1|1982906_1984202_+	hypothetical protein	NA	NA	NA	NA	NA
AUK75307.1|1984223_1985108_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK77156.1|1985206_1986082_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AUK75308.1|1986071_1986428_-	RNA signal recognition particle	NA	NA	NA	NA	NA
AUK75309.1|1986558_1987533_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK75310.1|1987662_1987842_-	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AUK75311.1|1987984_1988464_+	hypothetical protein	NA	NA	NA	NA	NA
AUK75312.1|1988474_1989311_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK75313.1|1989423_1989795_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK75314.1|1989791_1990343_+	ATPase	NA	NA	NA	NA	NA
AUK75315.1|1990358_1992050_-	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AUK75316.1|1992098_1992779_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK75317.1|1993026_1993491_-	hypothetical protein	NA	NA	NA	NA	NA
AUK75318.1|1993660_1994590_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77157.1|1994602_1995196_-	hypothetical protein	NA	NA	NA	NA	NA
AUK75319.1|1995323_1997141_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AUK75320.1|1997224_1998175_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77158.1|1998273_1998753_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK75321.1|1998875_1999778_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75322.1|1999796_2000144_-	aldehyde-activating protein	NA	NA	NA	NA	NA
AUK75323.1|2000172_2001612_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AUK75324.1|2001630_2002026_-	hypothetical protein	NA	NA	NA	NA	NA
AUK75325.1|2002200_2002809_+	peptidase S16	NA	NA	NA	NA	NA
AUK75326.1|2002821_2003640_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AUK75327.1|2003591_2004566_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK75328.1|2004594_2005656_-	hypothetical protein	NA	NA	NA	NA	NA
AUK75329.1|2005652_2007869_-	aldehyde oxidase	NA	NA	NA	NA	NA
AUK75330.1|2007882_2008341_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AUK75331.1|2008498_2008843_-	hypothetical protein	NA	NA	NA	NA	NA
AUK75332.1|2008999_2009905_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK77159.1|2009991_2011005_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AUK77160.1|2012984_2014001_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK75333.1|2014143_2015496_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AUK75334.1|2015670_2015967_+	hypothetical protein	NA	NA	NA	NA	NA
AUK75335.1|2016113_2017118_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	2029551	2093872	4102575	transposase	Vibrio_phage(20.0%)	54	NA	NA
AUK75349.1|2029551_2030502_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75350.1|2030723_2031674_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75351.1|2031772_2032738_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK75352.1|2032875_2033775_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK75353.1|2034302_2036129_+	DUF3604 domain-containing protein	NA	NA	NA	NA	NA
AUK75354.1|2036486_2037857_+	hypothetical protein	NA	NA	NA	NA	NA
AUK75355.1|2037867_2039064_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AUK75356.1|2039136_2040456_+	acyl--CoA ligase	NA	NA	NA	NA	NA
AUK75357.1|2040452_2041328_+	esterase	NA	NA	NA	NA	NA
AUK75358.1|2041358_2042507_-	carnitine dehydratase	NA	NA	NA	NA	NA
AUK75359.1|2042524_2042839_-	2Fe-2S ferredoxin	NA	NA	NA	NA	NA
AUK75360.1|2042860_2043583_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK75361.1|2043582_2044401_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK75362.1|2044405_2044933_-	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AUK75363.1|2044938_2046195_-	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AUK75364.1|2046553_2047693_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK75365.1|2047770_2048643_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK75366.1|2049561_2050464_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75367.1|2050423_2051059_-	hypothetical protein	NA	NA	NA	NA	NA
AUK75368.1|2051418_2052741_-	isocitrate lyase	NA	NA	NA	NA	NA
AUK75369.1|2053059_2053881_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
AUK75370.1|2053816_2054158_-	hypothetical protein	NA	NA	NA	NA	NA
AUK75371.1|2054167_2055136_-	MFS transporter	NA	NA	NA	NA	NA
AUK75372.1|2055305_2055878_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AUK75373.1|2055917_2057747_-	excinuclease ABC subunit C	NA	NA	NA	NA	NA
AUK75374.1|2057709_2058768_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
AUK75375.1|2058805_2059267_-	holo-ACP synthase	NA	NA	NA	NA	NA
AUK75376.1|2059351_2060098_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AUK75377.1|2061588_2064819_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AUK75378.1|2064885_2066217_-	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AUK75379.1|2066469_2066844_-	DNA-binding protein	NA	NA	NA	NA	NA
AUK75380.1|2066946_2068125_-	hypothetical protein	NA	NA	NA	NA	NA
AUK75381.1|2068135_2068726_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77162.1|2068836_2069643_+	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AUK75382.1|2069668_2070463_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AUK75383.1|2071463_2072438_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK75384.1|2072596_2073109_-	superoxide dismutase	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AUK75385.1|2073265_2074237_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK75386.1|2075981_2076788_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK75387.1|2076784_2078086_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AUK75388.1|2078036_2078801_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK75389.1|2078914_2079685_-	spermidine synthase	NA	NA	NA	NA	NA
AUK75390.1|2079769_2080957_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AUK75391.1|2081029_2081404_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AUK75392.1|2081504_2082767_-	glycine/betaine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AUK75393.1|2082763_2083621_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK75394.1|2083793_2084795_-	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK75395.1|2085246_2086149_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77163.1|2087760_2088912_+	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA	NA
AUK75396.1|2089280_2089517_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
AUK75397.1|2089580_2089748_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
AUK75398.1|2089861_2091667_-	sulfate transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
AUK75399.1|2091920_2092823_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75400.1|2092969_2093872_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	2321686	2384227	4102575	tRNA,transposase	Pandoravirus(20.0%)	57	NA	NA
AUK77180.1|2321686_2322136_-|tRNA	tRNA-specific adenosine deaminase	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
AUK75560.1|2322185_2323034_-	hydrolase	NA	NA	NA	NA	NA
AUK75561.1|2323131_2323674_-	hypothetical protein	NA	NA	NA	NA	NA
AUK75562.1|2323717_2324668_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75563.1|2324823_2325150_-	cation:proton antiporter	NA	NA	NA	NA	NA
AUK75564.1|2325146_2325428_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AUK75565.1|2325427_2325904_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AUK75566.1|2325903_2327532_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AUK75567.1|2327528_2327873_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AUK75568.1|2327872_2330806_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AUK75569.1|2331964_2332867_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75570.1|2333013_2333310_-	hypothetical protein	NA	NA	NA	NA	NA
AUK75571.1|2333416_2334334_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK75572.1|2334338_2335052_-	3-oxoacyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA	NA
AUK75573.1|2335065_2336037_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK75574.1|2336140_2337553_+	hypothetical protein	NA	NA	NA	NA	NA
AUK75575.1|2337786_2338137_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK75576.1|2338140_2339328_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77181.1|2339766_2340489_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AUK75577.1|2340485_2340674_-	hypothetical protein	NA	NA	NA	NA	NA
AUK75578.1|2340782_2341733_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75579.1|2341729_2342158_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77182.1|2343559_2344522_-	hypothetical protein	NA	NA	NA	NA	NA
AUK75580.1|2344637_2345591_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK75581.1|2345600_2346593_-	MFS transporter	NA	NA	NA	NA	NA
AUK75582.1|2346644_2347400_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK75583.1|2347464_2348154_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK75584.1|2348375_2349326_+	hydrolase	NA	NA	NA	NA	NA
AUK75585.1|2349356_2350553_+	alpha-hydroxy-acid oxidizing enzyme	NA	NA	NA	NA	NA
AUK75586.1|2350543_2351323_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK75587.1|2351435_2352362_+	hypothetical protein	NA	NA	NA	NA	NA
AUK75588.1|2352579_2353392_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK75589.1|2353369_2354239_-	2,4-dichlorophenoxyacetate dioxygenase	NA	NA	NA	NA	NA
AUK77183.1|2354482_2355106_+	glutathione S-transferase	NA	NA	NA	NA	NA
AUK75590.1|2355420_2355720_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK75591.1|2355733_2358808_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK75592.1|2358937_2359612_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AUK75593.1|2359604_2361419_+	histidine kinase	NA	NA	NA	NA	NA
AUK75594.1|2361472_2362420_-	hypothetical protein	NA	NA	NA	NA	NA
