assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002854065.1_ASM285406v1	CP024147	Escherichia coli strain 14EC033 chromosome, complete genome	1	636222-636355	1	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,PD-DExK	Orphan	TACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	38	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,PD-DExK	NA|77aa|up_6|CP024147.1_628832_629063_+,NA	NA|238aa|up_9|CP024147.1_625405_626119_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_8|CP024147.1_626189_626783_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|151aa|up_7|CP024147.1_626927_627380_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|77aa|up_6|CP024147.1_628832_629063_+	NA	NA|335aa|up_5|CP024147.1_629163_630168_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|CP024147.1_630329_630746_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|CP024147.1_630791_631295_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|CP024147.1_631487_632684_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|CP024147.1_632739_635595_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|CP024147.1_635594_636038_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|CP024147.1_636391_637903_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|CP024147.1_638169_639270_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|CP024147.1_639269_640352_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|CP024147.1_640512_642015_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|333aa|down_4|CP024147.1_642092_643091_-	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|440aa|down_5|CP024147.1_643157_644477_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|255aa|down_6|CP024147.1_644541_645306_-	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|344aa|down_7|CP024147.1_645329_646361_-	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|188aa|down_8|CP024147.1_646577_647141_+	PRK09825, idnK, gluconokinase	NA|340aa|down_9|CP024147.1_647144_648164_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)
GCA_002854065.1_ASM285406v1	CP024147	Escherichia coli strain 14EC033 chromosome, complete genome	2	2708825-2708972	2	CRISPRCasFinder	no	DEDDh	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,PD-DExK	Unclear	TAAGACGCGAACAGCGTCGCATCAGGCACACTGCCAATGTCGGATGCGG	49	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,PD-DExK	NA,NA|22aa|down_2|CP024147.1_2710760_2710826_-	NA|214aa|up_9|CP024147.1_2696661_2697303_-	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional	NA|604aa|up_8|CP024147.1_2697339_2699151_-	PRK09054, PRK09054, phosphogluconate dehydratase; Validated	NA|492aa|up_7|CP024147.1_2699385_2700861_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|290aa|up_6|CP024147.1_2701198_2702068_+	PRK11302, PRK11302, DNA-binding transcriptional regulator HexR; Provisional	NA|481aa|up_5|CP024147.1_2702195_2703638_+	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|324aa|up_4|CP024147.1_2703768_2704740_-	PRK08943, PRK08943, lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated	NA|441aa|up_3|CP024147.1_2704859_2706182_-	PRK11649, PRK11649, putative peptidase; Provisional	NA|311aa|up_2|CP024147.1_2706197_2707130_-	PRK09545, znuA, zinc ABC transporter substrate-binding protein ZnuA	NA|252aa|up_1|CP024147.1_2707208_2707964_+	PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed	NA|262aa|up_0|CP024147.1_2707960_2708746_+	PRK09543, znuB, zinc ABC transporter permease subunit ZnuB	NA|337aa|down_0|CP024147.1_2708991_2710002_-	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB	NA|204aa|down_1|CP024147.1_2710010_2710622_-	PRK00116, ruvA, Holliday junction branch migration protein RuvA	NA|22aa|down_2|CP024147.1_2710760_2710826_-	NA	NA|201aa|down_3|CP024147.1_2710896_2711499_+	PRK11470, PRK11470, YebB family permuted papain-like enzyme	NA|174aa|down_4|CP024147.1_2711500_2712022_-	TIGR00228, Crossover_junction_endodeoxyribonuclease_RuvC, crossover junction endodeoxyribonuclease RuvC	NA|247aa|down_5|CP024147.1_2712056_2712797_-	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator	NA|151aa|down_6|CP024147.1_2712825_2713278_-	PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase; Provisional	NA|591aa|down_7|CP024147.1_2713395_2715168_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|189aa|down_8|CP024147.1_2715477_2716044_+	PRK11440, PRK11440, putative hydrolase; Provisional	NA|273aa|down_9|CP024147.1_2716040_2716859_+	PRK10302, PRK10302, hypothetical protein; Provisional
