The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP017883	Bordetella pertussis strain I385, complete genome	4105355	0	64055	4105355	protease,tRNA,transposase	Natrialba_phage(12.5%)	57	NA	NA
AUK62765.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AUK62766.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
AUK62767.1|2605_3403_+	chromosome partitioning protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AUK62768.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK62769.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AUK62770.1|5124_5910_+	L-asparaginase	NA	NA	NA	NA	NA
AUK62771.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62772.1|6721_7912_+	translation elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AUK62773.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AUK62774.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AUK62775.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AUK62776.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AUK62777.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AUK62778.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AUK62779.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AUK62780.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AUK66137.1|20126_20531_-	hypothetical protein	NA	NA	NA	NA	NA
AUK62781.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62782.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AUK66138.1|26575_27286_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62783.1|27282_28185_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62784.1|28314_28614_-	hypothetical protein	NA	NA	NA	NA	NA
AUK62785.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AUK62786.1|29141_30359_-	thiolase	NA	NA	NA	NA	NA
AUK62787.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AUK62788.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK66139.1|32214_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK62789.1|33048_34470_+	2-methylcitrate dehydratase	NA	NA	NA	NA	NA
AUK62790.1|34673_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62791.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AUK62792.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AUK62793.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AUK62794.1|40060_40600_+	D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AUK62795.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AUK62796.1|41318_42212_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62797.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AUK62798.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AUK62799.1|43346_43526_-	hypothetical protein	NA	NA	NA	NA	NA
AUK62800.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK66140.1|45224_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62801.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AUK62802.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62803.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AUK62804.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AUK62805.1|50189_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62806.1|51134_52391_+	muropeptide transporter AmpG	NA	NA	NA	NA	NA
AUK62807.1|53622_54357_-	glutamate racemase	NA	NA	NA	NA	NA
AUK62808.1|54362_54953_-	arginine transporter ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AUK62809.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK62810.1|55663_56425_-	glutamate ABC transporter permease	NA	NA	NA	NA	NA
AUK62811.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK62812.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62813.1|59248_60475_-	serine kinase HipA	NA	NA	NA	NA	NA
AUK62814.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK66141.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AUK62815.1|62442_63417_-	hypothetical protein	NA	NA	NA	NA	NA
AUK62816.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
>prophage 2
CP017883	Bordetella pertussis strain I385, complete genome	4105355	69133	122073	4105355	tRNA,transposase	Planktothrix_phage(20.0%)	53	NA	NA
AUK62822.1|69133_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62823.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AUK62824.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AUK62825.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AUK62826.1|74357_74939_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AUK62827.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AUK62828.1|75280_76123_-	hypothetical protein	NA	NA	NA	NA	NA
AUK62829.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AUK62830.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK66142.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62831.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AUK62832.1|82822_83527_-	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AUK62833.1|83523_84630_-	glycosyl transferase	NA	NA	NA	NA	NA
AUK62834.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AUK62835.1|85481_86669_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AUK62836.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AUK62837.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AUK62838.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AUK62839.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AUK62840.1|90793_91846_-	oxidoreductase	NA	NA	NA	NA	NA
AUK62841.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AUK62842.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AUK62843.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AUK62844.1|94468_95272_-	pantothenate kinase	NA	NA	NA	NA	NA
AUK62845.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AUK62846.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK62847.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AUK62848.1|98332_98800_-	hypothetical protein	NA	NA	NA	NA	NA
AUK62849.1|98889_99111_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62850.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62851.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK66143.1|100607_101786_+	peptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	5.8e-66
AUK62852.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AUK62853.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AUK62854.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AUK62855.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AUK62856.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AUK62857.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AUK62858.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AUK62859.1|107427_108330_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62860.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AUK62861.1|110552_111182_-	thiol:disulfide interchange protein	NA	NA	NA	NA	NA
AUK62862.1|111243_111927_-	cell division protein	NA	NA	NA	NA	NA
AUK62863.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AUK66144.1|113906_114254_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62864.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AUK66145.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK62865.1|116036_116837_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK62866.1|116833_117709_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK62867.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK62868.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AUK62869.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AUK62870.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP017883	Bordetella pertussis strain I385, complete genome	4105355	164892	301502	4105355	protease,tRNA,transposase	Klosneuvirus(10.53%)	118	NA	NA
AUK62906.1|164892_165843_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62907.1|167286_168189_-	hypothetical protein	NA	NA	NA	NA	NA
AUK62908.1|168166_168796_-	hypothetical protein	NA	NA	NA	NA	NA
AUK62909.1|169078_170509_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
AUK62910.1|170542_171172_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AUK62911.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AUK62912.1|172864_173536_+	hypothetical protein	NA	NA	NA	NA	NA
AUK66148.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
AUK62913.1|174348_175251_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62914.1|176366_176894_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62915.1|176985_177801_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62916.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
AUK62917.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AUK62918.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
AUK62919.1|181335_182421_+	ATP-binding protein	NA	NA	NA	NA	NA
AUK62920.1|182424_184329_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62921.1|184325_188000_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62922.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AUK62923.1|188631_189054_-	glyoxalase	NA	NA	NA	NA	NA
AUK62924.1|189081_189501_-	glyoxalase	NA	NA	NA	NA	NA
AUK62925.1|189529_189877_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK66149.1|190150_190600_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62926.1|190754_193025_+	lysine decarboxylase	NA	NA	NA	NA	NA
AUK62927.1|193100_194306_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62928.1|194452_195355_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62929.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
AUK62930.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AUK62931.1|197377_198478_+	glycine cleavage system protein T	NA	NA	NA	NA	NA
AUK62932.1|198559_198934_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AUK62933.1|198993_201858_+	glycine dehydrogenase (aminomethyl-transferring)	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AUK62934.1|202002_202743_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK62935.1|202812_204024_+	formyl-CoA transferase	NA	NA	NA	NA	NA
AUK62936.1|204052_205021_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62937.1|205682_206585_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62938.1|206741_207065_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AUK66150.1|207169_208210_-	cyclase	NA	NA	NA	NA	NA
AUK62939.1|208215_208995_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AUK62940.1|209040_209337_-	hypothetical protein	NA	NA	NA	NA	NA
AUK62941.1|209362_209638_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AUK62942.1|209694_210339_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AUK62943.1|210338_211025_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AUK66151.1|211223_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK62944.1|212056_212782_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK62945.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AUK62946.1|214274_215207_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK62947.1|215664_218460_-	peptidase S8	NA	NA	NA	NA	NA
AUK62948.1|219053_221897_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AUK62949.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AUK62950.1|222825_223374_-	GNAT family N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AUK62951.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AUK62952.1|224452_225403_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62953.1|225621_226317_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK62954.1|226333_227746_+	hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
AUK62955.1|227858_229289_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AUK62956.1|229330_231244_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
AUK62957.1|231562_232129_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
AUK62958.1|232219_233221_+	restriction endonuclease	NA	NA	NA	NA	NA
AUK62959.1|233335_234286_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62960.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62961.1|235319_236270_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62962.1|236368_237166_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AUK62963.1|238115_238526_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AUK62964.1|238775_239531_+	gamma-hydroxybutyrate dehydrogenase	NA	D2K0C8	Staphylococcus_phage	55.0	4.6e-32
AUK62965.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK62966.1|240334_241378_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK66152.1|242391_243651_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62967.1|245061_246018_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62968.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AUK62969.1|246524_247880_-	poly(A) polymerase	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AUK62970.1|247880_248579_-	hypothetical protein	NA	NA	NA	NA	NA
AUK62971.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AUK62972.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AUK62973.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AUK62974.1|251622_253512_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AUK66153.1|253616_254237_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62975.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
AUK62976.1|255695_256232_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AUK62977.1|256383_257775_+	fumarate hydratase, class II	NA	NA	NA	NA	NA
AUK62978.1|257791_258772_-	hypothetical protein	NA	NA	NA	NA	NA
AUK62979.1|258907_259891_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK62980.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK62981.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AUK62982.1|262723_263848_-	carnitine dehydratase	NA	NA	NA	NA	NA
AUK62983.1|263861_264842_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK62984.1|265572_266523_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62985.1|266537_266909_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62986.1|267082_267628_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AUK62987.1|267753_269331_+	cytochrome d terminal oxidase subunit 1	NA	NA	NA	NA	NA
AUK62988.1|269346_270501_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AUK62989.1|270514_270640_+	cyd operon protein YbgT	NA	NA	NA	NA	NA
AUK62990.1|270636_272388_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AUK62991.1|272384_274064_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AUK62992.1|274126_274675_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
AUK62993.1|275817_276096_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62994.1|277139_278090_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62995.1|278367_278529_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AUK62996.1|278536_278677_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62997.1|279195_279645_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AUK62998.1|279654_280266_-	glutathione S-transferase	NA	NA	NA	NA	NA
AUK62999.1|280424_281273_-	cytochrome c1	NA	NA	NA	NA	NA
AUK63000.1|281298_282681_-	cytochrome b	NA	NA	NA	NA	NA
AUK63001.1|282745_283387_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AUK63002.1|283526_283985_+	large-conductance mechanosensitive channel protein	NA	NA	NA	NA	NA
AUK63003.1|284009_284786_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AUK66154.1|284839_285976_+	2-alkenal reductase	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AUK63004.1|285972_286923_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63005.1|287021_287648_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63006.1|287670_288597_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AUK63007.1|288605_290192_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK63008.1|290188_291193_-	acetylesterase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
AUK63009.1|291392_292253_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK63010.1|292284_293286_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63011.1|293356_294166_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK63012.1|294243_296103_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AUK63013.1|296231_297434_-	MFS transporter	NA	NA	NA	NA	NA
AUK63014.1|297547_298429_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK63015.1|299931_300492_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
AUK63016.1|300551_301502_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP017883	Bordetella pertussis strain I385, complete genome	4105355	390856	448365	4105355	transposase	Orpheovirus(14.29%)	50	NA	NA