AUK75595.1|2362572_2363475_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75596.1|2363454_2363934_-	hypothetical protein	NA	NA	NA	NA	NA
AUK75597.1|2364027_2365653_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AUK77185.1|2365702_2366737_-	haloacid dehalogenase	NA	NA	NA	NA	NA
AUK75598.1|2366739_2368086_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77186.1|2368082_2369597_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77184.1|2369587_2370598_-	hypothetical protein	NA	NA	NA	NA	NA
AUK75599.1|2371071_2372013_-	MoxR protein	NA	NA	NA	NA	NA
AUK75600.1|2372021_2372990_-	AAA family ATPase	NA	NA	NA	NA	NA
AUK75601.1|2374529_2375498_+	phenol degradation protein meta	NA	NA	NA	NA	NA
AUK75602.1|2375663_2376665_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK75603.1|2376711_2377470_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK75604.1|2377659_2378397_+	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AUK75605.1|2378495_2379446_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75606.1|2379630_2380413_+	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AUK75607.1|2380406_2381108_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUK75608.1|2381347_2381950_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK75609.1|2383324_2384227_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	2423552	2476570	4102575	transposase	Ectocarpus_siliculosus_virus(12.5%)	50	NA	NA
AUK75635.1|2423552_2424455_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75636.1|2424474_2425380_-	hypothetical protein	NA	NA	NA	NA	NA
AUK75637.1|2425457_2426156_-	quercetin 2,3-dioxygenase	NA	NA	NA	NA	NA
AUK75638.1|2427268_2428756_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AUK75639.1|2428755_2429823_-	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AUK75640.1|2429886_2431299_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AUK75641.1|2431484_2432705_-	YggW family oxidoreductase	NA	NA	NA	NA	NA
AUK75642.1|2432726_2433677_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77190.1|2433775_2434417_-	non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	NA	NA	NA	NA	NA
AUK75643.1|2434543_2436346_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AUK75644.1|2436446_2437400_+	hypothetical protein	NA	NA	NA	NA	NA
AUK75645.1|2437595_2437931_+	hypothetical protein	NA	NA	NA	NA	NA
AUK75646.1|2437997_2438903_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK75647.1|2439084_2440461_+	2-methylcitrate dehydratase	NA	NA	NA	NA	NA
AUK75648.1|2440627_2441368_-	ribonuclease PH	NA	NA	NA	NA	NA
AUK75649.1|2441504_2442431_+	YicC family protein	NA	NA	NA	NA	NA
AUK75650.1|2442703_2442859_+	hypothetical protein	NA	NA	NA	NA	NA
AUK75651.1|2442871_2443000_+	hypothetical protein	NA	NA	NA	NA	NA
AUK75652.1|2442996_2443281_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK75653.1|2443339_2444830_-	AMP nucleosidase	NA	NA	NA	NA	NA
AUK75654.1|2445074_2445674_+	NlpC/P60 family protein 2	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
AUK75655.1|2445678_2446449_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK75656.1|2446686_2447400_+	cytochrome C	NA	NA	NA	NA	NA
AUK75657.1|2447396_2448314_+	cytochrome C	NA	NA	NA	NA	NA
AUK75658.1|2448476_2449082_+	guanylate kinase	NA	U5J9X2	Bacillus_phage	29.6	2.0e-09
AUK75659.1|2449123_2449327_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
AUK75660.1|2449351_2451631_+	guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
AUK75661.1|2451643_2452372_-	glutamine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
AUK75662.1|2452368_2453028_-	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
AUK75663.1|2453096_2453849_-	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
AUK75664.1|2454030_2454933_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75665.1|2455873_2456779_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
AUK75666.1|2456796_2457918_+	hypothetical protein	NA	NA	NA	NA	NA
AUK75667.1|2458006_2458621_-	fimbrial protein	NA	NA	NA	NA	NA
AUK75668.1|2459279_2460467_-	cupin	NA	NA	NA	NA	NA
AUK77191.1|2460463_2463061_-	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
AUK75669.1|2463315_2463531_+	hypothetical protein	NA	NA	NA	NA	NA
AUK75670.1|2463986_2464541_-	NADPH-dependent FMN reductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
AUK77192.1|2464811_2465369_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AUK75671.1|2465480_2466785_+	peptidase	NA	NA	NA	NA	NA
AUK75672.1|2466781_2468293_+	thiol oxidoreductase	NA	NA	NA	NA	NA
AUK75673.1|2468398_2469400_+	aminopeptidase	NA	NA	NA	NA	NA
AUK75674.1|2469389_2470502_+	Tat pathway signal protein	NA	NA	NA	NA	NA
AUK75675.1|2470648_2471551_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75676.1|2471547_2472174_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
AUK75677.1|2472233_2473085_+	hypothetical protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
AUK77193.1|2473251_2473788_+	hypothetical protein	NA	NA	NA	NA	NA
AUK75678.1|2473784_2474549_+	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
AUK75679.1|2474618_2475521_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75680.1|2475667_2476570_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	2489930	2542251	4102575	protease,transposase,tRNA	Planktothrix_phage(15.38%)	55	NA	NA
AUK75687.1|2489930_2490833_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75688.1|2490979_2491348_-	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AUK75689.1|2491453_2492032_-|protease	protease	protease	NA	NA	NA	NA
AUK77195.1|2492149_2492638_-|tRNA	aminoacyl-tRNA deacylase	tRNA	NA	NA	NA	NA
AUK75690.1|2492651_2493584_-	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.5	2.3e-25
AUK75691.1|2493621_2494509_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	28.7	3.4e-18
AUK75692.1|2494666_2496361_+	thiamine pyrophosphate-binding protein	NA	E5ERI2	Ostreococcus_lucimarinus_virus	24.5	3.8e-26
AUK75693.1|2496440_2497634_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK75694.1|2497771_2498215_-	acyl dehydratase	NA	NA	NA	NA	NA
AUK75695.1|2498348_2499908_-	acetolactate synthase large subunit	NA	NA	NA	NA	NA
AUK75696.1|2500036_2500789_-	glutamine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	2.8e-29
AUK75697.1|2500810_2501503_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK75698.1|2501525_2502317_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK75699.1|2502343_2503249_-	agmatinase	NA	NA	NA	NA	NA
AUK75700.1|2503441_2504278_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK75701.1|2504369_2505392_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	40.7	1.6e-67
AUK75702.1|2505528_2506566_-	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	37.8	3.6e-35
AUK75703.1|2506585_2507776_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AUK75704.1|2507778_2508294_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.6	7.0e-16
AUK75705.1|2508443_2508923_-	disulfide bond formation protein DsbB	NA	NA	NA	NA	NA
AUK75706.1|2509186_2509588_-	antitoxin	NA	NA	NA	NA	NA
AUK75707.1|2509590_2509842_-	mRNA interferase MqsR	NA	NA	NA	NA	NA
AUK75708.1|2509896_2510778_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.1	1.8e-51
AUK75709.1|2511002_2511449_+	aldehyde-activating protein	NA	NA	NA	NA	NA
AUK75710.1|2511533_2512598_-	fructose-1,6-bisphosphate aldolase	NA	NA	NA	NA	NA
AUK75711.1|2512734_2513316_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
AUK75712.1|2513550_2514681_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AUK75713.1|2514858_2516085_+	formamidase	NA	A0A1V0S8X7	Catovirus	58.8	5.2e-134
AUK75714.1|2516143_2516659_+	transporter	NA	NA	NA	NA	NA
AUK75715.1|2516681_2517008_+	hypothetical protein	NA	NA	NA	NA	NA
AUK75716.1|2517041_2518232_+	formate dehydrogenase	NA	NA	NA	NA	NA
AUK75717.1|2518305_2518710_+	aldehyde-activating protein	NA	NA	NA	NA	NA
AUK75718.1|2518926_2519877_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75719.1|2519975_2520746_-	ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
AUK75720.1|2520742_2521414_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
AUK75721.1|2521410_2522052_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
AUK75722.1|2522064_2522985_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
AUK75723.1|2523145_2524306_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK75724.1|2524347_2525298_-	ornithine cyclodeaminase	NA	NA	NA	NA	NA
AUK75725.1|2525896_2526121_+	hypothetical protein	NA	NA	NA	NA	NA
AUK75726.1|2526285_2527980_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
AUK75727.1|2528101_2528371_-	phosphocarrier protein HPr	NA	NA	NA	NA	NA
AUK75728.1|2528486_2528885_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
AUK75729.1|2528895_2529852_-	glutathione synthase	NA	NA	NA	NA	NA
AUK75730.1|2529988_2530534_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
AUK75731.1|2530554_2532504_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
AUK75732.1|2532891_2533668_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AUK75733.1|2533673_2534066_+	hypothetical protein	NA	NA	NA	NA	NA
AUK75734.1|2534062_2534470_-	hypothetical protein	NA	NA	NA	NA	NA
AUK75735.1|2534535_2535438_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75736.1|2535434_2536532_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AUK75737.1|2536563_2537466_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75738.1|2539295_2540537_-	hypothetical protein	NA	NA	NA	NA	NA
AUK75739.1|2540548_2541322_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AUK75740.1|2541348_2542251_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	2575111	2613701	4102575	protease,transposase	Planktothrix_phage(14.29%)	35	NA	NA
AUK75769.1|2575111_2576062_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75770.1|2576240_2577935_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK75771.1|2577931_2579017_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AUK75772.1|2579064_2579964_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK75773.1|2579974_2580619_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AUK75774.1|2581640_2584883_-	carbamoyl phosphate synthase large subunit	NA	NA	NA	NA	NA
