The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP017885	Bordetella pertussis strain J081, complete genome	4107548	0	64055	4107548	transposase,tRNA,protease	Natrialba_phage(12.5%)	57	NA	NA
AUK70036.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AUK70037.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
AUK70038.1|2605_3403_+	chromosome partitioning protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AUK70039.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK70040.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AUK70041.1|5124_5910_+	L-asparaginase	NA	NA	NA	NA	NA
AUK70042.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70043.1|6721_7912_+	translation elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AUK70044.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AUK70045.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AUK70046.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AUK70047.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AUK70048.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AUK70049.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AUK70050.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AUK70051.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AUK73418.1|20126_20531_-	hypothetical protein	NA	NA	NA	NA	NA
AUK70052.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70053.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AUK73419.1|26575_27286_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70054.1|27282_28185_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK70055.1|28314_28614_-	hypothetical protein	NA	NA	NA	NA	NA
AUK70056.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AUK70057.1|29141_30359_-	thiolase	NA	NA	NA	NA	NA
AUK70058.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AUK70059.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK73420.1|32214_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK70060.1|33048_34470_+	2-methylcitrate dehydratase	NA	NA	NA	NA	NA
AUK70061.1|34673_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK70062.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AUK70063.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AUK70064.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AUK70065.1|40060_40600_+	D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AUK70066.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AUK70067.1|41318_42212_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70068.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AUK70069.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AUK70070.1|43346_43526_-	hypothetical protein	NA	NA	NA	NA	NA
AUK70071.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73421.1|45224_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70072.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AUK70073.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70074.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AUK70075.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AUK70076.1|50189_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK70077.1|51134_52391_+	muropeptide transporter AmpG	NA	NA	NA	NA	NA
AUK70078.1|53622_54357_-	glutamate racemase	NA	NA	NA	NA	NA
AUK70079.1|54362_54953_-	arginine transporter ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AUK70080.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK70081.1|55663_56425_-	glutamate ABC transporter permease	NA	NA	NA	NA	NA
AUK70082.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK70083.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK70084.1|59248_60475_-	serine kinase HipA	NA	NA	NA	NA	NA
AUK70085.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK73422.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AUK70086.1|62442_63417_-	hypothetical protein	NA	NA	NA	NA	NA
AUK70087.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
>prophage 2
CP017885	Bordetella pertussis strain J081, complete genome	4107548	69133	122073	4107548	transposase,tRNA	Planktothrix_phage(20.0%)	53	NA	NA
AUK70093.1|69133_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK70094.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AUK70095.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AUK70096.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AUK70097.1|74357_74939_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AUK70098.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AUK70099.1|75280_76123_-	hypothetical protein	NA	NA	NA	NA	NA
AUK70100.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AUK70101.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73423.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK70102.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AUK70103.1|82822_83527_-	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AUK70104.1|83523_84630_-	glycosyl transferase	NA	NA	NA	NA	NA
AUK70105.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AUK70106.1|85481_86669_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AUK70107.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AUK70108.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AUK70109.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AUK70110.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AUK70111.1|90793_91846_-	oxidoreductase	NA	NA	NA	NA	NA
AUK73424.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AUK70112.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AUK70113.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AUK70114.1|94468_95272_-	pantothenate kinase	NA	NA	NA	NA	NA
AUK70115.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AUK70116.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK70117.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AUK70118.1|98332_98800_-	hypothetical protein	NA	NA	NA	NA	NA
AUK70119.1|98889_99111_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70120.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70121.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK73425.1|100607_101786_+	peptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	5.8e-66
AUK70122.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AUK70123.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AUK70124.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AUK70125.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AUK70126.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AUK70127.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AUK70128.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AUK70129.1|107427_108330_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK70130.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AUK70131.1|110552_111182_-	thiol:disulfide interchange protein	NA	NA	NA	NA	NA
AUK70132.1|111243_111927_-	cell division protein	NA	NA	NA	NA	NA
AUK70133.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AUK73426.1|113906_114254_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70134.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70135.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK70136.1|116036_116837_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK70137.1|116833_117709_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK70138.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK70139.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AUK70140.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AUK70141.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP017885	Bordetella pertussis strain J081, complete genome	4107548	232714	307010	4107548	transposase	uncultured_Mediterranean_phage(15.38%)	58	NA	NA
AUK70250.1|232714_233617_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK70251.1|233613_234804_-	voltage-gated potassium channel TrkA	NA	NA	NA	NA	NA
AUK70252.1|234925_235690_-	phytanoyl-CoA dioxygenase	NA	NA	NA	NA	NA
AUK70253.1|235776_236880_-	AI-2E family transporter	NA	NA	NA	NA	NA
AUK70254.1|237071_238088_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK70255.1|238369_238858_+	ADP-heptose synthase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
AUK70256.1|238878_239838_-	hypothetical protein	NA	NA	NA	NA	NA
AUK70257.1|239838_240165_-	hypothetical protein	NA	NA	NA	NA	NA
AUK70258.1|240201_240882_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
AUK70259.1|240943_241795_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AUK70260.1|241791_242589_-	thiazole synthase	NA	NA	NA	NA	NA
AUK70261.1|242692_243586_-	cobalamin-binding protein	NA	NA	NA	NA	NA
AUK70262.1|243597_245487_-	hypothetical protein	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
AUK70263.1|245823_249597_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
AUK70264.1|249593_250496_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK70265.1|250852_251545_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
AUK70266.1|251918_252419_-	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA	NA
AUK70267.1|252525_253446_+	bestrophin	NA	NA	NA	NA	NA
AUK70268.1|253462_253939_-	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AUK73434.1|254041_255883_+	acetolactate synthase, large subunit, biosynthetic type	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
AUK70269.1|255938_256697_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK70270.1|256724_258158_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AUK70271.1|258231_259011_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
AUK70272.1|259023_259857_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK70273.1|259865_260636_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
AUK70274.1|260635_261700_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK70275.1|261851_264479_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
AUK70276.1|264542_267164_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70277.1|268091_268550_-	hypothetical protein	NA	NA	NA	NA	NA
AUK70278.1|268828_271072_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AUK70279.1|271268_273293_-	C4-dicarboxylate ABC transporter permease	NA	NA	NA	NA	NA
AUK70280.1|273416_274379_-	immunogenic protein	NA	NA	NA	NA	NA
AUK70281.1|274590_275730_+	alanine racemase	NA	NA	NA	NA	NA
AUK70282.1|275752_276718_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK70283.1|276913_278104_+	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
AUK70284.1|278117_278363_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70285.1|278391_280413_-	3-methylcrotonyl-CoA carboxylase	NA	NA	NA	NA	NA
AUK73435.1|280459_282067_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
AUK70286.1|282167_283337_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AUK70287.1|286218_287169_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK70288.1|287192_288251_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AUK70289.1|288325_288700_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AUK70290.1|288913_289258_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70291.1|289254_290205_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK70292.1|291761_292607_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK70293.1|292694_293858_-	alpha-hydroxy-acid oxidizing enzyme	NA	NA	NA	NA	NA
AUK70294.1|293988_294192_-	hypothetical protein	NA	NA	NA	NA	NA
AUK73436.1|294276_295248_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK70295.1|295286_296714_-	amidase	NA	NA	NA	NA	NA
AUK70296.1|296833_297625_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK70297.1|297743_300197_-	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
AUK70298.1|300291_301401_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
AUK70299.1|301403_302813_-	chromosomal replication initiation protein DnaA	NA	NA	NA	NA	NA
AUK70300.1|303218_303353_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
AUK70301.1|303448_303820_+	ribonuclease P protein component	NA	NA	NA	NA	NA
AUK70302.1|303816_304089_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
AUK70303.1|304137_305829_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
AUK70304.1|306059_307010_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP017885	Bordetella pertussis strain J081, complete genome	4107548	595154	659617	4107548	transposase,tRNA	Pandoravirus(16.67%)	51	NA	NA
AUK70550.1|595154_596144_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK70551.1|596383_596632_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70552.1|596668_597802_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70553.1|597900_598851_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK70554.1|600073_600976_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK70555.1|600977_601832_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AUK70556.1|601878_602988_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AUK70557.1|602998_603517_-	flavin reductase	NA	NA	NA	NA	NA
AUK70558.1|603546_604179_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AUK70559.1|604250_604910_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AUK70560.1|604906_606046_-	MFS transporter	NA	NA	NA	NA	NA
AUK70561.1|606395_607268_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AUK70562.1|607423_608161_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK70563.1|608163_609795_-	acyl-CoA synthetase	NA	NA	NA	NA	NA
AUK73455.1|609890_610880_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK70564.1|610876_611587_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK70565.1|611682_612699_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK70566.1|612970_613597_-	aminotransferase	NA	NA	NA	NA	NA
AUK70567.1|613652_614780_-	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AUK70568.1|614785_620503_-	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AUK70569.1|620831_621002_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70570.1|621070_622015_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AUK70571.1|622203_623139_+	glycosyl transferase	NA	NA	NA	NA	NA
AUK70572.1|623256_624828_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK70573.1|624907_626116_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK73456.1|626664_627531_+	EamA family transporter	NA	NA	NA	NA	NA
AUK70574.1|629891_630113_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70575.1|630443_631460_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK70576.1|631544_631796_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
AUK70577.1|631799_632615_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
AUK70578.1|632727_633606_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
AUK70579.1|633717_635481_-|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AUK70580.1|635596_636937_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AUK70581.1|638006_639431_-	ATPase	NA	NA	NA	NA	NA
AUK70582.1|639430_640132_-	two-component system response regulator OmpR	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
AUK70583.1|641684_642587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73457.1|642682_643654_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK70584.1|643658_644339_-	hypothetical protein	NA	NA	NA	NA	NA
AUK70585.1|644476_644869_+	osmotically inducible protein OsmC	NA	NA	NA	NA	NA
AUK70586.1|644976_645993_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK70587.1|646232_647018_-	enoyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA	NA
AUK70588.1|647112_648522_-	lytic transglycosylase	NA	NA	NA	NA	NA
AUK70589.1|648532_649333_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AUK70590.1|649353_650124_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUK70591.1|650166_650634_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AUK70592.1|650630_651581_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK70593.1|651662_653183_-	hypothetical protein	NA	NA	NA	NA	NA
AUK70594.1|653161_653494_-	hypothetical protein	NA	NA	NA	NA	NA
AUK70595.1|653529_654408_-	fatty acid desaturase	NA	NA	NA	NA	NA
AUK70596.1|655334_658313_-	hypothetical protein	NA	NA	NA	NA	NA
AUK70597.1|658714_659617_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP017885	Bordetella pertussis strain J081, complete genome	4107548	694426	771735	4107548	integrase,transposase,tRNA,protease	Bacillus_phage(20.0%)	58	741563:741581	761451:761469
AUK70629.1|694426_695329_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK70630.1|695475_696951_-	microcystin degradation protein MlrC	NA	NA	NA	NA	NA
AUK70631.1|698538_699426_-	peptide ABC transporter permease	NA	NA	NA	NA	NA
AUK70632.1|699428_700370_-	peptide ABC transporter	NA	NA	NA	NA	NA
AUK70633.1|700415_701981_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK70634.1|702268_703483_-	methylmalonate-semialdehyde dehydrogenase (acylating)	NA	NA	NA	NA	NA
AUK70635.1|703758_705084_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
AUK70636.1|705266_706724_+	GntR family transcriptional regulator	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
AUK70637.1|706687_707185_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
AUK70638.1|707215_708187_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
AUK73458.1|708239_708671_-	peroxiredoxin	NA	NA	NA	NA	NA
AUK70639.1|708800_709469_+	demethoxyubiquinone hydroxylase family protein	NA	NA	NA	NA	NA
AUK70640.1|710197_711301_+	glycosyl transferase	NA	NA	NA	NA	NA
AUK70641.1|711406_712681_+	Vi polysaccharide biosynthesis protein VipA/TviB	NA	NA	NA	NA	NA
AUK70642.1|712692_713718_+	LPS biosynthesis protein WbpP	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AUK70643.1|713719_715090_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70644.1|715090_716227_+	glycosyl transferase	NA	NA	NA	NA	NA
AUK70645.1|716273_718199_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
AUK70646.1|718195_719317_+	glycosyl transferase	NA	NA	NA	NA	NA
AUK70647.1|719313_720468_+	glycosyl transferase	NA	NA	NA	NA	NA
AUK70648.1|720464_721595_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AUK70649.1|721602_723168_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AUK70650.1|723174_724557_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
AUK70651.1|724835_725447_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70652.1|725538_726954_+	hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
AUK70653.1|726971_727682_+	two-component system response regulator	NA	NA	NA	NA	NA
AUK70654.1|727678_729001_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AUK73459.1|729146_731042_+	sulfatase	NA	NA	NA	NA	NA
AUK70655.1|731167_732481_-	fumarylacetoacetase	NA	NA	NA	NA	NA
AUK70656.1|732589_733888_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
AUK70657.1|734070_734979_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK70658.1|734988_735198_-	hypothetical protein	NA	NA	NA	NA	NA
AUK70659.1|735209_736889_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AUK70660.1|736990_737944_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AUK70661.1|738034_738862_-	DNA-formamidopyrimidine glycosylase	NA	NA	NA	NA	NA
AUK70662.1|738860_740747_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70663.1|740743_741343_+	lipoprotein localization factor LolB	NA	NA	NA	NA	NA
AUK70664.1|741391_742291_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
741563:741581	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AUK70665.1|742499_743450_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
AUK70666.1|743572_744187_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
AUK70667.1|744315_744912_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AUK70668.1|744908_745691_+|protease	CAAX protease	protease	NA	NA	NA	NA
AUK70669.1|745763_746855_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AUK70670.1|747134_748262_+|integrase	integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AUK70671.1|748603_749650_+	cell filamentation protein Fic	NA	NA	NA	NA	NA
AUK73460.1|750160_752917_+	restriction endonuclease	NA	NA	NA	NA	NA
AUK70672.1|752918_755870_+	site-specific DNA-methyltransferase	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AUK70673.1|755885_757097_+	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AUK70674.1|757280_758231_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK70675.1|758745_759003_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70676.1|759231_759477_-	hypothetical protein	NA	NA	NA	NA	NA
AUK70677.1|759546_760458_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70678.1|760539_760824_+	hypothetical protein	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
AUK70679.1|761607_762558_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
761451:761469	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
AUK70680.1|762976_765541_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK70681.1|765585_767439_-	hypothetical protein	NA	NA	NA	NA	NA
AUK70682.1|767771_769343_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK70683.1|770784_771735_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP017885	Bordetella pertussis strain J081, complete genome	4107548	842536	907476	4107548	transposase	Bacillus_phage(18.18%)	58	NA	NA
AUK70747.1|842536_843487_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73466.1|843483_845316_-	multidrug ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AUK70748.1|845714_846374_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AUK70749.1|846722_846890_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70750.1|846901_847582_-	hypothetical protein	NA	NA	NA	NA	NA
AUK70751.1|847863_848580_+	flagellar brake protein	NA	NA	NA	NA	NA
AUK70752.1|848594_849896_-	phospholipase	NA	NA	NA	NA	NA
AUK70753.1|852040_854929_+	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
AUK70754.1|855152_856505_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70755.1|856533_857055_+	acetyl-CoA carboxylase, biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AUK70756.1|857051_858506_+	carboxylase	NA	NA	NA	NA	NA
AUK70757.1|858540_858789_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70758.1|858894_859770_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70759.1|859795_860851_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70760.1|860863_861655_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK70761.1|861687_863058_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AUK70762.1|864234_865185_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK70763.1|865249_865459_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70764.1|865618_865831_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70765.1|865950_867069_+	N-acylglucosamine 2-epimerase	NA	NA	NA	NA	NA
AUK70766.1|867165_867381_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70767.1|867574_867826_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70768.1|867986_868889_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK70769.1|868885_869269_-	Rieske (2Fe-2S) protein	NA	NA	NA	NA	NA
AUK70770.1|869323_871138_-	metal ABC transporter permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AUK73467.1|871287_872115_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AUK70771.1|872160_873141_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AUK70772.1|873137_873350_-	hypothetical protein	NA	NA	NA	NA	NA
AUK70773.1|873346_874528_-	hypothetical protein	NA	NA	NA	NA	NA
AUK70774.1|874691_875426_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AUK70775.1|875427_878040_-	penicillin-binding protein	NA	NA	NA	NA	NA
AUK70776.1|878175_880089_-	S9 family peptidase	NA	NA	NA	NA	NA
AUK70777.1|880704_881115_-	phenylacetic acid degradation protein	NA	NA	NA	NA	NA
AUK70778.1|881212_882298_+	DNA polymerase IV	NA	NA	NA	NA	NA
AUK70779.1|882396_883347_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK70780.1|883343_884318_-	hypothetical protein	NA	NA	NA	NA	NA
AUK70781.1|884463_885354_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.3e-05
AUK73468.1|885630_886023_-	hypothetical protein	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AUK70782.1|886152_887103_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK70783.1|887132_887315_-	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AUK70784.1|888087_889269_-	MFS transporter	NA	NA	NA	NA	NA
AUK70785.1|889484_890162_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AUK70786.1|890158_890884_-	bifunctional 3-demethylubiquinol 3-O-methyltransferase/2-polyprenyl-6-hydroxyphenol methylase	NA	NA	NA	NA	NA
AUK70787.1|891009_891591_-	hypothetical protein	NA	NA	NA	NA	NA
AUK70788.1|891961_894643_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AUK73469.1|894645_895776_+	phosphoserine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
AUK70789.1|895768_896854_+	chorismate mutase	NA	NA	NA	NA	NA
AUK70790.1|896940_897840_+	prephenate dehydrogenase	NA	NA	NA	NA	NA
AUK70791.1|897836_899165_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AUK70792.1|899179_899851_+	cytidylate kinase	NA	NA	NA	NA	NA
AUK70793.1|900038_901754_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AUK70794.1|901755_902115_+	integration host factor subunit beta	NA	NA	NA	NA	NA
AUK70795.1|902306_902621_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70796.1|902663_903884_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AUK70797.1|903880_904822_+	hypothetical protein	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AUK70798.1|904818_905808_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AUK73470.1|906097_906427_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70799.1|906525_907476_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP017885	Bordetella pertussis strain J081, complete genome	4107548	926876	990134	4107548	transposase	Enterococcus_phage(20.0%)	53	NA	NA
AUK70817.1|926876_927827_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK70818.1|927931_928981_+	aldo/keto reductase	NA	NA	NA	NA	NA
AUK70819.1|929118_930135_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK70820.1|931643_932216_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AUK70821.1|932275_933007_+	pseudouridylate synthase	NA	NA	NA	NA	NA
AUK73472.1|933058_933976_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK70822.1|934783_937963_+	multidrug efflux RND transporter permease	NA	NA	NA	NA	NA
AUK70823.1|937959_939342_+	multidrug transporter	NA	NA	NA	NA	NA
AUK70824.1|939411_939663_-	hypothetical protein	NA	NA	NA	NA	NA
AUK70825.1|939808_940423_-	SCO family protein	NA	NA	NA	NA	NA
AUK73473.1|940609_942670_-	oligopeptidase A	NA	NA	NA	NA	NA
AUK70826.1|942799_943651_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AUK70827.1|943647_944274_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AUK70828.1|944270_946025_-	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AUK70829.1|946317_949023_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AUK70830.1|949035_950697_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AUK70831.1|950709_952500_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AUK70832.1|952721_953897_-	flagellin	NA	NA	NA	NA	NA
AUK70833.1|953939_954842_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK70834.1|954988_955891_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK70835.1|956037_956778_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AUK70836.1|956972_959009_+	transketolase	NA	NA	NA	NA	NA
AUK70837.1|959026_960037_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AUK70838.1|960154_961348_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AUK70839.1|961377_962151_-	enoyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA	NA
AUK70840.1|962147_963338_-	acetate kinase	NA	NA	NA	NA	NA
AUK70841.1|963363_964302_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AUK73474.1|964298_966647_-	3-hydroxyalkanoate synthetase	NA	NA	NA	NA	NA
AUK70842.1|966801_967443_-	glutathione S-transferase	NA	NA	NA	NA	NA
AUK70843.1|968956_969505_-	damage-inducible protein DinB	NA	NA	NA	NA	NA
AUK70844.1|969523_970009_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK70845.1|970186_971125_+	cytochrome C biogenesis protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AUK70846.1|971127_971445_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AUK70847.1|971490_972435_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70848.1|974115_974766_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AUK70849.1|974819_975155_+	hypothetical protein	NA	NA	NA	NA	NA
AUK73475.1|975169_976012_+	peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AUK70850.1|976028_976310_-	hypothetical protein	NA	NA	NA	NA	NA
AUK70851.1|976383_976647_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AUK70852.1|976890_977841_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK70853.1|978139_978877_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AUK70854.1|979312_979636_+	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AUK70855.1|979670_980231_+	transcriptional regulator FlhC	NA	NA	NA	NA	NA
AUK70856.1|980351_981227_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AUK70857.1|981239_982187_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
