assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002853965.1_ASM285396v1	CP024155	Escherichia coli strain 14EC047 chromosome, complete genome	1	656053-656170	1	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,RT	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,RT	NA,NA|55aa|down_0|CP024155.1_656243_656408_-	NA|115aa|up_9|CP024155.1_643774_644119_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|CP024155.1_644307_645246_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|CP024155.1_645344_646334_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|CP024155.1_646355_647687_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|CP024155.1_647712_648921_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|CP024155.1_648954_651249_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|CP024155.1_651262_651652_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|CP024155.1_651723_653088_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|CP024155.1_653362_654694_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|CP024155.1_654721_656032_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|CP024155.1_656243_656408_-	NA	NA|234aa|down_1|CP024155.1_656430_657132_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|119aa|down_2|CP024155.1_658184_658541_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_3|CP024155.1_658782_659148_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|161aa|down_4|CP024155.1_660497_660980_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_5|CP024155.1_661075_661375_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_6|CP024155.1_661364_661769_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_7|CP024155.1_661771_662077_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]	NA|123aa|down_8|CP024155.1_662114_662483_-	pfam06476, DUF1090, Protein of unknown function (DUF1090)	NA|128aa|down_9|CP024155.1_662629_663013_-	PRK10629, PRK10629, EnvZ/OmpR regulon moderator MzrA
GCA_002853965.1_ASM285396v1	CP024155	Escherichia coli strain 14EC047 chromosome, complete genome	2	1063901-1064294	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,RT	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACC	28,28,28	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	Orphan	cas3,csa3,PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,RT	NA|47aa|up_1|CP024155.1_1062610_1062751_-,NA	NA|434aa|up_9|CP024155.1_1053307_1054609_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|CP024155.1_1054656_1056891_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|CP024155.1_1056968_1057217_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|CP024155.1_1057216_1057552_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|CP024155.1_1057622_1058414_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|CP024155.1_1058641_1060279_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|CP024155.1_1060366_1061665_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|CP024155.1_1061724_1062597_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|CP024155.1_1062610_1062751_-	NA	NA|224aa|up_0|CP024155.1_1062889_1063561_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|CP024155.1_1064933_1066412_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|CP024155.1_1066438_1067716_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|CP024155.1_1068033_1068819_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|CP024155.1_1068888_1070343_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|CP024155.1_1070436_1071774_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|CP024155.1_1071751_1072531_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|CP024155.1_1072527_1073388_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|CP024155.1_1073535_1074111_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|CP024155.1_1074127_1074388_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|CP024155.1_1074378_1075650_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCA_002853965.1_ASM285396v1	CP024155	Escherichia coli strain 14EC047 chromosome, complete genome	3	1089840-1090659	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,RT	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCGN	29,29,30	0	0	NA	NA	I-E:I-E:I-E	8,13,13	13	TypeI-E	cas3,csa3,PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,RT	NA,NA	NA|122aa|up_9|CP024155.1_1075727_1076093_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_8|CP024155.1_1076408_1078208_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_7|CP024155.1_1078207_1079920_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_6|CP024155.1_1079993_1080728_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cse2gr11|161aa|up_5|CP024155.1_1085665_1086148_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|CP024155.1_1086160_1087252_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|CP024155.1_1087254_1087929_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|CP024155.1_1087915_1088515_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|CP024155.1_1088530_1089448_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|CP024155.1_1089449_1089734_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|CP024155.1_1090679_1091717_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP024155.1_1091968_1092877_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|CP024155.1_1092878_1094306_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP024155.1_1094305_1094911_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|CP024155.1_1094960_1095284_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP024155.1_1095477_1095789_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP024155.1_1095807_1096518_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP024155.1_1096517_1096997_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP024155.1_1096993_1098043_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP024155.1_1098023_1098785_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_002853965.1_ASM285396v1	CP024155	Escherichia coli strain 14EC047 chromosome, complete genome	4	2607354-2607463	4	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,RT	Orphan	AGGAATTAAGGAAGTAAATATAAAGAG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,RT	NA|330aa|up_5|CP024155.1_2603416_2604406_-,NA|75aa|up_3|CP024155.1_2605186_2605411_-,NA|167aa|up_2|CP024155.1_2605417_2605918_-,NA|172aa|up_1|CP024155.1_2605907_2606423_-,NA|123aa|up_0|CP024155.1_2606852_2607221_-,NA	NA|187aa|up_9|CP024155.1_2599542_2600103_+	PRK15130, PRK15130, spermidine N1-acetyltransferase; Provisional	NA|237aa|up_8|CP024155.1_2600105_2600816_-	PRK02939, PRK02939, YnfC family lipoprotein	NA|102aa|up_7|CP024155.1_2600923_2601229_+	pfam06649, DUF1161, Protein of unknown function (DUF1161)	NA|493aa|up_6|CP024155.1_2601427_2602906_+	TIGR02166, Putative_dimethyl_sulfoxide_reductase_chain_YnfE, anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family	NA|330aa|up_5|CP024155.1_2603416_2604406_-	NA	NA|164aa|up_4|CP024155.1_2604489_2604981_-	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	NA|75aa|up_3|CP024155.1_2605186_2605411_-	NA	NA|167aa|up_2|CP024155.1_2605417_2605918_-	NA	NA|172aa|up_1|CP024155.1_2605907_2606423_-	NA	NA|123aa|up_0|CP024155.1_2606852_2607221_-	NA	NA|370aa|down_0|CP024155.1_2609278_2610388_+	TIGR02166, Putative_dimethyl_sulfoxide_reductase_chain_YnfE, anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family	NA|808aa|down_1|CP024155.1_2610448_2612872_+	TIGR02166, Putative_dimethyl_sulfoxide_reductase_chain_YnfE, anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family	NA|206aa|down_2|CP024155.1_2612882_2613500_+	TIGR02951, anaerobic_dimethyl_sulfoxide_reductase_subunit_B, DMSO reductase, iron-sulfur subunit	NA|285aa|down_3|CP024155.1_2613501_2614356_+	pfam04976, DmsC, DMSO reductase anchor subunit (DmsC)	NA|205aa|down_4|CP024155.1_2614398_2615013_+	PRK11621, PRK11621, Tat proofreading chaperone DmsD	NA|431aa|down_5|CP024155.1_2615172_2616465_+	PRK01610, PRK01610, putative voltage-gated ClC-type chloride channel ClcB; Provisional	NA|232aa|down_6|CP024155.1_2616417_2617113_-	PRK12374, PRK12374, ATP-dependent dethiobiotin synthetase BioD	NA|407aa|down_7|CP024155.1_2617237_2618458_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|298aa|down_8|CP024155.1_2618592_2619486_-	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold	NA|418aa|down_9|CP024155.1_2619592_2620846_+	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily
GCA_002853965.1_ASM285396v1	CP024155	Escherichia coli strain 14EC047 chromosome, complete genome	6	4228667-4228799	3	PILER-CR	no		cas3,csa3,PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,RT	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,RT	NA,NA|73aa|down_7|CP024155.1_4236715_4236934_+	NA|126aa|up_9|CP024155.1_4219370_4219748_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|CP024155.1_4219754_4220597_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|CP024155.1_4220674_4221154_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|CP024155.1_4221345_4223208_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|CP024155.1_4223200_4223731_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|CP024155.1_4223838_4225170_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|CP024155.1_4225228_4225516_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|CP024155.1_4225512_4226799_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|CP024155.1_4226849_4227791_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|CP024155.1_4227805_4228576_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|CP024155.1_4229049_4230564_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|CP024155.1_4230594_4231737_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|CP024155.1_4231865_4233083_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|CP024155.1_4233156_4234710_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|CP024155.1_4234818_4235604_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|CP024155.1_4235609_4236200_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|CP024155.1_4236285_4236681_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|73aa|down_7|CP024155.1_4236715_4236934_+	NA	NA|1074aa|down_8|CP024155.1_4236941_4240163_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_9|CP024155.1_4240180_4241329_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit
