assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002859225.1_ASM285922v1	CP018761	Bordetella bronchiseptica strain A310, complete genome	1	91544-91652	1	CRISPRCasFinder	no		csa3,PD-DExK,RT,DEDDh,DinG,cas3	Orphan	ATGGGGACTGGCTCCCGCCAACTTCAG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,PD-DExK,RT,DEDDh,DinG,cas3	NA,NA|47aa|down_0|CP018761.1_91716_91857_-	NA|314aa|up_9|CP018761.1_80544_81486_-	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold	NA|497aa|up_8|CP018761.1_81765_83256_+	PRK06151, PRK06151, N-ethylammeline chlorohydrolase; Provisional	NA|329aa|up_7|CP018761.1_83294_84281_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|382aa|up_6|CP018761.1_84433_85579_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|273aa|up_5|CP018761.1_85585_86404_+	pfam10707, YrbL-PhoP_reg, PhoP regulatory network protein YrbL	NA|324aa|up_4|CP018761.1_86560_87532_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|334aa|up_3|CP018761.1_87557_88559_+	cd13563, PBP2_SsuA_like_6, Putative substrate binding domain of sulfonate binding protein-like, a member of the type 2 periplasmic binding protein fold	NA|257aa|up_2|CP018761.1_88622_89393_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|264aa|up_1|CP018761.1_89380_90172_+	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|439aa|up_0|CP018761.1_90199_91516_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|47aa|down_0|CP018761.1_91716_91857_-	NA	NA|215aa|down_1|CP018761.1_91913_92558_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|726aa|down_2|CP018761.1_92593_94771_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|255aa|down_3|CP018761.1_95014_95779_+	PRK09990, PRK09990, DNA-binding transcriptional regulator GlcC; Provisional	NA|376aa|down_4|CP018761.1_95775_96903_-	COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]	NA|129aa|down_5|CP018761.1_97130_97517_-	pfam13663, DUF4148, Domain of unknown function (DUF4148)	NA|309aa|down_6|CP018761.1_97782_98709_-	PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase	NA|400aa|down_7|CP018761.1_98795_99995_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|165aa|down_8|CP018761.1_100133_100628_+	COG1956, COG1956, GAF domain-containing protein [Signal transduction mechanisms]	NA|300aa|down_9|CP018761.1_100915_101815_+	cd00950, DHDPS, Dihydrodipicolinate synthase (DHDPS)
GCA_002859225.1_ASM285922v1	CP018761	Bordetella bronchiseptica strain A310, complete genome	2	278291-278390	2	CRISPRCasFinder	no		csa3,PD-DExK,RT,DEDDh,DinG,cas3	Orphan	GACAGGCACCTGCCGAATCCTGG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,PD-DExK,RT,DEDDh,DinG,cas3	NA,NA	NA|460aa|up_9|CP018761.1_268419_269799_+	PRK09496, trkA, Trk system potassium transporter TrkA	NA|490aa|up_8|CP018761.1_269847_271317_+	PRK10750, PRK10750, Trk system potassium transporter TrkH	NA|178aa|up_7|CP018761.1_271396_271930_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|332aa|up_6|CP018761.1_271937_272933_-	COG1975, XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family [Posttranslational modification, protein turnover, chaperones]	NA|217aa|up_5|CP018761.1_273015_273666_+	cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function	NA|321aa|up_4|CP018761.1_273989_274952_+	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|251aa|up_3|CP018761.1_274977_275730_+	COG3473, COG3473, Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|274aa|up_2|CP018761.1_275747_276569_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|344aa|up_1|CP018761.1_276596_277628_+	COG2309, AmpS, Leucyl aminopeptidase (aminopeptidase T) [Amino acid transport and metabolism]	NA|206aa|up_0|CP018761.1_277643_278261_+	cd01015, CSHase, N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia	NA|172aa|down_0|CP018761.1_278410_278926_-	cd00667, ring_hydroxylating_dioxygenases_beta, Ring hydroxylating dioxygenase beta subunit	NA|430aa|down_1|CP018761.1_278940_280230_-	cd08880, RHO_alpha_C_ahdA1c-like, C-terminal catalytic domain of the large/alpha subunit (ahdA1c) of a ring-hydroxylating dioxygenase from Sphingomonas sp	NA|421aa|down_2|CP018761.1_280265_281528_-	PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional	NA|104aa|down_3|CP018761.1_281530_281842_-	cd03528, Rieske_RO_ferredoxin, Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO)	NA|368aa|down_4|CP018761.1_282311_283415_+	cd13682, PBP2_TRAP_alpha-ketoacid, Substrate-binding component of an alpha-keto acid binding Tripartite ATP-independent Periplasmic transporter and related proteins; contains the type 2 periplasmic-binding protein fold	NA|793aa|down_5|CP018761.1_283444_285823_+	pfam02738, Ald_Xan_dh_C2, Molybdopterin-binding domain of aldehyde dehydrogenase	NA|279aa|down_6|CP018761.1_285819_286656_+	pfam00941, FAD_binding_5, FAD binding domain in molybdopterin dehydrogenase	NA|396aa|down_7|CP018761.1_286652_287840_+	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|343aa|down_8|CP018761.1_287874_288903_+	pfam09084, NMT1, NMT1/THI5 like	NA|263aa|down_9|CP018761.1_288899_289688_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