AUK70858.1|982288_982582_+	two-component system response regulator	NA	NA	NA	NA	NA
AUK70859.1|982608_984666_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
AUK70860.1|984680_985181_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
AUK70861.1|985254_986019_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70862.1|986882_987935_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AUK70863.1|987987_988377_+	two-component system response regulator	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AUK70864.1|988385_989018_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
AUK70865.1|989117_990134_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP017885	Bordetella pertussis strain J081, complete genome	4107548	996118	1056180	4107548	transposase,tRNA	uncultured_Mediterranean_phage(37.5%)	48	NA	NA
AUK70870.1|996118_997546_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AUK70871.1|998483_999500_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK70872.1|999832_1000768_-	protein-export membrane protein SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AUK70873.1|1000817_1002698_-	protein-export membrane protein SecD	NA	NA	NA	NA	NA
AUK70874.1|1002764_1003109_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AUK70875.1|1003252_1004389_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AUK70876.1|1004385_1005459_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AUK70877.1|1005616_1007053_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AUK73477.1|1007143_1007785_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AUK70878.1|1008120_1009137_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK70879.1|1009469_1009730_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70880.1|1009709_1010660_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73478.1|1013332_1014754_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
AUK73479.1|1015020_1015734_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70881.1|1015818_1016136_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70882.1|1016176_1016590_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70883.1|1016591_1016951_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70884.1|1016993_1018538_-	3-octaprenyl-4-hydroxybenzoate decarboxylase	NA	NA	NA	NA	NA
AUK70885.1|1018621_1019452_+	lytic transglycosylase	NA	NA	NA	NA	NA
AUK70886.1|1019486_1020641_-	aminotransferase	NA	NA	NA	NA	NA
AUK70887.1|1020683_1021556_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70888.1|1021672_1023961_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AUK70889.1|1025167_1025632_+	barstar family protein 2	NA	NA	NA	NA	NA
AUK70890.1|1025658_1026609_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73480.1|1026976_1027753_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AUK70891.1|1027797_1028634_-	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AUK70892.1|1028676_1029693_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AUK70893.1|1029827_1030868_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AUK70894.1|1031062_1033144_-	RNA degradosome polyphosphate kinase	NA	NA	NA	NA	NA
AUK70895.1|1033379_1034873_+	exopolyphosphatase	NA	NA	NA	NA	NA
AUK70896.1|1035103_1035898_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK70897.1|1036118_1037477_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AUK70898.1|1037473_1038316_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AUK70899.1|1038334_1040221_-	cell division protein FtsH	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AUK70900.1|1040458_1041091_-	rRNA methyltransferase	NA	NA	NA	NA	NA
AUK70901.1|1041109_1041712_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70902.1|1042157_1042559_-	hypothetical protein	NA	NA	NA	NA	NA
AUK70903.1|1043616_1044417_-	hypothetical protein	NA	NA	NA	NA	NA
AUK70904.1|1044460_1045447_-	homoserine kinase	NA	NA	NA	NA	NA
AUK70905.1|1045622_1046600_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AUK70906.1|1046596_1047547_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK70907.1|1047659_1048118_-	hypothetical protein	NA	NA	NA	NA	NA
AUK70908.1|1048154_1049468_-	hypothetical protein	NA	NA	NA	NA	NA
AUK70909.1|1049485_1049857_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70910.1|1049853_1051317_+	hypothetical protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AUK70911.1|1051457_1052186_+	hypothetical protein	NA	NA	NA	NA	NA
AUK70912.1|1052167_1055017_-	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AUK70913.1|1055277_1056180_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP017885	Bordetella pertussis strain J081, complete genome	4107548	1310006	1376458	4107548	transposase	uncultured_Caudovirales_phage(40.0%)	58	NA	NA
AUK71109.1|1310006_1310957_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71110.1|1311022_1311202_-	hypothetical protein	NA	NA	NA	NA	NA
AUK71111.1|1311318_1312074_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK71112.1|1312060_1313206_-	hypothetical protein	NA	NA	NA	NA	NA
AUK71113.1|1314113_1315064_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71114.1|1315054_1315255_-	hypothetical protein	NA	NA	NA	NA	NA
AUK71115.1|1315251_1316454_-	cardiolipin synthase B	NA	NA	NA	NA	NA
AUK71116.1|1316450_1317209_-	hypothetical protein	NA	NA	NA	NA	NA
AUK71117.1|1317602_1318235_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AUK71118.1|1319190_1321791_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK71119.1|1321778_1325198_-	nuclease	NA	NA	NA	NA	NA
AUK71120.1|1325205_1326111_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK71121.1|1326249_1326828_+	NADPH-dependent FMN reductase	NA	NA	NA	NA	NA
AUK71122.1|1326824_1327736_+	CoA ester lyase	NA	NA	NA	NA	NA
AUK73503.1|1327749_1328430_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK71123.1|1328631_1330671_+	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AUK71124.1|1330689_1331676_+	hypothetical protein	NA	NA	NA	NA	NA
AUK71125.1|1331701_1332499_+	citryl-CoA lyase	NA	NA	NA	NA	NA
AUK71126.1|1332495_1333689_+	CoA transferase	NA	NA	NA	NA	NA
AUK71127.1|1333685_1334648_+	hypothetical protein	NA	NA	NA	NA	NA
AUK71128.1|1334665_1335706_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUK71129.1|1335693_1336302_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AUK71130.1|1337890_1338886_+	hypothetical protein	NA	NA	NA	NA	NA
AUK71131.1|1338905_1340084_+	mandelate racemase	NA	NA	NA	NA	NA
AUK71132.1|1340094_1341012_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AUK71133.1|1341067_1342018_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71134.1|1342116_1342887_-	ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AUK71135.1|1342883_1343564_-	cysteine ABC transporter permease	NA	NA	NA	NA	NA
AUK71136.1|1343630_1344419_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK71137.1|1344665_1345682_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK71138.1|1345987_1347142_+	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
AUK71139.1|1351647_1352130_-	flagellar protein FlgN	NA	NA	NA	NA	NA
AUK71140.1|1352147_1352438_-	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AUK73504.1|1352564_1353275_-	flagella basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AUK71141.1|1353458_1353866_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AUK71142.1|1353878_1354298_+	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AUK71143.1|1354345_1355050_+	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AUK71144.1|1355115_1356537_+	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AUK71145.1|1356575_1357340_+	flagellar biosynthesis protein FlgF	NA	NA	NA	NA	NA
AUK71146.1|1357383_1358169_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AUK71147.1|1358168_1358858_+	flagellar basal body L-ring protein	NA	NA	NA	NA	NA
AUK71148.1|1358860_1359994_+	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AUK71149.1|1360011_1361034_+	flagellar rod assembly protein/muramidase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AUK71150.1|1361103_1362750_+	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AUK71151.1|1362783_1364316_+	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AUK71152.1|1364394_1366215_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AUK71153.1|1366335_1367955_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AUK71154.1|1368133_1369576_+	chemotaxis protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AUK71155.1|1369792_1370809_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK71156.1|1370855_1371644_-	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AUK71157.1|1371666_1371936_-	EscS/YscS/HrcS family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AUK73505.1|1371952_1372687_-	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AUK71158.1|1372755_1373097_-	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AUK71159.1|1373107_1373608_-	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AUK71160.1|1373600_1374611_-	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AUK71161.1|1374613_1375186_-	flagellar basal body protein FliL	NA	NA	NA	NA	NA
AUK71162.1|1375327_1375540_-	hypothetical protein	NA	NA	NA	NA	NA
AUK71163.1|1375555_1376458_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP017885	Bordetella pertussis strain J081, complete genome	4107548	1404676	1443266	4107548	transposase,protease	Emiliania_huxleyi_virus(14.29%)	35	NA	NA
AUK71190.1|1404676_1406011_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
AUK71191.1|1406063_1408400_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
AUK73508.1|1408525_1409089_+	outer membrane protein chaperone	NA	NA	NA	NA	NA
AUK71192.1|1409097_1410189_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
AUK71193.1|1410260_1410716_+	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ	NA	NA	NA	NA	NA
AUK71194.1|1410716_1411511_+	acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
AUK71195.1|1411507_1412689_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
AUK71196.1|1412675_1413281_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
AUK71197.1|1413277_1414051_+	RNA methyltransferase	NA	NA	NA	NA	NA
AUK71198.1|1414062_1414890_-	phosphoenolpyruvate synthase regulatory protein	NA	NA	NA	NA	NA
AUK71199.1|1415051_1417415_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
AUK71200.1|1417482_1418202_-	GMP synthase	NA	NA	NA	NA	NA
AUK71201.1|1418325_1418751_+	NfeD-like family protein 1	NA	NA	NA	NA	NA
AUK71202.1|1418785_1419688_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71203.1|1419853_1420780_+	paraslipin	NA	NA	NA	NA	NA
AUK71204.1|1420845_1422003_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AUK71205.1|1421983_1422451_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AUK71206.1|1422646_1423549_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71207.1|1423565_1424000_+	ubiquinone-binding protein	NA	NA	NA	NA	NA
AUK71208.1|1423989_1424340_+	RnfH family protein	NA	NA	NA	NA	NA
AUK71209.1|1424536_1425691_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK71210.1|1425687_1426860_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK71211.1|1426907_1427801_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AUK71212.1|1427846_1428284_+	thioesterase	NA	NA	NA	NA	NA
AUK71213.1|1428343_1429033_+	hypothetical protein	NA	NA	NA	NA	NA
AUK71214.1|1429042_1429945_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71215.1|1430091_1431042_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71216.1|1431140_1432103_-	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
AUK71217.1|1432329_1433484_+	carbamoyl phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
AUK71218.1|1433494_1436737_+	carbamoyl phosphate synthase large subunit	NA	NA	NA	NA	NA
AUK71219.1|1437758_1438403_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
AUK71220.1|1438413_1439313_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK71221.1|1439360_1440446_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AUK71222.1|1440442_1442137_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK71223.1|1442315_1443266_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP017885	Bordetella pertussis strain J081, complete genome	4107548	1626825	1683988	4107548	transposase	Klosneuvirus(16.67%)	52	NA	NA
AUK71371.1|1626825_1627728_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71372.1|1627913_1628183_-	hypothetical protein	NA	NA	NA	NA	NA
AUK71373.1|1628421_1629060_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK71374.1|1629309_1629846_+	hypothetical protein	NA	NA	NA	NA	NA
AUK71375.1|1629864_1631478_+	autotransporter	NA	NA	NA	NA	NA
AUK71376.1|1631474_1632086_-	hypothetical protein	NA	NA	NA	NA	NA
AUK71377.1|1632308_1633769_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
AUK71378.1|1633865_1635458_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
AUK71379.1|1635811_1636069_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK71380.1|1636070_1637411_+	toxin HipA	NA	NA	NA	NA	NA
AUK71381.1|1637506_1638196_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK71382.1|1638208_1639639_+	MFS transporter	NA	NA	NA	NA	NA
AUK71383.1|1641363_1642185_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK71384.1|1642195_1643767_+	hypothetical protein	NA	NA	NA	NA	NA
AUK71385.1|1643795_1644773_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK71386.1|1644799_1645603_+	nitrate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
AUK71387.1|1645599_1646394_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK71388.1|1646401_1647637_+	hypothetical protein	NA	NA	NA	NA	NA
AUK73521.1|1647629_1648064_+	aconitase subunit 2	NA	NA	NA	NA	NA
AUK71389.1|1648813_1649764_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71390.1|1649743_1650325_-	hypothetical protein	NA	NA	NA	NA	NA
AUK71391.1|1650385_1652113_-	sodium-independent anion transporter	NA	NA	NA	NA	NA
AUK71392.1|1652224_1653583_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AUK71393.1|1653875_1654826_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71394.1|1654866_1655937_+	hypothetical protein	NA	NA	NA	NA	NA
AUK73522.1|1655959_1656838_-	hypothetical protein	NA	NA	NA	NA	NA
AUK71395.1|1657009_1657981_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK71396.1|1658143_1658986_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK71397.1|1659147_1659828_+	anti-sigma factor	NA	NA	NA	NA	NA
AUK71398.1|1659821_1660991_+	amine oxidase	NA	NA	NA	NA	NA
