The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP017882	Bordetella pertussis strain I384, complete genome	4108491	0	64055	4108491	transposase,protease,tRNA	Natrialba_phage(12.5%)	57	NA	NA
AUK59132.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AUK59133.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
AUK59134.1|2605_3403_+	chromosome partitioning protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AUK59135.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK59136.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AUK59137.1|5124_5910_+	L-asparaginase	NA	NA	NA	NA	NA
AUK59138.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59139.1|6721_7912_+	translation elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AUK59140.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AUK59141.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AUK59142.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AUK59143.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AUK59144.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AUK59145.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AUK59146.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AUK59147.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AUK62503.1|20126_20531_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59148.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59149.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AUK62504.1|26575_27286_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59150.1|27282_28185_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59151.1|28314_28614_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59152.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59153.1|29141_30359_-	thiolase	NA	NA	NA	NA	NA
AUK59154.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AUK59155.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK62505.1|32214_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK59156.1|33048_34470_+	2-methylcitrate dehydratase	NA	NA	NA	NA	NA
AUK59157.1|34673_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59158.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AUK59159.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AUK59160.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AUK59161.1|40060_40600_+	D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AUK59162.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AUK59163.1|41318_42212_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59164.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AUK59165.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AUK59166.1|43346_43526_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59167.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62506.1|45224_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59168.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AUK59169.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59170.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AUK59171.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AUK59172.1|50189_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59173.1|51134_52391_+	muropeptide transporter AmpG	NA	NA	NA	NA	NA
AUK59174.1|53622_54357_-	glutamate racemase	NA	NA	NA	NA	NA
AUK59175.1|54362_54953_-	arginine transporter ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AUK59176.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK59177.1|55663_56425_-	glutamate ABC transporter permease	NA	NA	NA	NA	NA
AUK59178.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK59179.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59180.1|59248_60475_-	serine kinase HipA	NA	NA	NA	NA	NA
AUK59181.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK62507.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59182.1|62442_63417_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59183.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
>prophage 2
CP017882	Bordetella pertussis strain I384, complete genome	4108491	69133	122073	4108491	transposase,tRNA	Planktothrix_phage(20.0%)	53	NA	NA
AUK59189.1|69133_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59190.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AUK59191.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AUK59192.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AUK59193.1|74357_74939_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AUK59194.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59195.1|75280_76123_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59196.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AUK59197.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62508.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59198.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AUK59199.1|82822_83527_-	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AUK59200.1|83523_84630_-	glycosyl transferase	NA	NA	NA	NA	NA
AUK59201.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AUK59202.1|85481_86669_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AUK59203.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AUK59204.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AUK59205.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AUK59206.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AUK59207.1|90793_91846_-	oxidoreductase	NA	NA	NA	NA	NA
AUK59208.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AUK59209.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AUK59210.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59211.1|94468_95272_-	pantothenate kinase	NA	NA	NA	NA	NA
AUK59212.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AUK59213.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK59214.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AUK59215.1|98332_98800_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59216.1|98889_99111_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59217.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59218.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK62509.1|100607_101786_+	peptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	5.8e-66
AUK59219.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AUK59220.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AUK59221.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AUK59222.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AUK59223.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AUK59224.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AUK59225.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AUK59226.1|107427_108330_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59227.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AUK59228.1|110552_111182_-	thiol:disulfide interchange protein	NA	NA	NA	NA	NA
AUK59229.1|111243_111927_-	cell division protein	NA	NA	NA	NA	NA
AUK59230.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AUK62510.1|113906_114254_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59231.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62511.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK59232.1|116036_116837_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK59233.1|116833_117709_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK59234.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK59235.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AUK59236.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AUK59237.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP017882	Bordetella pertussis strain I384, complete genome	4108491	164893	226453	4108491	transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(12.5%)	52	NA	NA
AUK59274.1|164893_165844_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59275.1|165942_166893_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59276.1|168336_169239_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59277.1|169216_169846_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59278.1|170128_171559_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
AUK59279.1|171592_172222_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AUK59280.1|172270_173878_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AUK59281.1|173914_174586_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62513.1|174667_175144_-	bacterioferritin	NA	NA	NA	NA	NA
AUK59282.1|175398_176301_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59283.1|177416_177944_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59284.1|178035_178851_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59285.1|178911_179646_+	sulfurtransferase	NA	NA	NA	NA	NA
AUK59286.1|179683_181762_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AUK59287.1|182011_182284_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59288.1|182385_183471_+	ATP-binding protein	NA	NA	NA	NA	NA
AUK59289.1|183474_185379_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59290.1|185375_189050_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59291.1|189110_189674_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AUK59292.1|189681_190104_-	glyoxalase	NA	NA	NA	NA	NA
AUK59293.1|190131_190551_-	glyoxalase	NA	NA	NA	NA	NA
AUK59294.1|190579_190927_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK62514.1|191200_191650_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59295.1|191804_194075_+	lysine decarboxylase	NA	NA	NA	NA	NA
AUK59296.1|194150_195356_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59297.1|195502_196405_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59298.1|196507_197143_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
AUK59299.1|197139_198033_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AUK59300.1|198427_199528_+	glycine cleavage system protein T	NA	NA	NA	NA	NA
AUK59301.1|199609_199984_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AUK59302.1|200043_202908_+	glycine dehydrogenase (aminomethyl-transferring)	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AUK59303.1|203052_203793_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK59304.1|203862_205074_+	formyl-CoA transferase	NA	NA	NA	NA	NA
AUK59305.1|205102_206071_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59306.1|206732_207635_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59307.1|207791_208115_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AUK62515.1|208219_209260_-	cyclase	NA	NA	NA	NA	NA
AUK59308.1|209265_210045_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AUK59309.1|210090_210387_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59310.1|210412_210688_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AUK59311.1|210744_211389_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AUK59312.1|211388_212075_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AUK62516.1|212273_213056_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK59313.1|213106_213832_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK59314.1|213863_215213_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AUK59315.1|215324_216257_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK59316.1|216714_219510_-	peptidase S8	NA	NA	NA	NA	NA
AUK59317.1|220103_222947_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AUK59318.1|223117_223837_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AUK59319.1|223875_224424_-	GNAT family N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AUK59320.1|224578_225478_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AUK59321.1|225502_226453_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP017882	Bordetella pertussis strain I384, complete genome	4108491	234385	287973	4108491	transposase,protease,tRNA	Bacillus_phage(22.22%)	49	NA	NA
AUK59328.1|234385_235336_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59329.1|235422_236373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59330.1|236369_237320_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59331.1|237418_238216_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AUK59332.1|239165_239576_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AUK59333.1|239825_240581_+	gamma-hydroxybutyrate dehydrogenase	NA	D2K0C8	Staphylococcus_phage	55.0	4.6e-32
AUK59334.1|240597_241341_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK59335.1|241384_242428_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK62517.1|243441_244701_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59336.1|246111_247068_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59337.1|247086_247578_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AUK59338.1|247574_248930_-	poly(A) polymerase	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AUK59339.1|248930_249629_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59340.1|249625_250327_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AUK59341.1|250579_251629_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AUK59342.1|251734_252676_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AUK59343.1|252672_254562_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AUK62518.1|254666_255287_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59344.1|255429_256815_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
AUK59345.1|256745_257282_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AUK59346.1|257433_258825_+	fumarate hydratase, class II	NA	NA	NA	NA	NA
AUK59347.1|258841_259822_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59348.1|259957_260941_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK59349.1|261005_261905_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK59350.1|262011_263766_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AUK59351.1|263773_264898_-	carnitine dehydratase	NA	NA	NA	NA	NA
AUK59352.1|264911_265892_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK59353.1|266622_267573_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59354.1|267587_267959_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59355.1|268132_268678_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AUK59356.1|268803_270381_+	cytochrome d terminal oxidase subunit 1	NA	NA	NA	NA	NA
AUK59357.1|270396_271551_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AUK59358.1|271564_271690_+	cyd operon protein YbgT	NA	NA	NA	NA	NA
AUK59359.1|271686_273438_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AUK59360.1|273434_275114_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AUK59361.1|275176_275725_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
AUK59362.1|276867_277146_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59363.1|278189_279140_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59364.1|279417_279579_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AUK59365.1|279586_279727_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59366.1|280245_280695_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AUK59367.1|280704_281316_-	glutathione S-transferase	NA	NA	NA	NA	NA
AUK59368.1|281474_282323_-	cytochrome c1	NA	NA	NA	NA	NA
AUK59369.1|282348_283731_-	cytochrome b	NA	NA	NA	NA	NA
AUK62519.1|283795_284437_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AUK59370.1|284576_285035_+	large-conductance mechanosensitive channel protein	NA	NA	NA	NA	NA
AUK59371.1|285059_285836_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AUK62520.1|285889_287026_+	2-alkenal reductase	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AUK59372.1|287022_287973_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP017882	Bordetella pertussis strain I384, complete genome	4108491	391906	449415	4108491	transposase	Orpheovirus(14.29%)	50	NA	NA
AUK59471.1|391906_392857_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59472.1|392999_393911_+	reductase	NA	NA	NA	NA	NA
AUK59473.1|393907_394156_+	NrdH-redoxin	NA	NA	NA	NA	NA
AUK59474.1|394152_395358_+	CoA transferase	NA	NA	NA	NA	NA
AUK59475.1|395430_396426_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59476.1|396448_397669_-	acyl-CoA transferase	NA	NA	NA	NA	NA
AUK59477.1|397665_398310_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59478.1|398306_398699_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59479.1|398587_399940_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59480.1|400040_400850_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK62526.1|401154_402108_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
AUK59481.1|402206_403190_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59482.1|403866_404637_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK59483.1|404633_405812_-	carnitine dehydratase	NA	NA	NA	NA	NA