GCA_002859225.1_ASM285922v1	CP018761	Bordetella bronchiseptica strain A310, complete genome	3	693193-693313	3	CRISPRCasFinder	no		csa3,PD-DExK,RT,DEDDh,DinG,cas3	Orphan	CGGGACAGGCACCAGCAGGTGCGGGCG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,PD-DExK,RT,DEDDh,DinG,cas3	NA|97aa|up_1|CP018761.1_691980_692271_+,NA	NA|233aa|up_9|CP018761.1_683529_684228_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|510aa|up_8|CP018761.1_684441_685971_+	cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B	NA|388aa|up_7|CP018761.1_685987_687151_+	PRK09028, PRK09028, cystathionine beta-lyase; Provisional	NA|117aa|up_6|CP018761.1_687181_687532_+	cd06150, YjgF_YER057c_UK114_like_2, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|320aa|up_5|CP018761.1_687834_688794_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|371aa|up_4|CP018761.1_688818_689931_+	COG5276, COG5276, Uncharacterized conserved protein [Function unknown]	NA|345aa|up_3|CP018761.1_689945_690980_+	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|334aa|up_2|CP018761.1_690976_691978_+	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment	NA|97aa|up_1|CP018761.1_691980_692271_+	NA	NA|248aa|up_0|CP018761.1_692360_693104_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|297aa|down_0|CP018761.1_693575_694466_+	cd00408, DHDPS-like, Dihydrodipicolinate synthase family	NA|412aa|down_1|CP018761.1_694466_695702_+	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|277aa|down_2|CP018761.1_695786_696617_+	cd13713, PBP2_Cystine_like_1, Substrate binding domain of putative ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|217aa|down_3|CP018761.1_696613_697264_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|261aa|down_4|CP018761.1_697260_698043_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|413aa|down_5|CP018761.1_698039_699278_+	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|266aa|down_6|CP018761.1_699350_700148_+	TIGR02431, p-hydroxybenzoate_hydroxylase_transcriptional, beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family	NA|421aa|down_7|CP018761.1_700185_701448_+	PRK13590, PRK13590, putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional	NA|425aa|down_8|CP018761.1_701453_702728_-	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|309aa|down_9|CP018761.1_702736_703663_-	cd10977, CE4_PuuE_SpCDA1, Catalytic domain of bacterial PuuE allantoinases, Schizosaccharomyces pombe chitin deacetylase 1 (SpCDA1), and similar proteins
GCA_002859225.1_ASM285922v1	CP018761	Bordetella bronchiseptica strain A310, complete genome	4	1291862-1291936	4	CRISPRCasFinder	no		csa3,PD-DExK,RT,DEDDh,DinG,cas3	Orphan	CGCCGCGCTGCACGGTGCCTGTCCC	25	0	0	NA	NA	NA	1	1	Orphan	csa3,PD-DExK,RT,DEDDh,DinG,cas3	NA|97aa|up_5|CP018761.1_1287130_1287421_-,NA|111aa|down_4|CP018761.1_1296297_1296630_+	NA|341aa|up_9|CP018761.1_1284209_1285232_-	cd13603, PBP2_TRAP_Siap_TeaA_like, Substrate-binding domain of a sialic acid binding Tripartite ATP-independent  Periplasmic transport system (SiaP) and related proteins; the type 2 periplasmic-binding protein fold	NA|207aa|up_8|CP018761.1_1285266_1285887_-	cd03022, DsbA_HCCA_Iso, DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway	NA|140aa|up_7|CP018761.1_1285937_1286357_-	TIGR02096, putative_cyclase, conserved hypothetical protein, steroid delta-isomerase-related	NA|176aa|up_6|CP018761.1_1286565_1287093_-	cd12108, Hr-like, Hemerythrin-like domain	NA|97aa|up_5|CP018761.1_1287130_1287421_-	NA	NA|212aa|up_4|CP018761.1_1287417_1288053_-	pfam09859, Oxygenase-NA, Oxygenase, catalyzing oxidative methylation of damaged DNA	NA|359aa|up_3|CP018761.1_1288049_1289126_-	PRK15435, PRK15435, bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	NA|220aa|up_2|CP018761.1_1289184_1289844_-	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]	NA|168aa|up_1|CP018761.1_1289945_1290449_-	cd07246, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|386aa|up_0|CP018761.1_1290616_1291774_-	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain	NA|463aa|down_0|CP018761.1_1292113_1293502_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|336aa|down_1|CP018761.1_1293503_1294511_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|49aa|down_2|CP018761.1_1294521_1294668_+	pfam10617, DUF2474, Protein of unknown function (DUF2474)	NA|474aa|down_3|CP018761.1_1294684_1296106_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|111aa|down_4|CP018761.1_1296297_1296630_+	NA	NA|1054aa|down_5|CP018761.1_1296640_1299802_-	PRK14991, PRK14991, tetrathionate reductase subunit TtrA	NA|345aa|down_6|CP018761.1_1299828_1300863_-	PRK14992, PRK14992, tetrathionate reductase subunit TtrC	NA|258aa|down_7|CP018761.1_1300876_1301650_-	PRK14993, PRK14993, tetrathionate reductase subunit TtrB	NA|118aa|down_8|CP018761.1_1301965_1302319_+	cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands	NA|309aa|down_9|CP018761.1_1302341_1303268_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
GCA_002859225.1_ASM285922v1	CP018761	Bordetella bronchiseptica strain A310, complete genome	5	1425213-1425323	5	CRISPRCasFinder	no		csa3,PD-DExK,RT,DEDDh,DinG,cas3	Orphan	AGCGGGCGCAGCGTGGGGGCTTTTTTTGC	29	1	3	1425242-1425294|1425242-1425294|1425242-1425294	CP018761.1_3104681-3104629|CP018761.1_3249394-3249446|CP018761.1_3725311-3725259	NA	1	1	Orphan	csa3,PD-DExK,RT,DEDDh,DinG,cas3	NA,NA|239aa|down_2|CP018761.1_1431469_1432186_+,NA|120aa|down_5|CP018761.1_1433043_1433403_+,NA|247aa|down_9|CP018761.1_1437267_1438008_+	NA|341aa|up_9|CP018761.1_1413533_1414556_-	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]	NA|476aa|up_8|CP018761.1_1414552_1415980_-	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|243aa|up_7|CP018761.1_1416136_1416865_+	cd03389, PAP2_lipid_A_1_phosphatase, PAP2_like proteins, Lipid A 1-phosphatase subfamily	NA|312aa|up_6|CP018761.1_1417146_1418082_-	PRK13022, secF, protein translocase subunit SecF	NA|627aa|up_5|CP018761.1_1418131_1420012_-	PRK05812, secD, preprotein translocase subunit SecD; Reviewed	NA|115aa|up_4|CP018761.1_1420078_1420423_-	PRK05585, yajC, preprotein translocase subunit YajC; Validated	NA|379aa|up_3|CP018761.1_1420568_1421705_-	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional	NA|358aa|up_2|CP018761.1_1421701_1422775_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|479aa|up_1|CP018761.1_1422932_1424369_+	COG2027, DacB, D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) [Cell envelope biogenesis, outer membrane]	NA|214aa|up_0|CP018761.1_1424459_1425101_+	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|921aa|down_0|CP018761.1_1426954_1429717_+	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain	NA|474aa|down_1|CP018761.1_1429783_1431205_-	PRK10637, cysG, siroheme synthase CysG	NA|239aa|down_2|CP018761.1_1431469_1432186_+	NA	NA|106aa|down_3|CP018761.1_1432270_1432588_+	pfam05957, DUF883, Bacterial protein of unknown function (DUF883)	NA|138aa|down_4|CP018761.1_1432628_1433042_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|120aa|down_5|CP018761.1_1433043_1433403_+	NA	NA|515aa|down_6|CP018761.1_1433445_1434990_-	PRK10922, PRK10922, 4-hydroxy-3-polyprenylbenzoate decarboxylase	NA|277aa|down_7|CP018761.1_1435073_1435904_+	cd00254, LT-like, lytic transglycosylase(LT)-like domain	NA|385aa|down_8|CP018761.1_1435938_1437093_-	PRK07337, PRK07337, pyridoxal phosphate-dependent aminotransferase	NA|247aa|down_9|CP018761.1_1437267_1438008_+	NA
GCA_002859225.1_ASM285922v1	CP018761	Bordetella bronchiseptica strain A310, complete genome	6	1483150-1483248	6	CRISPRCasFinder	no		csa3,PD-DExK,RT,DEDDh,DinG,cas3	Orphan	GCCGGTGCCAGTCCCCCTTGCGGGGACAGGCAC	33	0	0	NA	NA	NA	1	1	Orphan	csa3,PD-DExK,RT,DEDDh,DinG,cas3	NA,NA	NA|397aa|up_9|CP018761.1_1473112_1474303_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|351aa|up_8|CP018761.1_1474307_1475360_+	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|341aa|up_7|CP018761.1_1475496_1476519_+	cd13692, PBP2_BztA, Substrate bindng domain of ABC glutamate/glutamine/aspartate/asparagine transporter; the type 2 periplasmic binding protein fold	NA|279aa|up_6|CP018761.1_1476610_1477447_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|302aa|up_5|CP018761.1_1477639_1478545_+	cd11592, Agmatinase_PAH, Agmatinase-like family includes proclavaminic acid amidinohydrolase	NA|264aa|up_4|CP018761.1_1478571_1479363_+	cd13530, PBP2_peptides_like, Peptide-binding protein and related homologs; type 2 periplasmic binding protein fold	NA|231aa|up_3|CP018761.1_1479385_1480078_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|251aa|up_2|CP018761.1_1480099_1480852_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|520aa|up_1|CP018761.1_1480980_1482540_+	PRK07586, PRK07586, acetolactate synthase large subunit	NA|148aa|up_0|CP018761.1_1482673_1483117_+	cd03454, YdeM, YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function	NA|398aa|down_0|CP018761.1_1483395_1484589_-	cd01151, GCD, Glutaryl-CoA dehydrogenase	NA|565aa|down_1|CP018761.1_1484668_1486363_-	PRK08199, PRK08199, thiamine pyrophosphate protein; Validated	NA|296aa|down_2|CP018761.1_1486520_1487408_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|311aa|down_3|CP018761.1_1487445_1488378_+	PRK00283, xerD, tyrosine recombinase	NA|163aa|down_4|CP018761.1_1488391_1488880_+	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|193aa|down_5|CP018761.1_1488999_1489578_+	cd03169, GATase1_PfpI_1, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus	NA|123aa|down_6|CP018761.1_1489683_1490052_+	COG4321, COG4321, Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis [General function prediction only]	NA|371aa|down_7|CP018761.1_1490058_1491171_-	PRK11669, pbpG, D-alanyl-D-alanine endopeptidase; Provisional	NA|401aa|down_8|CP018761.1_1491857_1493060_+	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters	NA|887aa|down_9|CP018761.1_1493263_1495924_+	TIGR03623, TIGR03623, probable DNA repair protein