AUK71399.1|1660987_1662019_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AUK71400.1|1662086_1663304_+	MFS transporter	NA	NA	NA	NA	NA
AUK71401.1|1663338_1664871_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK71402.1|1664951_1665575_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK71403.1|1665605_1666217_+	RhtB family transporter	NA	NA	NA	NA	NA
AUK71404.1|1666252_1666723_+	histidine kinase	NA	NA	NA	NA	NA
AUK71405.1|1667154_1668159_+	peptidase M20	NA	NA	NA	NA	NA
AUK71406.1|1668195_1669710_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK71407.1|1669713_1670673_+	ABC transporter	NA	NA	NA	NA	NA
AUK71408.1|1670701_1671505_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
AUK71409.1|1671506_1673141_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AUK71410.1|1673224_1674286_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUK71411.1|1674757_1675282_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AUK71412.1|1675745_1676648_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71413.1|1676644_1677679_-	hydrolase	NA	NA	NA	NA	NA
AUK71414.1|1677787_1678426_+	hypothetical protein	NA	NA	NA	NA	NA
AUK71415.1|1678720_1678948_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK71416.1|1679070_1679784_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUK71417.1|1680028_1680979_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71418.1|1681118_1681364_+	hypothetical protein	NA	NA	NA	NA	NA
AUK71419.1|1681478_1682927_-	2-aminoadipate aminotransferase	NA	NA	NA	NA	NA
AUK71420.1|1683037_1683988_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP017885	Bordetella pertussis strain J081, complete genome	4107548	1774217	1826370	4107548	transposase,tRNA	Salmonella_phage(25.0%)	46	NA	NA
AUK71502.1|1774217_1775168_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71503.1|1775334_1775688_+	cytochrome C	NA	NA	NA	NA	NA
AUK71504.1|1775700_1776063_+	cytochrome	NA	NA	NA	NA	NA
AUK71505.1|1776104_1776530_-	hypothetical protein	NA	NA	NA	NA	NA
AUK71506.1|1776732_1777989_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
AUK71507.1|1778187_1779168_+	hypothetical protein	NA	NA	NA	NA	NA
AUK71508.1|1779317_1780559_+	hypothetical protein	NA	NA	NA	NA	NA
AUK71509.1|1780657_1781608_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71510.1|1781616_1782312_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
AUK71511.1|1782353_1785068_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AUK71512.1|1785133_1785733_-	potassium-transporting ATPase subunit C	NA	NA	NA	NA	NA
AUK71513.1|1785743_1787909_-	potassium-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AUK71514.1|1787932_1789717_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
AUK71515.1|1789716_1789806_-	potassium-transporting ATPase subunit F	NA	NA	NA	NA	NA
AUK71516.1|1790500_1790773_+	hypothetical protein	NA	NA	NA	NA	NA
AUK71517.1|1790772_1792839_+	cation acetate symporter	NA	NA	NA	NA	NA
AUK71518.1|1792835_1793738_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71519.1|1793884_1794787_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71520.1|1794950_1795283_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AUK71521.1|1795279_1795966_-	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
AUK71522.1|1795952_1796912_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
AUK71523.1|1796944_1799314_+	cell division protein FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
AUK71524.1|1799313_1799946_+	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AUK71525.1|1800047_1801388_+	recombination factor protein RarA	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
AUK71526.1|1801434_1802790_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
AUK71527.1|1803080_1803317_+	hypothetical protein	NA	NA	NA	NA	NA
AUK71528.1|1803504_1803822_-	virulence factor	NA	NA	NA	NA	NA
AUK71529.1|1804094_1804610_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
AUK71530.1|1804703_1804865_+	hypothetical protein	NA	NA	NA	NA	NA
AUK71531.1|1804880_1805636_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AUK71532.1|1805974_1806181_+	hypothetical protein	NA	NA	NA	NA	NA
AUK71533.1|1806188_1806848_-	antibiotic resistance protein	NA	NA	NA	NA	NA
AUK71534.1|1807142_1809347_-	porin	NA	NA	NA	NA	NA
AUK71535.1|1809457_1810681_-	multidrug transporter	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
AUK71536.1|1810803_1811778_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK71537.1|1811845_1813039_-	Rieske (2Fe-2S) protein	NA	NA	NA	NA	NA
AUK71538.1|1813053_1813854_-	siderophore ferric iron reductase	NA	NA	NA	NA	NA
AUK71539.1|1813850_1815707_-	IucA/IucC family protein	NA	NA	NA	NA	NA
AUK71540.1|1815703_1816309_-	siderophore biosynthesis protein	NA	NA	NA	NA	NA
AUK71541.1|1816327_1817713_-	alcaligin biosynthesis protein	NA	NA	NA	NA	NA
AUK71542.1|1818438_1819665_+	transporter	NA	NA	NA	NA	NA
AUK71543.1|1819753_1820536_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AUK71544.1|1820682_1821585_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71545.1|1821611_1822385_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AUK71546.1|1822396_1823638_+	hypothetical protein	NA	NA	NA	NA	NA
AUK71547.1|1825467_1826370_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP017885	Bordetella pertussis strain J081, complete genome	4107548	1928206	1999311	4107548	transposase	Ectocarpus_siliculosus_virus(11.11%)	55	NA	NA
AUK71640.1|1928206_1929157_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71641.1|1929178_1930399_+	YggW family oxidoreductase	NA	NA	NA	NA	NA
AUK71642.1|1930584_1931997_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AUK71643.1|1932060_1933128_+	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AUK71644.1|1933127_1934615_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AUK73534.1|1934624_1935509_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK71645.1|1935727_1936426_+	quercetin 2,3-dioxygenase	NA	NA	NA	NA	NA
AUK71646.1|1936503_1937409_+	hypothetical protein	NA	NA	NA	NA	NA
AUK71647.1|1937428_1938331_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71648.1|1938477_1939272_-	ABC transporter	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AUK71649.1|1939276_1940947_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AUK71650.1|1941070_1942120_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK71651.1|1942441_1943218_+	ferredoxin--NADP(+) reductase	NA	NA	NA	NA	NA
AUK71652.1|1943282_1944185_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK71653.1|1945478_1946282_+	2,5-didehydrogluconate reductase B	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AUK71654.1|1948975_1949362_+	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AUK71655.1|1949377_1951468_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
AUK71656.1|1951519_1952473_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AUK73535.1|1952487_1953375_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK71657.1|1953512_1955039_+	methylmalonate-semialdehyde dehydrogenase (acylating)	NA	NA	NA	NA	NA
AUK73536.1|1955137_1955638_+	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AUK71658.1|1955961_1957917_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AUK71659.1|1958084_1960169_-	hypothetical protein	NA	NA	NA	NA	NA
AUK73537.1|1960195_1960621_-	hypothetical protein	NA	NA	NA	NA	NA
AUK71660.1|1961836_1962607_+	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AUK71661.1|1962606_1963347_+	sugar ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUK71662.1|1963388_1964558_+	capsule biosynthesis protein	NA	NA	NA	NA	NA
AUK71663.1|1964589_1966674_+	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AUK71664.1|1966670_1967561_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AUK71665.1|1967557_1968655_+	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AUK71666.1|1968677_1969967_+	Vi polysaccharide biosynthesis protein VipA/TviB	NA	NA	NA	NA	NA
AUK71667.1|1969978_1971004_+	LPS biosynthesis protein WbpP	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AUK71668.1|1971000_1973058_+	beta-3-deoxy-D-manno-oct-2-ulosonic acid transferase	NA	NA	NA	NA	NA
AUK71669.1|1973071_1974247_+	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AUK71670.1|1974328_1975279_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71671.1|1975337_1976111_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK71672.1|1976103_1977660_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AUK71673.1|1977656_1978607_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71674.1|1979933_1980536_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK71675.1|1980775_1981477_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUK71676.1|1981470_1982253_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AUK71677.1|1982437_1983388_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71678.1|1983486_1984224_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AUK71679.1|1984413_1985172_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK71680.1|1985218_1986220_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK71681.1|1986385_1987354_-	phenol degradation protein meta	NA	NA	NA	NA	NA
AUK71682.1|1988893_1989862_+	AAA family ATPase	NA	NA	NA	NA	NA
AUK71683.1|1989870_1990812_+	MoxR protein	NA	NA	NA	NA	NA
AUK73538.1|1991285_1992296_+	hypothetical protein	NA	NA	NA	NA	NA
AUK73540.1|1992286_1993801_+	hypothetical protein	NA	NA	NA	NA	NA
AUK71684.1|1993797_1995144_+	hypothetical protein	NA	NA	NA	NA	NA
AUK73539.1|1995146_1996181_+	haloacid dehalogenase	NA	NA	NA	NA	NA
AUK71685.1|1996230_1997856_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AUK71686.1|1997949_1998429_+	hypothetical protein	NA	NA	NA	NA	NA
AUK71687.1|1998408_1999311_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP017885	Bordetella pertussis strain J081, complete genome	4107548	2020150	2060952	4107548	transposase,tRNA	uncultured_Caudovirales_phage(20.0%)	37	NA	NA
AUK71704.1|2020150_2021101_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71705.1|2021209_2021398_+	hypothetical protein	NA	NA	NA	NA	NA
AUK73543.1|2021394_2022117_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AUK71706.1|2022555_2023743_-	hypothetical protein	NA	NA	NA	NA	NA
AUK73544.1|2023746_2024097_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK71707.1|2024330_2025743_-	hypothetical protein	NA	NA	NA	NA	NA
AUK71708.1|2025846_2026818_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK71709.1|2026831_2027545_+	3-oxoacyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA	NA
AUK71710.1|2027549_2028467_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK71711.1|2028573_2028870_+	hypothetical protein	NA	NA	NA	NA	NA
AUK71712.1|2029016_2029919_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71713.1|2031077_2034011_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AUK71714.1|2034010_2034355_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AUK71715.1|2034351_2035980_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AUK71716.1|2035979_2036456_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AUK71717.1|2036455_2036737_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AUK71718.1|2036733_2037060_+	cation:proton antiporter	NA	NA	NA	NA	NA
AUK71719.1|2037215_2038166_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71720.1|2038209_2038752_+	hypothetical protein	NA	NA	NA	NA	NA
AUK71721.1|2038849_2039698_+	hydrolase	NA	NA	NA	NA	NA
AUK73545.1|2039747_2040197_+|tRNA	tRNA-specific adenosine deaminase	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
AUK71722.1|2040193_2041195_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
AUK71723.1|2041207_2042002_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK71724.1|2042050_2043952_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AUK71725.1|2043948_2044572_-	hypothetical protein	NA	NA	NA	NA	NA
AUK71726.1|2044698_2045823_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AUK71727.1|2046203_2047808_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
AUK71728.1|2047963_2048740_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AUK71729.1|2048824_2049823_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK71730.1|2049819_2050593_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK71731.1|2051625_2052528_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71732.1|2052626_2053577_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71733.1|2053600_2054065_-|tRNA	glutamyl-tRNA amidotransferase	tRNA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AUK71734.1|2054211_2055420_+	nitric oxide dioxygenase	NA	NA	NA	NA	NA
AUK71735.1|2055463_2055901_+	BadM/Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
AUK71736.1|2056019_2057309_+	D-amino acid dehydrogenase small subunit	NA	NA	NA	NA	NA
AUK71737.1|2060049_2060952_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP017885	Bordetella pertussis strain J081, complete genome	4107548	2200515	2272065	4107548	transposase,tRNA	Faecalibacterium_phage(33.33%)	59	NA	NA
AUK71833.1|2200515_2201418_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71834.1|2203298_2205011_-	ShlB-type family protein	NA	NA	NA	NA	NA
AUK71835.1|2205467_2206286_+	signal protein	NA	NA	NA	NA	NA
AUK71836.1|2206383_2206560_+	pili assembly chaperone	NA	NA	NA	NA	NA
AUK71837.1|2206629_2207154_+	hypothetical protein	NA	NA	NA	NA	NA
AUK73557.1|2207123_2207558_+	hypothetical protein	NA	NA	NA	NA	NA
AUK71838.1|2207559_2208036_+	hypothetical protein	NA	NA	NA	NA	NA
AUK71839.1|2208032_2208974_+	Flp pilus assembly protein CpaB	NA	NA	NA	NA	NA
AUK71840.1|2209071_2210379_+	type II secretion system protein	NA	NA	NA	NA	NA
AUK71841.1|2210375_2211725_+	pilus assembly protein CpaE	NA	NA	NA	NA	NA
AUK71842.1|2213083_2214004_+	type II secretion protein F	NA	NA	NA	NA	NA
AUK71843.1|2214012_2214999_+	type II secretion protein F	NA	NA	NA	NA	NA
AUK71844.1|2214998_2215841_+	hypothetical protein	NA	NA	NA	NA	NA
AUK71845.1|2216264_2218508_+	hypothetical protein	NA	NA	NA	NA	NA
AUK71846.1|2218529_2219921_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AUK71847.1|2220000_2220696_+	hypothetical protein	NA	NA	NA	NA	NA
AUK71848.1|2220795_2221263_+	hypothetical protein	NA	NA	NA	NA	NA
AUK73558.1|2221320_2222025_+	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AUK71849.1|2222171_2222741_+	ferritin	NA	NA	NA	NA	NA
AUK71850.1|2222737_2223148_+	cytochrome c family protein	NA	NA	NA	NA	NA
AUK71851.1|2223267_2223825_-	elongation factor P	NA	NA	NA	NA	NA
AUK71852.1|2223967_2225080_-	hypothetical protein	NA	NA	NA	NA	NA
AUK71853.1|2225095_2226298_-	hypothetical protein	NA	NA	NA	NA	NA
AUK71854.1|2226506_2227244_+	dioxygenase	NA	NA	NA	NA	NA
AUK71855.1|2227352_2230058_-	aconitate hydratase 1	NA	NA	NA	NA	NA
AUK71856.1|2230295_2230898_-	hypothetical protein	NA	NA	NA	NA	NA
AUK71857.1|2231174_2233379_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AUK71858.1|2233541_2234276_+	haloacid dehalogenase, type II	NA	NA	NA	NA	NA
AUK71859.1|2234352_2235303_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71860.1|2235401_2236304_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71861.1|2236433_2236982_-	hypothetical protein	NA	NA	NA	NA	NA
AUK71862.1|2236984_2237323_-	hypothetical protein	NA	NA	NA	NA	NA
AUK71863.1|2237718_2240310_-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA	NA
AUK73559.1|2240592_2241120_+	DNA polymerase III subunit epsilon	NA	A0A2K9V2V7	Faecalibacterium_phage	31.8	4.0e-06
AUK71864.1|2241132_2241519_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
AUK71865.1|2241525_2241816_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AUK71866.1|2241951_2242251_+	hypothetical protein	NA	NA	NA	NA	NA
AUK71867.1|2242319_2243222_+	EamA family transporter	NA	NA	NA	NA	NA
AUK71868.1|2243225_2243996_+	hypothetical protein	NA	NA	NA	NA	NA
AUK71869.1|2244381_2244831_+	hypothetical protein	NA	NA	NA	NA	NA
AUK71870.1|2244898_2245849_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71871.1|2246210_2247122_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK71872.1|2247347_2248865_+	propionyl-CoA--succinate CoA transferase	NA	NA	NA	NA	NA
AUK71873.1|2250096_2251059_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK71874.1|2251147_2251396_+	hypothetical protein	NA	NA	NA	NA	NA
AUK71875.1|2257953_2258397_-	hypothetical protein	NA	NA	NA	NA	NA
AUK71876.1|2258461_2258734_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK71877.1|2258730_2259678_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK71878.1|2259859_2261254_+	amidase	NA	NA	NA	NA	NA
AUK71879.1|2261276_2261672_-	hypothetical protein	NA	NA	NA	NA	NA
AUK71880.1|2261668_2262928_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	45.7	1.1e-91
AUK71881.1|2263049_2264105_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
AUK71882.1|2264107_2264767_-	hypothetical protein	NA	NA	NA	NA	NA
AUK71883.1|2264782_2267440_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
AUK73560.1|2267517_2268675_-	MFS transporter	NA	NA	NA	NA	NA
AUK71884.1|2268716_2269229_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUK71885.1|2269351_2269789_-	DNA-binding protein	NA	NA	NA	NA	NA
AUK71886.1|2270113_2271016_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71887.1|2271162_2272065_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP017885	Bordetella pertussis strain J081, complete genome	4107548	2313521	2409578	4107548	transposase	Erysipelothrix_phage(14.29%)	94	NA	NA
AUK71920.1|2313521_2314424_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71921.1|2315342_2316215_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK71922.1|2316292_2317432_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK71923.1|2317790_2319047_+	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AUK71924.1|2319052_2319580_+	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AUK71925.1|2319584_2320403_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK71926.1|2320402_2321125_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK71927.1|2321146_2321461_+	2Fe-2S ferredoxin	NA	NA	NA	NA	NA
AUK71928.1|2321478_2322627_+	carnitine dehydratase	NA	NA	NA	NA	NA
AUK71929.1|2322657_2323533_-	esterase	NA	NA	NA	NA	NA
AUK71930.1|2323529_2324849_-	acyl--CoA ligase	NA	NA	NA	NA	NA
AUK71931.1|2324921_2326118_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AUK71932.1|2326128_2327499_-	hypothetical protein	NA	NA	NA	NA	NA
AUK71933.1|2327856_2329683_-	DUF3604 domain-containing protein	NA	NA	NA	NA	NA
AUK71934.1|2330210_2331110_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK71935.1|2331247_2332213_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK71936.1|2332311_2333262_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71937.1|2333531_2334434_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71938.1|2334532_2335483_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71939.1|2335479_2335782_-	SelT/selW/selH domain protein	NA	NA	NA	NA	NA
AUK71940.1|2335941_2336346_+	preprotein translocase subunit TatC	NA	NA	NA	NA	NA
AUK71941.1|2336338_2337565_+	NnrS family protein	NA	NA	NA	NA	NA
AUK71942.1|2337561_2338008_+	hypothetical protein	NA	NA	NA	NA	NA
AUK71943.1|2338077_2338860_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
AUK71944.1|2338901_2340407_+	microcystin degradation protein MlrC	NA	NA	NA	NA	NA
AUK73563.1|2340692_2341487_-	oxidoreductase	NA	NA	NA	NA	NA
AUK71945.1|2341483_2342059_-	hypothetical protein	NA	NA	NA	NA	NA
AUK71946.1|2342137_2342932_-	hypothetical protein	NA	NA	NA	NA	NA
AUK71947.1|2342963_2343785_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK71948.1|2343803_2344658_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
AUK71949.1|2344661_2345633_-	hypothetical protein	NA	NA	NA	NA	NA
AUK71950.1|2345707_2346346_-	hypothetical protein	NA	NA	NA	NA	NA
AUK71951.1|2346979_2347882_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71952.1|2347916_2348921_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71953.1|2349067_2349364_-	hypothetical protein	NA	NA	NA	NA	NA
AUK71954.1|2349538_2350891_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AUK71955.1|2351033_2352050_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK73564.1|2354029_2355043_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AUK71956.1|2355129_2356035_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK71957.1|2356191_2356536_+	hypothetical protein	NA	NA	NA	NA	NA
AUK71958.1|2356693_2357152_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AUK71959.1|2357165_2359382_+	aldehyde oxidase	NA	NA	NA	NA	NA
AUK71960.1|2359378_2360440_+	hypothetical protein	NA	NA	NA	NA	NA
AUK71961.1|2360468_2361443_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK71962.1|2361394_2362213_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AUK71963.1|2362225_2362834_-	peptidase S16	NA	NA	NA	NA	NA
AUK71964.1|2363008_2363404_+	hypothetical protein	NA	NA	NA	NA	NA
AUK71965.1|2363422_2364862_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AUK71966.1|2364890_2365238_+	aldehyde-activating protein	NA	NA	NA	NA	NA
AUK71967.1|2365256_2366159_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73565.1|2366281_2366761_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK71968.1|2366859_2367810_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71969.1|2367893_2369711_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AUK73566.1|2369838_2370432_+	hypothetical protein	NA	NA	NA	NA	NA
AUK71970.1|2370444_2371374_-	hypothetical protein	NA	NA	NA	NA	NA
AUK71971.1|2371543_2372008_+	hypothetical protein	NA	NA	NA	NA	NA
AUK71972.1|2372255_2372936_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK71973.1|2372984_2374676_+	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AUK71974.1|2374691_2375243_-	ATPase	NA	NA	NA	NA	NA
AUK71975.1|2375239_2375611_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK71976.1|2375723_2376560_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK71977.1|2376570_2377050_-	hypothetical protein	NA	NA	NA	NA	NA
AUK71978.1|2377192_2377372_+	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AUK71979.1|2377501_2378476_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK71980.1|2378606_2378963_+	RNA signal recognition particle	NA	NA	NA	NA	NA
AUK73567.1|2378952_2379828_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AUK71981.1|2379926_2380811_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK71982.1|2380832_2382128_-	hypothetical protein	NA	NA	NA	NA	NA
AUK71983.1|2383076_2383727_+	NAD(P)H dehydrogenase	NA	NA	NA	NA	NA
AUK73568.1|2383814_2385335_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AUK71984.1|2385592_2387458_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AUK71985.1|2387541_2388405_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71986.1|2388503_2389406_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71987.1|2389690_2390341_-	hypothetical protein	NA	NA	NA	NA	NA
AUK71988.1|2390426_2390786_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
AUK71989.1|2390773_2392210_-	dethiobiotin synthase	NA	NA	NA	NA	NA
AUK71990.1|2392206_2392860_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK71991.1|2394152_2395427_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AUK71992.1|2395423_2396326_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK71993.1|2396540_2397515_+	hypothetical protein	NA	NA	NA	NA	NA
AUK73569.1|2397511_2397655_+	cytochrome oxidase maturation protein, cbb3-type	NA	NA	NA	NA	NA
AUK71994.1|2399276_2399939_+	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
AUK71995.1|2399941_2400118_+	cytochrome oxidase	NA	NA	NA	NA	NA
AUK71996.1|2400114_2401053_+	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
AUK71997.1|2401144_2402635_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
AUK71998.1|2402720_2402873_+	lipoprotein	NA	NA	NA	NA	NA
AUK71999.1|2402886_2403126_+	hypothetical protein	NA	NA	NA	NA	NA
AUK72000.1|2403221_2403965_+	permease	NA	NA	NA	NA	NA
AUK73570.1|2403997_2404498_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK72001.1|2404596_2405520_+	multidrug ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
AUK72002.1|2405516_2406278_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AUK73571.1|2406293_2407376_-	AI-2E family transporter	NA	NA	NA	NA	NA
AUK72003.1|2407626_2408529_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK72004.1|2408675_2409578_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP017885	Bordetella pertussis strain J081, complete genome	4107548	2476052	2541601	4107548	transposase,tRNA,protease	Lake_Baikal_phage(21.43%)	60	NA	NA
AUK72056.1|2476052_2476955_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK72057.1|2477203_2478013_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK72058.1|2478185_2479088_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK72059.1|2479084_2479978_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AUK72060.1|2480102_2480297_-	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AUK72061.1|2480296_2480638_-	ferredoxin, 2Fe-2S type, ISC system	NA	NA	NA	NA	NA
AUK72062.1|2480647_2482510_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AUK72063.1|2482639_2483152_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
AUK72064.1|2483154_2483478_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AUK72065.1|2483479_2483890_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AUK72066.1|2483927_2485139_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AUK72067.1|2485156_2485669_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AUK72068.1|2485884_2486376_-	protein tyrosine phosphatase	NA	NA	NA	NA	NA
AUK72069.1|2486628_2488665_-	excinuclease ABC subunit B	NA	NA	NA	NA	NA
AUK72070.1|2488742_2489945_+	aromatic amino acid aminotransferase	NA	NA	NA	NA	NA
AUK72071.1|2490073_2490724_+	repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
AUK72072.1|2490950_2491880_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK72073.1|2491925_2492285_+	hypothetical protein	NA	NA	NA	NA	NA
AUK72074.1|2492281_2493232_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK72075.1|2493802_2494015_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72076.1|2494032_2494764_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72077.1|2494798_2495440_-	succinyl-CoA--3-ketoacid-CoA transferase	NA	NA	NA	NA	NA
AUK72078.1|2495432_2496101_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AUK72079.1|2498313_2499090_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK72080.1|2499111_2500269_-	thiolase	NA	NA	NA	NA	NA
AUK72081.1|2500265_2500697_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72082.1|2500693_2501491_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK72083.1|2501510_2501966_-	oxidoreductase	NA	NA	NA	NA	NA
AUK72084.1|2501978_2502950_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK72085.1|2503015_2504239_-	CoA transferase	NA	NA	NA	NA	NA
AUK72086.1|2504466_2505417_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK72087.1|2505540_2507994_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AUK72088.1|2508182_2509487_-|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AUK72089.1|2509591_2510245_-	ATP-dependent Clp endopeptidase, proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AUK72090.1|2510247_2511558_-	trigger factor	NA	NA	NA	NA	NA
AUK72091.1|2511754_2512315_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AUK72092.1|2512426_2512627_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AUK72093.1|2512972_2513539_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72094.1|2513622_2513826_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AUK72095.1|2514132_2514453_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72096.1|2514494_2514776_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72097.1|2514850_2516107_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK72098.1|2516489_2516819_+	hypothetical protein	NA	NA	NA	NA	NA
AUK72099.1|2518389_2519211_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AUK72100.1|2519210_2520350_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AUK72101.1|2520356_2521253_+	ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AUK72102.1|2521267_2523175_+	ABC transporter	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AUK72103.1|2523534_2526147_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AUK72104.1|2526199_2528500_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AUK72105.1|2528496_2529705_-	acyl-CoA desaturase	NA	NA	NA	NA	NA
AUK72106.1|2529966_2530341_+	hypothetical protein	NA	NA	NA	NA	NA
AUK72107.1|2530337_2531288_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73576.1|2531386_2532784_-	rRNA methyltransferase	NA	NA	NA	NA	NA
AUK72108.1|2533440_2534406_+	riboflavin biosynthesis protein RibF	NA	NA	NA	NA	NA
AUK72109.1|2534395_2537257_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AUK72110.1|2537259_2537766_+	signal peptidase II	NA	NA	NA	NA	NA