AUK59484.1|405979_407686_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AUK59485.1|407682_408579_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK59486.1|408619_410209_-	sulfurtransferase	NA	NA	NA	NA	NA
AUK59487.1|410258_411251_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59488.1|411319_411919_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59489.1|412379_413360_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59490.1|413435_414338_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59491.1|414474_415389_+	EamA family transporter	NA	NA	NA	NA	NA
AUK59492.1|415385_416045_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59493.1|416134_417058_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AUK59494.1|417063_417519_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59495.1|417515_418619_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59496.1|418806_420426_-	dolichyl-phosphate-mannose--protein mannosyltransferase	NA	NA	NA	NA	NA
AUK59497.1|420422_421481_-	glycosyltransferase	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AUK59498.1|421610_422105_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK59499.1|422197_423175_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59500.1|423370_424576_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
AUK59501.1|424572_426084_+	TRAP ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK62527.1|426099_427413_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AUK59502.1|427603_427783_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59503.1|428192_428927_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AUK59504.1|431419_432322_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59505.1|432453_432852_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AUK59506.1|433262_433733_-	universal stress protein	NA	NA	NA	NA	NA
AUK59507.1|433821_434166_-	TIGR01244 family protein	NA	NA	NA	NA	NA
AUK59508.1|434265_435666_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK59509.1|437454_437973_-	methyltransferase	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AUK59510.1|438083_438839_+	hypothetical protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AUK59511.1|439034_440267_+	CoA transferase	NA	NA	NA	NA	NA
AUK59512.1|440259_441045_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK59513.1|441111_442083_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK59514.1|442093_443071_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK59515.1|443196_444369_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK59516.1|444395_445424_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK59517.1|445489_446683_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AUK59518.1|448464_449415_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP017882	Bordetella pertussis strain I384, complete genome	4108491	620802	721266	4108491	tail,transposase,tRNA,terminase	uncultured_Caudovirales_phage(14.29%)	110	NA	NA
AUK59671.1|620802_621753_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59672.1|622451_622835_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59673.1|622892_623495_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62534.1|623512_623914_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59674.1|624029_624941_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK59675.1|624937_625519_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AUK62535.1|626322_627048_+	arginyltransferase	NA	NA	NA	NA	NA
AUK59676.1|627088_628138_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AUK59677.1|628285_628864_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA	NA
AUK59678.1|629250_630228_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK59679.1|630321_634716_-	dermonecrotic toxin	NA	NA	NA	NA	NA
AUK59680.1|634916_635765_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK59681.1|635923_636736_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
AUK59682.1|636791_637742_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59683.1|637840_638641_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59684.1|638702_639086_+	thiol reductase thioredoxin	NA	NA	NA	NA	NA
AUK59685.1|639097_640531_-	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AUK59686.1|640737_641067_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59687.1|641069_641819_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59688.1|642001_642922_+	branched chain amino acid aminotransferase	NA	NA	NA	NA	NA
AUK59689.1|642968_643181_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59690.1|643203_643626_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AUK59691.1|643642_644743_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK59692.1|644839_646357_-	peptidase	NA	NA	NA	NA	NA
AUK59693.1|646432_647272_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AUK62536.1|647293_648166_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59694.1|648256_649351_-	porin	NA	NA	NA	NA	NA
AUK59695.1|649644_650547_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62537.1|650669_651611_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59696.1|651694_652054_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59697.1|652435_653473_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59698.1|653789_655130_+	Xaa-Pro aminopeptidase	NA	NA	NA	NA	NA
AUK59699.1|655139_655592_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59700.1|655697_656870_+	monooxygenase	NA	NA	NA	NA	NA
AUK59701.1|656935_657961_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AUK59702.1|658001_658241_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AUK59703.1|658310_659900_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AUK59704.1|659899_660448_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AUK59705.1|660528_661101_+	Holliday junction DNA helicase RuvA	NA	NA	NA	NA	NA
AUK59706.1|661119_662031_-	NAD-dependent dehydratase	NA	NA	NA	NA	NA
AUK59707.1|662104_663073_-	serine dehydratase	NA	NA	NA	NA	NA
AUK59708.1|663195_664269_+	Holliday junction DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AUK59709.1|664273_666094_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AUK59710.1|666170_667073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59711.1|667209_667545_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59712.1|667678_668329_+	carbonate dehydratase	NA	NA	NA	NA	NA
AUK59713.1|668350_669769_-	amidase	NA	NA	NA	NA	NA
AUK59714.1|669838_670594_-	hypothetical protein	NA	NA	NA	NA	NA
AUK62538.1|670562_671321_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK59715.1|671331_672213_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK59716.1|672229_672937_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AUK59717.1|672939_673698_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AUK59718.1|673907_675650_+	sulfite reductase	NA	NA	NA	NA	NA
AUK59719.1|675642_676167_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59720.1|676206_677001_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK59721.1|677168_678242_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59722.1|678340_679291_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59723.1|679542_679749_-	hypothetical protein	NA	NA	NA	NA	NA
AUK62539.1|679820_680432_-	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AUK59724.1|680911_681232_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59725.1|681224_681923_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59726.1|681937_682159_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59727.1|682176_683127_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59728.1|683766_684252_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
AUK59729.1|684238_685516_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AUK59730.1|685518_686937_+	hypothetical protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AUK59731.1|686908_688021_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	49.7	2.1e-102
AUK59732.1|688026_688269_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AUK59733.1|688391_688994_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AUK59734.1|689422_690373_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59735.1|691047_691299_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59736.1|691361_691844_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AUK59737.1|691845_692046_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59738.1|692045_692441_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AUK59739.1|692437_692836_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AUK59740.1|692832_693255_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59741.1|693262_693763_+	hypothetical protein	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AUK59742.1|694017_694536_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AUK59743.1|694545_694875_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AUK59744.1|694892_695183_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AUK59745.1|695208_697821_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AUK59746.1|697830_698190_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59747.1|698257_698791_+	hypothetical protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AUK59748.1|698787_699177_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AUK59749.1|699169_703126_+	hypothetical protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AUK59750.1|703130_703547_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59751.1|703765_704029_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AUK59752.1|704028_704841_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59753.1|704845_705088_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59754.1|705066_705618_+	lysozyme	NA	NA	NA	NA	NA
AUK59755.1|705617_706133_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59756.1|706129_706411_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59757.1|706410_706632_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59758.1|706960_707632_-	hypothetical protein	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AUK59759.1|707559_707928_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59760.1|707987_708674_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AUK59761.1|708654_709227_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AUK59762.1|709292_711023_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AUK59763.1|711075_711504_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AUK59764.1|711506_712187_+	protein TolQ	NA	NA	NA	NA	NA
AUK59765.1|712186_712645_+	protein TolR	NA	NA	NA	NA	NA
AUK59766.1|712681_713656_+	protein TolA	NA	NA	NA	NA	NA
AUK59767.1|713672_714989_+	Tol-Pal system beta propeller repeat protein TolB	NA	NA	NA	NA	NA
AUK59768.1|715020_715518_+	peptidoglycan-associated lipoprotein	NA	NA	NA	NA	NA
AUK59769.1|715604_716294_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AUK59770.1|716293_717343_+	iron-siderophore ABC transporter permease	NA	NA	NA	NA	NA
AUK59771.1|717339_718134_+	iron ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AUK59772.1|718302_718653_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59773.1|718628_719186_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59774.1|720315_721266_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP017882	Bordetella pertussis strain I384, complete genome	4108491	748191	821305	4108491	transposase	Streptococcus_phage(16.67%)	59	NA	NA
AUK59795.1|748191_749142_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59796.1|749796_750894_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AUK59797.1|750927_752193_+	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AUK59798.1|752398_753301_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59799.1|753342_753498_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59800.1|753544_754135_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AUK62541.1|754150_756595_-	ligand-gated channel	NA	NA	NA	NA	NA
AUK59801.1|756714_757686_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59802.1|757817_758342_+	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AUK59803.1|758301_759252_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59804.1|759473_761669_-	DNA methylase	NA	NA	NA	NA	NA
AUK62542.1|761741_762089_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK59805.1|762271_763222_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59806.1|763337_763760_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK59807.1|763843_764638_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK59808.1|764803_765940_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AUK59809.1|766010_767144_-	GTPase ObgE	NA	NA	NA	NA	NA
AUK59810.1|767293_767554_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
AUK59811.1|767587_767899_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
AUK59812.1|768323_769472_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AUK59813.1|769586_770552_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AUK59814.1|770820_771687_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK59815.1|771817_773866_+	hydantoinase	NA	NA	NA	NA	NA
AUK59816.1|773883_775881_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AUK59817.1|775915_777253_+	amino acid deaminase	NA	NA	NA	NA	NA
AUK59818.1|779423_780905_+	succinate-semialdehyde dehydrogenase (NADP(+))	NA	NA	NA	NA	NA
AUK59819.1|780920_781478_-	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AUK62543.1|781590_781770_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59820.1|781854_787077_+	hemolysin	NA	NA	NA	NA	NA
AUK59821.1|787154_789293_+	peptidase C39	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AUK59822.1|789289_790612_+	hemolysin D	NA	NA	NA	NA	NA
AUK59823.1|790613_792038_+	CyaE	NA	NA	NA	NA	NA
AUK59824.1|792128_793037_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK59825.1|793101_794016_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK59826.1|794422_794656_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59827.1|794853_795537_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK59828.1|795568_796297_+	arginine transporter ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
AUK59829.1|796326_797187_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AUK59830.1|797194_797761_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59831.1|797849_798806_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK59832.1|798850_799603_-	3-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK59833.1|799599_801345_-	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AUK59834.1|801429_802164_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK59835.1|802480_803503_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK62544.1|803518_804154_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK59836.1|804385_805393_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AUK59837.1|805433_806966_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AUK59838.1|806962_808081_-	deacylase	NA	NA	NA	NA	NA
AUK59839.1|808077_808860_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK59840.1|808871_809735_-	ABC transporter	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AUK62545.1|809753_810851_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59841.1|810919_811846_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59842.1|811880_813575_-	acetolactate synthase	NA	NA	NA	NA	NA
AUK59843.1|813774_814668_-	mechanosensitive ion channel protein	NA	NA	NA	NA	NA
AUK59844.1|814815_815766_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59845.1|815864_816521_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59846.1|816668_819377_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AUK59847.1|819386_820406_+	fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AUK59848.1|820402_821305_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP017882	Bordetella pertussis strain I384, complete genome	4108491	859796	913927	4108491	transposase,holin	Vibrio_phage(25.0%)	44	NA	NA
AUK59881.1|859796_861755_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AUK59882.1|861837_862788_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59883.1|863008_863677_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK59884.1|863800_864907_+	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AUK59885.1|864919_868033_+	multidrug efflux protein	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AUK59886.1|868029_869523_+	RND transporter	NA	NA	NA	NA	NA
AUK59887.1|869537_870209_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUK62549.1|870252_870705_-	azurin	NA	NA	NA	NA	NA
AUK59888.1|870887_871535_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK62550.1|871638_873687_+	hydantoinase	NA	NA	NA	NA	NA