AUK63103.1|390856_391807_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63104.1|391949_392861_+	reductase	NA	NA	NA	NA	NA
AUK63105.1|392857_393106_+	NrdH-redoxin	NA	NA	NA	NA	NA
AUK63106.1|393102_394308_+	CoA transferase	NA	NA	NA	NA	NA
AUK63107.1|394380_395376_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63108.1|395398_396619_-	acyl-CoA transferase	NA	NA	NA	NA	NA
AUK63109.1|396615_397260_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63110.1|397256_397649_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63111.1|397537_398890_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63112.1|398990_399800_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK66160.1|400104_401058_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
AUK63113.1|401156_402140_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63114.1|402816_403587_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK63115.1|403583_404762_-	carnitine dehydratase	NA	NA	NA	NA	NA
AUK63116.1|404929_406636_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AUK63117.1|406632_407529_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK63118.1|407569_409159_-	sulfurtransferase	NA	NA	NA	NA	NA
AUK63119.1|409208_410201_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63120.1|410269_410869_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63121.1|411329_412310_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63122.1|412385_413288_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63123.1|413424_414339_+	EamA family transporter	NA	NA	NA	NA	NA
AUK63124.1|414335_414995_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63125.1|415084_416008_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AUK63126.1|416013_416469_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63127.1|416465_417569_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63128.1|417756_419376_-	dolichyl-phosphate-mannose--protein mannosyltransferase	NA	NA	NA	NA	NA
AUK63129.1|419372_420431_-	glycosyltransferase	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AUK63130.1|420560_421055_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK63131.1|421147_422125_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63132.1|422320_423526_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
AUK63133.1|423522_425034_+	TRAP ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK66161.1|425049_426363_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AUK63134.1|426553_426733_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63135.1|427142_427877_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AUK63136.1|430369_431272_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63137.1|431403_431802_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AUK63138.1|432212_432683_-	universal stress protein	NA	NA	NA	NA	NA
AUK63139.1|432771_433116_-	TIGR01244 family protein	NA	NA	NA	NA	NA
AUK63140.1|433215_434616_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK63141.1|436404_436923_-	methyltransferase	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AUK63142.1|437033_437789_+	hypothetical protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AUK63143.1|437984_439217_+	CoA transferase	NA	NA	NA	NA	NA
AUK63144.1|439209_439995_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK63145.1|440061_441033_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK63146.1|441043_442021_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK63147.1|442146_443319_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK63148.1|443345_444374_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK63149.1|444439_445633_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AUK63150.1|447414_448365_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP017883	Bordetella pertussis strain I385, complete genome	4105355	619770	720234	4105355	tail,tRNA,terminase,transposase	uncultured_Caudovirales_phage(14.29%)	110	NA	NA
AUK63303.1|619770_620721_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63304.1|621419_621803_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63305.1|621860_622463_+	hypothetical protein	NA	NA	NA	NA	NA
AUK66168.1|622480_622882_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63306.1|622997_623909_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK63307.1|623905_624487_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AUK66169.1|625290_626016_+	arginyltransferase	NA	NA	NA	NA	NA
AUK63308.1|626056_627106_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AUK63309.1|627253_627832_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA	NA
AUK63310.1|628218_629196_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK63311.1|629289_633684_-	dermonecrotic toxin	NA	NA	NA	NA	NA
AUK63312.1|633884_634733_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK63313.1|634891_635704_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
AUK63314.1|635759_636710_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63315.1|636808_637609_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63316.1|637670_638054_+	thiol reductase thioredoxin	NA	NA	NA	NA	NA
AUK63317.1|638065_639499_-	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AUK63318.1|639705_640035_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63319.1|640037_640787_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63320.1|640969_641890_+	branched chain amino acid aminotransferase	NA	NA	NA	NA	NA
AUK63321.1|641936_642149_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63322.1|642171_642594_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AUK63323.1|642610_643711_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK63324.1|643807_645325_-	peptidase	NA	NA	NA	NA	NA
AUK63325.1|645400_646240_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AUK66170.1|646261_647134_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63326.1|647224_648319_-	porin	NA	NA	NA	NA	NA
AUK63327.1|648612_649515_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK66171.1|649637_650579_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63328.1|650662_651022_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63329.1|651403_652441_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63330.1|652757_654098_+	Xaa-Pro aminopeptidase	NA	NA	NA	NA	NA
AUK63331.1|654107_654560_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63332.1|654665_655838_+	monooxygenase	NA	NA	NA	NA	NA
AUK63333.1|655903_656929_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AUK63334.1|656969_657209_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AUK63335.1|657278_658868_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AUK63336.1|658867_659416_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AUK63337.1|659496_660069_+	Holliday junction DNA helicase RuvA	NA	NA	NA	NA	NA
AUK63338.1|660087_660999_-	NAD-dependent dehydratase	NA	NA	NA	NA	NA
AUK63339.1|661072_662041_-	serine dehydratase	NA	NA	NA	NA	NA
AUK63340.1|662163_663237_+	Holliday junction DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AUK63341.1|663241_665062_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AUK63342.1|665138_666041_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63343.1|666177_666513_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63344.1|666646_667297_+	carbonate dehydratase	NA	NA	NA	NA	NA
AUK63345.1|667318_668737_-	amidase	NA	NA	NA	NA	NA
AUK63346.1|668806_669562_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66172.1|669530_670289_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK63347.1|670299_671181_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK63348.1|671197_671905_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AUK63349.1|671907_672666_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AUK63350.1|672875_674618_+	sulfite reductase	NA	NA	NA	NA	NA
AUK63351.1|674610_675135_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63352.1|675174_675969_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK63353.1|676136_677210_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63354.1|677308_678259_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63355.1|678510_678717_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66173.1|678788_679400_-	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AUK63356.1|679879_680200_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63357.1|680192_680891_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63358.1|680905_681127_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63359.1|681144_682095_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63360.1|682734_683220_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
AUK63361.1|683206_684484_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AUK63362.1|684486_685905_+	hypothetical protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AUK63363.1|685876_686989_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	49.7	2.1e-102
AUK63364.1|686994_687237_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AUK63365.1|687359_687962_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AUK63366.1|688390_689341_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63367.1|690015_690267_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63368.1|690329_690812_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AUK63369.1|690813_691014_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63370.1|691013_691409_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AUK63371.1|691405_691804_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AUK63372.1|691800_692223_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63373.1|692230_692731_+	hypothetical protein	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AUK63374.1|692985_693504_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AUK63375.1|693513_693843_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AUK63376.1|693860_694151_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AUK63377.1|694176_696789_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AUK63378.1|696798_697158_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63379.1|697225_697759_+	hypothetical protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AUK63380.1|697755_698145_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AUK63381.1|698137_702094_+	hypothetical protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AUK63382.1|702098_702515_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63383.1|702733_702997_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AUK63384.1|702996_703809_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63385.1|703813_704056_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63386.1|704034_704586_+	lysozyme	NA	NA	NA	NA	NA
AUK63387.1|704585_705101_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63388.1|705097_705379_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63389.1|705378_705600_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63390.1|705928_706600_-	hypothetical protein	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AUK63391.1|706527_706896_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63392.1|706955_707642_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AUK63393.1|707622_708195_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AUK63394.1|708260_709991_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AUK63395.1|710043_710472_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AUK63396.1|710474_711155_+	protein TolQ	NA	NA	NA	NA	NA
AUK63397.1|711154_711613_+	protein TolR	NA	NA	NA	NA	NA
AUK63398.1|711649_712624_+	protein TolA	NA	NA	NA	NA	NA
AUK63399.1|712640_713957_+	Tol-Pal system beta propeller repeat protein TolB	NA	NA	NA	NA	NA
AUK63400.1|713988_714486_+	peptidoglycan-associated lipoprotein	NA	NA	NA	NA	NA
AUK63401.1|714572_715262_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AUK63402.1|715261_716311_+	iron-siderophore ABC transporter permease	NA	NA	NA	NA	NA
AUK63403.1|716307_717102_+	iron ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AUK63404.1|717270_717621_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63405.1|717596_718154_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63406.1|719283_720234_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP017883	Bordetella pertussis strain I385, complete genome	4105355	747159	820273	4105355	transposase	Streptococcus_phage(16.67%)	59	NA	NA
AUK63427.1|747159_748110_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63428.1|748764_749862_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AUK63429.1|749895_751161_+	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AUK63430.1|751366_752269_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63431.1|752310_752466_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63432.1|752512_753103_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AUK66175.1|753118_755563_-	ligand-gated channel	NA	NA	NA	NA	NA
AUK63433.1|755682_756654_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63434.1|756785_757310_+	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AUK63435.1|757269_758220_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63436.1|758441_760637_-	DNA methylase	NA	NA	NA	NA	NA
AUK66176.1|760709_761057_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK63437.1|761239_762190_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63438.1|762305_762728_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK63439.1|762811_763606_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK63440.1|763771_764908_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AUK63441.1|764978_766112_-	GTPase ObgE	NA	NA	NA	NA	NA
AUK63442.1|766261_766522_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
AUK63443.1|766555_766867_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
AUK63444.1|767291_768440_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AUK63445.1|768554_769520_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AUK63446.1|769788_770655_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK63447.1|770785_772834_+	hydantoinase	NA	NA	NA	NA	NA
AUK63448.1|772851_774849_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AUK63449.1|774883_776221_+	amino acid deaminase	NA	NA	NA	NA	NA
AUK63450.1|778391_779873_+	succinate-semialdehyde dehydrogenase (NADP(+))	NA	NA	NA	NA	NA
AUK63451.1|779888_780446_-	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AUK66177.1|780558_780738_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63452.1|780822_786045_+	hemolysin	NA	NA	NA	NA	NA
AUK63453.1|786122_788261_+	peptidase C39	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AUK63454.1|788257_789580_+	hemolysin D	NA	NA	NA	NA	NA
AUK63455.1|789581_791006_+	CyaE	NA	NA	NA	NA	NA
AUK63456.1|791096_792005_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK63457.1|792069_792984_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK63458.1|793390_793624_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63459.1|793821_794505_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK63460.1|794536_795265_+	arginine transporter ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
AUK63461.1|795294_796155_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AUK63462.1|796162_796729_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63463.1|796817_797774_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK63464.1|797818_798571_-	3-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK63465.1|798567_800313_-	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AUK63466.1|800397_801132_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK63467.1|801448_802471_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK66178.1|802486_803122_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK63468.1|803353_804361_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AUK63469.1|804401_805934_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AUK63470.1|805930_807049_-	deacylase	NA	NA	NA	NA	NA
AUK63471.1|807045_807828_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK63472.1|807839_808703_-	ABC transporter	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AUK66179.1|808721_809819_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63473.1|809887_810814_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63474.1|810848_812543_-	acetolactate synthase	NA	NA	NA	NA	NA
AUK63475.1|812742_813636_-	mechanosensitive ion channel protein	NA	NA	NA	NA	NA
AUK63476.1|813783_814734_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63477.1|814832_815489_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63478.1|815636_818345_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AUK63479.1|818354_819374_+	fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AUK63480.1|819370_820273_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP017883	Bordetella pertussis strain I385, complete genome	4105355	858764	912895	4105355	holin,transposase	Vibrio_phage(25.0%)	44	NA	NA
AUK63513.1|858764_860723_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AUK63514.1|860805_861756_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63515.1|861976_862645_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK63516.1|862768_863875_+	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AUK63517.1|863887_867001_+	multidrug efflux protein	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AUK63518.1|866997_868491_+	RND transporter	NA	NA	NA	NA	NA
AUK63519.1|868505_869177_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUK66183.1|869220_869673_-	azurin	NA	NA	NA	NA	NA
AUK63520.1|869855_870503_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK66184.1|870606_872655_+	hydantoinase	NA	NA	NA	NA	NA
AUK63521.1|872651_874664_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AUK63522.1|874689_876024_+	hypothetical protein	NA	NA	NA	NA	NA
AUK66185.1|876132_877125_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63523.1|877191_879276_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AUK63524.1|879300_880272_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63525.1|880400_881402_-	peptidase M14	NA	NA	NA	NA	NA
AUK63526.1|881435_882587_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AUK63527.1|882790_883681_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK63528.1|883758_884583_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK66186.1|884779_885796_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK63529.1|885992_886976_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK63530.1|887034_888162_-	argininosuccinate lyase	NA	NA	NA	NA	NA
AUK63531.1|888152_888527_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63532.1|888574_889963_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63533.1|889993_890983_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63534.1|891093_892326_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AUK63535.1|892607_893408_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK63536.1|893430_895662_-|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AUK63537.1|896449_896896_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AUK63538.1|896917_897664_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AUK63539.1|897807_898785_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AUK63540.1|899418_900030_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AUK63541.1|900023_901241_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
AUK63542.1|901381_902332_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63543.1|902328_903048_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63544.1|903168_905328_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
AUK63545.1|905418_905688_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
AUK66187.1|905981_906509_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63546.1|906527_907307_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AUK63547.1|907474_908491_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AUK63548.1|908563_909055_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
AUK63549.1|909065_910781_-	acetolactate synthase, large subunit, biosynthetic type	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
AUK63550.1|911251_911863_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63551.1|911944_912895_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP017883	Bordetella pertussis strain I385, complete genome	4105355	937394	999543	4105355	transposase	Bacillus_virus(15.38%)	57	NA	NA
AUK63572.1|937394_938297_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63573.1|938293_938677_-	Rieske (2Fe-2S) protein	NA	NA	NA	NA	NA
AUK63574.1|938731_940546_-	metal ABC transporter permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AUK66189.1|940695_941523_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AUK63575.1|941568_942549_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AUK63576.1|942545_942758_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63577.1|942754_943936_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63578.1|944099_944834_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AUK63579.1|944835_947448_-	penicillin-binding protein	NA	NA	NA	NA	NA
AUK63580.1|947583_949497_-	S9 family peptidase	NA	NA	NA	NA	NA
AUK63581.1|950112_950523_-	phenylacetic acid degradation protein	NA	NA	NA	NA	NA
AUK63582.1|950620_951706_+	DNA polymerase IV	NA	NA	NA	NA	NA
AUK63583.1|951804_952755_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63584.1|952751_953726_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63585.1|953871_954762_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.3e-05
AUK66190.1|955038_955431_-	hypothetical protein	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AUK63586.1|955560_956511_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63587.1|956540_956723_-	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AUK63588.1|957495_958677_-	MFS transporter	NA	NA	NA	NA	NA
AUK63589.1|958892_959570_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AUK63590.1|959566_960292_-	bifunctional 3-demethylubiquinol 3-O-methyltransferase/2-polyprenyl-6-hydroxyphenol methylase	NA	NA	NA	NA	NA
AUK63591.1|960417_960999_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63592.1|961369_964051_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AUK66191.1|964053_965184_+	phosphoserine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
AUK63593.1|965176_966262_+	chorismate mutase	NA	NA	NA	NA	NA
AUK63594.1|966348_967248_+	prephenate dehydrogenase	NA	NA	NA	NA	NA
AUK63595.1|967244_968573_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AUK63596.1|968587_969259_+	cytidylate kinase	NA	NA	NA	NA	NA
AUK63597.1|969446_971162_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AUK63598.1|971163_971523_+	integration host factor subunit beta	NA	NA	NA	NA	NA
AUK63599.1|971714_972029_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63600.1|972071_973292_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AUK63601.1|973288_974230_+	hypothetical protein	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AUK63602.1|974226_975216_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AUK66192.1|975505_975835_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63603.1|975933_976884_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63604.1|976964_977876_+	cysteine synthase B	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
AUK63605.1|977936_979082_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
AUK63606.1|979101_980016_+	deacetylase	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
AUK63607.1|980087_980837_+	electron transporter RnfB	NA	NA	NA	NA	NA
AUK63608.1|980836_981766_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
AUK63609.1|982009_983836_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK63610.1|983918_984560_+	peroxidase	NA	NA	NA	NA	NA
AUK63611.1|984749_985784_+	sulfate transporter subunit	NA	NA	NA	NA	NA
AUK63612.1|985799_986003_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63613.1|986024_986699_+	sulfate ABC transporter permease subunit CysT	NA	NA	NA	NA	NA
AUK63614.1|986813_987596_+	sulfate ABC transporter permease subunit CysW	NA	NA	NA	NA	NA
AUK63615.1|987620_988685_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
AUK66193.1|989482_990391_+	sulfate adenylyltransferase small subunit	NA	NA	NA	NA	NA
AUK63616.1|991878_993153_+	radical SAM protein	NA	NA	NA	NA	NA
AUK63617.1|993306_993687_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63618.1|993694_994567_-	multidrug DMT transporter permease	NA	NA	NA	NA	NA
AUK63619.1|994872_995253_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
AUK63620.1|995502_996189_+	coenzyme A pyrophosphatase	NA	NA	NA	NA	NA
AUK63621.1|996284_997235_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63622.1|997339_998389_+	aldo/keto reductase	NA	NA	NA	NA	NA
AUK66194.1|998526_999543_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP017883	Bordetella pertussis strain I385, complete genome	4105355	1023347	1081432	4105355	tRNA,transposase	uncultured_Mediterranean_phage(37.5%)	50	NA	NA
AUK63636.1|1023347_1024250_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63637.1|1024396_1025137_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AUK63638.1|1025331_1027368_+	transketolase	NA	NA	NA	NA	NA
AUK63639.1|1027385_1028396_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AUK63640.1|1028513_1029707_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AUK63641.1|1029736_1030510_-	enoyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA	NA
AUK63642.1|1030506_1031697_-	acetate kinase	NA	NA	NA	NA	NA
AUK63643.1|1031722_1032661_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AUK66197.1|1032657_1035006_-	3-hydroxyalkanoate synthetase	NA	NA	NA	NA	NA
AUK63644.1|1035160_1035802_-	glutathione S-transferase	NA	NA	NA	NA	NA
AUK63645.1|1037315_1037864_-	damage-inducible protein DinB	NA	NA	NA	NA	NA
AUK63646.1|1037882_1038368_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK63647.1|1038545_1039484_+	cytochrome C biogenesis protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AUK63648.1|1039486_1039804_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AUK63649.1|1039849_1040794_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63650.1|1042474_1043125_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AUK63651.1|1043178_1043514_+	hypothetical protein	NA	NA	NA	NA	NA
AUK66198.1|1043528_1044371_+	peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AUK63652.1|1044387_1044669_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63653.1|1044742_1045006_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AUK63654.1|1045249_1046200_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63655.1|1046498_1047236_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AUK63656.1|1047671_1047995_+	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AUK63657.1|1048029_1048590_+	transcriptional regulator FlhC	NA	NA	NA	NA	NA
AUK63658.1|1048710_1049586_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AUK63659.1|1049598_1050546_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
AUK63660.1|1050647_1050941_+	two-component system response regulator	NA	NA	NA	NA	NA
AUK63661.1|1050967_1053025_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
AUK63662.1|1053039_1053540_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
AUK63663.1|1053613_1055320_+	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AUK63664.1|1056183_1057236_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AUK63665.1|1057288_1057678_+	two-component system response regulator	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AUK63666.1|1057686_1058319_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
AUK66199.1|1058418_1059435_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK66200.1|1060265_1061273_+	aldo/keto reductase	NA	NA	NA	NA	NA
AUK63667.1|1061269_1062913_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AUK63668.1|1062909_1063797_-	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
AUK63669.1|1063937_1064411_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
AUK63670.1|1064400_1065423_-	phosphate starvation-inducible protein PhoH	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AUK63671.1|1065419_1066847_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AUK66201.1|1067784_1068801_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK63672.1|1069133_1070069_-	protein-export membrane protein SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AUK63673.1|1070118_1071999_-	protein-export membrane protein SecD	NA	NA	NA	NA	NA
AUK63674.1|1072065_1072410_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AUK63675.1|1072554_1073691_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AUK63676.1|1073687_1074761_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AUK63677.1|1074918_1076355_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AUK66202.1|1076445_1077087_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AUK66203.1|1077422_1078439_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK66204.1|1080481_1081432_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP017883	Bordetella pertussis strain I385, complete genome	4105355	1156548	1218671	4105355	tRNA,transposase	Erysipelothrix_phage(33.33%)	52	NA	NA
AUK63731.1|1156548_1157451_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63732.1|1157597_1158221_-	fimbrial protein	NA	NA	NA	NA	NA
AUK63733.1|1158394_1160677_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AUK63734.1|1160831_1163528_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AUK63735.1|1163653_1164142_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AUK63736.1|1164177_1166040_+	oligopeptide transporter, OPT family	NA	NA	NA	NA	NA
AUK63737.1|1166018_1166228_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63738.1|1166552_1169423_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AUK63739.1|1169468_1170683_+	dihydrolipoamide succinyltransferase	NA	NA	NA	NA	NA
AUK63740.1|1170912_1172340_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AUK63741.1|1172437_1173529_+	cell division protein ZapE	NA	NA	NA	NA	NA
AUK63742.1|1173541_1174300_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK63743.1|1174387_1175290_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK63744.1|1175286_1176237_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63745.1|1176366_1177350_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUK63746.1|1177404_1178127_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK63747.1|1179605_1180961_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AUK63748.1|1181041_1183417_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
AUK63749.1|1183581_1185657_+	helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
AUK66210.1|1185718_1186513_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
AUK63750.1|1186620_1187583_+	RNA pseudouridine synthase	NA	NA	NA	NA	NA
AUK63751.1|1187570_1188326_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63752.1|1188433_1190071_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
AUK63753.1|1190138_1190876_+	beta-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK63754.1|1190978_1191554_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
AUK63755.1|1191726_1192263_+	hypothetical protein	NA	NA	NA	NA	NA
AUK66211.1|1192295_1192610_+	periplasmic lipoprotein involved in iron transport	NA	NA	NA	NA	NA
AUK63756.1|1192625_1193471_+	FTR1 family iron permease	NA	NA	NA	NA	NA
AUK63757.1|1193509_1194889_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63758.1|1194966_1195848_+	phenazine biosynthesis protein PhzC/PhzF	NA	NA	NA	NA	NA
AUK63759.1|1195994_1196897_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63760.1|1196893_1197304_-	lactoylglutathione lyase	NA	NA	NA	NA	NA
AUK63761.1|1197411_1198266_-	2-pyrone-4,6-dicarboxylate hydrolase	NA	NA	NA	NA	NA
AUK63762.1|1198258_1199221_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63763.1|1199266_1200391_-	racemase	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
AUK63764.1|1200496_1201375_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK63765.1|1201499_1202279_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK63766.1|1202432_1203854_+	MFS transporter	NA	NA	NA	NA	NA
AUK63767.1|1204288_1205986_+	sodium:proline symporter	NA	NA	NA	NA	NA
AUK63768.1|1206014_1206137_+	hypothetical protein	NA	NA	NA	NA	NA
AUK66212.1|1206212_1207154_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
AUK63769.1|1207480_1208227_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63770.1|1208234_1209161_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK63771.1|1209282_1210200_+	oxidoreductase	NA	NA	NA	NA	NA