AUK75775.1|2584893_2586048_-	carbamoyl phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
AUK75776.1|2586274_2587237_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
AUK75777.1|2587383_2588286_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75778.1|2588432_2589335_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75779.1|2589344_2590034_-	hypothetical protein	NA	NA	NA	NA	NA
AUK75780.1|2590093_2590531_-	thioesterase	NA	NA	NA	NA	NA
AUK75781.1|2590576_2591470_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AUK75782.1|2591517_2592690_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK75783.1|2592686_2593841_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK75784.1|2594037_2594388_-	RnfH family protein	NA	NA	NA	NA	NA
AUK75785.1|2594377_2594812_-	ubiquinone-binding protein	NA	NA	NA	NA	NA
AUK75786.1|2594828_2595779_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75787.1|2595926_2596394_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AUK75788.1|2596374_2597532_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AUK75789.1|2597597_2598524_-	paraslipin	NA	NA	NA	NA	NA
AUK75790.1|2598689_2599592_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75791.1|2599626_2600052_-	NfeD-like family protein 1	NA	NA	NA	NA	NA
AUK75792.1|2600175_2600895_+	GMP synthase	NA	NA	NA	NA	NA
AUK75793.1|2600962_2603326_-	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
AUK75794.1|2603487_2604315_+	phosphoenolpyruvate synthase regulatory protein	NA	NA	NA	NA	NA
AUK75795.1|2604326_2605100_-	RNA methyltransferase	NA	NA	NA	NA	NA
AUK75796.1|2605096_2605702_-	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
AUK75797.1|2605688_2606870_-	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
AUK75798.1|2606866_2607661_-	acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
AUK75799.1|2607661_2608117_-	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ	NA	NA	NA	NA	NA
AUK75800.1|2608188_2609280_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
AUK77198.1|2609288_2609852_-	outer membrane protein chaperone	NA	NA	NA	NA	NA
AUK75801.1|2609977_2612314_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
AUK75802.1|2612366_2613701_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
>prophage 23
CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	2641920	2708372	4102575	transposase	uncultured_Caudovirales_phage(40.0%)	58	NA	NA
AUK75828.1|2641920_2642823_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75829.1|2642838_2643051_+	hypothetical protein	NA	NA	NA	NA	NA
AUK75830.1|2643192_2643765_+	flagellar basal body protein FliL	NA	NA	NA	NA	NA
AUK75831.1|2643767_2644778_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AUK75832.1|2644770_2645271_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AUK75833.1|2645281_2645623_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AUK77201.1|2645691_2646426_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AUK75834.1|2646442_2646712_+	EscS/YscS/HrcS family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AUK75835.1|2646734_2647523_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AUK77202.1|2647569_2648586_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK75836.1|2648802_2650245_-	chemotaxis protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AUK75837.1|2650423_2652043_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AUK75838.1|2652163_2653984_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AUK75839.1|2654062_2655595_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AUK75840.1|2655628_2657275_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AUK75841.1|2657344_2658367_-	flagellar rod assembly protein/muramidase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AUK75842.1|2658384_2659518_-	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AUK75843.1|2659520_2660210_-	flagellar basal body L-ring protein	NA	NA	NA	NA	NA
AUK75844.1|2660209_2660995_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AUK75845.1|2661038_2661803_-	flagellar biosynthesis protein FlgF	NA	NA	NA	NA	NA
AUK75846.1|2661841_2663263_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AUK75847.1|2663328_2664033_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AUK75848.1|2664080_2664500_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AUK75849.1|2664512_2664920_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AUK77203.1|2665103_2665814_+	flagella basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AUK75850.1|2665940_2666231_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AUK75851.1|2666248_2666731_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AUK75852.1|2671236_2672391_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
AUK77204.1|2672696_2673713_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK75853.1|2673959_2674748_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK75854.1|2674814_2675495_+	cysteine ABC transporter permease	NA	NA	NA	NA	NA
AUK75855.1|2675491_2676262_+	ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AUK75856.1|2676360_2677311_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75857.1|2677366_2678284_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AUK75858.1|2678294_2679473_-	mandelate racemase	NA	NA	NA	NA	NA
AUK75859.1|2679492_2680488_-	hypothetical protein	NA	NA	NA	NA	NA
AUK75860.1|2682076_2682685_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AUK75861.1|2682672_2683713_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUK75862.1|2683730_2684693_-	hypothetical protein	NA	NA	NA	NA	NA
AUK75863.1|2684689_2685883_-	CoA transferase	NA	NA	NA	NA	NA
AUK75864.1|2685879_2686677_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AUK75865.1|2686702_2687689_-	hypothetical protein	NA	NA	NA	NA	NA
AUK75866.1|2687707_2689747_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AUK77205.1|2689948_2690629_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK75867.1|2690642_2691554_-	CoA ester lyase	NA	NA	NA	NA	NA
AUK75868.1|2691550_2692129_-	NADPH-dependent FMN reductase	NA	NA	NA	NA	NA
AUK75869.1|2692267_2693173_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK75870.1|2693180_2696600_+	nuclease	NA	NA	NA	NA	NA
AUK75871.1|2696587_2699188_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK75872.1|2700143_2700776_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AUK75873.1|2701169_2701928_+	hypothetical protein	NA	NA	NA	NA	NA
AUK75874.1|2701924_2703127_+	cardiolipin synthase B	NA	NA	NA	NA	NA
AUK75875.1|2703123_2703324_+	hypothetical protein	NA	NA	NA	NA	NA
AUK75876.1|2703314_2704265_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK75877.1|2705172_2706318_+	hypothetical protein	NA	NA	NA	NA	NA
AUK75878.1|2706304_2707060_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK75879.1|2707176_2707356_+	hypothetical protein	NA	NA	NA	NA	NA
AUK75880.1|2707421_2708372_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	2930220	3065373	4102575	tRNA,transposase	uncultured_Mediterranean_phage(15.79%)	109	NA	NA
AUK76056.1|2930220_2931123_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76057.1|2931169_2931724_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
AUK76058.1|2931791_2932637_-	phosphatase	NA	NA	NA	NA	NA
AUK76059.1|2932706_2933675_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK76060.1|2937370_2941264_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76061.1|2941587_2941764_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76062.1|2942032_2945263_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK76063.1|2945544_2946372_-	DNAase	NA	NA	NA	NA	NA
AUK76064.1|2946405_2947101_-	lipoprotein releasing system, ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
AUK77226.1|2947093_2948326_-	cell division protein FtsX	NA	NA	NA	NA	NA
AUK76065.1|2948419_2949361_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77227.1|2949342_2951043_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
AUK76066.1|2951317_2952250_+	peptide chain release factor 2	NA	NA	NA	NA	NA
AUK76067.1|2952279_2953035_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK76068.1|2953041_2954562_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
AUK76069.1|2954604_2954907_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76070.1|2954903_2955536_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK76071.1|2955614_2957480_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AUK76072.1|2957476_2958292_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AUK76073.1|2958299_2959415_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK76074.1|2959825_2960068_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76075.1|2960319_2961198_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK76076.1|2961197_2962022_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AUK76077.1|2962189_2963092_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76078.1|2963352_2966202_+	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AUK76079.1|2966183_2966912_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76080.1|2967052_2968516_-	hypothetical protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AUK76081.1|2968512_2968884_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76082.1|2968901_2970215_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76083.1|2970251_2970710_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76084.1|2970822_2971773_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76085.1|2971769_2972747_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AUK76086.1|2972922_2973909_+	homoserine kinase	NA	NA	NA	NA	NA
AUK76087.1|2973952_2974753_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76088.1|2975555_2976458_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76089.1|2976657_2977260_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76090.1|2977278_2977911_+	rRNA methyltransferase	NA	NA	NA	NA	NA
AUK76091.1|2978148_2980035_+	cell division protein FtsH	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AUK76092.1|2980053_2980896_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AUK76093.1|2980892_2982251_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AUK76094.1|2982471_2983266_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK76095.1|2983496_2984990_-	exopolyphosphatase	NA	NA	NA	NA	NA
AUK76096.1|2985225_2987307_+	RNA degradosome polyphosphate kinase	NA	NA	NA	NA	NA
AUK76097.1|2987501_2988542_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AUK76098.1|2988676_2989693_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AUK76099.1|2989735_2990572_+	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AUK77228.1|2990616_2991393_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AUK76100.1|2991760_2992711_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76101.1|2992737_2993202_-	barstar family protein 2	NA	NA	NA	NA	NA
AUK76102.1|2996812_2997685_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76103.1|2997727_2998882_+	aminotransferase	NA	NA	NA	NA	NA
AUK76104.1|2998916_2999747_-	lytic transglycosylase	NA	NA	NA	NA	NA
AUK76105.1|2999830_3001375_+	3-octaprenyl-4-hydroxybenzoate decarboxylase	NA	NA	NA	NA	NA
AUK76106.1|3001417_3001777_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76107.1|3001778_3002192_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76108.1|3002232_3002550_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77229.1|3002634_3003348_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77230.1|3003614_3005036_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
AUK76109.1|3006388_3007291_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77231.1|3009231_3010248_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK77232.1|3010584_3011226_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AUK76110.1|3011316_3012753_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AUK76111.1|3012910_3013984_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AUK76112.1|3013980_3015117_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AUK76113.1|3015261_3015606_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AUK76114.1|3015672_3017553_+	protein-export membrane protein SecD	NA	NA	NA	NA	NA
AUK76115.1|3017602_3018538_+	protein-export membrane protein SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AUK77233.1|3018870_3019887_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK76116.1|3020824_3022252_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AUK76117.1|3022248_3023271_+	phosphate starvation-inducible protein PhoH	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AUK76118.1|3023260_3023734_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
AUK76119.1|3023874_3024762_+	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
AUK76120.1|3024758_3026402_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AUK77234.1|3026398_3027406_-	aldo/keto reductase	NA	NA	NA	NA	NA
AUK77235.1|3028236_3029253_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK76121.1|3029352_3029985_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
AUK76122.1|3029993_3030383_-	two-component system response regulator	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AUK76123.1|3030435_3031488_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AUK76124.1|3032351_3034058_-	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AUK76125.1|3034131_3034632_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AUK76126.1|3034646_3036704_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
AUK76127.1|3036730_3037024_-	two-component system response regulator	NA	NA	NA	NA	NA
AUK76128.1|3037125_3038073_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
AUK76129.1|3038085_3038961_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AUK76130.1|3039081_3039642_-	transcriptional regulator FlhC	NA	NA	NA	NA	NA
AUK76131.1|3039676_3040000_-	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AUK76132.1|3040435_3041173_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AUK76133.1|3041471_3042374_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76134.1|3042665_3042929_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
AUK76135.1|3043002_3043284_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77236.1|3043300_3044143_-	peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AUK76136.1|3044157_3044493_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76137.1|3044546_3045197_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AUK76138.1|3046877_3047822_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76139.1|3047867_3048185_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AUK76140.1|3048187_3049126_-	cytochrome C biogenesis protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AUK76141.1|3049303_3049789_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK76142.1|3049807_3050356_+	damage-inducible protein DinB	NA	NA	NA	NA	NA
AUK76143.1|3051869_3052511_+	glutathione S-transferase	NA	NA	NA	NA	NA
AUK77237.1|3052665_3055014_+	3-hydroxyalkanoate synthetase	NA	NA	NA	NA	NA
AUK76144.1|3055010_3055949_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
AUK76145.1|3055974_3057165_+	acetate kinase	NA	NA	NA	NA	NA
AUK76146.1|3057161_3057935_+	enoyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA	NA
AUK76147.1|3057964_3059158_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
AUK76148.1|3059275_3060286_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AUK76149.1|3060303_3062340_-	transketolase	NA	NA	NA	NA	NA
AUK76150.1|3062534_3063275_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AUK76151.1|3063421_3064324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76152.1|3064470_3065373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	3089177	3227921	4102575	transposase,holin	Bacillus_virus(11.76%)	121	NA	NA
AUK77239.1|3089177_3090194_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK76167.1|3090331_3091381_-	aldo/keto reductase	NA	NA	NA	NA	NA
AUK76168.1|3091533_3092436_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76169.1|3092531_3093218_-	coenzyme A pyrophosphatase	NA	NA	NA	NA	NA
AUK76170.1|3093467_3093848_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
AUK76171.1|3094153_3095026_+	multidrug DMT transporter permease	NA	NA	NA	NA	NA
AUK76172.1|3095033_3095414_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76173.1|3095567_3096842_-	radical SAM protein	NA	NA	NA	NA	NA
AUK77240.1|3098329_3099238_-	sulfate adenylyltransferase small subunit	NA	NA	NA	NA	NA
AUK76174.1|3100035_3101100_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
AUK76175.1|3101124_3101907_-	sulfate ABC transporter permease subunit CysW	NA	NA	NA	NA	NA
AUK76176.1|3102021_3102696_-	sulfate ABC transporter permease subunit CysT	NA	NA	NA	NA	NA
AUK76177.1|3102717_3102927_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76178.1|3102942_3103977_-	sulfate transporter subunit	NA	NA	NA	NA	NA
AUK76179.1|3104166_3104808_-	peroxidase	NA	NA	NA	NA	NA
AUK76180.1|3104890_3106717_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK76181.1|3106960_3107890_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
AUK76182.1|3107889_3108639_-	electron transporter RnfB	NA	NA	NA	NA	NA
AUK76183.1|3108710_3109625_-	deacetylase	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
AUK76184.1|3109644_3110790_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
AUK76185.1|3110850_3111762_-	cysteine synthase B	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
AUK76186.1|3111842_3112793_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77241.1|3112891_3113221_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76187.1|3113510_3114500_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AUK76188.1|3114496_3115438_-	hypothetical protein	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AUK76189.1|3115434_3116655_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AUK76190.1|3116697_3117012_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76191.1|3117203_3117563_-	integration host factor subunit beta	NA	NA	NA	NA	NA
AUK76192.1|3117564_3119280_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
AUK76193.1|3119467_3120139_-	cytidylate kinase	NA	NA	NA	NA	NA
AUK76194.1|3120153_3121482_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AUK76195.1|3121478_3122378_-	prephenate dehydrogenase	NA	NA	NA	NA	NA
AUK76196.1|3122464_3123550_-	chorismate mutase	NA	NA	NA	NA	NA
AUK77242.1|3123542_3124673_-	phosphoserine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
AUK76197.1|3124675_3127357_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AUK76198.1|3127727_3128309_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76199.1|3128434_3129160_+	bifunctional 3-demethylubiquinol 3-O-methyltransferase/2-polyprenyl-6-hydroxyphenol methylase	NA	NA	NA	NA	NA
AUK76200.1|3129156_3129834_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AUK76201.1|3130049_3131231_+	MFS transporter	NA	NA	NA	NA	NA
AUK76202.1|3132003_3132186_+	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AUK76203.1|3132215_3133166_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77243.1|3133295_3133688_+	hypothetical protein	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AUK76204.1|3133964_3134855_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.3e-05
AUK76205.1|3135000_3135975_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76206.1|3135971_3136874_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76207.1|3137020_3138106_-	DNA polymerase IV	NA	NA	NA	NA	NA
AUK76208.1|3138203_3138614_+	phenylacetic acid degradation protein	NA	NA	NA	NA	NA
AUK76209.1|3139229_3141143_+	S9 family peptidase	NA	NA	NA	NA	NA
AUK76210.1|3141278_3143891_+	penicillin-binding protein	NA	NA	NA	NA	NA
AUK76211.1|3143892_3144627_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AUK76212.1|3144790_3145972_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76213.1|3145968_3146181_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76214.1|3146177_3147158_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AUK77244.1|3147203_3148031_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AUK77245.1|3148180_3149995_+	metal ABC transporter permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AUK76215.1|3150049_3150433_+	Rieske (2Fe-2S) protein	NA	NA	NA	NA	NA
AUK76216.1|3150429_3151332_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76217.1|3151492_3151744_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76218.1|3151937_3152153_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76219.1|3152249_3153368_-	N-acylglucosamine 2-epimerase	NA	NA	NA	NA	NA
AUK76220.1|3153487_3153700_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76221.1|3153859_3154069_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76222.1|3154133_3155084_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76223.1|3156260_3157631_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AUK76224.1|3157663_3158455_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK76225.1|3158467_3159523_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76226.1|3159548_3160424_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76227.1|3160529_3160778_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76228.1|3160812_3162267_-	carboxylase	NA	NA	NA	NA	NA
AUK76229.1|3162263_3162785_-	acetyl-CoA carboxylase, biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AUK76230.1|3162813_3164166_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76231.1|3164389_3167278_-	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
AUK76232.1|3169422_3170724_+	phospholipase	NA	NA	NA	NA	NA
AUK76233.1|3170738_3171455_-	flagellar brake protein	NA	NA	NA	NA	NA
AUK76234.1|3171736_3172417_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76235.1|3172428_3172596_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76236.1|3172944_3173604_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AUK76237.1|3174002_3175835_+	multidrug ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AUK76238.1|3175831_3176782_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76239.1|3176863_3177475_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76240.1|3177945_3179661_+	acetolactate synthase, large subunit, biosynthetic type	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
AUK76241.1|3179671_3180163_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
AUK76242.1|3180235_3181252_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AUK76243.1|3181419_3182199_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AUK77246.1|3182217_3182745_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76244.1|3183038_3183308_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
AUK76245.1|3183398_3185558_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
AUK76246.1|3185678_3186398_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76247.1|3186394_3187345_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76248.1|3187485_3188703_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
AUK76249.1|3188696_3189308_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AUK76250.1|3189941_3190919_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AUK76251.1|3191062_3191809_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
AUK76252.1|3191830_3192277_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AUK76253.1|3193064_3195296_+|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AUK76254.1|3195318_3196119_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK76255.1|3196400_3197633_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AUK76256.1|3197743_3198733_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76257.1|3198763_3200152_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76258.1|3200199_3200574_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76259.1|3200564_3201692_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AUK76260.1|3201750_3202734_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK77247.1|3202930_3203947_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK76261.1|3204143_3204968_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK76262.1|3205045_3205936_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK76263.1|3206139_3207291_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AUK76264.1|3207324_3208326_+	peptidase M14	NA	NA	NA	NA	NA
AUK76265.1|3208454_3209426_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76266.1|3209450_3211535_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AUK76267.1|3211601_3212594_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76268.1|3212702_3214037_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76269.1|3214062_3216075_-	hydantoin utilization protein B	NA	NA	NA	NA	NA
AUK77248.1|3216071_3218120_-	hydantoinase	NA	NA	NA	NA	NA
AUK76270.1|3218223_3218871_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK77249.1|3219053_3219506_+	azurin	NA	NA	NA	NA	NA
AUK76271.1|3219549_3220221_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUK76272.1|3220235_3221729_-	RND transporter	NA	NA	NA	NA	NA
AUK76273.1|3221725_3224839_-	multidrug efflux protein	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AUK76274.1|3224851_3225958_-	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AUK76275.1|3226081_3226750_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK76276.1|3226970_3227921_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	3268453	3341567	4102575	transposase	Klosneuvirus(16.67%)	59	NA	NA
AUK76310.1|3268453_3269356_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76311.1|3269352_3270372_-	fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AUK76312.1|3270381_3273090_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AUK76313.1|3273237_3273894_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76314.1|3273992_3274943_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77253.1|3275090_3275984_+	mechanosensitive ion channel protein	NA	NA	NA	NA	NA
AUK76315.1|3276183_3277878_+	acetolactate synthase	NA	NA	NA	NA	NA
AUK76316.1|3277912_3278839_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77254.1|3278907_3280005_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76317.1|3280023_3280887_+	ABC transporter	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AUK76318.1|3280898_3281681_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK76319.1|3281677_3282796_+	deacylase	NA	NA	NA	NA	NA
AUK76320.1|3282792_3284325_+	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AUK76321.1|3284365_3285373_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AUK77255.1|3285604_3286240_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK76322.1|3286255_3287278_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK76323.1|3287594_3288329_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK76324.1|3288413_3290159_+	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AUK76325.1|3290155_3290908_+	3-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK76326.1|3290952_3291909_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK76327.1|3291997_3292564_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76328.1|3292571_3293432_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AUK76329.1|3293461_3294190_-	arginine transporter ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
AUK76330.1|3294221_3294905_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK76331.1|3295102_3295336_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76332.1|3295742_3296657_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK76333.1|3296721_3297630_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK76334.1|3297720_3299145_-	CyaE	NA	NA	NA	NA	NA
AUK76335.1|3299146_3300469_-	hemolysin D	NA	NA	NA	NA	NA
AUK76336.1|3300465_3302604_-	peptidase C39	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AUK76337.1|3302681_3307904_-	hemolysin	NA	NA	NA	NA	NA
AUK77256.1|3307988_3308168_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76338.1|3308280_3308838_+	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AUK76339.1|3308853_3310335_-	succinate-semialdehyde dehydrogenase (NADP(+))	NA	NA	NA	NA	NA
AUK76340.1|3312505_3313843_-	amino acid deaminase	NA	NA	NA	NA	NA
AUK76341.1|3313877_3315875_-	hydantoin utilization protein B	NA	NA	NA	NA	NA
AUK76342.1|3315892_3317941_-	hydantoinase	NA	NA	NA	NA	NA
AUK76343.1|3318071_3318938_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK76344.1|3319206_3320172_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AUK76345.1|3320286_3321435_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AUK76346.1|3321859_3322171_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
AUK76347.1|3322204_3322465_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
AUK76348.1|3322614_3323748_+	GTPase ObgE	NA	NA	NA	NA	NA
AUK76349.1|3323818_3324955_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AUK76350.1|3325120_3325915_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK76351.1|3325998_3326421_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK76352.1|3326536_3327487_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77257.1|3327669_3328017_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK76353.1|3328089_3330285_+	DNA methylase	NA	NA	NA	NA	NA
AUK76354.1|3330554_3331457_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76355.1|3331569_3331995_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76356.1|3332072_3333044_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77258.1|3333163_3335608_+	ligand-gated channel	NA	NA	NA	NA	NA
AUK76357.1|3335623_3336214_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AUK76358.1|3336260_3336416_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76359.1|3336457_3337360_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76360.1|3337565_3338831_-	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AUK76361.1|3338864_3339962_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AUK76362.1|3340616_3341567_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	3352854	3452967	4102575	tRNA,transposase,tail,terminase	uncultured_Caudovirales_phage(14.29%)	108	NA	NA
AUK76373.1|3352854_3353805_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76374.1|3354536_3354914_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
AUK76375.1|3354898_3355600_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76376.1|3355743_3356436_-	mannose-1-phosphate guanylyltransferase	NA	NA	NA	NA	NA
AUK77259.1|3356435_3357476_-	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AUK76377.1|3357654_3360021_+	LPS biosynthesis protein	NA	NA	NA	NA	NA
AUK76378.1|3360017_3361577_+	molecular chaperone SurA	NA	NA	NA	NA	NA
AUK76379.1|3361601_3362399_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase	NA	NA	NA	NA	NA
AUK76380.1|3362430_3363576_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
AUK76381.1|3363680_3365123_+	pyruvate kinase	NA	NA	NA	NA	NA
AUK76382.1|3365125_3366355_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76383.1|3368492_3369443_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76384.1|3370572_3371130_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76385.1|3371105_3371456_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76386.1|3371624_3372419_-	iron ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AUK76387.1|3372415_3373465_-	iron-siderophore ABC transporter permease	NA	NA	NA	NA	NA
AUK76388.1|3373464_3374154_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AUK76389.1|3374240_3374738_-	peptidoglycan-associated lipoprotein	NA	NA	NA	NA	NA
AUK76390.1|3374769_3376086_-	Tol-Pal system beta propeller repeat protein TolB	NA	NA	NA	NA	NA
AUK76391.1|3376102_3377077_-	protein TolA	NA	NA	NA	NA	NA
AUK76392.1|3377113_3377572_-	protein TolR	NA	NA	NA	NA	NA
AUK76393.1|3377571_3378252_-	protein TolQ	NA	NA	NA	NA	NA
AUK76394.1|3378254_3378683_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AUK76395.1|3378735_3380466_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AUK76396.1|3380531_3381104_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AUK76397.1|3381084_3381771_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AUK76398.1|3381830_3382199_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76399.1|3382126_3382798_+	hypothetical protein	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AUK76400.1|3383126_3383348_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76401.1|3383347_3383629_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76402.1|3383625_3384141_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76403.1|3384140_3384692_-	lysozyme	NA	NA	NA	NA	NA
AUK76404.1|3384670_3384913_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76405.1|3384917_3385730_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76406.1|3385729_3385993_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76407.1|3386211_3386628_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76408.1|3386632_3390589_-	hypothetical protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AUK76409.1|3390581_3390971_-	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AUK76410.1|3390967_3391501_-	hypothetical protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AUK76411.1|3391568_3391928_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76412.1|3391937_3394550_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AUK76413.1|3394575_3394866_-	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AUK76414.1|3394883_3395213_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AUK76415.1|3395222_3395741_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AUK76416.1|3395995_3396496_-	hypothetical protein	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AUK76417.1|3396503_3396926_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76418.1|3396922_3397321_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AUK76419.1|3397317_3397713_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AUK76420.1|3397712_3397913_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76421.1|3397914_3398397_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AUK76422.1|3398459_3398711_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76423.1|3399385_3400336_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76424.1|3400764_3401367_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AUK76425.1|3401489_3401732_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AUK76426.1|3401737_3402850_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	49.7	2.1e-102
AUK76427.1|3402821_3404240_-	hypothetical protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AUK76428.1|3404242_3405520_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AUK76429.1|3405506_3405992_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
AUK76430.1|3406631_3407534_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76431.1|3407599_3407821_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76432.1|3407835_3408534_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76433.1|3408526_3408847_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77260.1|3409326_3409938_+	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AUK76434.1|3410009_3410216_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76435.1|3410467_3411370_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76436.1|3411516_3412590_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76437.1|3412757_3413552_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK76438.1|3413591_3414116_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76439.1|3414108_3415851_-	sulfite reductase	NA	NA	NA	NA	NA
AUK76440.1|3416060_3416819_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AUK76441.1|3416821_3417529_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AUK76442.1|3417545_3418427_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK76443.1|3418437_3419196_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK77261.1|3419164_3419920_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76444.1|3419989_3421408_+	amidase	NA	NA	NA	NA	NA
AUK76445.1|3421429_3422080_-	carbonate dehydratase	NA	NA	NA	NA	NA
AUK76446.1|3422213_3422549_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76447.1|3422685_3423588_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76448.1|3423664_3425485_+	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AUK76449.1|3425489_3426563_-	Holliday junction DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AUK76450.1|3426685_3427654_+	serine dehydratase	NA	NA	NA	NA	NA
AUK76451.1|3427727_3428639_+	NAD-dependent dehydratase	NA	NA	NA	NA	NA
AUK76452.1|3428657_3429230_-	Holliday junction DNA helicase RuvA	NA	NA	NA	NA	NA
AUK76453.1|3429310_3429859_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AUK76454.1|3429858_3431448_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AUK76455.1|3431517_3431757_-	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AUK76456.1|3431797_3432823_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AUK76457.1|3432888_3434061_-	monooxygenase	NA	NA	NA	NA	NA
AUK76458.1|3434166_3434619_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76459.1|3434628_3435969_-	Xaa-Pro aminopeptidase	NA	NA	NA	NA	NA
AUK76460.1|3436285_3437323_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76461.1|3437704_3438064_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77262.1|3438147_3439089_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76462.1|3439211_3440114_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76463.1|3440407_3441502_+	porin	NA	NA	NA	NA	NA
AUK77263.1|3441592_3442465_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76464.1|3442486_3443326_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AUK76465.1|3443401_3444919_+	peptidase	NA	NA	NA	NA	NA
AUK76466.1|3445015_3446116_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK76467.1|3446132_3446555_-	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AUK76468.1|3446577_3446790_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76469.1|3446836_3447757_-	branched chain amino acid aminotransferase	NA	NA	NA	NA	NA
AUK76470.1|3447939_3448689_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76471.1|3448691_3449021_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76472.1|3449227_3450661_+	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AUK76473.1|3450672_3451056_-	thiol reductase thioredoxin	NA	NA	NA	NA	NA
AUK76474.1|3451117_3451918_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76475.1|3452016_3452967_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	3613637	3668611	4102575	transposase	Lake_Baikal_phage(20.0%)	46	NA	NA
AUK76615.1|3613637_3614588_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76616.1|3614704_3615772_+	choloylglycine hydrolase	NA	NA	NA	NA	NA
AUK76617.1|3615847_3618976_-	ribonuclease E/G	NA	NA	NA	NA	NA
AUK76618.1|3619543_3620449_+	RNA pseudouridine synthase	NA	NA	NA	NA	NA
AUK76619.1|3620451_3621123_+	HAD family hydrolase	NA	NA	NA	NA	NA
AUK76620.1|3621279_3622239_+	mononuclear molybdenum enzyme YedY	NA	NA	NA	NA	NA
AUK76621.1|3622246_3622909_+	sulfoxide reductase heme-binding subunit YedZ	NA	NA	NA	NA	NA
AUK76622.1|3622905_3623856_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76623.1|3623977_3625231_+	carnitine dehydratase	NA	NA	NA	NA	NA