GCA_002859225.1_ASM285922v1	CP018761	Bordetella bronchiseptica strain A310, complete genome	7	1765565-1765664	7	CRISPRCasFinder	no		csa3,PD-DExK,RT,DEDDh,DinG,cas3	Orphan	GGACAGGCACCTGCGACCGAGCCAC	25	0	0	NA	NA	NA	1	1	Orphan	csa3,PD-DExK,RT,DEDDh,DinG,cas3	NA,NA	NA|529aa|up_9|CP018761.1_1754725_1756312_+	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|288aa|up_8|CP018761.1_1756336_1757200_+	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase	NA|259aa|up_7|CP018761.1_1757403_1758180_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_6|CP018761.1_1758172_1758682_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|228aa|up_5|CP018761.1_1758810_1759494_-	sd00006, TPR, Tetratricopeptide repeat	NA|486aa|up_4|CP018761.1_1759733_1761191_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|215aa|up_3|CP018761.1_1761210_1761855_+	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]	NA|322aa|up_2|CP018761.1_1761891_1762857_+	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|345aa|up_1|CP018761.1_1762917_1763952_+	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]	NA|422aa|up_0|CP018761.1_1764051_1765317_+	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|167aa|down_0|CP018761.1_1765808_1766309_+	cd06991, cupin_TcmJ-like, TcmJ monooxygenase and related proteins, cupin domain	NA|105aa|down_1|CP018761.1_1766350_1766665_+	pfam07978, NIPSNAP, NIPSNAP	NA|314aa|down_2|CP018761.1_1766674_1767616_+	PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenase; Validated	NA|175aa|down_3|CP018761.1_1767612_1768137_+	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component	NA|423aa|down_4|CP018761.1_1768139_1769408_+	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]	NA|328aa|down_5|CP018761.1_1769436_1770420_+	cd13603, PBP2_TRAP_Siap_TeaA_like, Substrate-binding domain of a sialic acid binding Tripartite ATP-independent  Periplasmic transport system (SiaP) and related proteins; the type 2 periplasmic-binding protein fold	NA|270aa|down_6|CP018761.1_1770416_1771226_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|268aa|down_7|CP018761.1_1771222_1772026_+	PRK13301, PRK13301, putative L-aspartate dehydrogenase; Provisional	NA|256aa|down_8|CP018761.1_1772040_1772808_+	PRK06138, PRK06138, SDR family oxidoreductase	NA|213aa|down_9|CP018761.1_1772895_1773534_+	COG1309, AcrR, Transcriptional regulator [Transcription]
GCA_002859225.1_ASM285922v1	CP018761	Bordetella bronchiseptica strain A310, complete genome	8	2262083-2262168	8	CRISPRCasFinder	no		csa3,PD-DExK,RT,DEDDh,DinG,cas3	Orphan	CTGTCCCCGCCGGGACAGGCACAC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,PD-DExK,RT,DEDDh,DinG,cas3	NA,NA	NA|682aa|up_9|CP018761.1_2253727_2255773_-	pfam04632, FUSC, Fusaric acid resistance protein family	NA|158aa|up_8|CP018761.1_2255769_2256243_-	PRK03573, PRK03573, transcriptional regulator SlyA; Provisional	NA|207aa|up_7|CP018761.1_2256494_2257115_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|267aa|up_6|CP018761.1_2257250_2258051_+	PRK07090, PRK07090, class II aldolase/adducin domain protein; Provisional	NA|364aa|up_5|CP018761.1_2258105_2259197_+	cd13682, PBP2_TRAP_alpha-ketoacid, Substrate-binding component of an alpha-keto acid binding Tripartite ATP-independent Periplasmic transporter and related proteins; contains the type 2 periplasmic-binding protein fold	NA|148aa|up_4|CP018761.1_2259218_2259662_-	pfam01242, PTPS, 6-pyruvoyl tetrahydropterin synthase	NA|211aa|up_3|CP018761.1_2259690_2260323_-	TIGR04508, queE_Cx14CxxC, 7-carboxy-7-deazaguanine synthase, Cx14CxxC type	NA|139aa|up_2|CP018761.1_2260433_2260850_+	PRK09256, PRK09256, aminoacyl-tRNA hydrolase	NA|231aa|up_1|CP018761.1_2260842_2261535_+	pfam09997, DUF2238, Predicted membrane protein (DUF2238)	NA|125aa|up_0|CP018761.1_2261641_2262016_+	COG3686, COG3686, Predicted membrane protein [Function unknown]	NA|270aa|down_0|CP018761.1_2262195_2263005_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|315aa|down_1|CP018761.1_2263100_2264045_+	cd00408, DHDPS-like, Dihydrodipicolinate synthase family	NA|321aa|down_2|CP018761.1_2264092_2265055_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|146aa|down_3|CP018761.1_2265145_2265583_-	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain	NA|268aa|down_4|CP018761.1_2265641_2266445_-	pfam05742, TANGO2, Transport and Golgi organisation 2	NA|230aa|down_5|CP018761.1_2266604_2267294_+	cd03141, GATase1_Hsp31_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein	NA|535aa|down_6|CP018761.1_2267308_2268913_-	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|263aa|down_7|CP018761.1_2268952_2269741_-	PRK10906, PRK10906, DeoR/GlpR family transcriptional regulator	NA|361aa|down_8|CP018761.1_2269866_2270949_+	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]	NA|363aa|down_9|CP018761.1_2270948_2272037_+	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