AUK63772.1|1210239_1211193_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK63773.1|1211217_1211796_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63774.1|1213469_1214078_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63775.1|1214155_1214509_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66213.1|1214592_1215525_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AUK63776.1|1215832_1216735_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63777.1|1216821_1217772_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63778.1|1217768_1218671_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP017883	Bordetella pertussis strain I385, complete genome	4105355	1269695	1326857	4105355	transposase	Klosneuvirus(16.67%)	53	NA	NA
AUK63814.1|1269695_1270598_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63815.1|1270783_1271053_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63816.1|1271291_1271930_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK63817.1|1272179_1272716_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63818.1|1272734_1274348_+	autotransporter	NA	NA	NA	NA	NA
AUK63819.1|1274344_1274956_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63820.1|1275178_1276639_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
AUK63821.1|1276735_1278328_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
AUK63822.1|1278681_1278939_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK63823.1|1278940_1280281_+	toxin HipA	NA	NA	NA	NA	NA
AUK63824.1|1280376_1281066_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK63825.1|1281078_1282509_+	MFS transporter	NA	NA	NA	NA	NA
AUK63826.1|1284233_1285055_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK63827.1|1285065_1286637_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63828.1|1286665_1287643_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK63829.1|1287669_1288473_+	nitrate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
AUK63830.1|1288469_1289264_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK63831.1|1289271_1290507_+	hypothetical protein	NA	NA	NA	NA	NA
AUK66217.1|1290499_1290934_+	aconitase subunit 2	NA	NA	NA	NA	NA
AUK63832.1|1291683_1292634_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63833.1|1292613_1293195_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63834.1|1293255_1294983_-	sodium-independent anion transporter	NA	NA	NA	NA	NA
AUK63835.1|1295094_1296453_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AUK63836.1|1296745_1297696_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63837.1|1297736_1298807_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63838.1|1298829_1299708_-	hypothetical protein	NA	NA	NA	NA	NA
AUK63839.1|1299879_1300851_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK63840.1|1301013_1301856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK63841.1|1302017_1302698_+	anti-sigma factor	NA	NA	NA	NA	NA
AUK63842.1|1302691_1303861_+	amine oxidase	NA	NA	NA	NA	NA
AUK63843.1|1303857_1304889_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AUK63844.1|1304956_1306174_+	MFS transporter	NA	NA	NA	NA	NA
AUK63845.1|1306208_1307741_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK63846.1|1307821_1308445_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK63847.1|1308475_1309087_+	RhtB family transporter	NA	NA	NA	NA	NA
AUK63848.1|1309122_1309593_+	histidine kinase	NA	NA	NA	NA	NA
AUK63849.1|1309767_1310016_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63850.1|1310023_1311028_+	peptidase M20	NA	NA	NA	NA	NA
AUK63851.1|1311064_1312579_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK63852.1|1312582_1313542_+	ABC transporter	NA	NA	NA	NA	NA
AUK63853.1|1313570_1314374_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
AUK63854.1|1314375_1316010_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AUK63855.1|1316093_1317155_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUK63856.1|1317626_1318151_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AUK63857.1|1318614_1319517_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63858.1|1319513_1320548_-	hydrolase	NA	NA	NA	NA	NA
AUK63859.1|1320656_1321295_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63860.1|1321589_1321817_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK63861.1|1321939_1322653_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUK63862.1|1322897_1323848_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK63863.1|1323987_1324233_+	hypothetical protein	NA	NA	NA	NA	NA
AUK63864.1|1324347_1325796_-	2-aminoadipate aminotransferase	NA	NA	NA	NA	NA
AUK63865.1|1325906_1326857_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP017883	Bordetella pertussis strain I385, complete genome	4105355	1572130	1643236	4105355	transposase	Ectocarpus_siliculosus_virus(11.11%)	55	NA	NA
AUK64085.1|1572130_1573081_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64086.1|1573102_1574323_+	YggW family oxidoreductase	NA	NA	NA	NA	NA
AUK64087.1|1574508_1575921_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AUK64088.1|1575984_1577052_+	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AUK64089.1|1577051_1578539_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AUK66231.1|1578548_1579493_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK64090.1|1579652_1580351_+	quercetin 2,3-dioxygenase	NA	NA	NA	NA	NA
AUK64091.1|1580428_1581334_+	hypothetical protein	NA	NA	NA	NA	NA
AUK64092.1|1581353_1582256_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64093.1|1582402_1583197_-	ABC transporter	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AUK64094.1|1583201_1584872_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AUK64095.1|1584995_1586045_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK64096.1|1586366_1587143_+	ferredoxin--NADP(+) reductase	NA	NA	NA	NA	NA
AUK64097.1|1587207_1588110_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK64098.1|1589403_1590207_+	2,5-didehydrogluconate reductase B	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AUK64099.1|1592900_1593287_+	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AUK64100.1|1593302_1595393_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
AUK64101.1|1595444_1596398_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AUK66232.1|1596412_1597300_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK64102.1|1597437_1598964_+	methylmalonate-semialdehyde dehydrogenase (acylating)	NA	NA	NA	NA	NA
AUK66233.1|1599062_1599563_+	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AUK64103.1|1599886_1601842_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AUK64104.1|1602009_1604094_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66234.1|1604120_1604546_-	hypothetical protein	NA	NA	NA	NA	NA
AUK64105.1|1605761_1606532_+	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AUK64106.1|1606531_1607272_+	sugar ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUK64107.1|1607313_1608483_+	capsule biosynthesis protein	NA	NA	NA	NA	NA
AUK64108.1|1608514_1610599_+	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AUK64109.1|1610595_1611486_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AUK64110.1|1611482_1612580_+	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AUK64111.1|1612602_1613892_+	Vi polysaccharide biosynthesis protein VipA/TviB	NA	NA	NA	NA	NA
AUK64112.1|1613903_1614929_+	LPS biosynthesis protein WbpP	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AUK64113.1|1614925_1616983_+	beta-3-deoxy-D-manno-oct-2-ulosonic acid transferase	NA	NA	NA	NA	NA
AUK64114.1|1616996_1618172_+	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AUK64115.1|1618253_1619204_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64116.1|1619262_1620036_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK64117.1|1620028_1621585_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AUK64118.1|1621581_1622532_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64119.1|1623858_1624461_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK64120.1|1624700_1625402_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUK64121.1|1625395_1626178_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AUK64122.1|1626362_1627313_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64123.1|1627411_1628149_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AUK64124.1|1628338_1629097_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK64125.1|1629143_1630145_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK64126.1|1630310_1631279_-	phenol degradation protein meta	NA	NA	NA	NA	NA
AUK64127.1|1632818_1633787_+	AAA family ATPase	NA	NA	NA	NA	NA
AUK64128.1|1633795_1634737_+	MoxR protein	NA	NA	NA	NA	NA
AUK66235.1|1635210_1636221_+	hypothetical protein	NA	NA	NA	NA	NA
AUK66237.1|1636211_1637726_+	hypothetical protein	NA	NA	NA	NA	NA
AUK64129.1|1637722_1639069_+	hypothetical protein	NA	NA	NA	NA	NA
AUK66236.1|1639071_1640106_+	haloacid dehalogenase	NA	NA	NA	NA	NA
AUK64130.1|1640155_1641781_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AUK64131.1|1641874_1642354_+	hypothetical protein	NA	NA	NA	NA	NA
AUK64132.1|1642333_1643236_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP017883	Bordetella pertussis strain I385, complete genome	4105355	1664075	1725423	4105355	tRNA,transposase	uncultured_Caudovirales_phage(12.5%)	54	NA	NA
AUK64148.1|1664075_1665026_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64149.1|1665134_1665323_+	hypothetical protein	NA	NA	NA	NA	NA
AUK66241.1|1665319_1666042_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AUK64150.1|1666480_1667668_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66242.1|1667671_1668022_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK64151.1|1668255_1669668_-	hypothetical protein	NA	NA	NA	NA	NA
AUK64152.1|1669771_1670743_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK64153.1|1670756_1671470_+	3-oxoacyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA	NA
AUK64154.1|1671474_1672392_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK64155.1|1672498_1672795_+	hypothetical protein	NA	NA	NA	NA	NA
AUK64156.1|1672941_1673844_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64157.1|1675002_1677936_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AUK64158.1|1677935_1678280_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AUK64159.1|1678276_1679905_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AUK64160.1|1679904_1680381_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AUK64161.1|1680380_1680662_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AUK64162.1|1680658_1680985_+	cation:proton antiporter	NA	NA	NA	NA	NA
AUK64163.1|1681140_1682091_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64164.1|1682134_1682677_+	hypothetical protein	NA	NA	NA	NA	NA
AUK64165.1|1682774_1683623_+	hydrolase	NA	NA	NA	NA	NA
AUK66243.1|1683672_1684122_+|tRNA	tRNA-specific adenosine deaminase	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
AUK64166.1|1684118_1685120_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
AUK64167.1|1685132_1685927_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK64168.1|1685975_1687877_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AUK64169.1|1687873_1688497_-	hypothetical protein	NA	NA	NA	NA	NA
AUK64170.1|1688623_1689748_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AUK64171.1|1690128_1691733_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
AUK64172.1|1691888_1692665_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AUK64173.1|1692749_1693748_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK64174.1|1693744_1694518_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK64175.1|1695502_1696453_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64176.1|1696476_1696941_-|tRNA	glutamyl-tRNA amidotransferase	tRNA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AUK64177.1|1697087_1698296_+	nitric oxide dioxygenase	NA	NA	NA	NA	NA
AUK64178.1|1698339_1698777_+	BadM/Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
AUK64179.1|1698895_1700185_+	D-amino acid dehydrogenase small subunit	NA	NA	NA	NA	NA
AUK64180.1|1702925_1703828_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64181.1|1703974_1704991_-	folate-binding protein YgfZ	NA	NA	NA	NA	NA
AUK64182.1|1705169_1706204_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
AUK64183.1|1706200_1706827_+	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AUK64184.1|1706823_1707876_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AUK64185.1|1707925_1708696_+	DNAase	NA	NA	NA	NA	NA
AUK64186.1|1708746_1709583_+	hypothetical protein	NA	NA	NA	NA	NA
AUK64187.1|1709778_1710519_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK64188.1|1710593_1711337_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK64189.1|1711998_1712772_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AUK66244.1|1713909_1715199_+	glutamate dehydrogenase	NA	NA	NA	NA	NA
AUK64190.1|1716809_1718057_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AUK64191.1|1718066_1719776_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AUK64192.1|1719772_1720711_-	CoA ester lyase	NA	NA	NA	NA	NA
AUK64193.1|1720707_1721991_-	C4-dicarboxylate ABC transporter permease	NA	NA	NA	NA	NA
AUK64194.1|1721994_1722477_-	TRAP transporter small permease protein	NA	NA	NA	NA	NA
AUK64195.1|1722477_1723464_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK64196.1|1723636_1724356_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK64197.1|1724472_1725423_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP017883	Bordetella pertussis strain I385, complete genome	4105355	1831611	1903121	4105355	tRNA,transposase	Klosneuvirus(22.22%)	60	NA	NA
AUK64276.1|1831611_1832562_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64277.1|1832686_1833496_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK64278.1|1833744_1834647_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64279.1|1835920_1837138_+	hypothetical protein	NA	NA	NA	NA	NA
AUK64280.1|1837134_1838190_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
AUK64281.1|1838194_1839097_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK64282.1|1839173_1840046_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AUK64283.1|1840176_1840545_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
AUK64284.1|1840602_1841649_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AUK64285.1|1841844_1843101_+	amino acid dehydrogenase	NA	NA	NA	NA	NA
AUK64286.1|1843105_1844443_+	glycerol-3-phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK64287.1|1844592_1845549_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK64288.1|1847006_1847372_+	hypothetical protein	NA	NA	NA	NA	NA
AUK64289.1|1847419_1848994_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK64290.1|1849046_1849991_+	peptide ABC transporter	NA	NA	NA	NA	NA
AUK66252.1|1849918_1850839_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
AUK64291.1|1850831_1852466_+	microcin ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
AUK64292.1|1852462_1853818_+	amidase	NA	NA	NA	NA	NA
AUK64293.1|1854724_1856302_+	hypothetical protein	NA	NA	NA	NA	NA
AUK64294.1|1856305_1857580_+	hypothetical protein	NA	NA	NA	NA	NA
AUK66253.1|1857677_1858052_+	hypothetical protein	NA	NA	NA	NA	NA
AUK64295.1|1859767_1860901_+	general secretion pathway protein	NA	NA	NA	NA	NA
AUK64296.1|1860938_1861544_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
AUK64297.1|1861540_1862359_+	hypothetical protein	NA	NA	NA	NA	NA
AUK64298.1|1862430_1865055_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AUK64299.1|1865041_1865296_+	hypothetical protein	NA	NA	NA	NA	NA
AUK64300.1|1865362_1865944_-	hypothetical protein	NA	NA	NA	NA	NA
AUK64301.1|1866247_1866508_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AUK64302.1|1866673_1867297_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AUK64303.1|1867296_1868070_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AUK64304.1|1868066_1869275_-	class V aminotransferase	NA	NA	NA	NA	NA
AUK64305.1|1869300_1869774_-	hypothetical protein	NA	NA	NA	NA	NA
AUK64306.1|1869847_1870798_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64307.1|1870896_1871799_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64308.1|1871945_1873295_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AUK64309.1|1874060_1874816_+	hypothetical protein	NA	NA	NA	NA	NA