AUK59889.1|873683_875696_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AUK59890.1|875721_877056_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62551.1|877164_878157_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59891.1|878223_880308_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AUK59892.1|880332_881304_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59893.1|881432_882434_-	peptidase M14	NA	NA	NA	NA	NA
AUK59894.1|882467_883619_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AUK59895.1|883822_884713_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK59896.1|884790_885615_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK62552.1|885811_886828_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK59897.1|887024_888008_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK59898.1|888066_889194_-	argininosuccinate lyase	NA	NA	NA	NA	NA
AUK59899.1|889184_889559_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59900.1|889606_890995_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59901.1|891025_892015_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59902.1|892125_893358_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AUK59903.1|893639_894440_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK59904.1|894462_896694_-|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AUK59905.1|897481_897928_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AUK59906.1|897949_898696_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AUK59907.1|898839_899817_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AUK59908.1|900450_901062_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AUK59909.1|901055_902273_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
AUK59910.1|902413_903364_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59911.1|903360_904080_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59912.1|904200_906360_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
AUK59913.1|906450_906720_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
AUK62553.1|907013_907541_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59914.1|907559_908339_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AUK59915.1|908506_909523_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AUK59916.1|909595_910087_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
AUK59917.1|910097_911813_-	acetolactate synthase, large subunit, biosynthetic type	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
AUK59918.1|912283_912895_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59919.1|912976_913927_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP017882	Bordetella pertussis strain I384, complete genome	4108491	938426	1000575	4108491	transposase	Bacillus_virus(15.38%)	57	NA	NA
AUK59940.1|938426_939329_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59941.1|939325_939709_-	Rieske (2Fe-2S) protein	NA	NA	NA	NA	NA
AUK59942.1|939763_941578_-	metal ABC transporter permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AUK62555.1|941727_942555_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AUK59943.1|942600_943581_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AUK59944.1|943577_943790_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59945.1|943786_944968_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59946.1|945131_945866_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AUK59947.1|945867_948480_-	penicillin-binding protein	NA	NA	NA	NA	NA
AUK59948.1|948615_950529_-	S9 family peptidase	NA	NA	NA	NA	NA
AUK59949.1|951144_951555_-	phenylacetic acid degradation protein	NA	NA	NA	NA	NA
AUK59950.1|951652_952738_+	DNA polymerase IV	NA	NA	NA	NA	NA
AUK59951.1|952836_953787_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59952.1|953783_954758_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59953.1|954903_955794_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.3e-05
AUK62556.1|956070_956463_-	hypothetical protein	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AUK59954.1|956592_957543_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59955.1|957572_957755_-	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AUK59956.1|958527_959709_-	MFS transporter	NA	NA	NA	NA	NA
AUK59957.1|959924_960602_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AUK59958.1|960598_961324_-	bifunctional 3-demethylubiquinol 3-O-methyltransferase/2-polyprenyl-6-hydroxyphenol methylase	NA	NA	NA	NA	NA
AUK59959.1|961449_962031_-	hypothetical protein	NA	NA	NA	NA	NA
AUK59960.1|962401_965083_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AUK62557.1|965085_966216_+	phosphoserine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
AUK59961.1|966208_967294_+	chorismate mutase	NA	NA	NA	NA	NA
AUK59962.1|967380_968280_+	prephenate dehydrogenase	NA	NA	NA	NA	NA
AUK59963.1|968276_969605_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AUK59964.1|969619_970291_+	cytidylate kinase	NA	NA	NA	NA	NA
AUK59965.1|970478_972194_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AUK59966.1|972195_972555_+	integration host factor subunit beta	NA	NA	NA	NA	NA
AUK59967.1|972746_973061_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59968.1|973103_974324_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AUK59969.1|974320_975262_+	hypothetical protein	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AUK59970.1|975258_976248_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AUK62558.1|976537_976867_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59971.1|976965_977916_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59972.1|977996_978908_+	cysteine synthase B	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
AUK59973.1|978968_980114_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
AUK59974.1|980133_981048_+	deacetylase	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
AUK59975.1|981119_981869_+	electron transporter RnfB	NA	NA	NA	NA	NA
AUK59976.1|981868_982798_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
AUK59977.1|983041_984868_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK59978.1|984950_985592_+	peroxidase	NA	NA	NA	NA	NA
AUK59979.1|985781_986816_+	sulfate transporter subunit	NA	NA	NA	NA	NA
AUK59980.1|986831_987035_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59981.1|987056_987731_+	sulfate ABC transporter permease subunit CysT	NA	NA	NA	NA	NA
AUK59982.1|987845_988628_+	sulfate ABC transporter permease subunit CysW	NA	NA	NA	NA	NA
AUK59983.1|988652_989717_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
AUK62559.1|990514_991423_+	sulfate adenylyltransferase small subunit	NA	NA	NA	NA	NA
AUK59984.1|992910_994185_+	radical SAM protein	NA	NA	NA	NA	NA
AUK59985.1|994338_994719_+	hypothetical protein	NA	NA	NA	NA	NA
AUK59986.1|994726_995599_-	multidrug DMT transporter permease	NA	NA	NA	NA	NA
AUK59987.1|995904_996285_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
AUK59988.1|996534_997221_+	coenzyme A pyrophosphatase	NA	NA	NA	NA	NA
AUK59989.1|997316_998267_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK59990.1|998371_999421_+	aldo/keto reductase	NA	NA	NA	NA	NA
AUK62560.1|999558_1000575_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP017882	Bordetella pertussis strain I384, complete genome	4108491	1024381	1082466	4108491	transposase,tRNA	uncultured_Mediterranean_phage(37.5%)	50	NA	NA
AUK60004.1|1024381_1025284_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60005.1|1025430_1026171_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AUK60006.1|1026365_1028402_+	transketolase	NA	NA	NA	NA	NA
AUK60007.1|1028419_1029430_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AUK60008.1|1029547_1030741_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AUK60009.1|1030770_1031544_-	enoyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA	NA
AUK60010.1|1031540_1032731_-	acetate kinase	NA	NA	NA	NA	NA
AUK60011.1|1032756_1033695_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AUK62562.1|1033691_1036040_-	3-hydroxyalkanoate synthetase	NA	NA	NA	NA	NA
AUK60012.1|1036194_1036836_-	glutathione S-transferase	NA	NA	NA	NA	NA
AUK60013.1|1038349_1038898_-	damage-inducible protein DinB	NA	NA	NA	NA	NA
AUK60014.1|1038916_1039402_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK60015.1|1039579_1040518_+	cytochrome C biogenesis protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AUK60016.1|1040520_1040838_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AUK60017.1|1040883_1041828_+	hypothetical protein	NA	NA	NA	NA	NA
AUK60018.1|1043508_1044159_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AUK60019.1|1044212_1044548_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62563.1|1044562_1045405_+	peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AUK60020.1|1045421_1045703_-	hypothetical protein	NA	NA	NA	NA	NA
AUK60021.1|1045776_1046040_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AUK60022.1|1046283_1047234_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60023.1|1047532_1048270_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AUK60024.1|1048705_1049029_+	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AUK60025.1|1049063_1049624_+	transcriptional regulator FlhC	NA	NA	NA	NA	NA
AUK60026.1|1049744_1050620_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AUK60027.1|1050632_1051580_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
AUK60028.1|1051681_1051975_+	two-component system response regulator	NA	NA	NA	NA	NA
AUK60029.1|1052001_1054059_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
AUK60030.1|1054073_1054574_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
AUK60031.1|1054647_1056354_+	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AUK60032.1|1057217_1058270_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AUK60033.1|1058322_1058712_+	two-component system response regulator	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AUK60034.1|1058720_1059353_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
AUK62564.1|1059452_1060469_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK62565.1|1061299_1062307_+	aldo/keto reductase	NA	NA	NA	NA	NA
AUK60035.1|1062303_1063947_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AUK60036.1|1063943_1064831_-	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
AUK60037.1|1064971_1065445_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
AUK60038.1|1065434_1066457_-	phosphate starvation-inducible protein PhoH	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AUK60039.1|1066453_1067881_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AUK62566.1|1068818_1069835_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK60040.1|1070167_1071103_-	protein-export membrane protein SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AUK60041.1|1071152_1073033_-	protein-export membrane protein SecD	NA	NA	NA	NA	NA
AUK60042.1|1073099_1073444_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AUK60043.1|1073588_1074725_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AUK60044.1|1074721_1075795_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AUK60045.1|1075952_1077389_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AUK62567.1|1077479_1078121_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AUK62568.1|1078456_1079473_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK62569.1|1081515_1082466_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP017882	Bordetella pertussis strain I384, complete genome	4108491	1157582	1219705	4108491	transposase,tRNA	Erysipelothrix_phage(33.33%)	52	NA	NA
AUK60099.1|1157582_1158485_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60100.1|1158631_1159255_-	fimbrial protein	NA	NA	NA	NA	NA
AUK60101.1|1159428_1161711_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AUK60102.1|1161865_1164562_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AUK60103.1|1164687_1165176_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AUK60104.1|1165211_1167074_+	oligopeptide transporter, OPT family	NA	NA	NA	NA	NA
AUK60105.1|1167052_1167262_+	hypothetical protein	NA	NA	NA	NA	NA
AUK60106.1|1167586_1170457_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AUK60107.1|1170502_1171717_+	dihydrolipoamide succinyltransferase	NA	NA	NA	NA	NA
AUK60108.1|1171946_1173374_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AUK60109.1|1173471_1174563_+	cell division protein ZapE	NA	NA	NA	NA	NA
AUK60110.1|1174575_1175334_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK60111.1|1175421_1176324_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK60112.1|1176320_1177271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60113.1|1177400_1178384_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUK60114.1|1178438_1179161_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK60115.1|1180639_1181995_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AUK60116.1|1182075_1184451_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
AUK60117.1|1184615_1186691_+	helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
AUK62575.1|1186752_1187547_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
AUK60118.1|1187654_1188617_+	RNA pseudouridine synthase	NA	NA	NA	NA	NA
AUK60119.1|1188604_1189360_+	hypothetical protein	NA	NA	NA	NA	NA
AUK60120.1|1189467_1191105_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
AUK60121.1|1191172_1191910_+	beta-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK60122.1|1192012_1192588_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
AUK60123.1|1192760_1193297_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62576.1|1193329_1193644_+	periplasmic lipoprotein involved in iron transport	NA	NA	NA	NA	NA
AUK60124.1|1193659_1194505_+	FTR1 family iron permease	NA	NA	NA	NA	NA
AUK60125.1|1194543_1195923_+	hypothetical protein	NA	NA	NA	NA	NA
AUK60126.1|1196000_1196882_+	phenazine biosynthesis protein PhzC/PhzF	NA	NA	NA	NA	NA
AUK60127.1|1197028_1197931_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60128.1|1197927_1198338_-	lactoylglutathione lyase	NA	NA	NA	NA	NA
AUK60129.1|1198445_1199300_-	2-pyrone-4,6-dicarboxylate hydrolase	NA	NA	NA	NA	NA
AUK60130.1|1199292_1200255_-	hypothetical protein	NA	NA	NA	NA	NA
AUK60131.1|1200300_1201425_-	racemase	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
AUK60132.1|1201530_1202409_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK60133.1|1202533_1203313_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK60134.1|1203466_1204888_+	MFS transporter	NA	NA	NA	NA	NA
AUK60135.1|1205322_1207020_+	sodium:proline symporter	NA	NA	NA	NA	NA
AUK60136.1|1207048_1207171_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62577.1|1207246_1208188_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
AUK60137.1|1208514_1209261_+	hypothetical protein	NA	NA	NA	NA	NA
AUK60138.1|1209268_1210195_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK60139.1|1210316_1211234_+	oxidoreductase	NA	NA	NA	NA	NA
AUK60140.1|1211273_1212227_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK60141.1|1212251_1212830_+	hypothetical protein	NA	NA	NA	NA	NA
AUK60142.1|1214503_1215112_+	hypothetical protein	NA	NA	NA	NA	NA
AUK60143.1|1215189_1215543_-	hypothetical protein	NA	NA	NA	NA	NA
AUK62578.1|1215626_1216559_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AUK60144.1|1216866_1217769_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60145.1|1217855_1218806_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60146.1|1218802_1219705_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP017882	Bordetella pertussis strain I384, complete genome	4108491	1270729	1327892	4108491	transposase	Klosneuvirus(16.67%)	52	NA	NA
AUK60182.1|1270729_1271632_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60183.1|1271817_1272087_-	hypothetical protein	NA	NA	NA	NA	NA
AUK60184.1|1272325_1272964_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK60185.1|1273213_1273750_+	hypothetical protein	NA	NA	NA	NA	NA
AUK60186.1|1273768_1275382_+	autotransporter	NA	NA	NA	NA	NA
AUK60187.1|1275378_1275990_-	hypothetical protein	NA	NA	NA	NA	NA
AUK60188.1|1276212_1277673_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
AUK60189.1|1277769_1279362_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
AUK60190.1|1279715_1279973_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK60191.1|1279974_1281315_+	toxin HipA	NA	NA	NA	NA	NA
AUK60192.1|1281410_1282100_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK60193.1|1282112_1283543_+	MFS transporter	NA	NA	NA	NA	NA
AUK60194.1|1285267_1286089_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK60195.1|1286099_1287671_+	hypothetical protein	NA	NA	NA	NA	NA