AUK72111.1|2537870_2539079_+	phosphopantothenate synthase	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AUK72112.1|2539080_2540019_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72113.1|2540180_2540654_+	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AUK72114.1|2540650_2541601_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP017885	Bordetella pertussis strain J081, complete genome	4107548	2736475	2856690	4107548	transposase,protease	Agrobacterium_phage(16.67%)	98	NA	NA
AUK72268.1|2736475_2737378_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK72269.1|2737374_2738325_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK72270.1|2738641_2739247_+	fimbrial protein	NA	NA	NA	NA	NA
AUK72271.1|2739300_2740614_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AUK72272.1|2740688_2741159_-	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AUK72273.1|2741158_2741947_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AUK72274.1|2741957_2743610_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AUK72275.1|2743697_2744600_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73594.1|2745809_2746316_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AUK72276.1|2746312_2747077_-	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AUK72277.1|2747092_2747377_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AUK72278.1|2747441_2748431_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AUK72279.1|2748602_2749532_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AUK72280.1|2749503_2750190_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AUK72281.1|2750223_2750769_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AUK72282.1|2750813_2752079_+	peptidase M48	NA	NA	NA	NA	NA
AUK72283.1|2752075_2752978_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
AUK72284.1|2754159_2755104_-	peptide ABC transporter	NA	NA	NA	NA	NA
AUK72285.1|2755198_2756716_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK72286.1|2756757_2758386_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AUK72287.1|2758493_2759375_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK72288.1|2759635_2759863_+	hypothetical protein	NA	NA	NA	NA	NA
AUK72289.1|2762487_2762862_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AUK72290.1|2762886_2763225_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK72291.1|2763268_2764903_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AUK72292.1|2764941_2766288_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AUK73595.1|2766395_2767817_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AUK72293.1|2767886_2768471_-	nitroreductase	NA	NA	NA	NA	NA
AUK72294.1|2768573_2769524_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK72295.1|2769658_2770765_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK72296.1|2770775_2771873_+	cyclic pyranopterin phosphate synthase	NA	NA	NA	NA	NA
AUK72297.1|2772017_2773223_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AUK72298.1|2773229_2773751_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AUK73596.1|2773747_2774230_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AUK72299.1|2774235_2774487_-	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA	NA
AUK72300.1|2774467_2774953_-	molybdenum cofactor biosynthesis protein C	NA	NA	NA	NA	NA
AUK72301.1|2775088_2778550_+	hypothetical protein	NA	NA	NA	NA	NA
AUK72302.1|2778567_2779452_+	carboxymethylenebutenolidase	NA	NA	NA	NA	NA
AUK72303.1|2779461_2779893_-	hypothetical protein	NA	NA	NA	NA	NA
AUK73597.1|2780139_2780643_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AUK72304.1|2780720_2782121_+	MFS transporter	NA	NA	NA	NA	NA
AUK72305.1|2782195_2783071_-	hypothetical protein	NA	NA	NA	NA	NA
AUK73598.1|2783067_2784075_-	biotin synthase BioB	NA	NA	NA	NA	NA
AUK72306.1|2784542_2784848_+	hypothetical protein	NA	NA	NA	NA	NA
AUK72307.1|2784938_2785529_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK72308.1|2785719_2786736_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK72309.1|2786927_2789264_-	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AUK72310.1|2789346_2789781_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AUK72311.1|2789927_2790830_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK72312.1|2790928_2791879_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK72313.1|2791875_2792670_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AUK72314.1|2792701_2793406_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK72315.1|2793480_2794281_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72316.1|2794277_2794685_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AUK72317.1|2794681_2795323_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AUK73599.1|2795315_2797316_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AUK72318.1|2798576_2799908_+	arabinose ABC transporter permease	NA	NA	NA	NA	NA
AUK72319.1|2799904_2800807_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK72320.1|2802561_2802828_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72321.1|2803535_2803874_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK72322.1|2805202_2807482_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK72323.1|2808427_2809030_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK72324.1|2809126_2810416_+	MFS transporter	NA	NA	NA	NA	NA
AUK72325.1|2810473_2811205_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AUK72326.1|2811201_2812005_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AUK72327.1|2812001_2813090_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUK72328.1|2813086_2814016_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK72329.1|2814164_2815310_-	branched chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK72330.1|2815331_2816234_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK72331.1|2816612_2820434_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AUK72332.1|2820590_2821259_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72333.1|2821263_2822937_-	paraquat-inducible protein B	NA	NA	NA	NA	NA
AUK72334.1|2822955_2824275_-	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AUK72335.1|2824279_2826595_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
AUK73600.1|2826650_2828819_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AUK73601.1|2828815_2833381_-	alpha-2-macroglobulin	NA	NA	NA	NA	NA
AUK72336.1|2834094_2834409_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AUK72337.1|2834636_2834882_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AUK72338.1|2835003_2835495_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	4.8e-14
AUK72339.1|2835594_2836800_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AUK72340.1|2836915_2838313_-	chloride channel protein EriC	NA	NA	NA	NA	NA
AUK72341.1|2838429_2839008_-	superoxide dismutase	NA	NA	NA	NA	NA
AUK72342.1|2839080_2840472_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AUK72343.1|2840639_2841590_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK72344.1|2841870_2842491_+	flagellar motor protein MotA	NA	NA	NA	NA	NA
AUK72345.1|2842487_2842901_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AUK72346.1|2842897_2843941_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AUK72347.1|2843996_2844185_+	hypothetical protein	NA	NA	NA	NA	NA
AUK72348.1|2844194_2844959_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AUK72349.1|2845049_2845706_+	adenylate kinase	NA	NA	NA	NA	NA
AUK72350.1|2845797_2846556_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK72351.1|2846581_2848183_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AUK72352.1|2848383_2849388_+	iron dicitrate transport regulator FecR	NA	NA	NA	NA	NA
AUK72353.1|2849488_2849752_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AUK72354.1|2849869_2850646_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AUK72355.1|2851236_2852187_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK72356.1|2854570_2855683_-	malate dehydrogenase	NA	NA	NA	NA	NA
AUK72357.1|2855739_2856690_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP017885	Bordetella pertussis strain J081, complete genome	4107548	2879068	2930766	4107548	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
AUK72379.1|2879068_2879932_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK72380.1|2880127_2881600_-	magnesium transporter	NA	NA	NA	NA	NA
AUK72381.1|2881610_2882021_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AUK72382.1|2882084_2883131_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72383.1|2883237_2884116_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK72384.1|2884129_2885326_-	amidohydrolase	NA	NA	NA	NA	NA
AUK72385.1|2885387_2887079_+	long-chain fatty acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.4e-33
AUK72386.1|2887075_2887978_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK72387.1|2888146_2889043_-	inositol monophosphatase	NA	NA	NA	NA	NA
AUK72388.1|2891320_2893546_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AUK72389.1|2893710_2894799_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AUK72390.1|2894755_2895409_+	DL-methionine transporter permease subunit	NA	NA	NA	NA	NA
AUK72391.1|2895456_2896254_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK72392.1|2896833_2897736_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK72393.1|2897816_2898965_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AUK72394.1|2899021_2899972_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK72395.1|2900070_2900376_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AUK72396.1|2900404_2900839_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72397.1|2900840_2902085_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72398.1|2902081_2902792_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK73603.1|2902806_2903718_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72399.1|2904080_2904485_+	hypothetical protein	NA	NA	NA	NA	NA
AUK72400.1|2904481_2904940_+	hypothetical protein	NA	NA	NA	NA	NA
AUK72401.1|2904946_2905855_+	hypothetical protein	NA	NA	NA	NA	NA
AUK73604.1|2905851_2906718_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK72402.1|2906704_2907532_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AUK72403.1|2907542_2908670_+	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AUK72404.1|2911027_2912290_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK72405.1|2912296_2913049_+	DNA-binding protein	NA	NA	NA	NA	NA
AUK72406.1|2913100_2913286_-	hypothetical protein	NA	NA	NA	NA	NA
AUK73605.1|2913561_2914026_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AUK72407.1|2914105_2914717_+	3-methyladenine DNA glycosylase	NA	NA	NA	NA	NA
AUK72408.1|2914861_2916970_+	hypothetical protein	NA	NA	NA	NA	NA
AUK72409.1|2916966_2917869_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK72410.1|2918020_2918641_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK73606.1|2918744_2919485_+	oxidoreductase	NA	NA	NA	NA	NA
AUK72411.1|2920619_2921744_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72412.1|2921789_2922158_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72413.1|2922399_2923302_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK72414.1|2924385_2924928_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72415.1|2925361_2926264_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK72416.1|2926260_2927169_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK72417.1|2927295_2928132_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AUK72418.1|2928644_2929754_+	porin	NA	NA	NA	NA	NA
AUK72419.1|2929815_2930766_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP017885	Bordetella pertussis strain J081, complete genome	4107548	3115231	3183115	4107548	transposase,holin	Xanthomonas_phage(33.33%)	54	NA	NA
AUK72570.1|3115231_3116134_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK72571.1|3116142_3116691_+	phospholipid:lipid A palmitoyltransferase	NA	NA	NA	NA	NA
AUK72572.1|3116687_3117296_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AUK73616.1|3117478_3117937_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK72573.1|3117955_3119212_-	amino acid dehydrogenase	NA	NA	NA	NA	NA
AUK72574.1|3119267_3120080_-	oxidoreductase	NA	NA	NA	NA	NA
AUK72575.1|3120194_3120749_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AUK72576.1|3120758_3121748_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72577.1|3121927_3122647_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72578.1|3122663_3125399_-	preprotein translocase subunit SecA	NA	NA	NA	NA	NA
AUK72579.1|3125578_3126565_-	peptidase M23	NA	A0A292GJG6	Xanthomonas_phage	51.8	3.4e-27
AUK72580.1|3126693_3127101_+	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
AUK72581.1|3127212_3128136_-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	NA	NA	NA	NA	NA
AUK72582.1|3128364_3129549_-	cell division protein FtsZ	NA	NA	NA	NA	NA
AUK72583.1|3129737_3130964_-	cell division protein FtsA	NA	NA	NA	NA	NA
AUK72584.1|3130968_3131790_-	cell division protein FtsQ	NA	NA	NA	NA	NA
AUK72585.1|3131802_3132753_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
AUK72586.1|3132749_3134156_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
AUK72587.1|3134152_3135226_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
AUK72588.1|3135222_3136416_-	putative lipid II flippase FtsW	NA	NA	NA	NA	NA
AUK72589.1|3136412_3137945_-	UDP-N-acetylmuramoylalanine--D-glutamate ligase	NA	NA	NA	NA	NA
AUK72590.1|3137941_3139111_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
AUK72591.1|3139100_3141938_-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA	NA
AUK72592.1|3141934_3143665_-	cell division protein	NA	NA	NA	NA	NA
AUK72593.1|3143661_3143940_-	cell division protein FtsL	NA	NA	NA	NA	NA
AUK72594.1|3143939_3145034_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase	NA	NA	NA	NA	NA
AUK73617.1|3145042_3145471_-	cell division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA	NA
AUK72595.1|3146273_3148082_+	ABC transporter ATP-binding protein	NA	A0A1B0RXA0	Streptococcus_phage	28.6	1.6e-43
AUK72596.1|3148121_3149201_-	dihydroorotase	NA	NA	NA	NA	NA
AUK72597.1|3149197_3150391_-	peptidase M20	NA	NA	NA	NA	NA
AUK72598.1|3150540_3150819_+	DNA topoisomerase III	NA	NA	NA	NA	NA
AUK72599.1|3151148_3151514_-	hypothetical protein	NA	NA	NA	NA	NA
AUK73618.1|3158265_3158742_-	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AUK72600.1|3158894_3160007_+	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA	NA
AUK72601.1|3160074_3160635_-	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA	NA
AUK72602.1|3160658_3160991_-	cytochrome C	NA	NA	NA	NA	NA
AUK72603.1|3160974_3162663_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AUK72604.1|3162782_3163571_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
AUK72605.1|3164278_3165229_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK72606.1|3165673_3165985_-	cell division protein ZapA	NA	NA	NA	NA	NA
AUK72607.1|3165984_3166515_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72608.1|3166725_3167628_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK72609.1|3167726_3168677_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK72610.1|3168966_3169431_+	tricarboxylate transporter	NA	NA	NA	NA	NA
AUK72611.1|3169445_3170951_+	hypothetical protein	NA	NA	NA	NA	NA
AUK72612.1|3171207_3172812_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AUK72613.1|3172867_3173773_+	oxidoreductase	NA	NA	NA	NA	NA
AUK72614.1|3174213_3175116_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK72615.1|3175304_3176522_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
AUK72616.1|3176515_3177127_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AUK72617.1|3177760_3178738_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AUK72618.1|3178881_3179628_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
AUK72619.1|3179649_3180096_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AUK72620.1|3180883_3183115_+|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
>prophage 25
CP017885	Bordetella pertussis strain J081, complete genome	4107548	3190749	3262762	4107548	transposase,holin	Leptospira_phage(20.0%)	60	NA	NA
AUK72628.1|3190749_3191766_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK72629.1|3191962_3192787_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK72630.1|3192864_3193755_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK72631.1|3193958_3195110_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AUK72632.1|3195143_3196145_+	peptidase M14	NA	NA	NA	NA	NA
AUK72633.1|3196273_3197245_+	hypothetical protein	NA	NA	NA	NA	NA
AUK72634.1|3197269_3199354_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AUK72635.1|3199420_3200413_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72636.1|3200521_3201856_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72637.1|3201881_3203894_-	hydantoin utilization protein B	NA	NA	NA	NA	NA
AUK73619.1|3203890_3205939_-	hydantoinase	NA	NA	NA	NA	NA
AUK72638.1|3206042_3206690_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK73620.1|3206872_3207325_+	azurin	NA	NA	NA	NA	NA
AUK72639.1|3207368_3208040_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUK72640.1|3208054_3209548_-	RND transporter	NA	NA	NA	NA	NA
AUK72641.1|3209544_3212658_-	multidrug efflux protein	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AUK72642.1|3212670_3213777_-	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AUK72643.1|3213900_3214569_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK72644.1|3214789_3215740_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK72645.1|3215822_3217781_+|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AUK72646.1|3217808_3218510_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK72647.1|3218656_3219472_+	diacylglycerol kinase	NA	NA	NA	NA	NA
AUK72648.1|3219468_3220284_+	DNA repair exonuclease	NA	NA	NA	NA	NA
AUK72649.1|3220348_3221104_+	acid phosphatase	NA	NA	NA	NA	NA
AUK72650.1|3221087_3221522_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72651.1|3221518_3221953_-	thioesterase	NA	NA	NA	NA	NA
AUK73621.1|3221954_3222554_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK72652.1|3222526_3223429_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK72653.1|3223789_3224947_+	porin	NA	NA	NA	NA	NA
AUK72654.1|3225135_3225495_+	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
AUK72655.1|3225531_3226008_+	NADH dehydrogenase	NA	NA	NA	NA	NA
AUK73622.1|3226085_3226706_+	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
AUK72656.1|3226708_3227965_+	NADH dehydrogenase	NA	NA	NA	NA	NA
AUK72657.1|3228010_3228505_+	NADH-quinone oxidoreductase subunit E	NA	NA	NA	NA	NA
AUK72658.1|3228501_3229869_+	NADH oxidoreductase (quinone) subunit F	NA	NA	NA	NA	NA
AUK72659.1|3229884_3232212_+	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
AUK72660.1|3232211_3233285_+	NADH-quinone oxidoreductase subunit H	NA	NA	NA	NA	NA
AUK72661.1|3233306_3233795_+	NADH-quinone oxidoreductase subunit I	NA	NA	NA	NA	NA
AUK72662.1|3233812_3234460_+	NADH:ubiquinone oxidoreductase subunit J	NA	NA	NA	NA	NA
AUK72663.1|3234456_3234765_+	NADH-quinone oxidoreductase subunit K	NA	NA	NA	NA	NA
AUK72664.1|3234782_3236795_+	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
AUK72665.1|3236791_3238294_+	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
AUK72666.1|3238304_3239789_+	NADH-quinone oxidoreductase subunit N	NA	NA	NA	NA	NA
AUK72667.1|3239805_3240135_+	hypothetical protein	NA	NA	NA	NA	NA
AUK72668.1|3240435_3242667_+	ligand-gated channel	NA	NA	NA	NA	NA
AUK72669.1|3242878_3245149_+	ligand-gated channel	NA	NA	NA	NA	NA
AUK72670.1|3245261_3245780_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK72671.1|3245789_3246566_-	3-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK73623.1|3246562_3248287_-	acetolactate synthase catalytic subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	2.5e-25
AUK72672.1|3248412_3249393_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUK72673.1|3249530_3250448_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK72674.1|3250576_3251437_-	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
AUK72675.1|3251472_3254928_-	transcription-repair coupling factor	NA	NA	NA	NA	NA
AUK72676.1|3254957_3255641_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
AUK72677.1|3255637_3256126_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
AUK72678.1|3256272_3257175_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK72679.1|3257171_3258191_-	fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AUK72680.1|3258200_3260909_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AUK72681.1|3261056_3261713_+	hypothetical protein	NA	NA	NA	NA	NA
AUK72682.1|3261811_3262762_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP017885	Bordetella pertussis strain J081, complete genome	4107548	3314355	3357262	4107548	transposase	Planktothrix_phage(50.0%)	35	NA	NA
AUK72720.1|3314355_3315306_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73628.1|3315488_3315836_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK72721.1|3315908_3318104_+	DNA methylase	NA	NA	NA	NA	NA
AUK72722.1|3318373_3319276_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK72723.1|3319388_3319814_+	hypothetical protein	NA	NA	NA	NA	NA
AUK72724.1|3319891_3320863_+	hypothetical protein	NA	NA	NA	NA	NA
AUK73629.1|3320982_3323427_+	ligand-gated channel	NA	NA	NA	NA	NA
AUK72725.1|3323442_3324033_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AUK72726.1|3324079_3324235_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72727.1|3324276_3325179_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK72728.1|3325384_3326650_-	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AUK72729.1|3326683_3327781_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AUK72730.1|3328435_3329386_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK72731.1|3329386_3329956_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK72732.1|3330023_3330839_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK72733.1|3331005_3332625_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK72734.1|3332703_3333645_+	peptide ABC transporter	NA	NA	NA	NA	NA
AUK72735.1|3333644_3334529_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
AUK72736.1|3334532_3336185_+	microcin ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
AUK72737.1|3336224_3337622_+	amidase	NA	NA	NA	NA	NA
AUK72738.1|3337663_3339043_+	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
AUK72739.1|3339082_3339301_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72740.1|3339641_3340514_+	carboxyvinyl-carboxyphosphonate phosphorylmutase	NA	NA	NA	NA	NA
AUK72741.1|3340673_3341624_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK72742.1|3342355_3342733_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
AUK72743.1|3342717_3343419_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72744.1|3343562_3344255_-	mannose-1-phosphate guanylyltransferase	NA	NA	NA	NA	NA
AUK73630.1|3344254_3345295_-	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AUK72745.1|3345473_3347840_+	LPS biosynthesis protein	NA	NA	NA	NA	NA
AUK72746.1|3347836_3349396_+	molecular chaperone SurA	NA	NA	NA	NA	NA
AUK72747.1|3349420_3350218_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase	NA	NA	NA	NA	NA
AUK72748.1|3350249_3351395_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
AUK72749.1|3351499_3352942_+	pyruvate kinase	NA	NA	NA	NA	NA
AUK72750.1|3352944_3354174_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72751.1|3356311_3357262_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP017885	Bordetella pertussis strain J081, complete genome	4107548	3366554	3399189	4107548	transposase,tRNA,tail,terminase	uncultured_Caudovirales_phage(21.05%)	42	NA	NA
AUK72763.1|3366554_3368285_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AUK72764.1|3368350_3368923_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AUK72765.1|3368903_3369590_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AUK72766.1|3369649_3370018_+	hypothetical protein	NA	NA	NA	NA	NA
AUK72767.1|3369945_3370617_+	hypothetical protein	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AUK72768.1|3370945_3371167_+	hypothetical protein	NA	NA	NA	NA	NA
AUK72769.1|3371166_3371448_+	hypothetical protein	NA	NA	NA	NA	NA
AUK72770.1|3371444_3371960_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72771.1|3371959_3372511_-	lysozyme	NA	NA	NA	NA	NA
AUK72772.1|3372489_3372732_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72773.1|3372736_3373549_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72774.1|3373548_3373812_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72775.1|3374030_3374447_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72776.1|3374451_3378408_-	hypothetical protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AUK72777.1|3378400_3378790_-	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AUK72778.1|3378786_3379320_-	hypothetical protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AUK72779.1|3379387_3379747_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72780.1|3379756_3382369_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AUK72781.1|3382394_3382685_-	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AUK72782.1|3382702_3383032_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AUK72783.1|3383041_3383560_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AUK72784.1|3383814_3384315_-	hypothetical protein	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AUK72785.1|3384322_3384745_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72786.1|3384741_3385140_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AUK72787.1|3385136_3385532_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AUK72788.1|3385531_3385732_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72789.1|3385733_3386216_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AUK72790.1|3386278_3386530_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72791.1|3387204_3388155_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK72792.1|3388583_3389186_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AUK72793.1|3389308_3389551_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AUK72794.1|3389556_3390669_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	49.7	2.1e-102
AUK72795.1|3390640_3392059_-	hypothetical protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AUK72796.1|3392061_3393339_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AUK72797.1|3393325_3393811_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
AUK72798.1|3394450_3395353_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK72799.1|3395418_3395640_+	hypothetical protein	NA	NA	NA	NA	NA
AUK72800.1|3395654_3396353_+	hypothetical protein	NA	NA	NA	NA	NA
AUK72801.1|3396345_3396666_+	hypothetical protein	NA	NA	NA	NA	NA
AUK73631.1|3397145_3397757_+	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AUK72802.1|3397828_3398035_+	hypothetical protein	NA	NA	NA	NA	NA
AUK72803.1|3398286_3399189_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
CP017885	Bordetella pertussis strain J081, complete genome	4107548	3601453	3656427	4107548	transposase	Lake_Baikal_phage(20.0%)	46	NA	NA
AUK72983.1|3601453_3602404_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK72984.1|3602520_3603588_+	choloylglycine hydrolase	NA	NA	NA	NA	NA
AUK72985.1|3603663_3606792_-	ribonuclease E/G	NA	NA	NA	NA	NA
AUK72986.1|3607359_3608265_+	RNA pseudouridine synthase	NA	NA	NA	NA	NA
AUK72987.1|3608267_3608939_+	HAD family hydrolase	NA	NA	NA	NA	NA
AUK72988.1|3609095_3610055_+	mononuclear molybdenum enzyme YedY	NA	NA	NA	NA	NA
AUK72989.1|3610062_3610725_+	sulfoxide reductase heme-binding subunit YedZ	NA	NA	NA	NA	NA
AUK72990.1|3610721_3611672_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK72991.1|3611793_3613047_+	carnitine dehydratase	NA	NA	NA	NA	NA
AUK72992.1|3613024_3613987_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK72993.1|3614118_3614613_+	dehydratase	NA	NA	NA	NA	NA
AUK72994.1|3614612_3615845_+	mesaconyl-CoA isomerase	NA	NA	NA	NA	NA
AUK72995.1|3615979_3616204_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72996.1|3616273_3616504_-	hypothetical protein	NA	NA	NA	NA	NA
AUK72997.1|3616590_3616872_+	hypothetical protein	NA	NA	NA	NA	NA
AUK72998.1|3616858_3617845_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK72999.1|3617988_3618393_+	hypothetical protein	NA	NA	NA	NA	NA
AUK73000.1|3618534_3621921_+	molybdopterin oxidoreductase	NA	NA	NA	NA	NA
AUK73001.1|3621951_3623415_+	Short chain fatty acid transporter	NA	NA	NA	NA	NA
AUK73643.1|3623435_3625052_+	1-pyrroline-5-carboxylate dehydrogenase	NA	NA	NA	NA	NA
AUK73002.1|3625137_3625797_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK73003.1|3625826_3626267_-	hypothetical protein	NA	NA	NA	NA	NA
AUK73004.1|3626777_3626981_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
AUK73005.1|3627156_3628062_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK73006.1|3628208_3629111_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73007.1|3629209_3630160_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73008.1|3631941_3633135_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AUK73009.1|3633200_3634229_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK73010.1|3634255_3635428_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK73011.1|3635553_3636531_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK73012.1|3636541_3637513_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK73013.1|3637579_3638365_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK73014.1|3638357_3639590_-	CoA transferase	NA	NA	NA	NA	NA
AUK73015.1|3639785_3640541_-	hypothetical protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AUK73016.1|3640651_3641170_+	methyltransferase	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AUK73644.1|3642958_3644359_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK73017.1|3644458_3644803_+	TIGR01244 family protein	NA	NA	NA	NA	NA
AUK73018.1|3644891_3645362_+	universal stress protein	NA	NA	NA	NA	NA
AUK73019.1|3645772_3646171_+	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AUK73020.1|3646302_3647205_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73021.1|3649697_3650432_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AUK73022.1|3650841_3651021_+	hypothetical protein	NA	NA	NA	NA	NA
AUK73645.1|3651211_3652525_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AUK73023.1|3652540_3654052_-	TRAP ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK73024.1|3654048_3655254_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
AUK73025.1|3655449_3656427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP017885	Bordetella pertussis strain J081, complete genome	4107548	3774554	3912681	4107548	transposase,tRNA	Klosneuvirus(10.53%)	119	NA	NA
AUK73139.1|3774554_3775505_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73140.1|3775620_3775881_+	hypothetical protein	NA	NA	NA	NA	NA
AUK73141.1|3776120_3777023_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73142.1|3777082_3777643_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
AUK73143.1|3779145_3780027_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK73144.1|3780140_3781343_+	MFS transporter	NA	NA	NA	NA	NA
AUK73145.1|3781471_3783331_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AUK73146.1|3783408_3784218_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK73147.1|3784288_3785290_+	hypothetical protein	NA	NA	NA	NA	NA
AUK73148.1|3785321_3786182_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK73149.1|3786381_3787386_+	acetylesterase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
AUK73150.1|3787382_3788969_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK73151.1|3788977_3789904_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AUK73152.1|3789926_3790553_+	hypothetical protein	NA	NA	NA	NA	NA
AUK73153.1|3790651_3791602_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73652.1|3791598_3792735_-	2-alkenal reductase	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AUK73154.1|3792788_3793565_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AUK73155.1|3793589_3794048_-	large-conductance mechanosensitive channel protein	NA	NA	NA	NA	NA
AUK73653.1|3794187_3794829_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AUK73156.1|3794893_3796276_+	cytochrome b	NA	NA	NA	NA	NA
AUK73654.1|3796301_3797150_+	cytochrome c1	NA	NA	NA	NA	NA
AUK73157.1|3797308_3797920_+	glutathione S-transferase	NA	NA	NA	NA	NA
AUK73158.1|3798896_3799037_-	hypothetical protein	NA	NA	NA	NA	NA
AUK73159.1|3799044_3799206_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AUK73160.1|3799531_3800434_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73161.1|3801477_3801756_-	hypothetical protein	NA	NA	NA	NA	NA
AUK73162.1|3802898_3803447_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
AUK73163.1|3803509_3805189_-	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AUK73164.1|3805185_3806937_-	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AUK73165.1|3806933_3807059_-	cyd operon protein YbgT	NA	NA	NA	NA	NA
AUK73166.1|3807072_3808227_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AUK73167.1|3808242_3809820_-	cytochrome d terminal oxidase subunit 1	NA	NA	NA	NA	NA
AUK73168.1|3809945_3810491_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AUK73169.1|3810664_3811036_-	hypothetical protein	NA	NA	NA	NA	NA
AUK73170.1|3811050_3811953_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73171.1|3812731_3813712_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK73172.1|3813725_3814850_+	carnitine dehydratase	NA	NA	NA	NA	NA
AUK73173.1|3814857_3816612_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AUK73174.1|3816718_3817618_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK73175.1|3817682_3818666_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK73176.1|3818801_3819782_+	hypothetical protein	NA	NA	NA	NA	NA
AUK73177.1|3819798_3821190_-	fumarate hydratase, class II	NA	NA	NA	NA	NA
AUK73178.1|3821341_3821878_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AUK73179.1|3821808_3823194_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
AUK73655.1|3823336_3823957_-	hypothetical protein	NA	NA	NA	NA	NA
AUK73180.1|3824061_3825951_+	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AUK73181.1|3825947_3826889_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AUK73182.1|3826994_3828044_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AUK73183.1|3828296_3828998_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AUK73184.1|3828994_3829693_+	hypothetical protein	NA	NA	NA	NA	NA
AUK73185.1|3829693_3831049_+	poly(A) polymerase	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AUK73186.1|3831045_3831537_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AUK73187.1|3831555_3832512_-	hypothetical protein	NA	NA	NA	NA	NA
AUK73656.1|3833922_3835182_-	hypothetical protein	NA	NA	NA	NA	NA
AUK73188.1|3836195_3837239_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK73189.1|3837282_3838026_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK73190.1|3838042_3838798_-	gamma-hydroxybutyrate dehydrogenase	NA	D2K0C8	Staphylococcus_phage	55.0	4.6e-32
AUK73191.1|3839047_3839458_-	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AUK73192.1|3840407_3841205_+	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AUK73193.1|3841303_3842254_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73194.1|3842250_3843201_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73195.1|3843287_3844190_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73196.1|3844352_3845354_-	restriction endonuclease	NA	NA	NA	NA	NA
AUK73197.1|3845444_3846011_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
AUK73198.1|3846329_3848243_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
AUK73199.1|3848284_3849715_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AUK73200.1|3849827_3851240_-	hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
AUK73201.1|3851256_3851952_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK73202.1|3852170_3853121_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73203.1|3853145_3854045_-	virginiamycin B lyase	NA	NA	NA	NA	NA
AUK73204.1|3854199_3854748_+	GNAT family N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AUK73205.1|3854786_3855506_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AUK73206.1|3855676_3858520_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AUK73207.1|3859113_3861909_+	peptidase S8	NA	NA	NA	NA	NA
AUK73208.1|3862366_3863299_+	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK73209.1|3863410_3864760_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AUK73210.1|3864791_3865517_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK73657.1|3865567_3866350_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK73211.1|3866548_3867235_+	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AUK73212.1|3867234_3867879_+	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AUK73213.1|3867935_3868211_+	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AUK73214.1|3868236_3868533_+	hypothetical protein	NA	NA	NA	NA	NA
AUK73215.1|3868578_3869358_+	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AUK73658.1|3869363_3870404_+	cyclase	NA	NA	NA	NA	NA
AUK73216.1|3870508_3870832_-	PsiF repeat family protein	NA	NA	NA	NA	NA
AUK73217.1|3870988_3871891_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73218.1|3872552_3873521_-	hypothetical protein	NA	NA	NA	NA	NA
AUK73219.1|3873549_3874761_-	formyl-CoA transferase	NA	NA	NA	NA	NA
AUK73220.1|3874830_3875571_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK73221.1|3875715_3878580_-	glycine dehydrogenase (aminomethyl-transferring)	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AUK73222.1|3878639_3879014_-	glycine cleavage system protein H	NA	NA	NA	NA	NA
AUK73223.1|3879095_3880196_-	glycine cleavage system protein T	NA	NA	NA	NA	NA
AUK73224.1|3880590_3881484_-	ZIP family metal transporter	NA	NA	NA	NA	NA
AUK73225.1|3881480_3882116_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
AUK73226.1|3882218_3883121_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73227.1|3883267_3884473_-	hypothetical protein	NA	NA	NA	NA	NA
AUK73228.1|3884548_3886819_-	lysine decarboxylase	NA	NA	NA	NA	NA
AUK73659.1|3886973_3887423_-	hypothetical protein	NA	NA	NA	NA	NA
AUK73229.1|3887696_3888044_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK73230.1|3888072_3888492_+	glyoxalase	NA	NA	NA	NA	NA
AUK73231.1|3888519_3888942_+	glyoxalase	NA	NA	NA	NA	NA
AUK73232.1|3888949_3889513_-	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AUK73233.1|3889573_3893248_-	hypothetical protein	NA	NA	NA	NA	NA
AUK73234.1|3893244_3895149_-	hypothetical protein	NA	NA	NA	NA	NA
AUK73235.1|3895152_3896238_-	ATP-binding protein	NA	NA	NA	NA	NA
AUK73236.1|3896339_3896612_+	hypothetical protein	NA	NA	NA	NA	NA
AUK73237.1|3896861_3898940_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AUK73238.1|3898977_3899712_-	sulfurtransferase	NA	NA	NA	NA	NA
AUK73239.1|3899772_3900588_-	hypothetical protein	NA	NA	NA	NA	NA
AUK73240.1|3900679_3901207_-	hypothetical protein	NA	NA	NA	NA	NA
AUK73241.1|3902322_3903225_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73660.1|3903479_3903956_+	bacterioferritin	NA	NA	NA	NA	NA
AUK73242.1|3904037_3904709_-	hypothetical protein	NA	NA	NA	NA	NA
AUK73243.1|3904745_3906353_-	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AUK73244.1|3906401_3907031_-	threonine transporter RhtB	NA	NA	NA	NA	NA
AUK73245.1|3907064_3908495_-	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
AUK73246.1|3908777_3909407_+	hypothetical protein	NA	NA	NA	NA	NA
AUK73247.1|3909384_3910287_+	hypothetical protein	NA	NA	NA	NA	NA
AUK73248.1|3911730_3912681_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
CP017885	Bordetella pertussis strain J081, complete genome	4107548	4029719	4083103	4107548	transposase	Planktothrix_phage(40.0%)	45	NA	NA
AUK73358.1|4029719_4030670_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73359.1|4030839_4032066_+	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase	NA	NA	NA	NA	NA
AUK73360.1|4032265_4033132_+	AAA family ATPase	NA	NA	NA	NA	NA
AUK73361.1|4033124_4034087_+	NUDIX hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AUK73362.1|4034187_4035138_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73363.1|4035284_4036187_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73364.1|4036333_4037236_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73365.1|4037232_4038726_-	RND transporter	NA	NA	NA	NA	NA
AUK73366.1|4038722_4041830_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AUK73367.1|4041826_4044895_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AUK73368.1|4044891_4046142_-	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AUK73369.1|4046322_4047075_-	cell division protein ZapD	NA	NA	NA	NA	NA
AUK73667.1|4047116_4047761_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AUK73370.1|4047769_4048609_-	prepilin peptidase	NA	NA	NA	NA	NA
AUK73371.1|4048849_4049593_+	hypothetical protein	NA	NA	NA	NA	NA
AUK73372.1|4049675_4050023_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AUK73373.1|4050120_4050963_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AUK73374.1|4051007_4051895_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AUK73375.1|4051921_4052110_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AUK73376.1|4052207_4053665_+	MFS transporter	NA	NA	NA	NA	NA
AUK73377.1|4053651_4055178_+	glycerol kinase	NA	NA	NA	NA	NA
AUK73378.1|4055196_4055664_-	hypothetical protein	NA	NA	NA	NA	NA
AUK73379.1|4055663_4056686_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK73380.1|4056806_4057547_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AUK73381.1|4057601_4058702_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK73382.1|4058703_4059894_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK73383.1|4060013_4061030_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AUK73384.1|4061348_4062020_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AUK73385.1|4062016_4062925_+	permease	NA	NA	NA	NA	NA
AUK73386.1|4063136_4063784_+	chemotaxis protein CheD	NA	NA	NA	NA	NA
AUK73668.1|4067644_4068712_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AUK73387.1|4068722_4069532_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK73388.1|4069621_4070395_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUK73389.1|4070625_4071528_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK73390.1|4071539_4072439_+	hypothetical protein	NA	NA	NA	NA	NA
AUK73391.1|4072428_4073583_+	acyl-CoA transferase	NA	NA	NA	NA	NA
AUK73392.1|4073622_4075035_+	hypothetical protein	NA	NA	NA	NA	NA
AUK73393.1|4075057_4076026_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK73394.1|4076027_4076852_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK73395.1|4076848_4077610_+	nitrobenzoate reductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
AUK73396.1|4077690_4078377_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK73397.1|4078574_4079558_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
AUK73398.1|4079554_4080334_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK73669.1|4080421_4081654_+	CoA transferase	NA	NA	NA	NA	NA
AUK73399.1|4082200_4083103_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