AUK64310.1|1874908_1877791_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AUK64311.1|1878113_1878539_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AUK64312.1|1878566_1879715_+	23S rRNA (adenine(2503)-C(2))-methyltransferase	NA	NA	NA	NA	NA
AUK64313.1|1879711_1880218_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK64314.1|1880233_1881520_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	NA	NA	NA	NA	NA
AUK64315.1|1881569_1882865_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AUK64316.1|1882866_1883505_+	hypothetical protein	NA	NA	NA	NA	NA
AUK66254.1|1883510_1884668_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AUK64317.1|1884694_1886050_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AUK64318.1|1886053_1887124_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AUK64319.1|1887262_1887499_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
AUK64320.1|1887586_1888693_+	GTPase HflX	NA	NA	NA	NA	NA
AUK64321.1|1888658_1889963_+	HflK protein	NA	NA	NA	NA	NA
AUK64322.1|1889981_1890881_+	HflC protein	NA	NA	NA	NA	NA
AUK64323.1|1891064_1892222_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AUK64324.1|1892298_1893594_+	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AUK64325.1|1893707_1894247_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
AUK64326.1|1894524_1894737_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
AUK64327.1|1894756_1896787_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AUK64328.1|1897472_1899755_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
AUK64329.1|1900164_1900464_-	hypothetical protein	NA	NA	NA	NA	NA
AUK64330.1|1900748_1901162_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AUK64331.1|1901121_1902072_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64332.1|1902170_1903121_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP017883	Bordetella pertussis strain I385, complete genome	4105355	1914373	1962790	4105355	transposase	Klosneuvirus(16.67%)	47	NA	NA
AUK64343.1|1914373_1915276_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64344.1|1915272_1916547_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AUK64345.1|1916650_1917844_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AUK64346.1|1917840_1918494_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK64347.1|1918490_1919927_+	dethiobiotin synthase	NA	NA	NA	NA	NA
AUK64348.1|1919914_1920274_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
AUK64349.1|1920359_1921010_+	hypothetical protein	NA	NA	NA	NA	NA
AUK64350.1|1921294_1922197_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64351.1|1922295_1923159_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64352.1|1923242_1925108_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AUK66258.1|1925365_1926886_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AUK64353.1|1926973_1927624_-	NAD(P)H dehydrogenase	NA	NA	NA	NA	NA
AUK64354.1|1928572_1929868_+	hypothetical protein	NA	NA	NA	NA	NA
AUK64355.1|1929889_1930774_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK64356.1|1930872_1931748_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AUK64357.1|1931737_1932094_-	RNA signal recognition particle	NA	NA	NA	NA	NA
AUK64358.1|1932224_1933199_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK64359.1|1933328_1933508_-	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AUK64360.1|1933650_1934130_+	hypothetical protein	NA	NA	NA	NA	NA
AUK64361.1|1934140_1934977_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK64362.1|1935089_1935461_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK64363.1|1935457_1936009_+	ATPase	NA	NA	NA	NA	NA
AUK64364.1|1936024_1937716_-	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AUK64365.1|1937764_1938445_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK64366.1|1938692_1939157_-	hypothetical protein	NA	NA	NA	NA	NA
AUK64367.1|1939326_1940256_+	hypothetical protein	NA	NA	NA	NA	NA
AUK66259.1|1940268_1940862_-	hypothetical protein	NA	NA	NA	NA	NA
AUK64368.1|1940989_1942807_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AUK64369.1|1942890_1943841_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK66260.1|1943939_1944419_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK64370.1|1944541_1945444_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64371.1|1945462_1945810_-	aldehyde-activating protein	NA	NA	NA	NA	NA
AUK64372.1|1945838_1947278_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AUK64373.1|1947296_1947692_-	hypothetical protein	NA	NA	NA	NA	NA
AUK64374.1|1947866_1948475_+	peptidase S16	NA	NA	NA	NA	NA
AUK64375.1|1948487_1949306_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AUK64376.1|1949257_1950232_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK64377.1|1950260_1951322_-	hypothetical protein	NA	NA	NA	NA	NA
AUK64378.1|1951318_1953535_-	aldehyde oxidase	NA	NA	NA	NA	NA
AUK64379.1|1953548_1954007_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AUK64380.1|1954164_1954509_-	hypothetical protein	NA	NA	NA	NA	NA
AUK64381.1|1954665_1955571_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK66261.1|1955657_1956671_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AUK66262.1|1958650_1959667_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK64382.1|1959809_1961162_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AUK64383.1|1961336_1961633_+	hypothetical protein	NA	NA	NA	NA	NA
AUK64384.1|1961779_1962790_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP017883	Bordetella pertussis strain I385, complete genome	4105355	1975223	2039544	4105355	transposase	Vibrio_phage(20.0%)	54	NA	NA
AUK64398.1|1975223_1976174_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64399.1|1976395_1977346_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64400.1|1977444_1978410_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK64401.1|1978547_1979447_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK64402.1|1979974_1981801_+	DUF3604 domain-containing protein	NA	NA	NA	NA	NA
AUK64403.1|1982158_1983529_+	hypothetical protein	NA	NA	NA	NA	NA
AUK64404.1|1983539_1984736_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AUK64405.1|1984808_1986128_+	acyl--CoA ligase	NA	NA	NA	NA	NA
AUK64406.1|1986124_1987000_+	esterase	NA	NA	NA	NA	NA
AUK64407.1|1987030_1988179_-	carnitine dehydratase	NA	NA	NA	NA	NA
AUK64408.1|1988196_1988511_-	2Fe-2S ferredoxin	NA	NA	NA	NA	NA
AUK64409.1|1988532_1989255_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK64410.1|1989254_1990073_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK64411.1|1990077_1990605_-	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AUK64412.1|1990610_1991867_-	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AUK64413.1|1992225_1993365_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK64414.1|1993442_1994315_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK64415.1|1995233_1996136_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64416.1|1996095_1996731_-	hypothetical protein	NA	NA	NA	NA	NA
AUK64417.1|1997090_1998413_-	isocitrate lyase	NA	NA	NA	NA	NA
AUK64418.1|1998731_1999553_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
AUK64419.1|1999488_1999830_-	hypothetical protein	NA	NA	NA	NA	NA
AUK64420.1|1999839_2000808_-	MFS transporter	NA	NA	NA	NA	NA
AUK64421.1|2000977_2001550_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AUK64422.1|2001589_2003419_-	excinuclease ABC subunit C	NA	NA	NA	NA	NA
AUK64423.1|2003381_2004440_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
AUK64424.1|2004477_2004939_-	holo-ACP synthase	NA	NA	NA	NA	NA
AUK64425.1|2005023_2005770_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AUK64426.1|2007260_2010491_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AUK64427.1|2010557_2011889_-	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AUK64428.1|2012141_2012516_-	DNA-binding protein	NA	NA	NA	NA	NA
AUK64429.1|2012618_2013797_-	hypothetical protein	NA	NA	NA	NA	NA
AUK64430.1|2013807_2014398_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66264.1|2014508_2015315_+	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AUK64431.1|2015340_2016135_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AUK64432.1|2017135_2018110_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK64433.1|2018268_2018781_-	superoxide dismutase	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AUK64434.1|2018937_2019909_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK64435.1|2021653_2022460_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK64436.1|2022456_2023758_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AUK64437.1|2023708_2024473_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK64438.1|2024586_2025357_-	spermidine synthase	NA	NA	NA	NA	NA
AUK64439.1|2025441_2026629_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AUK64440.1|2026701_2027076_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AUK64441.1|2027176_2028439_-	glycine/betaine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AUK64442.1|2028435_2029293_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK64443.1|2029465_2030467_-	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK64444.1|2030918_2031821_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK66265.1|2033432_2034584_+	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA	NA
AUK64445.1|2034952_2035189_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
AUK64446.1|2035252_2035420_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
AUK64447.1|2035533_2037339_-	sulfate transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
AUK64448.1|2037592_2038495_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64449.1|2038641_2039544_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP017883	Bordetella pertussis strain I385, complete genome	4105355	2171121	2228400	4105355	tRNA,transposase	Klosneuvirus(15.38%)	49	NA	NA
AUK64549.1|2171121_2172072_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK66273.1|2172170_2173568_-	rRNA methyltransferase	NA	NA	NA	NA	NA
AUK64550.1|2174224_2175190_+	riboflavin biosynthesis protein RibF	NA	NA	NA	NA	NA
AUK64551.1|2175179_2178041_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AUK64552.1|2178043_2178550_+	signal peptidase II	NA	NA	NA	NA	NA
AUK64553.1|2178654_2179863_+	phosphopantothenate synthase	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AUK64554.1|2179864_2180803_-	hypothetical protein	NA	NA	NA	NA	NA
AUK64555.1|2180964_2181438_+	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AUK64556.1|2181434_2182385_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64557.1|2182495_2182936_-	hypothetical protein	NA	NA	NA	NA	NA
AUK64558.1|2183064_2184294_-	lytic transglycosylase	NA	NA	NA	NA	NA
AUK64559.1|2184332_2185154_-	hypothetical protein	NA	NA	NA	NA	NA
AUK64560.1|2185207_2186359_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK64561.1|2186450_2186921_-	hypothetical protein	NA	NA	NA	NA	NA
AUK64562.1|2189489_2192039_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AUK64563.1|2192109_2194683_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AUK64564.1|2194948_2195149_+	general stress protein CsbD	NA	NA	NA	NA	NA
AUK64565.1|2195180_2195342_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AUK64566.1|2195399_2195738_+	phospholipid-binding protein	NA	NA	NA	NA	NA
AUK64567.1|2195886_2196789_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64568.1|2197611_2198280_+	arylesterase	NA	NA	NA	NA	NA
AUK66274.1|2198261_2200217_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AUK64569.1|2200459_2201209_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AUK64570.1|2201221_2202085_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AUK64571.1|2202088_2203504_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AUK64572.1|2203637_2204366_-	glutathione peroxidase	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AUK64573.1|2204504_2204705_-	heavy metal transporter	NA	NA	NA	NA	NA
AUK64574.1|2204880_2205279_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AUK64575.1|2205302_2206703_-	23S rRNA (uracil(1939)-C(5))-methyltransferase	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AUK64576.1|2206821_2207574_-	hypothetical protein	NA	NA	NA	NA	NA
AUK64577.1|2207862_2208462_-	hypothetical protein	NA	NA	NA	NA	NA
AUK64578.1|2208566_2209346_-	3'-5' exonuclease	NA	NA	NA	NA	NA
AUK64579.1|2209342_2210227_-	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AUK64580.1|2210244_2211024_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
AUK64581.1|2211008_2211767_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AUK66275.1|2211904_2212540_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AUK66276.1|2212807_2213824_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK64582.1|2213921_2214962_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AUK64583.1|2215096_2216389_+	guanine permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AUK64584.1|2217748_2218132_+	thiol reductase thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AUK64585.1|2218149_2218737_-	thymidylate synthase	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AUK64586.1|2218774_2219677_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64587.1|2219823_2220384_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AUK64588.1|2220380_2220926_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUK64589.1|2221121_2222150_+	silent information regulator protein Sir2	NA	NA	NA	NA	NA
AUK64590.1|2222190_2223531_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AUK64591.1|2223639_2224644_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK64592.1|2224750_2227351_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AUK64593.1|2227497_2228400_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP017883	Bordetella pertussis strain I385, complete genome	4105355	2268608	2332138	4105355	protease,transposase	uncultured_Caudovirales_phage(11.11%)	50	NA	NA
AUK64631.1|2268608_2269511_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64632.1|2269657_2270560_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64633.1|2270861_2271338_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
AUK64634.1|2271961_2273599_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
AUK64635.1|2273629_2274943_-	pyrimidine utilization transport protein G	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
AUK66283.1|2275103_2275394_+	hypothetical protein	NA	NA	NA	NA	NA
AUK64636.1|2275494_2276817_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK64637.1|2276813_2277716_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64638.1|2277845_2278229_-	hypothetical protein	NA	NA	NA	NA	NA
AUK64639.1|2278293_2279316_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK64640.1|2279344_2280175_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
AUK66284.1|2280191_2281889_-	phosphonate ABC transporter permease	NA	NA	NA	NA	NA
AUK64641.1|2281953_2283030_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
AUK64642.1|2283189_2284053_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK64643.1|2284083_2284653_+	phosphohydrolase	NA	NA	NA	NA	NA
AUK64644.1|2284669_2285521_-	sulfurtransferase	NA	NA	NA	NA	NA
AUK64645.1|2286578_2287460_+|protease	zinc metalloprotease HtpX	protease	NA	NA	NA	NA
AUK64646.1|2287534_2288524_-	quinone oxidoreductase	NA	NA	NA	NA	NA
AUK64647.1|2288586_2289537_-	EamA family transporter	NA	NA	NA	NA	NA
AUK64648.1|2289599_2290457_+	EamA family transporter	NA	NA	NA	NA	NA
AUK64649.1|2290516_2291005_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUK64650.1|2292577_2293768_+	HlyD family secretion protein	NA	NA	NA	NA	NA
AUK64651.1|2293764_2295351_+	MFS transporter	NA	NA	NA	NA	NA
AUK64652.1|2295369_2296437_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
AUK66285.1|2296541_2298071_-	DNA-binding protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.0e-14
AUK64653.1|2298505_2300080_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK64654.1|2300187_2301204_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK64655.1|2301200_2302040_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK66286.1|2302050_2303682_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.7e-21
AUK64656.1|2303678_2304581_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64657.1|2304771_2306046_+	4-aminobutyrate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
AUK64658.1|2306075_2306366_+	cupin	NA	NA	NA	NA	NA
AUK66287.1|2306438_2307452_+	acetylpolyamine amidohydrolase	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
AUK64659.1|2307471_2308734_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AUK64660.1|2308736_2309660_+	EamA family transporter	NA	NA	NA	NA	NA
AUK64661.1|2309656_2311150_+	aldehyde dehydrogenase PuuC	NA	NA	NA	NA	NA
AUK64662.1|2311160_2312093_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AUK64663.1|2312310_2313600_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
AUK66288.1|2313634_2314978_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
AUK64664.1|2315050_2316571_-	ATP-binding protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
AUK64665.1|2316725_2317457_+	hypothetical protein	NA	NA	NA	NA	NA
AUK64666.1|2317554_2318865_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AUK64667.1|2318880_2319792_+	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
AUK66289.1|2319788_2320376_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
AUK64668.1|2320437_2320824_+	ribosome silencing factor	NA	NA	NA	NA	NA
AUK64669.1|2320835_2321306_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
AUK64670.1|2321317_2321941_+	septum formation protein Maf	NA	NA	NA	NA	NA
AUK64671.1|2321961_2324709_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK64672.1|2330985_2331201_+	hypothetical protein	NA	NA	NA	NA	NA
AUK64673.1|2331187_2332138_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP017883	Bordetella pertussis strain I385, complete genome	4105355	2477079	2535323	4105355	tRNA,transposase	Planktothrix_phage(28.57%)	53	NA	NA
AUK64793.1|2477079_2477982_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64794.1|2478509_2479166_-	N-(5'-phosphoribosyl)anthranilate isomerase	NA	NA	NA	NA	NA
AUK64795.1|2479180_2480848_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AUK64796.1|2480850_2481480_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK64797.1|2481691_2482786_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK64798.1|2482930_2483743_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AUK64799.1|2483746_2485330_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
AUK64800.1|2485500_2486631_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AUK64801.1|2486817_2487894_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AUK66300.1|2487975_2488626_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AUK64802.1|2488640_2490044_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
AUK64803.1|2490327_2491146_-	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK64804.1|2491142_2491847_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
AUK64805.1|2492746_2493862_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK64806.1|2493895_2494270_-	hypothetical protein	NA	NA	NA	NA	NA
AUK64807.1|2494292_2495450_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
AUK64808.1|2495462_2495696_-	hypothetical protein	NA	NA	NA	NA	NA
AUK64809.1|2496330_2499300_-	formate dehydrogenase	NA	NA	NA	NA	NA
AUK64810.1|2499314_2499524_-	formate dehydrogenase	NA	NA	NA	NA	NA
AUK64811.1|2499675_2500305_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66301.1|2500301_2502359_-	4Fe-4S ferredoxin	NA	NA	NA	NA	NA
AUK64812.1|2502415_2503096_-	hypothetical protein	NA	NA	NA	NA	NA
AUK64813.1|2503092_2503653_-	hypothetical protein	NA	NA	NA	NA	NA
AUK64814.1|2503659_2504757_-	MRP family ATP-binding protein	NA	NA	NA	NA	NA
AUK64815.1|2504909_2505503_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
AUK64816.1|2505499_2506792_+	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AUK64817.1|2506805_2507348_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
AUK64818.1|2507357_2508194_-	peptidase M48	NA	NA	NA	NA	NA
AUK64819.1|2508227_2509289_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
AUK64820.1|2509330_2510383_-	diguanylate cyclase	NA	NA	NA	NA	NA
AUK64821.1|2510398_2510701_-	hypothetical protein	NA	NA	NA	NA	NA
AUK64822.1|2510842_2511793_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64823.1|2511971_2513666_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK64824.1|2513662_2514748_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AUK64825.1|2514795_2515695_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK64826.1|2515705_2516350_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AUK64827.1|2517371_2520614_-	carbamoyl phosphate synthase large subunit	NA	NA	NA	NA	NA
AUK64828.1|2520624_2521779_-	carbamoyl phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
AUK64829.1|2522005_2522968_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
AUK64830.1|2523114_2524017_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64831.1|2524163_2525066_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64832.1|2525075_2525765_-	hypothetical protein	NA	NA	NA	NA	NA
AUK64833.1|2525824_2526262_-	thioesterase	NA	NA	NA	NA	NA
AUK64834.1|2526307_2527201_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AUK64835.1|2527248_2528421_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK64836.1|2528417_2529572_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK64837.1|2529768_2530119_-	RnfH family protein	NA	NA	NA	NA	NA
AUK64838.1|2530108_2530543_-	ubiquinone-binding protein	NA	NA	NA	NA	NA
AUK64839.1|2530559_2531462_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64840.1|2531657_2532125_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AUK64841.1|2532105_2533263_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AUK64842.1|2533328_2534255_-	paraslipin	NA	NA	NA	NA	NA
AUK64843.1|2534420_2535323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP017883	Bordetella pertussis strain I385, complete genome	4105355	2577649	2644101	4105355	transposase	uncultured_Caudovirales_phage(40.0%)	58	NA	NA
AUK64881.1|2577649_2578552_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64882.1|2578567_2578780_+	hypothetical protein	NA	NA	NA	NA	NA
AUK64883.1|2578921_2579494_+	flagellar basal body protein FliL	NA	NA	NA	NA	NA
AUK64884.1|2579496_2580507_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AUK64885.1|2580499_2581000_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AUK64886.1|2581010_2581352_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AUK66305.1|2581420_2582155_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AUK64887.1|2582171_2582441_+	EscS/YscS/HrcS family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AUK64888.1|2582463_2583252_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AUK66306.1|2583298_2584315_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK64889.1|2584531_2585974_-	chemotaxis protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AUK64890.1|2586152_2587772_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AUK64891.1|2587892_2589713_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	67.4	5.6e-07
AUK64892.1|2589791_2591324_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AUK64893.1|2591357_2593004_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AUK64894.1|2593073_2594096_-	flagellar rod assembly protein/muramidase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AUK64895.1|2594113_2595247_-	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AUK64896.1|2595249_2595939_-	flagellar basal body L-ring protein	NA	NA	NA	NA	NA
AUK64897.1|2595938_2596724_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AUK64898.1|2596767_2597532_-	flagellar biosynthesis protein FlgF	NA	NA	NA	NA	NA
AUK64899.1|2597570_2598992_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AUK64900.1|2599057_2599762_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AUK64901.1|2599809_2600229_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AUK64902.1|2600241_2600649_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AUK66307.1|2600832_2601543_+	flagella basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AUK64903.1|2601669_2601960_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AUK64904.1|2601977_2602460_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AUK64905.1|2606965_2608120_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
AUK66308.1|2608425_2609442_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK64906.1|2609688_2610477_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK64907.1|2610543_2611224_+	cysteine ABC transporter permease	NA	NA	NA	NA	NA
AUK64908.1|2611220_2611991_+	ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AUK64909.1|2612089_2613040_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64910.1|2613095_2614013_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AUK64911.1|2614023_2615202_-	mandelate racemase	NA	NA	NA	NA	NA
AUK64912.1|2615221_2616217_-	hypothetical protein	NA	NA	NA	NA	NA
AUK64913.1|2617805_2618414_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AUK64914.1|2618401_2619442_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUK64915.1|2619459_2620422_-	hypothetical protein	NA	NA	NA	NA	NA
AUK64916.1|2620418_2621612_-	CoA transferase	NA	NA	NA	NA	NA
AUK64917.1|2621608_2622406_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AUK64918.1|2622431_2623418_-	hypothetical protein	NA	NA	NA	NA	NA
AUK64919.1|2623436_2625476_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AUK66309.1|2625677_2626358_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK64920.1|2626371_2627283_-	CoA ester lyase	NA	NA	NA	NA	NA
AUK64921.1|2627279_2627858_-	NADPH-dependent FMN reductase	NA	NA	NA	NA	NA
AUK64922.1|2627996_2628902_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK64923.1|2628909_2632329_+	nuclease	NA	NA	NA	NA	NA
AUK64924.1|2632316_2634917_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK64925.1|2635872_2636505_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AUK64926.1|2636898_2637657_+	hypothetical protein	NA	NA	NA	NA	NA
AUK64927.1|2637653_2638856_+	cardiolipin synthase B	NA	NA	NA	NA	NA
AUK64928.1|2638852_2639053_+	hypothetical protein	NA	NA	NA	NA	NA
AUK64929.1|2639043_2639994_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64930.1|2640901_2642047_+	hypothetical protein	NA	NA	NA	NA	NA
AUK64931.1|2642033_2642789_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK64932.1|2642905_2643085_+	hypothetical protein	NA	NA	NA	NA	NA
AUK64933.1|2643150_2644101_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP017883	Bordetella pertussis strain I385, complete genome	4105355	2672264	2709628	4105355	transposase	Planktothrix_phage(33.33%)	40	NA	NA
AUK64952.1|2672264_2673167_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64953.1|2673313_2674216_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64954.1|2674308_2674848_+	peroxiredoxin	NA	NA	NA	NA	NA
AUK64955.1|2674954_2675299_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
AUK64956.1|2675356_2676805_-	carnitine dehydratase	NA	NA	NA	NA	NA
AUK66312.1|2676992_2677319_-	hypothetical protein	NA	NA	NA	NA	NA
AUK64957.1|2678955_2680134_+	hypothetical protein	NA	NA	NA	NA	NA
AUK64958.1|2680216_2680717_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
AUK64959.1|2680826_2681528_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
AUK64960.1|2681539_2682004_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK64961.1|2682018_2682294_+	biotin--protein ligase	NA	NA	NA	NA	NA
AUK64962.1|2682290_2683067_+	lipoate--protein ligase	NA	NA	NA	NA	NA
AUK64963.1|2683095_2683923_+	hypothetical protein	NA	NA	NA	NA	NA
AUK64964.1|2684048_2684519_+	hypothetical protein	NA	NA	NA	NA	NA
AUK64965.1|2684645_2685539_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
AUK64966.1|2685586_2686768_+	alpha-hydroxy-acid oxidizing enzyme	NA	NA	NA	NA	NA
AUK64967.1|2686780_2687596_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK64968.1|2687729_2688257_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66313.1|2688253_2688751_-	hypothetical protein	NA	NA	NA	NA	NA
AUK64969.1|2688898_2689276_+	hypothetical protein	NA	NA	NA	NA	NA
AUK64970.1|2689233_2689518_+	hypothetical protein	NA	NA	NA	NA	NA
AUK64971.1|2689497_2690400_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK66314.1|2690546_2691158_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK64972.1|2691392_2692520_+	leucine ABC transporter subunit substrate-binding protein LivK	NA	NA	NA	NA	NA
AUK64973.1|2692630_2693719_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
AUK64974.1|2693771_2694623_-	glycerol-3-phosphate transporter	NA	NA	NA	NA	NA
AUK64975.1|2694642_2695524_-	glycerol-3-phosphate transporter permease	NA	NA	NA	NA	NA
AUK66315.1|2695700_2697014_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK64976.1|2697224_2698058_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
AUK64977.1|2698054_2698636_+	hypothetical protein	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
AUK64978.1|2698989_2699940_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64979.1|2699955_2701071_+	leucine ABC transporter subunit substrate-binding protein LivK	NA	NA	NA	NA	NA
AUK64980.1|2701173_2702100_+	branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
AUK64981.1|2702099_2703338_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
AUK64982.1|2703334_2704102_+	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
AUK64983.1|2704102_2704804_+	branched-chain amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
AUK66316.1|2704885_2705332_-	glutamate racemase	NA	NA	NA	NA	NA
AUK64984.1|2706221_2706860_+	glutathione S-transferase	NA	NA	NA	NA	NA
AUK64985.1|2707628_2708579_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK64986.1|2708677_2709628_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP017883	Bordetella pertussis strain I385, complete genome	4105355	2808755	2863272	4105355	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	49	NA	NA
AUK65068.1|2808755_2809658_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65069.1|2810034_2810640_+	fimbrial protein	NA	NA	NA	NA	NA
AUK65070.1|2810693_2812007_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AUK65071.1|2812081_2812552_-	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AUK65072.1|2812551_2813340_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AUK65073.1|2813350_2815003_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AUK65074.1|2815090_2815993_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK66324.1|2817202_2817709_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AUK65075.1|2817705_2818470_-	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AUK65076.1|2818485_2818770_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AUK65077.1|2818834_2819824_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AUK65078.1|2819995_2820925_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AUK65079.1|2820896_2821583_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AUK65080.1|2821616_2822162_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AUK65081.1|2822206_2823472_+	peptidase M48	NA	NA	NA	NA	NA
AUK65082.1|2823468_2824371_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
AUK65083.1|2825552_2826497_-	peptide ABC transporter	NA	NA	NA	NA	NA
AUK65084.1|2826591_2828109_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK65085.1|2828150_2829779_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AUK65086.1|2829886_2830768_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK65087.1|2831028_2831256_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65088.1|2833880_2834255_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AUK65089.1|2834279_2834618_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK65090.1|2834661_2836296_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AUK65091.1|2836334_2837681_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AUK66325.1|2837788_2839210_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AUK65092.1|2839279_2839864_-	nitroreductase	NA	NA	NA	NA	NA
AUK65093.1|2839966_2840917_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65094.1|2841051_2842158_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK65095.1|2842168_2843266_+	cyclic pyranopterin phosphate synthase	NA	NA	NA	NA	NA
AUK65096.1|2843410_2844616_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AUK65097.1|2844622_2845144_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AUK66326.1|2845140_2845623_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AUK65098.1|2845628_2845880_-	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA	NA
AUK65099.1|2845860_2846346_-	molybdenum cofactor biosynthesis protein C	NA	NA	NA	NA	NA
AUK65100.1|2846481_2849943_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65101.1|2849960_2850845_+	carboxymethylenebutenolidase	NA	NA	NA	NA	NA
AUK65102.1|2850854_2851286_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66327.1|2851532_2852036_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AUK65103.1|2852113_2853514_+	MFS transporter	NA	NA	NA	NA	NA
AUK65104.1|2853588_2854464_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66328.1|2854460_2855468_-	biotin synthase BioB	NA	NA	NA	NA	NA
AUK65105.1|2855935_2856241_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65106.1|2856331_2856922_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK66329.1|2857112_2858129_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK65107.1|2858320_2860657_-	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AUK65108.1|2860739_2861174_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AUK65109.1|2861320_2862223_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65110.1|2862321_2863272_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP017883	Bordetella pertussis strain I385, complete genome	4105355	2871297	2928083	4105355	protease,transposase	uncultured_Mediterranean_phage(28.57%)	41	NA	NA
AUK65117.1|2871297_2872200_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65118.1|2873954_2874221_-	hypothetical protein	NA	NA	NA	NA	NA
AUK65119.1|2874928_2875267_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK65120.1|2876595_2878875_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK65121.1|2879820_2880423_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK65122.1|2880519_2881809_+	MFS transporter	NA	NA	NA	NA	NA
AUK65123.1|2881866_2882598_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AUK65124.1|2882594_2883398_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AUK65125.1|2883394_2884483_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUK65126.1|2884479_2885409_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK65127.1|2885557_2886703_-	branched chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK65128.1|2886724_2887627_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65129.1|2888005_2891827_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AUK65130.1|2891983_2892652_-	hypothetical protein	NA	NA	NA	NA	NA
AUK65131.1|2892656_2894330_-	paraquat-inducible protein B	NA	NA	NA	NA	NA
AUK65132.1|2894348_2895668_-	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AUK65133.1|2895672_2897988_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
AUK66331.1|2898043_2900212_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AUK66332.1|2900208_2904774_-	alpha-2-macroglobulin	NA	NA	NA	NA	NA
AUK65134.1|2905487_2905802_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AUK65135.1|2906029_2906275_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AUK65136.1|2906396_2906888_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	4.8e-14
AUK65137.1|2906987_2908193_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AUK65138.1|2908308_2909706_-	chloride channel protein EriC	NA	NA	NA	NA	NA
AUK65139.1|2909822_2910401_-	superoxide dismutase	NA	NA	NA	NA	NA
AUK65140.1|2910473_2911865_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AUK65141.1|2912032_2912983_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65142.1|2913263_2913884_+	flagellar motor protein MotA	NA	NA	NA	NA	NA
AUK65143.1|2913880_2914294_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AUK65144.1|2914290_2915334_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AUK65145.1|2915389_2915578_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65146.1|2915587_2916352_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AUK65147.1|2916442_2917099_+	adenylate kinase	NA	NA	NA	NA	NA
AUK65148.1|2917190_2917949_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK65149.1|2917974_2919576_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AUK65150.1|2919776_2920781_+	iron dicitrate transport regulator FecR	NA	NA	NA	NA	NA
AUK65151.1|2920881_2921145_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AUK65152.1|2921262_2922039_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AUK65153.1|2922629_2923580_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65154.1|2925963_2927076_-	malate dehydrogenase	NA	NA	NA	NA	NA
AUK65155.1|2927132_2928083_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP017883	Bordetella pertussis strain I385, complete genome	4105355	2950462	3002112	4105355	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
AUK65178.1|2950462_2951326_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65179.1|2951521_2952994_-	magnesium transporter	NA	NA	NA	NA	NA
AUK65180.1|2953004_2953415_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AUK65181.1|2953478_2954525_-	hypothetical protein	NA	NA	NA	NA	NA
AUK65182.1|2954631_2955510_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK65183.1|2955523_2956720_-	amidohydrolase	NA	NA	NA	NA	NA
AUK65184.1|2956781_2958473_+	long-chain fatty acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.4e-33
AUK65185.1|2958469_2959372_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65186.1|2959540_2960437_-	inositol monophosphatase	NA	NA	NA	NA	NA
AUK65187.1|2962714_2964940_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AUK65188.1|2965104_2966193_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AUK65189.1|2966149_2966803_+	DL-methionine transporter permease subunit	NA	NA	NA	NA	NA
AUK65190.1|2966850_2967648_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK65191.1|2968227_2969130_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65192.1|2969210_2970359_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AUK65193.1|2970415_2971366_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65194.1|2971464_2971770_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AUK65195.1|2971798_2972233_-	hypothetical protein	NA	NA	NA	NA	NA
AUK65196.1|2972234_2973479_-	hypothetical protein	NA	NA	NA	NA	NA
AUK65197.1|2973475_2974186_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK66334.1|2974200_2975112_-	hypothetical protein	NA	NA	NA	NA	NA
AUK65198.1|2975474_2975879_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65199.1|2975875_2976334_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65200.1|2976340_2977249_+	hypothetical protein	NA	NA	NA	NA	NA
AUK66335.1|2977245_2978112_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK65201.1|2978098_2978926_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AUK65202.1|2978936_2980064_+	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AUK65203.1|2982421_2983684_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK65204.1|2983690_2984443_+	DNA-binding protein	NA	NA	NA	NA	NA
AUK65205.1|2984494_2984680_-	hypothetical protein	NA	NA	NA	NA	NA
AUK65206.1|2984955_2985420_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AUK65207.1|2985499_2986111_+	3-methyladenine DNA glycosylase	NA	NA	NA	NA	NA
AUK65208.1|2986255_2988364_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65209.1|2988360_2989263_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65210.1|2989414_2990035_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK66336.1|2990138_2990879_+	oxidoreductase	NA	NA	NA	NA	NA
AUK65211.1|2992013_2993138_-	hypothetical protein	NA	NA	NA	NA	NA
AUK65212.1|2993183_2993552_-	hypothetical protein	NA	NA	NA	NA	NA
AUK65213.1|2993793_2994696_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65214.1|2995779_2996322_-	hypothetical protein	NA	NA	NA	NA	NA
AUK65215.1|2996755_2997658_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65216.1|2997654_2998563_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK65217.1|2998689_2999526_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AUK65218.1|3000038_3001148_+	porin	NA	NA	NA	NA	NA
AUK65219.1|3001209_3002112_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP017883	Bordetella pertussis strain I385, complete genome	4105355	3235672	3283290	4105355	tRNA,transposase	Erwinia_phage(10.0%)	46	NA	NA
AUK65405.1|3235672_3236623_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65406.1|3237067_3237379_-	cell division protein ZapA	NA	NA	NA	NA	NA
AUK65407.1|3237378_3237909_-	hypothetical protein	NA	NA	NA	NA	NA
AUK65408.1|3238071_3239022_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65409.1|3239311_3239776_+	tricarboxylate transporter	NA	NA	NA	NA	NA
AUK65410.1|3239790_3241296_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65411.1|3241552_3243157_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AUK65412.1|3243212_3244118_+	oxidoreductase	NA	NA	NA	NA	NA
AUK65413.1|3244558_3245461_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65414.1|3245607_3246510_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65415.1|3246639_3247221_-	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
AUK66349.1|3247645_3247951_+	RND transporter	NA	NA	NA	NA	NA
AUK65416.1|3247964_3249299_-	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AUK65417.1|3249320_3249860_-	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AUK65418.1|3250007_3250472_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AUK65419.1|3250614_3251730_-	cobalamin biosynthesis protein CobW	NA	NA	NA	NA	NA
AUK65420.1|3252006_3252510_-	transcriptional repressor	NA	NA	NA	NA	NA
AUK65421.1|3252647_3252848_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65422.1|3252838_3253561_+	ABC transporter	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AUK65423.1|3253557_3254454_+	zinc ABC transporter permease	NA	NA	NA	NA	NA
AUK65424.1|3254450_3255386_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK65425.1|3255346_3256015_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65426.1|3256005_3256974_+	nickel transporter	NA	NA	NA	NA	NA
AUK65427.1|3257022_3259164_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AUK65428.1|3259176_3260157_-	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
AUK65429.1|3260171_3260864_-	hypothetical protein	NA	NA	NA	NA	NA
AUK65430.1|3260890_3261802_-	diaminopimelate epimerase	NA	NA	NA	NA	NA
AUK65431.1|3261844_3262735_-	acyltransferase	NA	NA	NA	NA	NA
AUK65432.1|3262731_3263586_-	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA	NA
AUK65433.1|3263869_3265033_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
AUK65434.1|3265143_3265395_+	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AUK65435.1|3265474_3266515_+	alpha-mannosyltransferase	NA	NA	NA	NA	NA
AUK65436.1|3266794_3268213_+	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AUK65437.1|3268283_3268619_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65438.1|3268618_3269461_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AUK65439.1|3269607_3270510_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65440.1|3270574_3271546_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK65441.1|3271609_3272629_-	acetylpolyamine amidohydrolase	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
AUK65442.1|3272630_3273971_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK66350.1|3274281_3274962_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AUK66351.1|3275037_3277101_+	lytic transglycosylase	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.3e-14
AUK65443.1|3277097_3278192_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
AUK65444.1|3278206_3279397_-	hypothetical protein	NA	NA	NA	NA	NA
AUK65445.1|3279485_3281174_-	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
AUK65446.1|3281448_3282201_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
AUK65447.1|3282339_3283290_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP017883	Bordetella pertussis strain I385, complete genome	4105355	3293217	3333167	4105355	integrase,protease,tRNA,transposase	Klosneuvirus(33.33%)	27	3316014:3316032	3335902:3335920
AUK65457.1|3293217_3294168_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65458.1|3294695_3295469_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK65459.1|3295601_3296612_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUK65460.1|3296763_3298419_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AUK65461.1|3298473_3298815_-	cupin	NA	NA	NA	NA	NA
AUK65462.1|3298828_3300268_-	amine oxidase	NA	NA	NA	NA	NA
AUK65463.1|3300400_3301216_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AUK65464.1|3301457_3302360_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65465.1|3303753_3304695_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65466.1|3304921_3305662_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK65467.1|3305747_3306650_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65468.1|3308139_3309711_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK65469.1|3310043_3311897_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65470.1|3311941_3314506_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
3316014:3316032	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AUK65471.1|3316658_3316955_-	hypothetical protein	NA	A0A1V0SIN4	Klosneuvirus	34.1	5.5e-05
AUK65472.1|3317024_3317936_-	hypothetical protein	NA	NA	NA	NA	NA
AUK65473.1|3318005_3318251_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65474.1|3318479_3318737_-	hypothetical protein	NA	NA	NA	NA	NA
AUK65475.1|3319251_3320154_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65476.1|3320385_3321597_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AUK65477.1|3321612_3324564_-	site-specific DNA-methyltransferase	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AUK66354.1|3324565_3327322_-	restriction endonuclease	NA	NA	NA	NA	NA
AUK65478.1|3327832_3328879_-	cell filamentation protein Fic	NA	NA	NA	NA	NA
AUK65479.1|3329220_3330348_-|integrase	integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AUK65480.1|3330627_3331719_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AUK65481.1|3331791_3332574_-|protease	CAAX protease	protease	NA	NA	NA	NA
AUK65482.1|3332570_3333167_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
3335902:3335920	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
>prophage 28
CP017883	Bordetella pertussis strain I385, complete genome	4105355	3382105	3435798	4105355	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
AUK65520.1|3382105_3382969_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65521.1|3383460_3384105_-	urease accessory protein UreG	NA	NA	NA	NA	NA
AUK65522.1|3384129_3384714_-	urease accessory protein UreF	NA	NA	NA	NA	NA
AUK65523.1|3384814_3385432_-	urease accessory protein UreE	NA	NA	NA	NA	NA
AUK65524.1|3385434_3387150_-	urease subunit alpha	NA	NA	NA	NA	NA
AUK65525.1|3387146_3387455_-	urease subunit beta	NA	NA	NA	NA	NA
AUK66357.1|3387471_3388089_-	urease accessory protein UreJ	NA	NA	NA	NA	NA
AUK65526.1|3388133_3388436_-	urease subunit gamma	NA	NA	NA	NA	NA
AUK65527.1|3388536_3389391_-	urease accessory protein	NA	NA	NA	NA	NA
AUK65528.1|3390662_3391070_-	aldehyde-activating protein	NA	NA	NA	NA	NA
AUK65529.1|3391439_3392234_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK65530.1|3392334_3393570_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AUK65531.1|3393638_3394655_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUK65532.1|3394666_3396043_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65533.1|3396039_3397236_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65534.1|3397232_3398771_-	SpoVR family protein	NA	NA	NA	NA	NA
AUK65535.1|3398767_3400027_-	hypothetical protein	NA	NA	NA	NA	NA
AUK65536.1|3401967_3402870_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65537.1|3403684_3404779_-	CoA transferase	NA	NA	NA	NA	NA
AUK65538.1|3404771_3406106_-	CoA ligase	NA	NA	NA	NA	NA
AUK65539.1|3406059_3406743_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK65540.1|3406768_3407932_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK65541.1|3407928_3408930_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK65542.1|3408929_3409802_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK65543.1|3409798_3410548_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AUK65544.1|3410544_3411336_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AUK65545.1|3411332_3412472_-	ABC transporter	NA	NA	NA	NA	NA