GCA_002859225.1_ASM285922v1	CP018761	Bordetella bronchiseptica strain A310, complete genome	9	2819356-2819469	9	CRISPRCasFinder	no		csa3,PD-DExK,RT,DEDDh,DinG,cas3	Orphan	CCCCGCACGGGGACTGGCGCCTGCCCC	27	0	0	NA	NA	NA	1	1	Orphan	csa3,PD-DExK,RT,DEDDh,DinG,cas3	NA,NA	NA|287aa|up_9|CP018761.1_2808301_2809162_-	PRK10611, PRK10611, protein-glutamate O-methyltransferase CheR	NA|569aa|up_8|CP018761.1_2809170_2810877_-	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional	NA|167aa|up_7|CP018761.1_2810950_2811451_-	PRK10612, PRK10612, chemotaxis protein CheW	NA|686aa|up_6|CP018761.1_2811465_2813523_-	PRK10547, PRK10547, chemotaxis protein CheA; Provisional	NA|127aa|up_5|CP018761.1_2813549_2813930_-	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins	NA|316aa|up_4|CP018761.1_2813944_2814892_-	PRK09041, motB, motility protein MotB	NA|292aa|up_3|CP018761.1_2814904_2815780_-	PRK09110, PRK09110, flagellar motor stator protein MotA	NA|187aa|up_2|CP018761.1_2815900_2816461_-	PRK12722, PRK12722, flagellar transcriptional regulator FlhC	NA|108aa|up_1|CP018761.1_2816495_2816819_-	PRK02909, PRK02909, flagellar transcriptional regulator FlhD	NA|246aa|up_0|CP018761.1_2817254_2817992_+	PRK06986, fliA, flagellar biosynthesis sigma factor; Validated	NA|392aa|down_0|CP018761.1_2819697_2820873_+	PRK06819, PRK06819, FliC/FljB family flagellin	NA|592aa|down_1|CP018761.1_2821095_2822871_-	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|559aa|down_2|CP018761.1_2822883_2824560_-	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed	NA|902aa|down_3|CP018761.1_2824572_2827278_-	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|585aa|down_4|CP018761.1_2827570_2829325_+	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	NA|209aa|down_5|CP018761.1_2829321_2829948_+	COG4566, TtrR, Response regulator [Signal transduction mechanisms]	NA|284aa|down_6|CP018761.1_2829944_2830796_+	PRK14189, PRK14189, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA|687aa|down_7|CP018761.1_2830925_2832986_+	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP)	NA|205aa|down_8|CP018761.1_2833149_2833764_+	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold	NA|84aa|down_9|CP018761.1_2833909_2834161_+	COG2261, COG2261, Predicted membrane protein [Function unknown]
GCA_002859225.1_ASM285922v1	CP018761	Bordetella bronchiseptica strain A310, complete genome	10	3104525-3104648	10	CRISPRCasFinder	no		csa3,PD-DExK,RT,DEDDh,DinG,cas3	Orphan	GCCCCCACGCTGCGCCCGCTACGCGGGCTTGCTGCCCCCC	40	0	0	NA	NA	NA	1	1	Orphan	csa3,PD-DExK,RT,DEDDh,DinG,cas3	NA,NA	NA|621aa|up_9|CP018761.1_3094442_3096305_-	PRK05183, hscA, chaperone protein HscA; Provisional	NA|171aa|up_8|CP018761.1_3096434_3096947_-	PRK03578, hscB, Fe-S protein assembly co-chaperone HscB	NA|108aa|up_7|CP018761.1_3096949_3097273_-	TIGR02011, Protein_yfhF	NA|137aa|up_6|CP018761.1_3097274_3097685_-	PRK11325, PRK11325, scaffold protein; Provisional	NA|404aa|up_5|CP018761.1_3097718_3098930_-	PRK14012, PRK14012, IscS subfamily cysteine desulfurase	NA|171aa|up_4|CP018761.1_3098947_3099460_-	TIGR02010, Putative_HTH-type_transcriptional_regulator, iron-sulfur cluster assembly transcription factor IscR	NA|164aa|up_3|CP018761.1_3099675_3100167_-	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|676aa|up_2|CP018761.1_3100428_3102456_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|401aa|up_1|CP018761.1_3102533_3103736_+	PRK09257, PRK09257, aromatic amino acid transaminase	NA|243aa|up_0|CP018761.1_3103786_3104515_+	PRK00215, PRK00215, transcriptional repressor LexA	NA|566aa|down_0|CP018761.1_3104735_3106433_-	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain	NA|321aa|down_1|CP018761.1_3106704_3107667_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|214aa|down_2|CP018761.1_3107701_3108343_-	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit	NA|239aa|down_3|CP018761.1_3108335_3109052_-	TIGR02429, 3-oxoadipate_CoA-transferase_subunit_A, 3-oxoacid CoA-transferase, A subunit	NA|332aa|down_4|CP018761.1_3109048_3110044_-	cd00567, ACAD, Acyl-CoA dehydrogenase	NA|388aa|down_5|CP018761.1_3110065_3111229_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|264aa|down_6|CP018761.1_3111225_3112017_-	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|386aa|down_7|CP018761.1_3112023_3113181_-	PRK06158, PRK06158, thiolase; Provisional	NA|144aa|down_8|CP018761.1_3113177_3113609_-	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|266aa|down_9|CP018761.1_3113605_3114403_-	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