AUK60196.1|1287699_1288677_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK60197.1|1288703_1289507_+	nitrate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
AUK60198.1|1289503_1290298_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK60199.1|1290305_1291541_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62582.1|1291533_1291968_+	aconitase subunit 2	NA	NA	NA	NA	NA
AUK60200.1|1292717_1293668_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60201.1|1293647_1294229_-	hypothetical protein	NA	NA	NA	NA	NA
AUK60202.1|1294289_1296017_-	sodium-independent anion transporter	NA	NA	NA	NA	NA
AUK60203.1|1296128_1297487_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AUK60204.1|1297779_1298730_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60205.1|1298770_1299841_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62583.1|1299863_1300742_-	hypothetical protein	NA	NA	NA	NA	NA
AUK60206.1|1300913_1301885_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK60207.1|1302047_1302890_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK60208.1|1303051_1303732_+	anti-sigma factor	NA	NA	NA	NA	NA
AUK60209.1|1303725_1304895_+	amine oxidase	NA	NA	NA	NA	NA
AUK60210.1|1304891_1305923_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AUK60211.1|1305990_1307208_+	MFS transporter	NA	NA	NA	NA	NA
AUK60212.1|1307242_1308775_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK60213.1|1308855_1309479_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK60214.1|1309509_1310121_+	RhtB family transporter	NA	NA	NA	NA	NA
AUK60215.1|1310156_1310627_+	histidine kinase	NA	NA	NA	NA	NA
AUK60216.1|1311058_1312063_+	peptidase M20	NA	NA	NA	NA	NA
AUK60217.1|1312099_1313614_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK60218.1|1313617_1314577_+	ABC transporter	NA	NA	NA	NA	NA
AUK60219.1|1314605_1315409_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
AUK60220.1|1315410_1317045_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AUK60221.1|1317128_1318190_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUK60222.1|1318661_1319186_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AUK60223.1|1319649_1320552_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60224.1|1320548_1321583_-	hydrolase	NA	NA	NA	NA	NA
AUK60225.1|1321691_1322330_+	hypothetical protein	NA	NA	NA	NA	NA
AUK60226.1|1322624_1322852_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK60227.1|1322974_1323688_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUK60228.1|1323932_1324883_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60229.1|1325022_1325268_+	hypothetical protein	NA	NA	NA	NA	NA
AUK60230.1|1325382_1326831_-	2-aminoadipate aminotransferase	NA	NA	NA	NA	NA
AUK60231.1|1326941_1327892_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP017882	Bordetella pertussis strain I384, complete genome	4108491	1418125	1470278	4108491	transposase,tRNA	Salmonella_phage(25.0%)	46	NA	NA
AUK60313.1|1418125_1419076_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60314.1|1419242_1419596_+	cytochrome C	NA	NA	NA	NA	NA
AUK60315.1|1419608_1419971_+	cytochrome	NA	NA	NA	NA	NA
AUK60316.1|1420012_1420438_-	hypothetical protein	NA	NA	NA	NA	NA
AUK60317.1|1420640_1421897_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
AUK60318.1|1422095_1423076_+	hypothetical protein	NA	NA	NA	NA	NA
AUK60319.1|1423225_1424467_+	hypothetical protein	NA	NA	NA	NA	NA
AUK60320.1|1424565_1425516_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60321.1|1425524_1426220_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
AUK60322.1|1426261_1428976_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AUK60323.1|1429041_1429641_-	potassium-transporting ATPase subunit C	NA	NA	NA	NA	NA
AUK60324.1|1429651_1431817_-	potassium-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AUK60325.1|1431840_1433625_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
AUK60326.1|1433624_1433714_-	potassium-transporting ATPase subunit F	NA	NA	NA	NA	NA
AUK60327.1|1434408_1434681_+	hypothetical protein	NA	NA	NA	NA	NA
AUK60328.1|1434680_1436747_+	cation acetate symporter	NA	NA	NA	NA	NA
AUK60329.1|1436743_1437646_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60330.1|1437792_1438695_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60331.1|1438858_1439191_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AUK60332.1|1439187_1439874_-	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
AUK60333.1|1439860_1440820_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
AUK60334.1|1440852_1443222_+	cell division protein FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
AUK60335.1|1443221_1443854_+	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AUK60336.1|1443955_1445296_+	recombination factor protein RarA	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
AUK60337.1|1445342_1446698_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
AUK60338.1|1446988_1447225_+	hypothetical protein	NA	NA	NA	NA	NA
AUK60339.1|1447412_1447730_-	virulence factor	NA	NA	NA	NA	NA
AUK60340.1|1448002_1448518_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
AUK60341.1|1448611_1448773_+	hypothetical protein	NA	NA	NA	NA	NA
AUK60342.1|1448788_1449544_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AUK60343.1|1449882_1450089_+	hypothetical protein	NA	NA	NA	NA	NA
AUK60344.1|1450096_1450756_-	antibiotic resistance protein	NA	NA	NA	NA	NA
AUK60345.1|1451050_1453255_-	porin	NA	NA	NA	NA	NA
AUK60346.1|1453365_1454589_-	multidrug transporter	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
AUK60347.1|1454711_1455686_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK60348.1|1455753_1456947_-	Rieske (2Fe-2S) protein	NA	NA	NA	NA	NA
AUK60349.1|1456961_1457762_-	siderophore ferric iron reductase	NA	NA	NA	NA	NA
AUK60350.1|1457758_1459615_-	IucA/IucC family protein	NA	NA	NA	NA	NA
AUK60351.1|1459611_1460217_-	siderophore biosynthesis protein	NA	NA	NA	NA	NA
AUK60352.1|1460235_1461621_-	alcaligin biosynthesis protein	NA	NA	NA	NA	NA
AUK60353.1|1462346_1463573_+	transporter	NA	NA	NA	NA	NA
AUK60354.1|1463661_1464444_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AUK60355.1|1464590_1465493_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60356.1|1465519_1466293_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AUK60357.1|1466304_1467546_+	hypothetical protein	NA	NA	NA	NA	NA
AUK60358.1|1469375_1470278_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP017882	Bordetella pertussis strain I384, complete genome	4108491	1572115	1643221	4108491	transposase	Ectocarpus_siliculosus_virus(11.11%)	55	NA	NA
AUK60451.1|1572115_1573066_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60452.1|1573087_1574308_+	YggW family oxidoreductase	NA	NA	NA	NA	NA
AUK60453.1|1574493_1575906_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AUK60454.1|1575969_1577037_+	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AUK60455.1|1577036_1578524_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AUK62596.1|1578533_1579478_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK60456.1|1579637_1580336_+	quercetin 2,3-dioxygenase	NA	NA	NA	NA	NA
AUK60457.1|1580413_1581319_+	hypothetical protein	NA	NA	NA	NA	NA
AUK60458.1|1581338_1582241_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60459.1|1582387_1583182_-	ABC transporter	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AUK60460.1|1583186_1584857_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AUK60461.1|1584980_1586030_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK60462.1|1586351_1587128_+	ferredoxin--NADP(+) reductase	NA	NA	NA	NA	NA
AUK60463.1|1587192_1588095_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK60464.1|1589388_1590192_+	2,5-didehydrogluconate reductase B	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AUK60465.1|1592885_1593272_+	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AUK60466.1|1593287_1595378_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
AUK60467.1|1595429_1596383_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AUK62597.1|1596397_1597285_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK60468.1|1597422_1598949_+	methylmalonate-semialdehyde dehydrogenase (acylating)	NA	NA	NA	NA	NA
AUK62598.1|1599047_1599548_+	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AUK60469.1|1599871_1601827_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AUK60470.1|1601994_1604079_-	hypothetical protein	NA	NA	NA	NA	NA
AUK62599.1|1604105_1604531_-	hypothetical protein	NA	NA	NA	NA	NA
AUK60471.1|1605746_1606517_+	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AUK60472.1|1606516_1607257_+	sugar ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUK60473.1|1607298_1608468_+	capsule biosynthesis protein	NA	NA	NA	NA	NA
AUK60474.1|1608499_1610584_+	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AUK60475.1|1610580_1611471_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AUK60476.1|1611467_1612565_+	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AUK60477.1|1612587_1613877_+	Vi polysaccharide biosynthesis protein VipA/TviB	NA	NA	NA	NA	NA
AUK60478.1|1613888_1614914_+	LPS biosynthesis protein WbpP	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AUK60479.1|1614910_1616968_+	beta-3-deoxy-D-manno-oct-2-ulosonic acid transferase	NA	NA	NA	NA	NA
AUK60480.1|1616981_1618157_+	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AUK60481.1|1618238_1619189_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60482.1|1619247_1620021_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK60483.1|1620013_1621570_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AUK60484.1|1621566_1622517_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60485.1|1623843_1624446_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK60486.1|1624685_1625387_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUK60487.1|1625380_1626163_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AUK60488.1|1626347_1627298_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60489.1|1627396_1628134_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AUK60490.1|1628323_1629082_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK60491.1|1629128_1630130_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK60492.1|1630295_1631264_-	phenol degradation protein meta	NA	NA	NA	NA	NA
AUK60493.1|1632803_1633772_+	AAA family ATPase	NA	NA	NA	NA	NA
AUK60494.1|1633780_1634722_+	MoxR protein	NA	NA	NA	NA	NA
AUK62600.1|1635195_1636206_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62602.1|1636196_1637711_+	hypothetical protein	NA	NA	NA	NA	NA
AUK60495.1|1637707_1639054_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62601.1|1639056_1640091_+	haloacid dehalogenase	NA	NA	NA	NA	NA
AUK60496.1|1640140_1641766_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AUK60497.1|1641859_1642339_+	hypothetical protein	NA	NA	NA	NA	NA
AUK60498.1|1642318_1643221_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP017882	Bordetella pertussis strain I384, complete genome	4108491	1664060	1725408	4108491	transposase,tRNA	uncultured_Caudovirales_phage(12.5%)	54	NA	NA
AUK60514.1|1664060_1665011_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60515.1|1665119_1665308_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62606.1|1665304_1666027_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AUK60516.1|1666465_1667653_-	hypothetical protein	NA	NA	NA	NA	NA
AUK62607.1|1667656_1668007_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK60517.1|1668240_1669653_-	hypothetical protein	NA	NA	NA	NA	NA
AUK60518.1|1669756_1670728_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK60519.1|1670741_1671455_+	3-oxoacyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA	NA
AUK60520.1|1671459_1672377_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK60521.1|1672483_1672780_+	hypothetical protein	NA	NA	NA	NA	NA
AUK60522.1|1672926_1673829_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60523.1|1674987_1677921_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AUK60524.1|1677920_1678265_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AUK60525.1|1678261_1679890_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AUK60526.1|1679889_1680366_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AUK60527.1|1680365_1680647_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AUK60528.1|1680643_1680970_+	cation:proton antiporter	NA	NA	NA	NA	NA
AUK60529.1|1681125_1682076_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60530.1|1682119_1682662_+	hypothetical protein	NA	NA	NA	NA	NA
AUK60531.1|1682759_1683608_+	hydrolase	NA	NA	NA	NA	NA
AUK62608.1|1683657_1684107_+|tRNA	tRNA-specific adenosine deaminase	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
AUK60532.1|1684103_1685105_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
AUK60533.1|1685117_1685912_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK60534.1|1685960_1687862_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AUK60535.1|1687858_1688482_-	hypothetical protein	NA	NA	NA	NA	NA
AUK60536.1|1688608_1689733_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AUK60537.1|1690113_1691718_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
AUK60538.1|1691873_1692650_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AUK60539.1|1692734_1693733_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK60540.1|1693729_1694503_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK60541.1|1695487_1696438_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60542.1|1696461_1696926_-|tRNA	glutamyl-tRNA amidotransferase	tRNA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AUK60543.1|1697072_1698281_+	nitric oxide dioxygenase	NA	NA	NA	NA	NA
AUK60544.1|1698324_1698762_+	BadM/Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
AUK60545.1|1698880_1700170_+	D-amino acid dehydrogenase small subunit	NA	NA	NA	NA	NA
AUK60546.1|1702910_1703813_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60547.1|1703959_1704976_-	folate-binding protein YgfZ	NA	NA	NA	NA	NA
AUK60548.1|1705154_1706189_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
AUK60549.1|1706185_1706812_+	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AUK60550.1|1706808_1707861_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AUK60551.1|1707910_1708681_+	DNAase	NA	NA	NA	NA	NA
AUK60552.1|1708731_1709568_+	hypothetical protein	NA	NA	NA	NA	NA
AUK60553.1|1709763_1710504_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK60554.1|1710578_1711322_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK60555.1|1711983_1712757_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AUK60556.1|1713894_1715184_+	glutamate dehydrogenase	NA	NA	NA	NA	NA
AUK60557.1|1716794_1718042_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AUK60558.1|1718051_1719761_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AUK60559.1|1719757_1720696_-	CoA ester lyase	NA	NA	NA	NA	NA
AUK60560.1|1720692_1721976_-	C4-dicarboxylate ABC transporter permease	NA	NA	NA	NA	NA
AUK60561.1|1721979_1722462_-	TRAP transporter small permease protein	NA	NA	NA	NA	NA
AUK60562.1|1722462_1723449_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK60563.1|1723621_1724341_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK60564.1|1724457_1725408_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP017882	Bordetella pertussis strain I384, complete genome	4108491	1831596	1903106	4108491	transposase,tRNA	Klosneuvirus(22.22%)	60	NA	NA
AUK60643.1|1831596_1832547_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60644.1|1832671_1833481_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK60645.1|1833729_1834632_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60646.1|1835905_1837123_+	hypothetical protein	NA	NA	NA	NA	NA
AUK60647.1|1837119_1838175_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
AUK60648.1|1838179_1839082_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK60649.1|1839158_1840031_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AUK60650.1|1840161_1840530_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
AUK60651.1|1840587_1841634_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AUK60652.1|1841829_1843086_+	amino acid dehydrogenase	NA	NA	NA	NA	NA
AUK60653.1|1843090_1844428_+	glycerol-3-phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK60654.1|1844577_1845534_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK60655.1|1846991_1847357_+	hypothetical protein	NA	NA	NA	NA	NA
AUK60656.1|1847404_1848979_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK60657.1|1849031_1849976_+	peptide ABC transporter	NA	NA	NA	NA	NA
AUK62616.1|1849903_1850824_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
AUK60658.1|1850816_1852451_+	microcin ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
AUK60659.1|1852447_1853803_+	amidase	NA	NA	NA	NA	NA
AUK60660.1|1854709_1856287_+	hypothetical protein	NA	NA	NA	NA	NA
AUK60661.1|1856290_1857565_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62617.1|1857662_1858037_+	hypothetical protein	NA	NA	NA	NA	NA
AUK60662.1|1859752_1860886_+	general secretion pathway protein	NA	NA	NA	NA	NA
AUK60663.1|1860923_1861529_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
AUK60664.1|1861525_1862344_+	hypothetical protein	NA	NA	NA	NA	NA
AUK60665.1|1862415_1865040_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AUK60666.1|1865026_1865281_+	hypothetical protein	NA	NA	NA	NA	NA
AUK60667.1|1865347_1865929_-	hypothetical protein	NA	NA	NA	NA	NA
AUK60668.1|1866232_1866493_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AUK60669.1|1866658_1867282_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AUK60670.1|1867281_1868055_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AUK60671.1|1868051_1869260_-	class V aminotransferase	NA	NA	NA	NA	NA
AUK60672.1|1869285_1869759_-	hypothetical protein	NA	NA	NA	NA	NA
AUK60673.1|1869832_1870783_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60674.1|1870881_1871784_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60675.1|1871930_1873280_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AUK60676.1|1874045_1874801_+	hypothetical protein	NA	NA	NA	NA	NA
AUK60677.1|1874893_1877776_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AUK60678.1|1878098_1878524_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AUK60679.1|1878551_1879700_+	23S rRNA (adenine(2503)-C(2))-methyltransferase	NA	NA	NA	NA	NA
AUK60680.1|1879696_1880203_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK60681.1|1880218_1881505_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	NA	NA	NA	NA	NA
AUK62618.1|1881554_1882850_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AUK60682.1|1882851_1883490_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62619.1|1883495_1884653_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AUK60683.1|1884679_1886035_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AUK60684.1|1886038_1887109_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AUK60685.1|1887247_1887484_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
AUK60686.1|1887571_1888678_+	GTPase HflX	NA	NA	NA	NA	NA
AUK60687.1|1888643_1889948_+	HflK protein	NA	NA	NA	NA	NA
AUK60688.1|1889966_1890866_+	HflC protein	NA	NA	NA	NA	NA
AUK60689.1|1891049_1892207_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AUK60690.1|1892283_1893579_+	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AUK60691.1|1893692_1894232_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
AUK60692.1|1894509_1894722_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
AUK60693.1|1894741_1896772_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AUK60694.1|1897457_1899740_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
AUK60695.1|1900149_1900449_-	hypothetical protein	NA	NA	NA	NA	NA
AUK60696.1|1900733_1901147_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AUK60697.1|1901106_1902057_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60698.1|1902155_1903106_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP017882	Bordetella pertussis strain I384, complete genome	4108491	1914358	1963712	4108491	transposase	Klosneuvirus(16.67%)	47	NA	NA
AUK60709.1|1914358_1915261_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60710.1|1915257_1916532_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AUK60711.1|1916635_1917829_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AUK60712.1|1917825_1918479_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK60713.1|1918475_1919912_+	dethiobiotin synthase	NA	NA	NA	NA	NA
AUK60714.1|1919899_1920259_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
AUK60715.1|1920344_1920995_+	hypothetical protein	NA	NA	NA	NA	NA
AUK60716.1|1921279_1922182_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60717.1|1922280_1923144_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60718.1|1923227_1925093_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AUK62623.1|1925350_1926871_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AUK60719.1|1926958_1927609_-	NAD(P)H dehydrogenase	NA	NA	NA	NA	NA
AUK60720.1|1928557_1929853_+	hypothetical protein	NA	NA	NA	NA	NA
AUK60721.1|1929874_1930759_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK60722.1|1930857_1931733_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AUK60723.1|1931722_1932079_-	RNA signal recognition particle	NA	NA	NA	NA	NA
AUK60724.1|1932209_1933184_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK60725.1|1933313_1933493_-	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AUK60726.1|1933635_1934115_+	hypothetical protein	NA	NA	NA	NA	NA
AUK60727.1|1934125_1934962_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK60728.1|1935074_1935446_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK60729.1|1935442_1935994_+	ATPase	NA	NA	NA	NA	NA
AUK60730.1|1936009_1937701_-	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AUK60731.1|1937749_1938430_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK60732.1|1938677_1939142_-	hypothetical protein	NA	NA	NA	NA	NA
AUK60733.1|1939311_1940241_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62624.1|1940253_1940847_-	hypothetical protein	NA	NA	NA	NA	NA
AUK60734.1|1940974_1942792_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AUK60735.1|1942875_1943826_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62625.1|1943924_1944404_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK60736.1|1944526_1945429_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60737.1|1945447_1945795_-	aldehyde-activating protein	NA	NA	NA	NA	NA
AUK60738.1|1945823_1947263_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AUK60739.1|1947281_1947677_-	hypothetical protein	NA	NA	NA	NA	NA
AUK60740.1|1947851_1948460_+	peptidase S16	NA	NA	NA	NA	NA
AUK60741.1|1948472_1949291_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AUK60742.1|1949242_1950217_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK60743.1|1950245_1951307_-	hypothetical protein	NA	NA	NA	NA	NA
AUK60744.1|1951303_1953520_-	aldehyde oxidase	NA	NA	NA	NA	NA
AUK60745.1|1953533_1953992_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AUK60746.1|1954149_1954494_-	hypothetical protein	NA	NA	NA	NA	NA
AUK60747.1|1954650_1955556_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK62626.1|1955642_1956656_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AUK62627.1|1958635_1959652_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK60748.1|1959794_1961147_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AUK60749.1|1961321_1961618_+	hypothetical protein	NA	NA	NA	NA	NA
AUK60750.1|1962809_1963712_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP017882	Bordetella pertussis strain I384, complete genome	4108491	1975208	2039529	4108491	transposase	Vibrio_phage(20.0%)	54	NA	NA
AUK60763.1|1975208_1976159_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60764.1|1976380_1977331_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60765.1|1977429_1978395_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK60766.1|1978532_1979432_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK60767.1|1979959_1981786_+	DUF3604 domain-containing protein	NA	NA	NA	NA	NA
AUK60768.1|1982143_1983514_+	hypothetical protein	NA	NA	NA	NA	NA
AUK60769.1|1983524_1984721_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AUK60770.1|1984793_1986113_+	acyl--CoA ligase	NA	NA	NA	NA	NA
AUK60771.1|1986109_1986985_+	esterase	NA	NA	NA	NA	NA
AUK60772.1|1987015_1988164_-	carnitine dehydratase	NA	NA	NA	NA	NA
AUK60773.1|1988181_1988496_-	2Fe-2S ferredoxin	NA	NA	NA	NA	NA
AUK60774.1|1988517_1989240_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK60775.1|1989239_1990058_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK60776.1|1990062_1990590_-	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AUK60777.1|1990595_1991852_-	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AUK60778.1|1992210_1993350_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK60779.1|1993427_1994300_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK60780.1|1995218_1996121_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60781.1|1996080_1996716_-	hypothetical protein	NA	NA	NA	NA	NA
AUK60782.1|1997075_1998398_-	isocitrate lyase	NA	NA	NA	NA	NA
AUK60783.1|1998716_1999538_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
AUK60784.1|1999473_1999815_-	hypothetical protein	NA	NA	NA	NA	NA
AUK60785.1|1999824_2000793_-	MFS transporter	NA	NA	NA	NA	NA
AUK60786.1|2000962_2001535_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AUK60787.1|2001574_2003404_-	excinuclease ABC subunit C	NA	NA	NA	NA	NA
AUK60788.1|2003366_2004425_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
AUK60789.1|2004462_2004924_-	holo-ACP synthase	NA	NA	NA	NA	NA
AUK60790.1|2005008_2005755_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AUK60791.1|2007245_2010476_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AUK60792.1|2010542_2011874_-	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AUK60793.1|2012126_2012501_-	DNA-binding protein	NA	NA	NA	NA	NA
AUK60794.1|2012603_2013782_-	hypothetical protein	NA	NA	NA	NA	NA
AUK60795.1|2013792_2014383_-	hypothetical protein	NA	NA	NA	NA	NA
AUK62629.1|2014493_2015300_+	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AUK60796.1|2015325_2016120_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AUK60797.1|2017120_2018095_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK60798.1|2018253_2018766_-	superoxide dismutase	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AUK60799.1|2018922_2019894_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK60800.1|2021638_2022445_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK60801.1|2022441_2023743_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AUK60802.1|2023693_2024458_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK60803.1|2024571_2025342_-	spermidine synthase	NA	NA	NA	NA	NA
AUK60804.1|2025426_2026614_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AUK60805.1|2026686_2027061_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AUK60806.1|2027161_2028424_-	glycine/betaine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AUK60807.1|2028420_2029278_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK60808.1|2029450_2030452_-	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK60809.1|2030903_2031806_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62630.1|2033417_2034569_+	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA	NA
AUK60810.1|2034937_2035174_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
AUK60811.1|2035237_2035405_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
AUK60812.1|2035518_2037324_-	sulfate transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
AUK60813.1|2037577_2038480_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60814.1|2038626_2039529_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP017882	Bordetella pertussis strain I384, complete genome	4108491	2171109	2220762	4108491	transposase,tRNA	uncultured_Mediterranean_phage(16.67%)	43	NA	NA
AUK60914.1|2171109_2172060_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62638.1|2172158_2173556_-	rRNA methyltransferase	NA	NA	NA	NA	NA
AUK60915.1|2174212_2175178_+	riboflavin biosynthesis protein RibF	NA	NA	NA	NA	NA
AUK60916.1|2175167_2178029_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AUK60917.1|2178031_2178538_+	signal peptidase II	NA	NA	NA	NA	NA
AUK60918.1|2178642_2179851_+	phosphopantothenate synthase	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AUK60919.1|2179852_2180791_-	hypothetical protein	NA	NA	NA	NA	NA
AUK60920.1|2180952_2181426_+	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AUK60921.1|2181422_2182373_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60922.1|2182483_2182924_-	hypothetical protein	NA	NA	NA	NA	NA
AUK60923.1|2183052_2184282_-	lytic transglycosylase	NA	NA	NA	NA	NA
AUK60924.1|2184320_2185142_-	hypothetical protein	NA	NA	NA	NA	NA
AUK60925.1|2185195_2186347_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK60926.1|2186438_2186909_-	hypothetical protein	NA	NA	NA	NA	NA
AUK60927.1|2189477_2192027_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AUK60928.1|2192097_2194671_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AUK60929.1|2194936_2195137_+	general stress protein CsbD	NA	NA	NA	NA	NA
AUK60930.1|2195168_2195330_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AUK60931.1|2195387_2195726_+	phospholipid-binding protein	NA	NA	NA	NA	NA
AUK60932.1|2195874_2196777_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60933.1|2197599_2198268_+	arylesterase	NA	NA	NA	NA	NA
AUK62639.1|2198249_2200205_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AUK60934.1|2200447_2201197_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AUK60935.1|2201209_2202073_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AUK60936.1|2202076_2203492_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AUK60937.1|2203625_2204354_-	glutathione peroxidase	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AUK60938.1|2204492_2204693_-	heavy metal transporter	NA	NA	NA	NA	NA
AUK60939.1|2204868_2205267_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AUK60940.1|2205290_2206691_-	23S rRNA (uracil(1939)-C(5))-methyltransferase	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AUK60941.1|2206809_2207562_-	hypothetical protein	NA	NA	NA	NA	NA
AUK60942.1|2207850_2208450_-	hypothetical protein	NA	NA	NA	NA	NA
AUK60943.1|2208554_2209334_-	3'-5' exonuclease	NA	NA	NA	NA	NA
AUK60944.1|2209330_2210215_-	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AUK60945.1|2210232_2211012_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
AUK60946.1|2210996_2211755_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AUK62640.1|2211892_2212528_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AUK62641.1|2212795_2213812_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK60947.1|2213909_2214950_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AUK60948.1|2215084_2216377_+	guanine permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AUK60949.1|2217736_2218120_+	thiol reductase thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AUK60950.1|2218137_2218725_-	thymidylate synthase	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AUK60951.1|2218762_2219665_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60952.1|2219811_2220762_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP017882	Bordetella pertussis strain I384, complete genome	4108491	2269645	2333175	4108491	transposase,protease	uncultured_Caudovirales_phage(11.11%)	50	NA	NA
AUK60997.1|2269645_2270548_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60998.1|2270694_2271597_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK60999.1|2271898_2272375_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
AUK61000.1|2272998_2274636_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
AUK61001.1|2274666_2275980_-	pyrimidine utilization transport protein G	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
AUK62648.1|2276140_2276431_+	hypothetical protein	NA	NA	NA	NA	NA
AUK61002.1|2276531_2277854_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK61003.1|2277850_2278753_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61004.1|2278882_2279266_-	hypothetical protein	NA	NA	NA	NA	NA
AUK61005.1|2279330_2280353_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK61006.1|2280381_2281212_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
AUK62649.1|2281228_2282926_-	phosphonate ABC transporter permease	NA	NA	NA	NA	NA
AUK61007.1|2282990_2284067_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
AUK61008.1|2284226_2285090_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK61009.1|2285120_2285690_+	phosphohydrolase	NA	NA	NA	NA	NA
AUK61010.1|2285706_2286558_-	sulfurtransferase	NA	NA	NA	NA	NA
AUK61011.1|2287615_2288497_+|protease	zinc metalloprotease HtpX	protease	NA	NA	NA	NA
AUK61012.1|2288571_2289561_-	quinone oxidoreductase	NA	NA	NA	NA	NA
AUK61013.1|2289623_2290574_-	EamA family transporter	NA	NA	NA	NA	NA
AUK61014.1|2290636_2291494_+	EamA family transporter	NA	NA	NA	NA	NA
AUK61015.1|2291553_2292042_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUK61016.1|2293614_2294805_+	HlyD family secretion protein	NA	NA	NA	NA	NA
AUK61017.1|2294801_2296388_+	MFS transporter	NA	NA	NA	NA	NA
AUK61018.1|2296406_2297474_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
AUK62650.1|2297578_2299108_-	DNA-binding protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.0e-14
AUK61019.1|2299542_2301117_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK61020.1|2301224_2302241_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK61021.1|2302237_2303077_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK61022.1|2303087_2304719_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.7e-21
AUK61023.1|2304715_2305618_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61024.1|2305808_2307083_+	4-aminobutyrate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
AUK61025.1|2307112_2307403_+	cupin	NA	NA	NA	NA	NA
AUK62651.1|2307475_2308489_+	acetylpolyamine amidohydrolase	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
AUK61026.1|2308508_2309771_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AUK61027.1|2309773_2310697_+	EamA family transporter	NA	NA	NA	NA	NA
AUK61028.1|2310693_2312187_+	aldehyde dehydrogenase PuuC	NA	NA	NA	NA	NA
AUK61029.1|2312197_2313130_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AUK61030.1|2313347_2314637_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
AUK62652.1|2314671_2316015_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
AUK61031.1|2316087_2317608_-	ATP-binding protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
AUK61032.1|2317762_2318494_+	hypothetical protein	NA	NA	NA	NA	NA
AUK61033.1|2318591_2319902_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AUK61034.1|2319917_2320829_+	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
AUK62653.1|2320825_2321413_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
AUK61035.1|2321474_2321861_+	ribosome silencing factor	NA	NA	NA	NA	NA
AUK61036.1|2321872_2322343_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
AUK61037.1|2322354_2322978_+	septum formation protein Maf	NA	NA	NA	NA	NA
AUK61038.1|2322998_2325746_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK61039.1|2332022_2332238_+	hypothetical protein	NA	NA	NA	NA	NA
AUK61040.1|2332224_2333175_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP017882	Bordetella pertussis strain I384, complete genome	4108491	2478116	2536360	4108491	transposase,tRNA	Planktothrix_phage(28.57%)	53	NA	NA
AUK61159.1|2478116_2479019_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61160.1|2479546_2480203_-	N-(5'-phosphoribosyl)anthranilate isomerase	NA	NA	NA	NA	NA
AUK61161.1|2480217_2481885_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AUK61162.1|2481887_2482517_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK61163.1|2482728_2483823_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK61164.1|2483967_2484780_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AUK61165.1|2484783_2486367_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
AUK61166.1|2486537_2487668_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AUK61167.1|2487854_2488931_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AUK62664.1|2489012_2489663_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AUK61168.1|2489677_2491081_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
AUK61169.1|2491364_2492183_-	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK61170.1|2492179_2492884_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
AUK61171.1|2493783_2494899_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK61172.1|2494932_2495307_-	hypothetical protein	NA	NA	NA	NA	NA
AUK61173.1|2495329_2496487_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
AUK61174.1|2496499_2496733_-	hypothetical protein	NA	NA	NA	NA	NA
AUK61175.1|2497367_2500337_-	formate dehydrogenase	NA	NA	NA	NA	NA
AUK61176.1|2500351_2500561_-	formate dehydrogenase	NA	NA	NA	NA	NA
AUK61177.1|2500712_2501342_-	hypothetical protein	NA	NA	NA	NA	NA
AUK62665.1|2501338_2503396_-	4Fe-4S ferredoxin	NA	NA	NA	NA	NA
AUK61178.1|2503452_2504133_-	hypothetical protein	NA	NA	NA	NA	NA
AUK61179.1|2504129_2504690_-	hypothetical protein	NA	NA	NA	NA	NA
AUK61180.1|2504696_2505794_-	MRP family ATP-binding protein	NA	NA	NA	NA	NA
AUK61181.1|2505946_2506540_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
AUK61182.1|2506536_2507829_+	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AUK61183.1|2507842_2508385_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
AUK61184.1|2508394_2509231_-	peptidase M48	NA	NA	NA	NA	NA
AUK61185.1|2509264_2510326_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
AUK61186.1|2510367_2511420_-	diguanylate cyclase	NA	NA	NA	NA	NA
AUK61187.1|2511435_2511738_-	hypothetical protein	NA	NA	NA	NA	NA
AUK61188.1|2511879_2512830_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61189.1|2513008_2514703_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK61190.1|2514699_2515785_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AUK61191.1|2515832_2516732_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK61192.1|2516742_2517387_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AUK61193.1|2518408_2521651_-	carbamoyl phosphate synthase large subunit	NA	NA	NA	NA	NA
AUK61194.1|2521661_2522816_-	carbamoyl phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
AUK61195.1|2523042_2524005_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
AUK61196.1|2524151_2525054_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61197.1|2525200_2526103_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61198.1|2526112_2526802_-	hypothetical protein	NA	NA	NA	NA	NA
AUK61199.1|2526861_2527299_-	thioesterase	NA	NA	NA	NA	NA
AUK61200.1|2527344_2528238_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AUK61201.1|2528285_2529458_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK61202.1|2529454_2530609_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK61203.1|2530805_2531156_-	RnfH family protein	NA	NA	NA	NA	NA
AUK61204.1|2531145_2531580_-	ubiquinone-binding protein	NA	NA	NA	NA	NA
AUK61205.1|2531596_2532499_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61206.1|2532694_2533162_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AUK61207.1|2533142_2534300_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AUK61208.1|2534365_2535292_-	paraslipin	NA	NA	NA	NA	NA
AUK61209.1|2535457_2536360_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP017882	Bordetella pertussis strain I384, complete genome	4108491	2578686	2645138	4108491	transposase	uncultured_Caudovirales_phage(40.0%)	58	NA	NA
AUK61247.1|2578686_2579589_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61248.1|2579604_2579817_+	hypothetical protein	NA	NA	NA	NA	NA
AUK61249.1|2579958_2580531_+	flagellar basal body protein FliL	NA	NA	NA	NA	NA
AUK61250.1|2580533_2581544_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AUK61251.1|2581536_2582037_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AUK61252.1|2582047_2582389_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AUK62669.1|2582457_2583192_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AUK61253.1|2583208_2583478_+	EscS/YscS/HrcS family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AUK61254.1|2583500_2584289_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AUK62670.1|2584335_2585352_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK61255.1|2585568_2587011_-	chemotaxis protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AUK61256.1|2587189_2588809_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AUK61257.1|2588929_2590750_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	67.4	5.6e-07
AUK61258.1|2590828_2592361_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AUK61259.1|2592394_2594041_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AUK61260.1|2594110_2595133_-	flagellar rod assembly protein/muramidase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AUK61261.1|2595150_2596284_-	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AUK61262.1|2596286_2596976_-	flagellar basal body L-ring protein	NA	NA	NA	NA	NA
AUK61263.1|2596975_2597761_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AUK61264.1|2597804_2598569_-	flagellar biosynthesis protein FlgF	NA	NA	NA	NA	NA
AUK61265.1|2598607_2600029_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AUK61266.1|2600094_2600799_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AUK61267.1|2600846_2601266_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AUK61268.1|2601278_2601686_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AUK62671.1|2601869_2602580_+	flagella basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AUK61269.1|2602706_2602997_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AUK61270.1|2603014_2603497_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AUK61271.1|2608002_2609157_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
AUK62672.1|2609462_2610479_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK61272.1|2610725_2611514_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK61273.1|2611580_2612261_+	cysteine ABC transporter permease	NA	NA	NA	NA	NA
AUK61274.1|2612257_2613028_+	ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AUK61275.1|2613126_2614077_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61276.1|2614132_2615050_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AUK61277.1|2615060_2616239_-	mandelate racemase	NA	NA	NA	NA	NA
AUK61278.1|2616258_2617254_-	hypothetical protein	NA	NA	NA	NA	NA
AUK61279.1|2618842_2619451_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AUK61280.1|2619438_2620479_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUK61281.1|2620496_2621459_-	hypothetical protein	NA	NA	NA	NA	NA
AUK61282.1|2621455_2622649_-	CoA transferase	NA	NA	NA	NA	NA
AUK61283.1|2622645_2623443_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AUK61284.1|2623468_2624455_-	hypothetical protein	NA	NA	NA	NA	NA
AUK61285.1|2624473_2626513_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AUK62673.1|2626714_2627395_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK61286.1|2627408_2628320_-	CoA ester lyase	NA	NA	NA	NA	NA
AUK61287.1|2628316_2628895_-	NADPH-dependent FMN reductase	NA	NA	NA	NA	NA
AUK61288.1|2629033_2629939_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK61289.1|2629946_2633366_+	nuclease	NA	NA	NA	NA	NA
AUK61290.1|2633353_2635954_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK61291.1|2636909_2637542_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AUK61292.1|2637935_2638694_+	hypothetical protein	NA	NA	NA	NA	NA
AUK61293.1|2638690_2639893_+	cardiolipin synthase B	NA	NA	NA	NA	NA
AUK61294.1|2639889_2640090_+	hypothetical protein	NA	NA	NA	NA	NA
AUK61295.1|2640080_2641031_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61296.1|2641938_2643084_+	hypothetical protein	NA	NA	NA	NA	NA
AUK61297.1|2643070_2643826_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK61298.1|2643942_2644122_+	hypothetical protein	NA	NA	NA	NA	NA
AUK61299.1|2644187_2645138_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP017882	Bordetella pertussis strain I384, complete genome	4108491	2673301	2710665	4108491	transposase	Planktothrix_phage(33.33%)	40	NA	NA
AUK61318.1|2673301_2674204_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61319.1|2674350_2675253_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61320.1|2675345_2675885_+	peroxiredoxin	NA	NA	NA	NA	NA
AUK61321.1|2675991_2676336_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
AUK61322.1|2676393_2677842_-	carnitine dehydratase	NA	NA	NA	NA	NA
AUK62676.1|2678029_2678356_-	hypothetical protein	NA	NA	NA	NA	NA
AUK61323.1|2679992_2681171_+	hypothetical protein	NA	NA	NA	NA	NA
AUK61324.1|2681253_2681754_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
AUK61325.1|2681863_2682565_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
AUK61326.1|2682576_2683041_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUK62677.1|2683055_2683331_+	biotin--protein ligase	NA	NA	NA	NA	NA
AUK61327.1|2683327_2684104_+	lipoate--protein ligase	NA	NA	NA	NA	NA
AUK61328.1|2684132_2684960_+	hypothetical protein	NA	NA	NA	NA	NA
AUK61329.1|2685085_2685556_+	hypothetical protein	NA	NA	NA	NA	NA
AUK61330.1|2685682_2686576_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
AUK61331.1|2686623_2687805_+	alpha-hydroxy-acid oxidizing enzyme	NA	NA	NA	NA	NA
AUK61332.1|2687817_2688633_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK61333.1|2688766_2689294_-	hypothetical protein	NA	NA	NA	NA	NA
AUK62678.1|2689290_2689788_-	hypothetical protein	NA	NA	NA	NA	NA
AUK61334.1|2689935_2690313_+	hypothetical protein	NA	NA	NA	NA	NA
AUK61335.1|2690270_2690555_+	hypothetical protein	NA	NA	NA	NA	NA
AUK61336.1|2690534_2691437_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62679.1|2691583_2692195_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK61337.1|2692429_2693557_+	leucine ABC transporter subunit substrate-binding protein LivK	NA	NA	NA	NA	NA
AUK61338.1|2693667_2694756_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
AUK61339.1|2694808_2695660_-	glycerol-3-phosphate transporter	NA	NA	NA	NA	NA
AUK61340.1|2695679_2696561_-	glycerol-3-phosphate transporter permease	NA	NA	NA	NA	NA
AUK62680.1|2696737_2698051_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK61341.1|2698261_2699095_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
AUK61342.1|2699091_2699673_+	hypothetical protein	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
AUK61343.1|2700026_2700977_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61344.1|2700992_2702108_+	leucine ABC transporter subunit substrate-binding protein LivK	NA	NA	NA	NA	NA
AUK61345.1|2702210_2703137_+	branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
AUK61346.1|2703136_2704375_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
AUK61347.1|2704371_2705139_+	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
AUK61348.1|2705139_2705841_+	branched-chain amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
AUK62681.1|2705922_2706369_-	glutamate racemase	NA	NA	NA	NA	NA
AUK61349.1|2707258_2707897_+	glutathione S-transferase	NA	NA	NA	NA	NA
AUK61350.1|2708665_2709616_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61351.1|2709714_2710665_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP017882	Bordetella pertussis strain I384, complete genome	4108491	2809792	2930169	4108491	transposase,protease	Agrobacterium_phage(16.67%)	98	NA	NA
AUK61433.1|2809792_2810695_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61434.1|2810841_2811744_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61435.1|2812120_2812726_+	fimbrial protein	NA	NA	NA	NA	NA
AUK61436.1|2812779_2814093_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AUK61437.1|2814167_2814638_-	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AUK61438.1|2814637_2815426_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AUK61439.1|2815436_2817089_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AUK61440.1|2817176_2818079_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62689.1|2819288_2819795_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AUK61441.1|2819791_2820556_-	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AUK61442.1|2820571_2820856_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AUK61443.1|2820920_2821910_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AUK61444.1|2822081_2823011_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AUK61445.1|2822982_2823669_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AUK61446.1|2823702_2824248_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AUK61447.1|2824292_2825558_+	peptidase M48	NA	NA	NA	NA	NA
AUK61448.1|2825554_2826457_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
AUK61449.1|2827638_2828583_-	peptide ABC transporter	NA	NA	NA	NA	NA
AUK61450.1|2828677_2830195_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK61451.1|2830236_2831865_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AUK61452.1|2831972_2832854_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK61453.1|2833114_2833342_+	hypothetical protein	NA	NA	NA	NA	NA
AUK61454.1|2835966_2836341_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AUK61455.1|2836365_2836704_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK61456.1|2836747_2838382_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AUK61457.1|2838420_2839767_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AUK62690.1|2839874_2841296_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AUK61458.1|2841365_2841950_-	nitroreductase	NA	NA	NA	NA	NA