AUK65546.1|3412747_3413533_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK65547.1|3413566_3414349_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK65548.1|3414352_3414742_+	DNA-binding protein	NA	NA	NA	NA	NA
AUK65549.1|3415881_3416745_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK65550.1|3416780_3417869_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65551.1|3417865_3418768_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65552.1|3419169_3422148_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65553.1|3423074_3423953_+	fatty acid desaturase	NA	NA	NA	NA	NA
AUK65554.1|3423988_3424321_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65555.1|3424299_3425820_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65556.1|3425901_3426852_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65557.1|3426848_3427316_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AUK65558.1|3427358_3428129_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUK65559.1|3428149_3428950_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AUK65560.1|3428960_3430370_+	lytic transglycosylase	NA	NA	NA	NA	NA
AUK65561.1|3430464_3431250_+	enoyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA	NA
AUK66358.1|3431489_3432506_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK65562.1|3432613_3433006_-	osmotically inducible protein OsmC	NA	NA	NA	NA	NA
AUK65563.1|3433143_3433824_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65564.1|3433828_3434800_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK65565.1|3434895_3435798_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP017883	Bordetella pertussis strain I385, complete genome	4105355	3442001	3501251	4105355	tRNA,transposase	Acinetobacter_phage(27.27%)	50	NA	NA
AUK65569.1|3442001_3443765_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AUK65570.1|3443876_3444755_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AUK65571.1|3444867_3445683_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AUK65572.1|3445686_3445938_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
AUK66359.1|3446022_3447039_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK65573.1|3447369_3447591_-	hypothetical protein	NA	NA	NA	NA	NA
AUK66360.1|3449951_3450818_-	EamA family transporter	NA	NA	NA	NA	NA
AUK65574.1|3451366_3452575_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK65575.1|3452654_3454226_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK65576.1|3454343_3455279_-	glycosyl transferase	NA	NA	NA	NA	NA
AUK65577.1|3455467_3456412_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AUK65578.1|3456480_3456651_-	hypothetical protein	NA	NA	NA	NA	NA
AUK65579.1|3456979_3462697_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AUK65580.1|3462702_3463830_+	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AUK65581.1|3463885_3464512_+	aminotransferase	NA	NA	NA	NA	NA
AUK66361.1|3464783_3465800_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK65582.1|3465895_3466606_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK66362.1|3466602_3467592_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK65583.1|3467687_3469319_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AUK65584.1|3469321_3470059_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK65585.1|3470214_3471087_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AUK65586.1|3471436_3472576_+	MFS transporter	NA	NA	NA	NA	NA
AUK65587.1|3472572_3473232_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AUK65588.1|3473303_3473936_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AUK65589.1|3473965_3474484_+	flavin reductase	NA	NA	NA	NA	NA
AUK65590.1|3474494_3475604_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AUK65591.1|3475650_3476505_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AUK65592.1|3476506_3477409_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK65593.1|3478631_3479582_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65594.1|3479678_3480812_-	hypothetical protein	NA	NA	NA	NA	NA
AUK65595.1|3480848_3481097_-	hypothetical protein	NA	NA	NA	NA	NA
AUK65596.1|3481336_3482326_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65597.1|3482501_3483290_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AUK65598.1|3483286_3484318_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AUK65599.1|3484336_3484900_-	anthranilate/aminodeoxychorismate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AUK65600.1|3484955_3486476_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AUK65601.1|3486739_3487444_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AUK65602.1|3487451_3488180_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AUK65603.1|3488294_3488669_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AUK65604.1|3488711_3490001_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65605.1|3489997_3491167_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AUK65606.1|3491193_3492003_+	disulfide bond formation protein DsbC	NA	NA	NA	NA	NA
AUK65607.1|3492062_3492998_+	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AUK65608.1|3493010_3493961_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65609.1|3494059_3495022_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AUK65610.1|3495053_3495413_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AUK65611.1|3495537_3496440_+	oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AUK66363.1|3496441_3498208_-	peptidase M61	NA	NA	NA	NA	NA
AUK65612.1|3498248_3499025_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK65613.1|3500348_3501251_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
CP017883	Bordetella pertussis strain I385, complete genome	4105355	3516237	3574310	4105355	holin,tRNA,transposase	Catovirus(12.5%)	50	NA	NA
AUK65626.1|3516237_3517188_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65627.1|3517316_3518450_-	peptidase	NA	NA	NA	NA	NA
AUK65628.1|3518493_3519399_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK65629.1|3521098_3522019_-	peptide ABC transporter permease	NA	NA	NA	NA	NA
AUK65630.1|3522026_3523004_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK65631.1|3523062_3524022_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AUK65632.1|3526071_3526308_-	hypothetical protein	NA	NA	NA	NA	NA
AUK65633.1|3526434_3527298_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AUK65634.1|3527386_3528208_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK65635.1|3528287_3529025_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK65636.1|3529021_3530014_-	2-nitropropane dioxygenase	NA	NA	NA	NA	NA
AUK66366.1|3530166_3530790_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK65637.1|3530834_3531983_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK65638.1|3534354_3535257_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65639.1|3535597_3536548_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65640.1|3536694_3537597_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65641.1|3537893_3538391_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65642.1|3538433_3540209_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65643.1|3540216_3541083_+	copper resistance protein	NA	NA	NA	NA	NA
AUK66367.1|3541089_3541815_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK65644.1|3541984_3542215_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65645.1|3542252_3542474_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65646.1|3542993_3543764_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK65647.1|3544077_3544668_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AUK65648.1|3544701_3546030_-	amidase	NA	NA	NA	NA	NA
AUK65649.1|3546104_3547250_-	transporter	NA	NA	NA	NA	NA
AUK65650.1|3547361_3548360_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65651.1|3548322_3548757_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AUK65652.1|3550273_3551158_+	EamA family transporter	NA	NA	NA	NA	NA
AUK65653.1|3551154_3552360_-	cardiolipin synthase B	NA	NA	NA	NA	NA
AUK65654.1|3552356_3553217_-	endonuclease	NA	NA	NA	NA	NA
AUK65655.1|3553329_3555120_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AUK66368.1|3555160_3555805_-	hypothetical protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
AUK65656.1|3555826_3556135_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AUK66369.1|3556300_3557587_-	hypothetical protein	NA	NA	NA	NA	NA
AUK65657.1|3557713_3558973_-|holin	choline dehydrogenase	holin	A0A2I2L3D3	Orpheovirus	27.6	6.1e-13
AUK65658.1|3559020_3559971_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65659.1|3561922_3563137_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AUK65660.1|3563242_3564232_+	D-arabinose 5-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AUK65661.1|3564228_3564837_+	phenylphosphate carboxylase subunit delta	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AUK65662.1|3564849_3565479_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AUK65663.1|3565475_3566096_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AUK65664.1|3566127_3566919_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AUK65665.1|3567272_3567494_+	ribosomal subunit interface protein	NA	NA	NA	NA	NA
AUK65666.1|3567770_3568226_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AUK65667.1|3568244_3569171_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AUK65668.1|3569224_3570511_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AUK65669.1|3571441_3572314_+	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AUK65670.1|3572310_3573261_+	hypothetical protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AUK65671.1|3573407_3574310_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
CP017883	Bordetella pertussis strain I385, complete genome	4105355	3705431	3748602	4105355	integrase,tRNA,transposase	Streptococcus_phage(11.11%)	41	3743441:3743459	3749225:3749243
AUK65779.1|3705431_3706334_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65780.1|3706481_3707384_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65781.1|3707380_3708016_-	lysine transporter LysE	NA	NA	NA	NA	NA
AUK65782.1|3708145_3709045_+	transcriptional regulator ArgP	NA	NA	NA	NA	NA
AUK65783.1|3709140_3709632_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65784.1|3709678_3710644_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK65785.1|3711777_3713019_+	2-aminoadipate aminotransferase	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
AUK65786.1|3713132_3714149_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
AUK65787.1|3714183_3714660_-	hypothetical protein	NA	NA	NA	NA	NA
AUK65788.1|3714802_3715711_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
AUK65789.1|3715824_3716937_-	DNA protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
AUK66378.1|3717037_3717523_-	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AUK65790.1|3717659_3718910_+	kynureninase	NA	NA	NA	NA	NA
AUK65791.1|3719011_3719524_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
AUK65792.1|3719622_3720573_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65793.1|3720638_3721577_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
AUK65794.1|3721599_3722226_-	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AUK65795.1|3722222_3722879_-	HAD family hydrolase	NA	NA	NA	NA	NA
AUK65796.1|3722875_3723478_-	hypothetical protein	NA	NA	NA	NA	NA
AUK65797.1|3723484_3724072_-	Rossman fold protein, TIGR00730 family	NA	A0A2I2L3F0	Orpheovirus	23.3	1.1e-07
AUK65798.1|3724252_3724822_+	bacterioferritin	NA	NA	NA	NA	NA
AUK65799.1|3724892_3726212_-	ribosomal protein S12 methylthiotransferase	NA	NA	NA	NA	NA
AUK65800.1|3726318_3726510_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AUK65801.1|3726761_3728051_+	glycine/D-amino acid oxidase	NA	NA	NA	NA	NA
AUK65802.1|3728205_3729201_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65803.1|3729285_3729960_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK65804.1|3729956_3730859_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65805.1|3731068_3732310_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
AUK65806.1|3732306_3733251_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
AUK65807.1|3733417_3734320_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65808.1|3734279_3735209_-	hypothetical protein	NA	NA	NA	NA	NA
AUK65809.1|3735262_3735598_-	alkylhydroperoxidase	NA	NA	NA	NA	NA
AUK65810.1|3735642_3736407_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK65811.1|3736430_3737171_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK65812.1|3737178_3738732_-	long-chain fatty acid--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	1.5e-13
AUK65813.1|3738766_3739744_-	hypothetical protein	NA	NA	NA	NA	NA
AUK65814.1|3740016_3740598_-	ureidoglycolate hydrolase	NA	NA	NA	NA	NA
AUK65815.1|3740649_3747783_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
3743441:3743459	attL	GCGACCCGCAGCGTGCCGG	NA	NA	NA	NA
AUK65816.1|3747998_3748130_-	entericidin	NA	NA	NA	NA	NA
AUK66379.1|3748161_3748287_-	hypothetical protein	NA	NA	NA	NA	NA
AUK65817.1|3748395_3748602_-|integrase	integrase	integrase	NA	NA	NA	NA
3749225:3749243	attR	GCGACCCGCAGCGTGCCGG	NA	NA	NA	NA
>prophage 32
CP017883	Bordetella pertussis strain I385, complete genome	4105355	3754537	3790212	4105355	integrase,transposase	Burkholderia_phage(11.11%)	37	3751076:3751093	3795716:3795733
3751076:3751093	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
AUK65824.1|3754537_3755440_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65825.1|3755450_3756092_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65826.1|3756258_3756501_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65827.1|3756647_3757550_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65828.1|3757585_3758053_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
AUK65829.1|3758286_3758664_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65830.1|3758660_3758843_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65831.1|3758846_3759833_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
AUK65832.1|3759829_3760477_+	exonuclease	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
AUK65833.1|3760534_3761062_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65834.1|3761098_3762283_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
AUK65835.1|3762293_3762635_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
AUK65836.1|3762627_3762747_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65837.1|3762747_3762948_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65838.1|3762944_3763934_-|integrase	integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
AUK65839.1|3765420_3767391_-	hypothetical protein	NA	NA	NA	NA	NA
AUK65840.1|3767632_3768031_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65841.1|3768039_3768963_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK65842.1|3769468_3770371_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65843.1|3770601_3772293_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
AUK65844.1|3772341_3772614_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
AUK65845.1|3772610_3772982_-	ribonuclease P protein component	NA	NA	NA	NA	NA
AUK65846.1|3773077_3773212_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
AUK65847.1|3773617_3775027_+	chromosomal replication initiation protein DnaA	NA	NA	NA	NA	NA
AUK65848.1|3775029_3776139_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
AUK65849.1|3776233_3778687_+	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
AUK65850.1|3778805_3779597_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK65851.1|3779716_3781144_+	amidase	NA	NA	NA	NA	NA
AUK66380.1|3781182_3782154_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK65852.1|3782238_3782442_+	hypothetical protein	NA	NA	NA	NA	NA
AUK65853.1|3782572_3783736_+	alpha-hydroxy-acid oxidizing enzyme	NA	NA	NA	NA	NA
AUK65854.1|3783823_3784669_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK65855.1|3786273_3787176_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK65856.1|3787172_3787517_-	hypothetical protein	NA	NA	NA	NA	NA
AUK65857.1|3787730_3788105_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AUK65858.1|3788179_3789238_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AUK65859.1|3789261_3790212_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
3795716:3795733	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