GCA_002859225.1_ASM285922v1	CP018761	Bordetella bronchiseptica strain A310, complete genome	11	3556412-3556520	11	CRISPRCasFinder	no	DEDDh	csa3,PD-DExK,RT,DEDDh,DinG,cas3	Unclear	CCTGCCGACTTCCGGGGTGCCTGTCCC	27	0	0	NA	NA	NA	1	1	Orphan	csa3,PD-DExK,RT,DEDDh,DinG,cas3	NA,NA	NA|363aa|up_9|CP018761.1_3548108_3549197_-	TIGR02160, 12-phenylacetyl-CoA_epoxidase_subunit_E, phenylacetate-CoA oxygenase/reductase, PaaK subunit	NA|169aa|up_8|CP018761.1_3549208_3549715_-	TIGR02159, Putative_12-phenylacetyl-CoA_epoxidase_subunit_D, phenylacetate-CoA oxygenase, PaaJ subunit	NA|255aa|up_7|CP018761.1_3549711_3550476_-	pfam05138, PaaA_PaaC, Phenylacetic acid catabolic protein	NA|95aa|up_6|CP018761.1_3550491_3550776_-	PRK13781, paaB, phenylacetate-CoA oxygenase subunit PaaB; Provisional	NA|330aa|up_5|CP018761.1_3550840_3551830_-	PRK13778, paaA, phenylacetate-CoA oxygenase subunit PaaA; Provisional	NA|310aa|up_4|CP018761.1_3552001_3552931_+	TIGR02277, Transcriptional_repressor_PaaX, phenylacetic acid degradation operon negative regulatory protein PaaX	NA|229aa|up_3|CP018761.1_3552902_3553589_-	COG0062, COG0062, Uncharacterized conserved protein [Function unknown]	DEDDh|182aa|up_2|CP018761.1_3553622_3554168_-	PRK05359, PRK05359, oligoribonuclease; Provisional	NA|422aa|up_1|CP018761.1_3554212_3555478_+	cd07343, M48A_Zmpste24p_like, Peptidase M48 subfamily A, a type 1 CaaX endopeptidase	NA|301aa|up_0|CP018761.1_3555474_3556377_+	PRK00098, PRK00098, GTPase RsgA; Reviewed	NA|385aa|down_0|CP018761.1_3556553_3557708_-	cd19094, AKR_Tas-like, Escherichia coli Tas protein and similar proteins	NA|242aa|down_1|CP018761.1_3557704_3558430_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|127aa|down_2|CP018761.1_3558838_3559219_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|291aa|down_3|CP018761.1_3559526_3560399_+	TIGR03340, phn_DUF6, phosphonate utilization associated putative membrane protein	NA|127aa|down_4|CP018761.1_3560406_3560787_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|425aa|down_5|CP018761.1_3560940_3562215_-	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B	NA|433aa|down_6|CP018761.1_3562403_3563702_-	PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional	NA|303aa|down_7|CP018761.1_3563754_3564663_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|251aa|down_8|CP018761.1_3564712_3565465_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|355aa|down_9|CP018761.1_3565461_3566526_-	cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter
GCA_002859225.1_ASM285922v1	CP018761	Bordetella bronchiseptica strain A310, complete genome	13	3989191-3989272	13	CRISPRCasFinder	no		csa3,PD-DExK,RT,DEDDh,DinG,cas3	Orphan	CTGTCCCCGCCGGGACAGGCACC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,PD-DExK,RT,DEDDh,DinG,cas3	NA|125aa|up_1|CP018761.1_3985631_3986006_-,NA|81aa|down_4|CP018761.1_3993601_3993844_-	NA|327aa|up_9|CP018761.1_3978951_3979932_-	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins	NA|419aa|up_8|CP018761.1_3980130_3981387_-	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|142aa|up_7|CP018761.1_3981589_3982015_+	pfam08897, DUF1841, Domain of unknown function (DUF1841)	NA|121aa|up_6|CP018761.1_3982065_3982428_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|118aa|up_5|CP018761.1_3982440_3982794_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|296aa|up_4|CP018761.1_3982954_3983842_+	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|391aa|up_3|CP018761.1_3983863_3985036_+	COG3825, COG3825, Uncharacterized protein conserved in bacteria [Function unknown]	NA|185aa|up_2|CP018761.1_3985039_3985594_-	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|125aa|up_1|CP018761.1_3985631_3986006_-	NA	NA|917aa|up_0|CP018761.1_3986338_3989089_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|374aa|down_0|CP018761.1_3989279_3990401_-	PRK10767, PRK10767, chaperone protein DnaJ; Provisional	NA|642aa|down_1|CP018761.1_3990501_3992427_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|127aa|down_2|CP018761.1_3992517_3992898_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|185aa|down_3|CP018761.1_3992905_3993460_-	PRK14139, PRK14139, heat shock protein GrpE; Provisional	NA|81aa|down_4|CP018761.1_3993601_3993844_-	NA	NA|363aa|down_5|CP018761.1_3993925_3995014_-	PRK00035, hemH, ferrochelatase; Reviewed	NA|335aa|down_6|CP018761.1_3995071_3996076_-	PRK00082, hrcA, heat-inducible transcription repressor; Provisional	NA|300aa|down_7|CP018761.1_3996190_3997090_+	PRK02155, ppnK, NAD kinase	NA|554aa|down_8|CP018761.1_3997105_3998767_+	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|140aa|down_9|CP018761.1_3999247_3999667_-	pfam01475, FUR, Ferric uptake regulator family
GCA_002859225.1_ASM285922v1	CP018761	Bordetella bronchiseptica strain A310, complete genome	14	4338630-4338723	14	CRISPRCasFinder	no	DEDDh	csa3,PD-DExK,RT,DEDDh,DinG,cas3	Unclear	GTGCCTGTCCCCGCCGGGACAGGCAC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,PD-DExK,RT,DEDDh,DinG,cas3	NA,NA	NA|398aa|up_9|CP018761.1_4327081_4328275_-	PRK06954, PRK06954, acetyl-CoA C-acetyltransferase	NA|343aa|up_8|CP018761.1_4328341_4329370_-	pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal domain	NA|387aa|up_7|CP018761.1_4329396_4330557_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|326aa|up_6|CP018761.1_4330694_4331672_+	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold	NA|324aa|up_5|CP018761.1_4331682_4332654_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|262aa|up_4|CP018761.1_4332720_4333506_-	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein	NA|411aa|up_3|CP018761.1_4333498_4334731_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|252aa|up_2|CP018761.1_4334927_4335683_-	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|173aa|up_1|CP018761.1_4335793_4336312_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|708aa|up_0|CP018761.1_4336308_4338432_-	PRK00007, PRK00007, elongation factor G; Reviewed	NA|157aa|down_0|CP018761.1_4338795_4339266_-	pfam00582, Usp, Universal stress protein family	NA|115aa|down_1|CP018761.1_4339354_4339699_-	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|467aa|down_2|CP018761.1_4339798_4341199_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|305aa|down_3|CP018761.1_4341387_4342302_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|220aa|down_4|CP018761.1_4342298_4342958_+	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|308aa|down_5|CP018761.1_4343047_4343971_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|152aa|down_6|CP018761.1_4343976_4344432_-	COG4125, COG4125, Predicted membrane protein [Function unknown]	NA|368aa|down_7|CP018761.1_4344428_4345532_-	cd10807, YdjC_like_3, uncharacterized YdjC-like family proteins from bacteria	NA|540aa|down_8|CP018761.1_4345719_4347339_-	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|353aa|down_9|CP018761.1_4347335_4348394_-	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1
GCA_002859225.1_ASM285922v1	CP018761	Bordetella bronchiseptica strain A310, complete genome	15	4612795-4612964	15	CRISPRCasFinder	no		csa3,PD-DExK,RT,DEDDh,DinG,cas3	Orphan	GGGTGCCTGTCCCCGCGGGGACAG	24	0	0	NA	NA	NA	3	3	Orphan	csa3,PD-DExK,RT,DEDDh,DinG,cas3	NA,NA	NA|429aa|up_9|CP018761.1_4604802_4606089_-	pfam00034, Cytochrom_C, Cytochrome c	NA|251aa|up_8|CP018761.1_4606099_4606852_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|291aa|up_7|CP018761.1_4607023_4607896_+	PRK05416, PRK05416, RNase adapter RapZ	NA|317aa|up_6|CP018761.1_4607892_4608843_+	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|191aa|up_5|CP018761.1_4608839_4609412_-	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|313aa|up_4|CP018761.1_4609408_4610347_-	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|178aa|up_3|CP018761.1_4610413_4610947_+	PRK14685, PRK14685, hypothetical protein; Provisional	NA|201aa|up_2|CP018761.1_4610946_4611549_+	PRK13936, PRK13936, phosphoheptose isomerase; Provisional	NA|248aa|up_1|CP018761.1_4611545_4612289_+	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|164aa|up_0|CP018761.1_4612285_4612777_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|263aa|down_0|CP018761.1_4612978_4613767_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|301aa|down_1|CP018761.1_4614028_4614931_+	PRK00942, PRK00942, acetylglutamate kinase; Provisional	NA|249aa|down_2|CP018761.1_4614930_4615677_+	cd02604, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to Saccharomyces cerevisiae Phm8p and Sdt1p	NA|192aa|down_3|CP018761.1_4615726_4616302_+	PRK09480, slmA, division inhibitor protein; Provisional	NA|498aa|down_4|CP018761.1_4616514_4618008_+	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|352aa|down_5|CP018761.1_4618018_4619074_+	pfam02615, Ldh_2, Malate/L-lactate dehydrogenase	NA|379aa|down_6|CP018761.1_4619099_4620236_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|651aa|down_7|CP018761.1_4620232_4622185_-	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|188aa|down_8|CP018761.1_4622198_4622762_-	TIGR03426, shape_MreD, rod shape-determining protein MreD	NA|295aa|down_9|CP018761.1_4622748_4623633_-	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional
GCA_002859225.1_ASM285922v1	CP018761	Bordetella bronchiseptica strain A310, complete genome	16	4678065-4678151	16	CRISPRCasFinder	no		csa3,PD-DExK,RT,DEDDh,DinG,cas3	Orphan	CTGTCCCCGCCGGGACAGGCACACT	25	1	4	4678090-4678126|4678090-4678126|4678090-4678126|4678090-4678126	CP018761.1_693175-693139|CP018761.1_1570928-1570964|CP018761.1_2557777-2557741|CP018761.1_1499406-1499370	NA	1	1	Orphan	csa3,PD-DExK,RT,DEDDh,DinG,cas3	NA,NA|79aa|down_8|CP018761.1_4686817_4687054_+	NA|382aa|up_9|CP018761.1_4666946_4668092_+	cd19988, PBP1_ABC_HAAT-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides	NA|443aa|up_8|CP018761.1_4668166_4669495_+	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|197aa|up_7|CP018761.1_4669528_4670119_-	COG5553, COG5553, Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]	NA|257aa|up_6|CP018761.1_4670432_4671203_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|387aa|up_5|CP018761.1_4671219_4672380_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|245aa|up_4|CP018761.1_4672376_4673111_+	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily	NA|312aa|up_3|CP018761.1_4673117_4674053_-	pfam05275, CopB, Copper resistance protein B precursor (CopB)	NA|592aa|up_2|CP018761.1_4674099_4675875_-	TIGR01480, unnamed_protein_product, copper-resistance protein, CopA family	NA|168aa|up_1|CP018761.1_4675917_4676421_-	cd04211, Cupredoxin_like_2, Uncharacterized Cupredoxin-like subfamily	NA|327aa|up_0|CP018761.1_4676935_4677916_+	COG3245, CycB, Cytochrome c5 [Energy production and conversion]	NA|505aa|down_0|CP018761.1_4678204_4679719_-	PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated	NA|410aa|down_1|CP018761.1_4679802_4681032_-	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]	NA|383aa|down_2|CP018761.1_4681144_4682293_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|208aa|down_3|CP018761.1_4682337_4682961_-	pfam17932, TetR_C_24, Tetracyclin repressor-like, C-terminal domain	NA|331aa|down_4|CP018761.1_4683113_4684106_+	COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]	NA|246aa|down_5|CP018761.1_4684102_4684840_+	PRK06688, PRK06688, enoyl-CoA hydratase; Provisional	NA|274aa|down_6|CP018761.1_4684919_4685741_-	PRK07327, PRK07327, enoyl-CoA hydratase/isomerase family protein	NA|287aa|down_7|CP018761.1_4685829_4686690_+	cd01171, YXKO-related, B	NA|79aa|down_8|CP018761.1_4686817_4687054_+	NA	NA|543aa|down_9|CP018761.1_4687350_4688979_+	cd08498, PBP2_NikA_DppA_OppA_like_2, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold
GCA_002859225.1_ASM285922v1	CP018761	Bordetella bronchiseptica strain A310, complete genome	17	4803485-4803597	17	CRISPRCasFinder	no		csa3,PD-DExK,RT,DEDDh,DinG,cas3	Orphan	GTGCCTGTCCCCGCGGGGACAGGCACACCGCCGTGACGGCCA	42	0	0	NA	NA	NA	1	1	Orphan	csa3,PD-DExK,RT,DEDDh,DinG,cas3	NA,NA|132aa|down_8|CP018761.1_4812198_4812594_+	NA|608aa|up_9|CP018761.1_4791012_4792836_-	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system	NA|295aa|up_8|CP018761.1_4792832_4793717_-	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins	NA|403aa|up_7|CP018761.1_4793786_4794995_-	cd06335, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions	NA|466aa|up_6|CP018761.1_4795069_4796467_-	pfam03972, MmgE_PrpD, MmgE/PrpD family	NA|498aa|up_5|CP018761.1_4796487_4797981_-	PRK06145, PRK06145, acyl-CoA synthetase; Validated	NA|392aa|up_4|CP018761.1_4798060_4799236_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|422aa|up_3|CP018761.1_4799241_4800507_-	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed	NA|262aa|up_2|CP018761.1_4800510_4801296_-	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]	NA|325aa|up_1|CP018761.1_4801310_4802285_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|324aa|up_0|CP018761.1_4802286_4803258_-	cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)	NA|262aa|down_0|CP018761.1_4803687_4804473_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|259aa|down_1|CP018761.1_4804549_4805326_-	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily	NA|711aa|down_2|CP018761.1_4805322_4807455_-	TIGR02717, Uncharacterized_protein_MJ0590, acetyl coenzyme A synthetase (ADP forming), alpha domain	NA|331aa|down_3|CP018761.1_4807456_4808449_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|383aa|down_4|CP018761.1_4808696_4809845_+	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|269aa|down_5|CP018761.1_4809841_4810648_+	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]	NA|385aa|down_6|CP018761.1_4810644_4811799_+	cd00829, SCP-x_thiolase, Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2  has multiple roles in intracellular lipid circulation and metabolism	NA|134aa|down_7|CP018761.1_4811800_4812202_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|132aa|down_8|CP018761.1_4812198_4812594_+	NA	NA|131aa|down_9|CP018761.1_4812590_4812983_+	cd03441, R_hydratase_like, (R)-hydratase [(R)-specific enoyl-CoA hydratase]