AUK76624.1|3625208_3626171_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK76625.1|3626302_3626797_+	dehydratase	NA	NA	NA	NA	NA
AUK76626.1|3626796_3628029_+	mesaconyl-CoA isomerase	NA	NA	NA	NA	NA
AUK76627.1|3628163_3628388_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76628.1|3628457_3628688_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76629.1|3628774_3629056_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76630.1|3629042_3630029_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK76631.1|3630172_3630577_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76632.1|3630718_3634105_+	molybdopterin oxidoreductase	NA	NA	NA	NA	NA
AUK76633.1|3634135_3635599_+	Short chain fatty acid transporter	NA	NA	NA	NA	NA
AUK77272.1|3635619_3637236_+	1-pyrroline-5-carboxylate dehydrogenase	NA	NA	NA	NA	NA
AUK76634.1|3637321_3637981_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK76635.1|3638010_3638451_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76636.1|3638961_3639165_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
AUK76637.1|3639340_3640246_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK76638.1|3640392_3641295_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76639.1|3641393_3642344_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76640.1|3644125_3645319_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AUK76641.1|3645384_3646413_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK76642.1|3646439_3647612_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK76643.1|3647737_3648715_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK76644.1|3648725_3649697_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK76645.1|3649763_3650549_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK76646.1|3650541_3651774_-	CoA transferase	NA	NA	NA	NA	NA
AUK76647.1|3651969_3652725_-	hypothetical protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AUK76648.1|3652835_3653354_+	methyltransferase	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AUK77273.1|3655142_3656543_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK76649.1|3656642_3656987_+	TIGR01244 family protein	NA	NA	NA	NA	NA
AUK76650.1|3657075_3657546_+	universal stress protein	NA	NA	NA	NA	NA
AUK76651.1|3657956_3658355_+	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AUK76652.1|3658486_3659389_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76653.1|3661881_3662616_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AUK76654.1|3663025_3663205_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77274.1|3663395_3664709_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AUK76655.1|3664724_3666236_-	TRAP ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK76656.1|3666232_3667438_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
AUK76657.1|3667633_3668611_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	3758424	3812619	4102575	protease,transposase	Paramecium_bursaria_Chlorella_virus(14.29%)	53	NA	NA
AUK76746.1|3758424_3759327_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76747.1|3759497_3760226_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
AUK76748.1|3760322_3761501_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
AUK76749.1|3761497_3762331_+	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA	NA	NA	NA	NA
AUK76750.1|3762367_3763108_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AUK76751.1|3763227_3764403_-	dihydroorotase	NA	NA	NA	NA	NA
AUK76752.1|3764399_3765353_-	aspartate carbamoyltransferase	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
AUK76753.1|3765366_3765768_-	Holliday junction DNA helicase RuvA	NA	NA	NA	NA	NA
AUK77279.1|3765760_3766366_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77280.1|3766453_3766618_-	rubredoxin	NA	NA	NA	NA	NA
AUK76754.1|3766734_3767583_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AUK76755.1|3767579_3768233_+	thiamine-phosphate diphosphorylase	NA	NA	NA	NA	NA
AUK76756.1|3768249_3769533_+	glutamate-1-semialdehyde-2,1-aminomutase	NA	NA	NA	NA	NA
AUK76757.1|3769772_3771398_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76758.1|3771491_3771893_-	enamine deaminase RidA	NA	NA	NA	NA	NA
AUK76759.1|3771917_3772352_-	4-hydroxybenzoyl-CoA thioesterase	NA	NA	NA	NA	NA
AUK76760.1|3772353_3774003_-	2-aminobenzoate-CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
AUK76761.1|3774043_3775213_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK76762.1|3775215_3776079_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK76763.1|3779442_3780147_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
AUK76764.1|3780140_3780935_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
AUK76765.1|3780931_3781897_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK76766.1|3781900_3782821_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK76767.1|3782917_3784081_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK76768.1|3784303_3785194_+	esterase	NA	NA	NA	NA	NA
AUK76769.1|3785197_3785701_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUK76770.1|3785743_3786742_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76771.1|3786738_3787689_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76772.1|3787804_3788065_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76773.1|3788304_3789207_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76774.1|3789266_3789827_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
AUK76775.1|3791329_3792211_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK76776.1|3792324_3793527_+	MFS transporter	NA	NA	NA	NA	NA
AUK76777.1|3793655_3795515_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AUK76778.1|3795592_3796402_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK76779.1|3796472_3797474_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76780.1|3797505_3798366_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK76781.1|3798565_3799570_+	acetylesterase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
AUK76782.1|3799566_3801153_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK76783.1|3801161_3802088_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AUK76784.1|3802110_3802737_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76785.1|3802835_3803786_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77281.1|3803782_3804919_-	2-alkenal reductase	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AUK76786.1|3804972_3805749_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AUK76787.1|3805773_3806232_-	large-conductance mechanosensitive channel protein	NA	NA	NA	NA	NA
AUK76788.1|3806371_3807013_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AUK76789.1|3807077_3808460_+	cytochrome b	NA	NA	NA	NA	NA
AUK77282.1|3808485_3809334_+	cytochrome c1	NA	NA	NA	NA	NA
AUK76790.1|3809492_3810104_+	glutathione S-transferase	NA	NA	NA	NA	NA
AUK76791.1|3810113_3810563_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AUK76792.1|3811081_3811222_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76793.1|3811229_3811391_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AUK76794.1|3811716_3812619_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	3823235	3884076	4102575	tRNA,transposase	uncultured_Caudovirales_phage(28.57%)	52	NA	NA
AUK76804.1|3823235_3824138_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76805.1|3824916_3825897_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK76806.1|3825910_3827035_+	carnitine dehydratase	NA	NA	NA	NA	NA
AUK76807.1|3827042_3828797_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AUK76808.1|3828903_3829803_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK76809.1|3829867_3830851_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK76810.1|3830986_3831967_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76811.1|3831983_3833375_-	fumarate hydratase, class II	NA	NA	NA	NA	NA
AUK76812.1|3833526_3834063_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AUK76813.1|3833993_3835379_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
AUK77283.1|3835521_3836142_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76814.1|3836246_3838136_+	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AUK76815.1|3838132_3839074_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AUK76816.1|3839179_3840229_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AUK76817.1|3840481_3841183_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AUK76818.1|3841179_3841878_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76819.1|3841878_3843234_+	poly(A) polymerase	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AUK76820.1|3843230_3843722_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AUK76821.1|3843740_3844697_-	hypothetical protein	NA	NA	NA	NA	NA
AUK77284.1|3846107_3847367_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76822.1|3848380_3849424_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK76823.1|3849467_3850211_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK76824.1|3850227_3850983_-	gamma-hydroxybutyrate dehydrogenase	NA	D2K0C8	Staphylococcus_phage	55.0	4.6e-32
AUK76825.1|3851232_3851643_-	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AUK76826.1|3852592_3853390_+	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AUK76827.1|3853488_3854439_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76828.1|3854435_3855386_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76829.1|3855472_3856375_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76830.1|3856537_3857539_-	restriction endonuclease	NA	NA	NA	NA	NA
AUK76831.1|3857629_3858196_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
AUK76832.1|3858514_3860428_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
AUK76833.1|3860469_3861900_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AUK76834.1|3862012_3863425_-	hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
AUK76835.1|3863441_3864137_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK76836.1|3864355_3865306_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76837.1|3865330_3866230_-	virginiamycin B lyase	NA	NA	NA	NA	NA
AUK76838.1|3866384_3866933_+	GNAT family N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AUK76839.1|3866971_3867691_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AUK76840.1|3867861_3870705_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AUK76841.1|3871298_3874094_+	peptidase S8	NA	NA	NA	NA	NA
AUK76842.1|3874551_3875484_+	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK76843.1|3875595_3876945_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AUK76844.1|3876976_3877702_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK77285.1|3877752_3878535_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK76845.1|3878733_3879420_+	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AUK76846.1|3879419_3880064_+	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AUK76847.1|3880120_3880396_+	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AUK76848.1|3880421_3880718_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76849.1|3880763_3881543_+	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AUK77286.1|3881548_3882589_+	cyclase	NA	NA	NA	NA	NA
AUK76850.1|3882693_3883017_-	PsiF repeat family protein	NA	NA	NA	NA	NA
AUK76851.1|3883173_3884076_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	3953652	4012126	4102575	tRNA,transposase	Planktothrix_phage(22.22%)	57	NA	NA
AUK76907.1|3953652_3954603_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76908.1|3955869_3956748_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK76909.1|3956775_3957060_-	bacterioferritin	NA	NA	NA	NA	NA
AUK76910.1|3957170_3958610_-	RNA polymerase sigma-54 factor	NA	NA	NA	NA	NA
AUK76911.1|3958608_3959256_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76912.1|3959682_3961383_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
AUK76913.1|3961473_3962739_-	amidase	NA	NA	NA	NA	NA
AUK77291.1|3963025_3963637_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76914.1|3963620_3964010_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76915.1|3964006_3965017_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK76916.1|3965853_3966687_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK76917.1|3966683_3967589_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
AUK76918.1|3967735_3968638_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76919.1|3968738_3969560_+	phosphodiesterase	NA	NA	NA	NA	NA
AUK76920.1|3969665_3970706_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AUK76921.1|3970748_3972041_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK76922.1|3972051_3972927_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK76923.1|3972923_3973724_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK77292.1|3973799_3974816_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK76924.1|3975098_3975416_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76925.1|3975506_3975854_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76926.1|3976141_3977824_+|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AUK76927.1|3977833_3978517_+	cell division protein	NA	NA	NA	NA	NA
AUK76928.1|3978578_3979208_+	thiol:disulfide interchange protein	NA	NA	NA	NA	NA
AUK76929.1|3979289_3980483_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AUK76930.1|3981430_3982333_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76931.1|3982368_3983430_+	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AUK76932.1|3983426_3984323_+	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AUK76933.1|3984380_3984929_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AUK76934.1|3984943_3985945_-	lipoyl synthase	NA	NA	NA	NA	NA
AUK76935.1|3986006_3986669_-	octanoyltransferase	NA	NA	NA	NA	NA
AUK76936.1|3986676_3986952_-	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AUK76937.1|3987027_3987894_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AUK77293.1|3987974_3989153_-	peptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	5.8e-66
AUK76938.1|3989363_3990017_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK76939.1|3990046_3990649_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76940.1|3990649_3990871_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76941.1|3990960_3991428_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76942.1|3991581_3992421_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AUK76943.1|3992420_3993551_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK76944.1|3993625_3994492_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AUK76945.1|3994488_3995292_+	pantothenate kinase	NA	NA	NA	NA	NA
AUK76946.1|3995316_3995472_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76947.1|3995488_3996775_-	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AUK76948.1|3996776_3997784_-	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AUK76949.1|3997914_3998967_+	oxidoreductase	NA	NA	NA	NA	NA
AUK76950.1|3998970_3999546_+	N-acetyltransferase	NA	NA	NA	NA	NA
AUK76951.1|3999549_4000650_+	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AUK76952.1|4000657_4001746_+	UDP-N-acetylglucosamine 2-epimerase	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AUK76953.1|4001769_4003029_+	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AUK76954.1|4003091_4004279_+	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AUK76955.1|4004275_4004869_+	sugar transferase	NA	NA	NA	NA	NA
AUK76956.1|4005130_4006237_+	glycosyl transferase	NA	NA	NA	NA	NA
AUK76957.1|4006233_4006938_+	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AUK76958.1|4008285_4010160_+	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AUK77294.1|4010156_4011101_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76959.1|4011175_4012126_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	4019316	4078130	4102575	protease,transposase	Planktothrix_phage(50.0%)	51	NA	NA
AUK76966.1|4019316_4019631_-|transposase	transposase	transposase	NA	NA	NA	NA
AUK76967.1|4019724_4020627_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76968.1|4021096_4022278_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76969.1|4022622_4022877_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76970.1|4022907_4024179_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76971.1|4024213_4025272_+	oxidoreductase	NA	NA	NA	NA	NA
AUK76972.1|4025390_4025693_+	ferredoxin	NA	NA	NA	NA	NA
AUK76973.1|4025705_4026287_+|protease	protease	protease	NA	NA	NA	NA
AUK76974.1|4026343_4027318_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77295.1|4027741_4028683_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76975.1|4028866_4029286_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK76976.1|4029285_4030512_+	serine kinase HipA	NA	NA	NA	NA	NA
AUK76977.1|4031360_4032263_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK76978.1|4032259_4033753_-	RND transporter	NA	NA	NA	NA	NA
AUK76979.1|4033749_4036857_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AUK76980.1|4036853_4039922_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AUK76981.1|4039918_4041169_-	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AUK77296.1|4041349_4042102_-	cell division protein ZapD	NA	NA	NA	NA	NA
AUK77297.1|4042143_4042788_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AUK76982.1|4042796_4043636_-	prepilin peptidase	NA	NA	NA	NA	NA
AUK76983.1|4043876_4044620_+	hypothetical protein	NA	NA	NA	NA	NA
AUK76984.1|4044702_4045050_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AUK76985.1|4045147_4045990_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AUK76986.1|4046034_4046922_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AUK76987.1|4046948_4047137_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AUK76988.1|4047234_4048692_+	MFS transporter	NA	NA	NA	NA	NA
AUK76989.1|4048678_4050205_+	glycerol kinase	NA	NA	NA	NA	NA
AUK76990.1|4050223_4050691_-	hypothetical protein	NA	NA	NA	NA	NA
AUK76991.1|4050690_4051713_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK76992.1|4051833_4052574_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AUK76993.1|4052628_4053729_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK76994.1|4053730_4054921_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK76995.1|4055040_4056057_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AUK76996.1|4056375_4057047_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AUK76997.1|4057043_4057952_+	permease	NA	NA	NA	NA	NA
AUK76998.1|4058163_4058811_+	chemotaxis protein CheD	NA	NA	NA	NA	NA
AUK77298.1|4062671_4063739_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AUK76999.1|4063749_4064559_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK77000.1|4064648_4065422_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUK77001.1|4065652_4066555_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK77002.1|4066566_4067466_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77003.1|4067455_4068610_+	acyl-CoA transferase	NA	NA	NA	NA	NA
AUK77004.1|4068649_4070062_+	hypothetical protein	NA	NA	NA	NA	NA
AUK77005.1|4070084_4071053_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK77006.1|4071054_4071879_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK77007.1|4071875_4072637_+	nitrobenzoate reductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
AUK77008.1|4072717_4073404_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK77009.1|4073601_4074585_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
AUK77010.1|4074581_4075361_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK77299.1|4075448_4076681_+	CoA transferase	NA	NA	NA	NA	NA
AUK77011.1|4077227_4078130_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