AUK61459.1|2842052_2843003_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61460.1|2843137_2844244_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK61461.1|2844254_2845352_+	cyclic pyranopterin phosphate synthase	NA	NA	NA	NA	NA
AUK61462.1|2845496_2846702_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AUK61463.1|2846708_2847230_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AUK62691.1|2847226_2847709_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AUK61464.1|2847714_2847966_-	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA	NA
AUK61465.1|2847946_2848432_-	molybdenum cofactor biosynthesis protein C	NA	NA	NA	NA	NA
AUK61466.1|2848567_2852029_+	hypothetical protein	NA	NA	NA	NA	NA
AUK61467.1|2852046_2852931_+	carboxymethylenebutenolidase	NA	NA	NA	NA	NA
AUK61468.1|2852940_2853372_-	hypothetical protein	NA	NA	NA	NA	NA
AUK62692.1|2853618_2854122_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AUK61469.1|2854199_2855600_+	MFS transporter	NA	NA	NA	NA	NA
AUK61470.1|2855674_2856550_-	hypothetical protein	NA	NA	NA	NA	NA
AUK62693.1|2856546_2857554_-	biotin synthase BioB	NA	NA	NA	NA	NA
AUK61471.1|2858021_2858327_+	hypothetical protein	NA	NA	NA	NA	NA
AUK61472.1|2858417_2859008_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK62694.1|2859198_2860215_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK61473.1|2860406_2862743_-	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AUK61474.1|2862825_2863260_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AUK61475.1|2863406_2864309_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61476.1|2864407_2865358_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61477.1|2865354_2866149_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AUK61478.1|2866180_2866885_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AUK61479.1|2866959_2867760_-	hypothetical protein	NA	NA	NA	NA	NA
AUK61480.1|2867756_2868164_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AUK61481.1|2868160_2868802_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AUK62695.1|2868794_2870795_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AUK61482.1|2872055_2873387_+	arabinose ABC transporter permease	NA	NA	NA	NA	NA
AUK61483.1|2873383_2874286_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61484.1|2876040_2876307_-	hypothetical protein	NA	NA	NA	NA	NA
AUK61485.1|2877014_2877353_+	transcriptional regulator	NA	NA	NA	NA	NA
AUK61486.1|2878681_2880961_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AUK61487.1|2881906_2882509_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK61488.1|2882605_2883895_+	MFS transporter	NA	NA	NA	NA	NA
AUK61489.1|2883952_2884684_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AUK61490.1|2884680_2885484_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AUK61491.1|2885480_2886569_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUK61492.1|2886565_2887495_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK61493.1|2887643_2888789_-	branched chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK61494.1|2888810_2889713_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61495.1|2890091_2893913_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AUK61496.1|2894069_2894738_-	hypothetical protein	NA	NA	NA	NA	NA
AUK61497.1|2894742_2896416_-	paraquat-inducible protein B	NA	NA	NA	NA	NA
AUK61498.1|2896434_2897754_-	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AUK61499.1|2897758_2900074_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
AUK62696.1|2900129_2902298_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AUK62697.1|2902294_2906860_-	alpha-2-macroglobulin	NA	NA	NA	NA	NA
AUK61500.1|2907573_2907888_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AUK61501.1|2908115_2908361_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AUK61502.1|2908482_2908974_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	4.8e-14
AUK61503.1|2909073_2910279_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AUK61504.1|2910394_2911792_-	chloride channel protein EriC	NA	NA	NA	NA	NA
AUK61505.1|2911908_2912487_-	superoxide dismutase	NA	NA	NA	NA	NA
AUK61506.1|2912559_2913951_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AUK61507.1|2914118_2915069_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61508.1|2915349_2915970_+	flagellar motor protein MotA	NA	NA	NA	NA	NA
AUK61509.1|2915966_2916380_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AUK61510.1|2916376_2917420_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AUK61511.1|2917475_2917664_+	hypothetical protein	NA	NA	NA	NA	NA
AUK61512.1|2917673_2918438_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AUK61513.1|2918528_2919185_+	adenylate kinase	NA	NA	NA	NA	NA
AUK61514.1|2919276_2920035_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK61515.1|2920060_2921662_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AUK61516.1|2921862_2922867_+	iron dicitrate transport regulator FecR	NA	NA	NA	NA	NA
AUK61517.1|2922967_2923231_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AUK61518.1|2923348_2924125_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AUK61519.1|2924715_2925666_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61520.1|2928049_2929162_-	malate dehydrogenase	NA	NA	NA	NA	NA
AUK61521.1|2929218_2930169_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP017882	Bordetella pertussis strain I384, complete genome	4108491	2952548	3004198	4108491	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
AUK61544.1|2952548_2953412_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61545.1|2953607_2955080_-	magnesium transporter	NA	NA	NA	NA	NA
AUK61546.1|2955090_2955501_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AUK61547.1|2955564_2956611_-	hypothetical protein	NA	NA	NA	NA	NA
AUK61548.1|2956717_2957596_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK61549.1|2957609_2958806_-	amidohydrolase	NA	NA	NA	NA	NA
AUK61550.1|2958867_2960559_+	long-chain fatty acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.4e-33
AUK61551.1|2960555_2961458_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61552.1|2961626_2962523_-	inositol monophosphatase	NA	NA	NA	NA	NA
AUK61553.1|2964800_2967026_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AUK61554.1|2967190_2968279_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AUK61555.1|2968235_2968889_+	DL-methionine transporter permease subunit	NA	NA	NA	NA	NA
AUK61556.1|2968936_2969734_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK61557.1|2970313_2971216_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61558.1|2971296_2972445_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AUK61559.1|2972501_2973452_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61560.1|2973550_2973856_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AUK61561.1|2973884_2974319_-	hypothetical protein	NA	NA	NA	NA	NA
AUK61562.1|2974320_2975565_-	hypothetical protein	NA	NA	NA	NA	NA
AUK61563.1|2975561_2976272_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK62699.1|2976286_2977198_-	hypothetical protein	NA	NA	NA	NA	NA
AUK61564.1|2977560_2977965_+	hypothetical protein	NA	NA	NA	NA	NA
AUK61565.1|2977961_2978420_+	hypothetical protein	NA	NA	NA	NA	NA
AUK61566.1|2978426_2979335_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62700.1|2979331_2980198_+	ABC transporter permease	NA	NA	NA	NA	NA
AUK61567.1|2980184_2981012_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AUK61568.1|2981022_2982150_+	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AUK61569.1|2984507_2985770_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK61570.1|2985776_2986529_+	DNA-binding protein	NA	NA	NA	NA	NA
AUK61571.1|2986580_2986766_-	hypothetical protein	NA	NA	NA	NA	NA
AUK61572.1|2987041_2987506_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AUK61573.1|2987585_2988197_+	3-methyladenine DNA glycosylase	NA	NA	NA	NA	NA
AUK61574.1|2988341_2990450_+	hypothetical protein	NA	NA	NA	NA	NA
AUK61575.1|2990446_2991349_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61576.1|2991500_2992121_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK62701.1|2992224_2992965_+	oxidoreductase	NA	NA	NA	NA	NA
AUK61577.1|2994099_2995224_-	hypothetical protein	NA	NA	NA	NA	NA
AUK61578.1|2995269_2995638_-	hypothetical protein	NA	NA	NA	NA	NA
AUK61579.1|2995879_2996782_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61580.1|2997865_2998408_-	hypothetical protein	NA	NA	NA	NA	NA
AUK61581.1|2998841_2999744_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61582.1|2999740_3000649_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK61583.1|3000775_3001612_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AUK61584.1|3002124_3003234_+	porin	NA	NA	NA	NA	NA
AUK61585.1|3003295_3004198_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP017882	Bordetella pertussis strain I384, complete genome	4108491	3237758	3285376	4108491	transposase,tRNA	Erwinia_phage(10.0%)	46	NA	NA
AUK61773.1|3237758_3238709_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61774.1|3239153_3239465_-	cell division protein ZapA	NA	NA	NA	NA	NA
AUK61775.1|3239464_3239995_-	hypothetical protein	NA	NA	NA	NA	NA
AUK61776.1|3240157_3241108_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61777.1|3241397_3241862_+	tricarboxylate transporter	NA	NA	NA	NA	NA
AUK61778.1|3241876_3243382_+	hypothetical protein	NA	NA	NA	NA	NA
AUK61779.1|3243638_3245243_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AUK61780.1|3245298_3246204_+	oxidoreductase	NA	NA	NA	NA	NA
AUK61781.1|3246644_3247547_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61782.1|3247693_3248596_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61783.1|3248725_3249307_-	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
AUK62712.1|3249731_3250037_+	RND transporter	NA	NA	NA	NA	NA
AUK61784.1|3250050_3251385_-	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AUK61785.1|3251406_3251946_-	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AUK61786.1|3252093_3252558_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AUK61787.1|3252700_3253816_-	cobalamin biosynthesis protein CobW	NA	NA	NA	NA	NA
AUK61788.1|3254092_3254596_-	transcriptional repressor	NA	NA	NA	NA	NA
AUK61789.1|3254733_3254934_+	hypothetical protein	NA	NA	NA	NA	NA
AUK61790.1|3254924_3255647_+	ABC transporter	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AUK61791.1|3255643_3256540_+	zinc ABC transporter permease	NA	NA	NA	NA	NA
AUK61792.1|3256536_3257472_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK61793.1|3257432_3258101_+	hypothetical protein	NA	NA	NA	NA	NA
AUK61794.1|3258091_3259060_+	nickel transporter	NA	NA	NA	NA	NA
AUK61795.1|3259108_3261250_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AUK61796.1|3261262_3262243_-	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
AUK61797.1|3262257_3262950_-	hypothetical protein	NA	NA	NA	NA	NA
AUK61798.1|3262976_3263888_-	diaminopimelate epimerase	NA	NA	NA	NA	NA
AUK61799.1|3263930_3264821_-	acyltransferase	NA	NA	NA	NA	NA
AUK61800.1|3264817_3265672_-	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA	NA
AUK61801.1|3265955_3267119_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
AUK61802.1|3267229_3267481_+	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AUK61803.1|3267560_3268601_+	alpha-mannosyltransferase	NA	NA	NA	NA	NA
AUK61804.1|3268880_3270299_+	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AUK61805.1|3270369_3270705_+	hypothetical protein	NA	NA	NA	NA	NA
AUK61806.1|3270704_3271547_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AUK61807.1|3271693_3272596_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61808.1|3272660_3273632_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK61809.1|3273695_3274715_-	acetylpolyamine amidohydrolase	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
AUK61810.1|3274716_3276057_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK62713.1|3276367_3277048_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AUK62714.1|3277123_3279187_+	lytic transglycosylase	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.3e-14
AUK61811.1|3279183_3280278_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
AUK61812.1|3280292_3281483_-	hypothetical protein	NA	NA	NA	NA	NA
AUK61813.1|3281571_3283260_-	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
AUK61814.1|3283534_3284287_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
AUK61815.1|3284425_3285376_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
CP017882	Bordetella pertussis strain I384, complete genome	4108491	3295303	3335253	4108491	transposase,protease,tRNA,integrase	Klosneuvirus(33.33%)	27	3318100:3318118	3337988:3338006
AUK61825.1|3295303_3296254_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61826.1|3296781_3297555_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK61827.1|3297687_3298698_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUK61828.1|3298849_3300505_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AUK61829.1|3300559_3300901_-	cupin	NA	NA	NA	NA	NA
AUK61830.1|3300914_3302354_-	amine oxidase	NA	NA	NA	NA	NA
AUK61831.1|3302486_3303302_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AUK61832.1|3303543_3304446_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61833.1|3305839_3306781_+	hypothetical protein	NA	NA	NA	NA	NA
AUK61834.1|3307007_3307748_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK61835.1|3307833_3308736_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61836.1|3310225_3311797_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK61837.1|3312129_3313983_+	hypothetical protein	NA	NA	NA	NA	NA
AUK61838.1|3314027_3316592_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
3318100:3318118	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AUK61839.1|3318744_3319029_-	hypothetical protein	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
AUK61840.1|3319110_3320022_-	hypothetical protein	NA	NA	NA	NA	NA
AUK61841.1|3320091_3320337_+	hypothetical protein	NA	NA	NA	NA	NA
AUK61842.1|3320565_3320823_-	hypothetical protein	NA	NA	NA	NA	NA
AUK61843.1|3321337_3322240_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61844.1|3322471_3323683_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AUK61845.1|3323698_3326650_-	site-specific DNA-methyltransferase	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AUK62717.1|3326651_3329408_-	restriction endonuclease	NA	NA	NA	NA	NA
AUK61846.1|3329918_3330965_-	cell filamentation protein Fic	NA	NA	NA	NA	NA
AUK61847.1|3331306_3332434_-|integrase	integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AUK61848.1|3332713_3333805_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AUK61849.1|3333877_3334660_-|protease	CAAX protease	protease	NA	NA	NA	NA
AUK61850.1|3334656_3335253_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
3337988:3338006	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
>prophage 29
CP017882	Bordetella pertussis strain I384, complete genome	4108491	3384239	3437884	4108491	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
AUK61888.1|3384239_3385142_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61889.1|3385546_3386191_-	urease accessory protein UreG	NA	NA	NA	NA	NA
AUK61890.1|3386215_3386800_-	urease accessory protein UreF	NA	NA	NA	NA	NA
AUK61891.1|3386900_3387518_-	urease accessory protein UreE	NA	NA	NA	NA	NA
AUK61892.1|3387520_3389236_-	urease subunit alpha	NA	NA	NA	NA	NA
AUK61893.1|3389232_3389541_-	urease subunit beta	NA	NA	NA	NA	NA
AUK62720.1|3389557_3390175_-	urease accessory protein UreJ	NA	NA	NA	NA	NA
AUK61894.1|3390219_3390522_-	urease subunit gamma	NA	NA	NA	NA	NA
AUK61895.1|3390622_3391477_-	urease accessory protein	NA	NA	NA	NA	NA
AUK61896.1|3392748_3393156_-	aldehyde-activating protein	NA	NA	NA	NA	NA
AUK61897.1|3393525_3394320_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK61898.1|3394420_3395656_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AUK61899.1|3395724_3396741_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AUK61900.1|3396752_3398129_+	hypothetical protein	NA	NA	NA	NA	NA
AUK61901.1|3398125_3399322_+	hypothetical protein	NA	NA	NA	NA	NA
AUK61902.1|3399318_3400857_-	SpoVR family protein	NA	NA	NA	NA	NA
AUK61903.1|3400853_3402113_-	hypothetical protein	NA	NA	NA	NA	NA
AUK61904.1|3404053_3404956_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61905.1|3405770_3406865_-	CoA transferase	NA	NA	NA	NA	NA
AUK61906.1|3406857_3408192_-	CoA ligase	NA	NA	NA	NA	NA
AUK61907.1|3408145_3408829_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK61908.1|3408854_3410018_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK61909.1|3410014_3411016_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK61910.1|3411015_3411888_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AUK61911.1|3411884_3412634_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AUK61912.1|3412630_3413422_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AUK61913.1|3413418_3414558_-	ABC transporter	NA	NA	NA	NA	NA
AUK61914.1|3414833_3415619_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK61915.1|3415652_3416435_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK61916.1|3416438_3416828_+	DNA-binding protein	NA	NA	NA	NA	NA
AUK61917.1|3417967_3418831_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK61918.1|3418866_3419955_+	hypothetical protein	NA	NA	NA	NA	NA
AUK61919.1|3419951_3420854_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61920.1|3421255_3424234_+	hypothetical protein	NA	NA	NA	NA	NA
AUK61921.1|3425160_3426039_+	fatty acid desaturase	NA	NA	NA	NA	NA
AUK61922.1|3426074_3426407_+	hypothetical protein	NA	NA	NA	NA	NA
AUK61923.1|3426385_3427906_+	hypothetical protein	NA	NA	NA	NA	NA
AUK61924.1|3427987_3428938_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61925.1|3428934_3429402_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AUK61926.1|3429444_3430215_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUK61927.1|3430235_3431036_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AUK61928.1|3431046_3432456_+	lytic transglycosylase	NA	NA	NA	NA	NA
AUK61929.1|3432550_3433336_+	enoyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA	NA
AUK62721.1|3433575_3434592_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK61930.1|3434699_3435092_-	osmotically inducible protein OsmC	NA	NA	NA	NA	NA
AUK61931.1|3435229_3435910_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62722.1|3435914_3436886_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK61932.1|3436981_3437884_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
CP017882	Bordetella pertussis strain I384, complete genome	4108491	3444087	3503337	4108491	transposase,tRNA	Acinetobacter_phage(27.27%)	50	NA	NA
AUK61936.1|3444087_3445851_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AUK61937.1|3445962_3446841_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AUK61938.1|3446953_3447769_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AUK61939.1|3447772_3448024_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
AUK62723.1|3448108_3449125_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK61940.1|3449455_3449677_-	hypothetical protein	NA	NA	NA	NA	NA
AUK62724.1|3452037_3452904_-	EamA family transporter	NA	NA	NA	NA	NA
AUK61941.1|3453452_3454661_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK61942.1|3454740_3456312_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK61943.1|3456429_3457365_-	glycosyl transferase	NA	NA	NA	NA	NA
AUK61944.1|3457553_3458498_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AUK61945.1|3458566_3458737_-	hypothetical protein	NA	NA	NA	NA	NA
AUK61946.1|3459065_3464783_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AUK61947.1|3464788_3465916_+	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AUK61948.1|3465971_3466598_+	aminotransferase	NA	NA	NA	NA	NA
AUK62725.1|3466869_3467886_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AUK61949.1|3467981_3468692_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AUK62726.1|3468688_3469678_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK61950.1|3469773_3471405_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AUK61951.1|3471407_3472145_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK61952.1|3472300_3473173_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AUK61953.1|3473522_3474662_+	MFS transporter	NA	NA	NA	NA	NA
AUK61954.1|3474658_3475318_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AUK61955.1|3475389_3476022_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AUK61956.1|3476051_3476570_+	flavin reductase	NA	NA	NA	NA	NA
AUK61957.1|3476580_3477690_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AUK61958.1|3477736_3478591_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AUK61959.1|3478592_3479495_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK61960.1|3480717_3481668_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61961.1|3481764_3482898_-	hypothetical protein	NA	NA	NA	NA	NA
AUK61962.1|3482934_3483183_-	hypothetical protein	NA	NA	NA	NA	NA
AUK61963.1|3483422_3484412_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61964.1|3484587_3485376_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AUK61965.1|3485372_3486404_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AUK61966.1|3486422_3486986_-	anthranilate/aminodeoxychorismate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AUK61967.1|3487041_3488562_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AUK61968.1|3488825_3489530_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AUK61969.1|3489537_3490266_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AUK61970.1|3490380_3490755_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AUK61971.1|3490797_3492087_+	hypothetical protein	NA	NA	NA	NA	NA
AUK61972.1|3492083_3493253_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AUK61973.1|3493279_3494089_+	disulfide bond formation protein DsbC	NA	NA	NA	NA	NA
AUK61974.1|3494148_3495084_+	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AUK61975.1|3495096_3496047_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61976.1|3496145_3497108_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AUK61977.1|3497139_3497499_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AUK61978.1|3497623_3498526_+	oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AUK62727.1|3498527_3500294_-	peptidase M61	NA	NA	NA	NA	NA
AUK61979.1|3500334_3501111_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK61980.1|3502434_3503337_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
CP017882	Bordetella pertussis strain I384, complete genome	4108491	3518323	3576396	4108491	transposase,tRNA,holin	Catovirus(12.5%)	50	NA	NA
AUK61993.1|3518323_3519274_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK61994.1|3519402_3520536_-	peptidase	NA	NA	NA	NA	NA
AUK61995.1|3520579_3521485_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUK61996.1|3523184_3524105_-	peptide ABC transporter permease	NA	NA	NA	NA	NA
AUK61997.1|3524112_3525090_-	ABC transporter permease	NA	NA	NA	NA	NA
AUK61998.1|3525148_3526108_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AUK61999.1|3528157_3528394_-	hypothetical protein	NA	NA	NA	NA	NA
AUK62000.1|3528520_3529384_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AUK62001.1|3529472_3530294_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK62002.1|3530373_3531111_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK62003.1|3531107_3532100_-	2-nitropropane dioxygenase	NA	NA	NA	NA	NA
AUK62730.1|3532252_3532876_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AUK62004.1|3532920_3534069_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AUK62005.1|3536440_3537343_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62006.1|3537683_3538634_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62007.1|3538780_3539683_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62008.1|3539979_3540477_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62009.1|3540519_3542295_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62010.1|3542302_3543169_+	copper resistance protein	NA	NA	NA	NA	NA
AUK62011.1|3543175_3543901_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK62012.1|3544070_3544301_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62013.1|3544338_3544560_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62014.1|3545079_3545850_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK62015.1|3546163_3546754_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AUK62016.1|3546787_3548116_-	amidase	NA	NA	NA	NA	NA
AUK62017.1|3548190_3549336_-	transporter	NA	NA	NA	NA	NA
AUK62018.1|3549447_3550446_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62019.1|3550408_3550843_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AUK62020.1|3552359_3553244_+	EamA family transporter	NA	NA	NA	NA	NA
AUK62021.1|3553240_3554446_-	cardiolipin synthase B	NA	NA	NA	NA	NA
AUK62022.1|3554442_3555303_-	endonuclease	NA	NA	NA	NA	NA
AUK62023.1|3555415_3557206_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AUK62731.1|3557246_3557891_-	hypothetical protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
AUK62024.1|3557912_3558221_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AUK62732.1|3558386_3559673_-	hypothetical protein	NA	NA	NA	NA	NA
AUK62025.1|3559799_3561059_-|holin	choline dehydrogenase	holin	A0A2I2L3D3	Orpheovirus	27.6	6.1e-13
AUK62026.1|3561106_3562057_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62027.1|3564008_3565223_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AUK62028.1|3565328_3566318_+	D-arabinose 5-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AUK62029.1|3566314_3566923_+	phenylphosphate carboxylase subunit delta	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AUK62030.1|3566935_3567565_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AUK62031.1|3567561_3568182_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AUK62032.1|3568213_3569005_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AUK62033.1|3569358_3569580_+	ribosomal subunit interface protein	NA	NA	NA	NA	NA
AUK62733.1|3569856_3570312_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AUK62034.1|3570330_3571257_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AUK62035.1|3571310_3572597_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AUK62036.1|3573527_3574400_+	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AUK62037.1|3574396_3575347_+	hypothetical protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AUK62038.1|3575493_3576396_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
CP017882	Bordetella pertussis strain I384, complete genome	4108491	3708567	3751738	4108491	transposase,tRNA,integrase	Streptococcus_phage(11.11%)	41	3746577:3746595	3752361:3752379
AUK62146.1|3708567_3709470_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62147.1|3709617_3710520_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62148.1|3710516_3711152_-	lysine transporter LysE	NA	NA	NA	NA	NA
AUK62149.1|3711281_3712181_+	transcriptional regulator ArgP	NA	NA	NA	NA	NA
AUK62150.1|3712276_3712768_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62151.1|3712814_3713780_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK62152.1|3714913_3716155_+	2-aminoadipate aminotransferase	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
AUK62153.1|3716268_3717285_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
AUK62154.1|3717319_3717796_-	hypothetical protein	NA	NA	NA	NA	NA
AUK62155.1|3717938_3718847_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
AUK62156.1|3718960_3720073_-	DNA protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
AUK62743.1|3720173_3720659_-	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AUK62157.1|3720795_3722046_+	kynureninase	NA	NA	NA	NA	NA
AUK62158.1|3722147_3722660_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
AUK62159.1|3722758_3723709_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62160.1|3723774_3724713_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
AUK62161.1|3724735_3725362_-	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AUK62162.1|3725358_3726015_-	HAD family hydrolase	NA	NA	NA	NA	NA
AUK62163.1|3726011_3726614_-	hypothetical protein	NA	NA	NA	NA	NA
AUK62164.1|3726620_3727208_-	Rossman fold protein, TIGR00730 family	NA	A0A2I2L3F0	Orpheovirus	23.3	1.1e-07
AUK62165.1|3727388_3727958_+	bacterioferritin	NA	NA	NA	NA	NA
AUK62166.1|3728028_3729348_-	ribosomal protein S12 methylthiotransferase	NA	NA	NA	NA	NA
AUK62167.1|3729454_3729646_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AUK62168.1|3729897_3731187_+	glycine/D-amino acid oxidase	NA	NA	NA	NA	NA
AUK62169.1|3731341_3732337_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62170.1|3732421_3733096_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUK62171.1|3733092_3733995_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62172.1|3734204_3735446_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
AUK62173.1|3735442_3736387_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
AUK62174.1|3736553_3737456_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62175.1|3737415_3738345_-	hypothetical protein	NA	NA	NA	NA	NA
AUK62176.1|3738398_3738734_-	alkylhydroperoxidase	NA	NA	NA	NA	NA
AUK62177.1|3738778_3739543_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AUK62178.1|3739566_3740307_-	transcriptional regulator	NA	NA	NA	NA	NA
AUK62179.1|3740314_3741868_-	long-chain fatty acid--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	1.5e-13
AUK62180.1|3741902_3742880_-	hypothetical protein	NA	NA	NA	NA	NA
AUK62181.1|3743152_3743734_-	ureidoglycolate hydrolase	NA	NA	NA	NA	NA
AUK62182.1|3743785_3750919_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
3746577:3746595	attL	GCGACCCGCAGCGTGCCGG	NA	NA	NA	NA
AUK62183.1|3751134_3751266_-	entericidin	NA	NA	NA	NA	NA
AUK62744.1|3751297_3751423_-	hypothetical protein	NA	NA	NA	NA	NA
AUK62184.1|3751531_3751738_-|integrase	integrase	integrase	NA	NA	NA	NA
3752361:3752379	attR	GCGACCCGCAGCGTGCCGG	NA	NA	NA	NA
>prophage 33
CP017882	Bordetella pertussis strain I384, complete genome	4108491	3757673	3793348	4108491	transposase,integrase	Burkholderia_phage(11.11%)	37	3754212:3754229	3798852:3798869
3754212:3754229	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
AUK62191.1|3757673_3758576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62192.1|3758586_3759228_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62193.1|3759394_3759637_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62194.1|3759783_3760686_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62195.1|3760721_3761189_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
AUK62196.1|3761422_3761800_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62197.1|3761796_3761979_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62198.1|3761982_3762969_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
AUK62199.1|3762965_3763613_+	exonuclease	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
AUK62200.1|3763670_3764198_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62201.1|3764234_3765419_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
AUK62202.1|3765429_3765771_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
AUK62203.1|3765763_3765883_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62204.1|3765883_3766084_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62205.1|3766080_3767070_-|integrase	integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
AUK62206.1|3768556_3770527_-	hypothetical protein	NA	NA	NA	NA	NA
AUK62207.1|3770768_3771167_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62208.1|3771175_3772099_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AUK62209.1|3772604_3773507_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62210.1|3773737_3775429_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
AUK62211.1|3775477_3775750_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
AUK62212.1|3775746_3776118_-	ribonuclease P protein component	NA	NA	NA	NA	NA
AUK62213.1|3776213_3776348_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
AUK62214.1|3776753_3778163_+	chromosomal replication initiation protein DnaA	NA	NA	NA	NA	NA
AUK62215.1|3778165_3779275_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
AUK62216.1|3779369_3781823_+	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
AUK62217.1|3781941_3782733_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AUK62218.1|3782852_3784280_+	amidase	NA	NA	NA	NA	NA
AUK62745.1|3784318_3785290_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUK62219.1|3785374_3785578_+	hypothetical protein	NA	NA	NA	NA	NA
AUK62220.1|3785708_3786872_+	alpha-hydroxy-acid oxidizing enzyme	NA	NA	NA	NA	NA
AUK62221.1|3786959_3787805_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AUK62222.1|3789409_3790312_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AUK62223.1|3790308_3790653_-	hypothetical protein	NA	NA	NA	NA	NA
AUK62224.1|3790866_3791241_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AUK62225.1|3791315_3792374_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AUK62226.1|3792397_3793348_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
3798852:3798869	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