GCA_002854065.1_ASM285406v1	CP024147	Escherichia coli strain 14EC033 chromosome, complete genome	3	3088431-3088557	3	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,PD-DExK	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,PD-DExK	NA,NA	NA|891aa|up_9|CP024147.1_3061801_3064474_+	PRK10618, PRK10618, phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional	NA|217aa|up_8|CP024147.1_3064490_3065141_+	PRK10840, PRK10840, transcriptional regulator RcsB; Provisional	NA|950aa|up_7|CP024147.1_3065454_3068304_-	PRK10841, PRK10841, two-component system sensor histidine kinase RcsC	NA|259aa|up_6|CP024147.1_3068578_3069355_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_5|CP024147.1_3069359_3071009_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1535aa|up_4|CP024147.1_3071009_3075614_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|563aa|up_3|CP024147.1_3076162_3077851_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_2|CP024147.1_3077999_3080627_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_1|CP024147.1_3080773_3081496_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|762aa|up_0|CP024147.1_3086094_3088380_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|CP024147.1_3088613_3089744_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|CP024147.1_3089743_3089998_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|CP024147.1_3090051_3090702_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|397aa|down_3|CP024147.1_3090782_3091973_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|293aa|down_4|CP024147.1_3092137_3093016_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|360aa|down_5|CP024147.1_3093060_3094140_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_6|CP024147.1_3094144_3095503_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_7|CP024147.1_3095775_3097404_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_8|CP024147.1_3097393_3098653_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_9|CP024147.1_3098649_3099840_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit
GCA_002854065.1_ASM285406v1	CP024153	Escherichia coli strain 14EC033 plasmid p14EC033f, complete sequence	1	53493-53612	1	CRISPRCasFinder	no			Orphan	TGCGTACCCATCCACCTTTCAGTGCGTACCCATCCACCTTTCA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,PD-DExK	NA,NA|63aa|down_3|CP024153.1_56702_56891_-	NA|185aa|up_9|CP024153.1_41240_41795_-	TIGR04431, aminoglycoside-6'-N-acetyltransferase_type_Ib, aminoglycoside N(6')-acetyltransferase, AacA4 family	NA|235aa|up_8|CP024153.1_42831_43536_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|166aa|up_7|CP024153.1_44281_44779_+	cd00209, DHFR, Dihydrofolate reductase (DHFR)	NA|264aa|up_6|CP024153.1_45186_45978_+	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional	NA|131aa|up_5|CP024153.1_46462_46855_+	COG5015, COG5015, Uncharacterized conserved protein [Function unknown]	NA|129aa|up_4|CP024153.1_47174_47561_-	cd08349, BLMA_like, Bleomycin binding protein (BLMA) and similar proteins	NA|479aa|up_3|CP024153.1_48673_50110_+	pfam03917, GSH_synth_ATP, Eukaryotic glutathione synthase, ATP binding domain	NA|335aa|up_2|CP024153.1_50527_51532_+	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|229aa|up_1|CP024153.1_51919_52606_-	pfam01051, Rep_3, Initiator Replication protein	NA|235aa|up_0|CP024153.1_52653_53358_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|84aa|down_0|CP024153.1_54474_54726_+	PRK02854, PRK02854, primosomal protein DnaT	NA|94aa|down_1|CP024153.1_54715_54997_+	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|400aa|down_2|CP024153.1_55493_56693_-	pfam04986, Y2_Tnp, Putative transposase	NA|63aa|down_3|CP024153.1_56702_56891_-	NA	NA|265aa|down_4|CP024153.1_58469_59264_+	cd05150, APH, Aminoglycoside 3'-phosphotransferase	NA|75aa|down_5|CP024153.1_59284_59509_+	cd08350, BLMT_like, BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins	NA|235aa|down_6|CP024153.1_59520_60225_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|160aa|down_7|CP024153.1_60316_60796_+	pfam02082, Rrf2, Transcriptional regulator	NA|1051aa|down_8|CP024153.1_60865_64018_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|392aa|down_9|CP024153.1_64041_65217_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit
