The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP020714	Staphylococcus aureus strain K18 chromosome, complete genome	2731897	143077	184793	2731897	tRNA,head,terminase,portal,integrase,tail	Staphylococcus_phage(45.71%)	53	163234:163271	197964:198001
AUJ55942.1|143077_144622_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AUJ55943.1|144622_144988_+	hypothetical protein	NA	NA	NA	NA	NA
AUJ55944.1|145014_145506_+	energy coupling factor transporter S component ThiW	NA	NA	NA	NA	NA
AUJ55945.1|145808_148427_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.7	8.5e-41
AUJ55946.1|148439_150449_+	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.7	2.8e-60
AUJ55947.1|150454_150997_+	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
AUJ55948.1|151471_152290_+	aquaporin	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	2.4e-26
AUJ55949.1|152418_153915_+	glycerol kinase	NA	NA	NA	NA	NA
AUJ55950.1|154072_155746_+	aerobic glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AUJ55951.1|155895_156810_+	lysophospholipase	NA	NA	NA	NA	NA
AUJ55952.1|156827_157763_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AUJ55953.1|157777_158011_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AUJ55954.1|158232_158709_-	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	38.0	1.2e-22
AUJ55955.1|158820_160059_+	GTPase HflX	NA	NA	NA	NA	NA
AUJ55956.1|160077_161316_+	hypothetical protein	NA	NA	NA	NA	NA
AUJ55957.1|161558_161927_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AUJ55958.1|161945_163286_+	glutamine synthetase	NA	NA	NA	NA	NA
163234:163271	attL	ACAGAACTCAAGTATCTGAATGGGAAAGAGATCAGTAC	NA	NA	NA	NA
AUJ58404.1|163425_164142_-|integrase	site-specific integrase	integrase	A0A0C5AN64	Paenibacillus_phage	34.7	4.1e-22
AUJ55959.1|164604_165300_-	hypothetical protein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	50.3	3.6e-07
AUJ55960.1|165311_165695_-	hypothetical protein	NA	NA	NA	NA	NA
AUJ55961.1|165841_166234_-	transcriptional regulator	NA	A0A2I6PE55	Staphylococcus_phage	53.6	1.6e-28
AUJ55962.1|166401_166620_+	DUF739 domain-containing protein	NA	A0A2I6PE94	Staphylococcus_phage	62.5	4.9e-19
AUJ55963.1|166646_166922_+	hypothetical protein	NA	NA	NA	NA	NA
AUJ55964.1|167345_167552_-	hypothetical protein	NA	A1BTY8	Staphylococcus_virus	75.0	3.3e-25
AUJ55965.1|167612_168296_+	phage repressor protein	NA	A9CR56	Staphylococcus_phage	85.2	2.0e-106
AUJ55966.1|168394_168556_+	DUF1270 domain-containing protein	NA	R4IH12	Staphylococcus_phage	69.8	1.1e-12
AUJ55967.1|168642_168960_+	hypothetical protein	NA	W5RAK4	Staphylococcus_phage	80.6	1.6e-39
AUJ55968.1|168949_169216_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	53.6	3.0e-18
AUJ55969.1|169220_169757_+	hypothetical protein	NA	A0A0H3U480	Staphylococcus_phage	82.5	1.7e-76
AUJ55970.1|169757_170537_+	chromosomal replication initiator DnaA	NA	A0A1W6JPW0	Staphylococcus_phage	88.0	2.3e-127
AUJ58405.1|170617_171112_+	single-stranded DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	94.0	6.4e-83
AUJ55971.1|172026_172317_+	hypothetical protein	NA	A0A223LIA9	Staphylococcus_phage	58.1	7.2e-18
AUJ55972.1|172331_172490_+	hypothetical protein	NA	A0A0E3T9L7	Staphylococcus_phage	90.4	6.7e-18
AUJ55973.1|172495_172807_+	hypothetical protein	NA	NA	NA	NA	NA
AUJ55974.1|172799_173330_+	nucleotide pyrophosphohydrolase	NA	A0A1P8VVP1	Streptococcus_phage	39.1	2.3e-22
AUJ55975.1|173564_174029_+	hypothetical protein	NA	C9E2P0	Enterococcus_phage	42.4	6.1e-19
AUJ55976.1|174029_174263_+	hypothetical protein	NA	NA	NA	NA	NA
AUJ55977.1|174305_174794_+	RNA polymerase subunit sigma-70	NA	R9TMH4	Paenibacillus_phage	28.3	8.7e-08
AUJ55978.1|174946_175375_+	HNH endonuclease	NA	A1EAE0	Streptococcus_phage	45.1	1.1e-25
AUJ55979.1|175361_176636_+|terminase	terminase	terminase	Q4ZE37	Staphylococcus_virus	76.2	3.2e-195
AUJ55980.1|176648_178097_+|portal	phage portal protein	portal	Q4ZE36	Staphylococcus_virus	69.4	3.7e-195
AUJ55981.1|178086_178605_+	hypothetical protein	NA	A0A1J0MFV1	Staphylococcus_phage	55.3	4.7e-44
AUJ55982.1|178626_179616_+|head	head morphogenesis protein	head	Q4ZE35	Staphylococcus_virus	68.9	3.8e-50
AUJ55983.1|179815_179944_+	hypothetical protein	NA	NA	NA	NA	NA
AUJ55984.1|179910_180489_+	hypothetical protein	NA	Q4ZE34	Staphylococcus_virus	50.8	1.9e-09
AUJ55985.1|181495_181969_+	hypothetical protein	NA	A0A2H4J9T3	uncultured_Caudovirales_phage	31.6	9.7e-12
AUJ55986.1|181984_182311_+|head,tail	phage head-tail adapter protein	head,tail	Q4ZE31	Staphylococcus_virus	56.4	2.1e-26
AUJ55987.1|182310_182616_+	hypothetical protein	NA	Q4ZE30	Staphylococcus_virus	40.6	6.4e-17
AUJ55988.1|182616_182967_+	hypothetical protein	NA	H9A0N6	Staphylococcus_phage	60.0	9.3e-36
AUJ55989.1|182976_183372_+	hypothetical protein	NA	H9A0N7	Staphylococcus_phage	42.3	1.9e-21
AUJ55990.1|183383_183983_+|tail	phage major tail protein, TP901-1 family	tail	H9A0N8	Staphylococcus_phage	47.5	7.4e-17
AUJ55991.1|184044_184389_+|tail	phage tail protein	tail	A0A1J0MFH0	Staphylococcus_phage	58.9	2.9e-34
AUJ58406.1|184439_184793_+	hypothetical protein	NA	Q4ZE25	Staphylococcus_virus	72.3	1.7e-37
197964:198001	attR	ACAGAACTCAAGTATCTGAATGGGAAAGAGATCAGTAC	NA	NA	NA	NA
>prophage 2
CP020714	Staphylococcus aureus strain K18 chromosome, complete genome	2731897	188932	199370	2731897	protease,holin,head	Staphylococcus_phage(75.0%)	8	NA	NA
AUJ55993.1|188932_190618_+	hypothetical protein	NA	Q4ZE19	Staphylococcus_virus	46.5	1.4e-108
AUJ55994.1|190635_191649_+	SGNH/GDSL hydrolase family protein	NA	A0A1J0MFI8	Staphylococcus_phage	52.6	6.5e-98
AUJ55995.1|193076_193466_+|holin	holin	holin	A0A1S6L1J2	Staphylococcus_phage	38.2	6.9e-16
AUJ55996.1|193530_194436_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6JQL2	Staphylococcus_phage	50.4	1.0e-65
AUJ55997.1|194905_195103_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	48.4	3.7e-10
AUJ58407.1|195323_196259_+|protease	CAAX protease	protease	A0A059NT88	Lactococcus_phage	44.0	5.3e-70
AUJ55998.1|197550_197775_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	75.4	1.6e-20
AUJ55999.1|198029_199370_+|head	phage head morphogenesis protein	head	A0A1J0MF61	Staphylococcus_phage	58.7	5.3e-140
>prophage 3
CP020714	Staphylococcus aureus strain K18 chromosome, complete genome	2731897	471476	479806	2731897	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
AUJ56240.1|471476_472262_-	zinc ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	1.0e-18
AUJ56241.1|472387_473278_-	endonuclease	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.4e-26
AUJ56242.1|473287_474634_-	DEAD/DEAH box family ATP-dependent RNA helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
AUJ56243.1|474747_475848_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
AUJ56244.1|475850_476528_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
AUJ56245.1|476658_477765_-	RNA polymerase sigma factor SigA	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
AUJ56246.1|477988_479806_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.6e-54
>prophage 4
CP020714	Staphylococcus aureus strain K18 chromosome, complete genome	2731897	751085	759540	2731897		Synechococcus_phage(33.33%)	9	NA	NA
AUJ56516.1|751085_751652_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
AUJ56517.1|751654_752683_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
AUJ56518.1|752675_754160_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
AUJ56519.1|754138_756328_-	phosphoribosylformylglycinamidine synthase II	NA	A6N228	Microbacterium_phage	39.7	1.3e-140
AUJ56520.1|756320_756992_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
AUJ56521.1|756993_757257_-	phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA	NA
AUJ56522.1|757256_757961_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
AUJ56523.1|757964_759089_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AUJ58424.1|759075_759540_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	43.8	1.5e-20
>prophage 5
CP020714	Staphylococcus aureus strain K18 chromosome, complete genome	2731897	1575094	1584137	2731897	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
AUJ57288.1|1575094_1576099_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
AUJ57289.1|1576100_1577126_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AUJ57290.1|1577148_1578288_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
AUJ57291.1|1578306_1578567_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
AUJ57292.1|1578841_1581121_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	36.6	1.4e-31
AUJ57293.1|1581323_1583597_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.1	1.1e-63
AUJ57294.1|1583618_1584137_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 6
CP020714	Staphylococcus aureus strain K18 chromosome, complete genome	2731897	1656488	1690991	2731897	protease	Staphylococcus_phage(90.62%)	41	NA	NA
AUJ57361.1|1656488_1657241_-	hypothetical protein	NA	A0A097PAT7	Streptococcus_pyogenes_phage	47.2	4.4e-51
AUJ57362.1|1657267_1658038_-	exotoxin	NA	A0EX09	Staphylococcus_phage	33.5	4.3e-25
AUJ57363.1|1658037_1658664_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	93.8	3.9e-93
AUJ57364.1|1658737_1659733_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	4.2e-73
AUJ57365.1|1659813_1660464_-	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	99.1	3.0e-56
AUJ58462.1|1660766_1661222_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	1.2e-78
AUJ57366.1|1661380_1662859_+	2-succinylbenzoate-CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	100.0	1.5e-289
AUJ57367.1|1662863_1663865_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	98.2	9.7e-187
AUJ57368.1|1663861_1664119_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	98.8	3.6e-45
AUJ57369.1|1664184_1664658_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
AUJ58463.1|1664662_1665409_+	dipeptidyl aminopeptidase	NA	A0A2H4PQM6	Staphylococcus_phage	99.2	2.2e-143
AUJ57370.1|1665786_1667379_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
AUJ57371.1|1667750_1668944_+	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
AUJ57372.1|1669068_1669977_+	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
AUJ57373.1|1670188_1671022_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
AUJ57374.1|1671033_1671213_-	hypothetical protein	NA	NA	NA	NA	NA
AUJ57375.1|1671404_1671758_-	camphor resistance protein CrcB	NA	A0A2H4PQQ7	Staphylococcus_phage	100.0	2.6e-22
AUJ57376.1|1671754_1672120_-	camphor resistance protein CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
AUJ57377.1|1672375_1672678_-	hypothetical protein	NA	NA	NA	NA	NA
AUJ57378.1|1672937_1673651_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
AUJ57379.1|1674090_1674726_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AUJ57380.1|1675021_1675465_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
AUJ57381.1|1675451_1675895_-	competence protein ComK	NA	NA	NA	NA	NA
AUJ57382.1|1676007_1676478_-	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
AUJ57383.1|1676676_1676901_+	hypothetical protein	NA	NA	NA	NA	NA
AUJ57384.1|1677176_1678031_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
AUJ57385.1|1678325_1678721_-	protein ArsC	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
AUJ57386.1|1678738_1680031_-	arsenical efflux pump membrane protein ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
AUJ57387.1|1680030_1680345_-	transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
AUJ57388.1|1680867_1682370_+	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
AUJ58464.1|1682862_1683894_+	riboflavin biosynthesis protein RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	2.0e-195
AUJ57389.1|1683900_1684533_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	100.0	3.4e-113
AUJ57390.1|1684543_1685725_+	riboflavin biosynthesis protein RibBA	NA	A0A2H4PQS2	Staphylococcus_phage	100.0	1.7e-227
AUJ57391.1|1685737_1686202_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
AUJ57392.1|1686323_1687325_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	100.0	3.1e-185
AUJ58465.1|1687233_1687425_+	hypothetical protein	NA	NA	NA	NA	NA
AUJ57393.1|1687436_1687556_+	hypothetical protein	NA	NA	NA	NA	NA
AUJ57394.1|1687558_1688386_+	lysophospholipase	NA	NA	NA	NA	NA
AUJ57395.1|1688956_1689358_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUJ57396.1|1689477_1690041_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
AUJ57397.1|1690037_1690991_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
>prophage 7
CP020714	Staphylococcus aureus strain K18 chromosome, complete genome	2731897	1984079	2050223	2731897	head,terminase,capsid,protease,portal,integrase,tail,holin	Staphylococcus_phage(82.05%)	93	1974810:1974830	2050503:2050523
1974810:1974830	attL	TATGTTGGGGCCCCGCCAACT	NA	NA	NA	NA
AUJ57643.1|1984079_1984667_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	55.3	8.2e-53
AUJ57644.1|1984909_1985812_-	TIGR01777 family protein	NA	NA	NA	NA	NA
AUJ57645.1|1986514_1987144_+	DUF4887 domain-containing protein	NA	NA	NA	NA	NA
AUJ57646.1|1987314_1987437_+	hypothetical protein	NA	NA	NA	NA	NA
AUJ57647.1|1987847_1988861_+	hypothetical protein	NA	NA	NA	NA	NA
AUJ57648.1|1988913_1989924_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AUJ57649.1|1990062_1991253_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AUJ57650.1|1991374_1992136_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
AUJ57651.1|1992138_1993656_+	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA	NA
AUJ57652.1|1993785_1995090_+	enolase	NA	W6LP63	Streptococcus_phage	80.7	6.7e-196
AUJ57653.1|1995428_1995887_+	hypothetical protein	NA	NA	NA	NA	NA
AUJ57654.1|1995953_1996187_+	protein-export membrane protein SecG	NA	NA	NA	NA	NA
AUJ57655.1|1996302_1997043_+	carboxylesterase	NA	NA	NA	NA	NA
AUJ57656.1|1997076_1999449_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.0	1.3e-93
AUJ57657.1|1999470_1999935_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	100.0	1.5e-81
AUJ57658.1|2000446_2001496_-|integrase	site-specific integrase	integrase	W5R968	Staphylococcus_phage	99.1	7.0e-196
AUJ57659.1|2001557_2002061_-	hypothetical protein	NA	A0A059T7N4	Staphylococcus_phage	98.8	1.5e-47
AUJ57660.1|2002064_2002556_-	hypothetical protein	NA	M9NSS1	Staphylococcus_phage	98.2	3.7e-83
AUJ57661.1|2002576_2003038_-	toxin	NA	A0A2H4IYT4	uncultured_Caudovirales_phage	58.9	4.9e-45
AUJ57662.1|2003053_2003368_-	transcriptional regulator	NA	A0A1W6JP51	Staphylococcus_phage	72.1	6.4e-36
AUJ57663.1|2003534_2003780_+	transcriptional regulator	NA	I6T7P7	Staphylococcus_virus	77.8	1.3e-28
AUJ58482.1|2003949_2004243_-	hypothetical protein	NA	Q4ZB03	Staphylococcus_virus	97.6	1.5e-39
AUJ57664.1|2004250_2004952_+	phage repressor protein	NA	W5R8M8	Staphylococcus_phage	98.7	5.1e-126
AUJ57665.1|2004976_2005186_+	hypothetical protein	NA	A0A2H4PQR1	Staphylococcus_phage	100.0	9.7e-33
AUJ57666.1|2005199_2005361_+	DUF1270 domain-containing protein	NA	C7F7L3	Staphylococcus_phage	100.0	1.9e-20
AUJ57667.1|2005453_2005756_+	hypothetical protein	NA	A0A0F6N3N3	Staphylococcus_phage	99.0	1.2e-47
AUJ57668.1|2005760_2006021_+	hypothetical protein	NA	A0A068A219	Staphylococcus_phage	100.0	8.9e-44
AUJ57669.1|2006030_2006252_+	hypothetical protein	NA	B2ZYV2	Staphylococcus_phage	100.0	3.2e-34
AUJ57670.1|2006244_2007033_+	chromosomal replication initiator DnaA	NA	Q4ZBM5	Staphylococcus_phage	100.0	2.6e-142
AUJ57671.1|2007061_2007613_+	single-stranded DNA-binding protein	NA	Q4ZBM4	Staphylococcus_phage	100.0	3.4e-101
AUJ57672.1|2007625_2008318_+	hypothetical protein	NA	Q4ZAZ0	Staphylococcus_virus	98.3	2.0e-130
AUJ57673.1|2008289_2009093_+	replication protein	NA	A0A2H4JCF5	uncultured_Caudovirales_phage	100.0	1.1e-121
AUJ57674.1|2009102_2009876_+	DNA replication protein DnaC	NA	A0A2I6PDA0	Staphylococcus_phage	99.6	2.7e-144
AUJ57675.1|2009869_2010028_+	hypothetical protein	NA	A0A2I6PDX0	Staphylococcus_phage	96.2	5.8e-22
AUJ57676.1|2010040_2010262_+	hypothetical protein	NA	A0A0H3U2V4	Staphylococcus_phage	100.0	2.2e-35
AUJ57677.1|2010272_2010677_+	hypothetical protein	NA	A7TWN5	Staphylococcus_phage	100.0	7.1e-72
AUJ57678.1|2010681_2010867_+	hypothetical protein	NA	A0A1X9H0T9	Staphylococcus_phage	95.1	6.0e-26
AUJ57679.1|2010867_2011485_+	hypothetical protein	NA	A0A0H3U4U9	Staphylococcus_phage	99.5	1.2e-83
AUJ57680.1|2011484_2011739_+	hypothetical protein	NA	A0A2K9VBW1	Staphylococcus_phage	100.0	1.6e-42
AUJ57681.1|2011738_2011987_+	hypothetical protein	NA	A0A2I6PDB4	Staphylococcus_phage	100.0	2.1e-42
AUJ57682.1|2012001_2012208_+	hypothetical protein	NA	A0A2I6PDB7	Staphylococcus_phage	100.0	1.3e-34
AUJ57683.1|2012210_2012615_+	hypothetical protein	NA	A0A0E3T8H9	Staphylococcus_phage	98.5	6.0e-71
AUJ57684.1|2012611_2012806_+	hypothetical protein	NA	A0A0E3XCV8	Staphylococcus_phage	100.0	2.5e-27
AUJ57685.1|2012802_2013174_+	hypothetical protein	NA	I1W606	Staphylococcus_phage	100.0	1.6e-65
AUJ57686.1|2013170_2013560_+	acetyltransferase	NA	I1W604	Staphylococcus_phage	100.0	1.4e-69
AUJ57687.1|2013552_2013807_+	hypothetical protein	NA	A7TWH5	Staphylococcus_phage	92.9	6.1e-37
AUJ57688.1|2013769_2013964_+	hypothetical protein	NA	M1SVE4	Staphylococcus_phage	93.4	1.3e-23
AUJ57689.1|2013956_2014469_+	dUTP pyrophosphatase	NA	Q4ZDG4	Staphylococcus_virus	98.8	2.8e-89
AUJ57690.1|2014505_2014793_+	DUF1381 domain-containing protein	NA	Q4ZAB6	Staphylococcus_virus	96.8	4.4e-44
AUJ57691.1|2014785_2015022_+	hypothetical protein	NA	A0A2I6PEM4	Staphylococcus_phage	94.9	2.0e-34
AUJ57692.1|2015005_2015401_+	hypothetical protein	NA	M9QX07	Staphylococcus_phage	94.7	1.3e-62
AUJ57693.1|2015397_2015571_+	transcriptional regulator	NA	A0A0H3U4U1	Staphylococcus_phage	96.5	1.9e-21
AUJ57694.1|2015571_2015718_+	hypothetical protein	NA	B2ZYX7	Staphylococcus_phage	97.9	3.7e-15
AUJ57695.1|2015741_2016164_+	transcriptional regulator	NA	A0A0F6N3E5	Staphylococcus_phage	99.3	2.7e-74
AUJ57696.1|2016494_2016989_+|terminase	terminase	terminase	A0A059T7P8	Staphylococcus_phage	99.4	1.1e-74
AUJ57697.1|2016981_2018205_+|terminase	terminase	terminase	A0A0N9BAX9	Staphylococcus_phage	100.0	7.5e-242
AUJ57698.1|2018201_2019626_+|portal	phage portal protein	portal	A0A0E3T9I6	Staphylococcus_phage	100.0	4.8e-272
AUJ57699.1|2019594_2020545_+|head	phage head morphogenesis protein	head	M9NST7	Staphylococcus_phage	100.0	2.3e-177
AUJ57700.1|2020548_2020782_+	hypothetical protein	NA	M9NUJ2	Staphylococcus_phage	100.0	2.5e-37
AUJ57701.1|2020885_2021470_+	hypothetical protein	NA	M9NRJ1	Staphylococcus_phage	99.5	9.9e-75
AUJ57702.1|2021486_2022401_+|capsid	major capsid protein	capsid	A0A059T7K3	Staphylococcus_phage	99.3	1.3e-169
AUJ58483.1|2022561_2022912_+|head,tail	phage head-tail adapter protein	head,tail	A0A0H3U2R5	Staphylococcus_phage	99.1	3.2e-60
AUJ57703.1|2022923_2023259_+|head,tail	phage head-tail adapter protein	head,tail	M9NUJ3	Staphylococcus_phage	98.2	1.3e-58
AUJ57704.1|2023245_2023659_+	hypothetical protein	NA	A0A0N9BAY5	Staphylococcus_phage	98.5	2.0e-74
AUJ57705.1|2023671_2024097_+	hypothetical protein	NA	Q4ZBQ9	Staphylococcus_phage	98.6	2.3e-73
AUJ57706.1|2024097_2024655_+|tail	phage tail protein	tail	A0A059T675	Staphylococcus_phage	100.0	4.1e-102
AUJ57707.1|2024721_2025234_+	hypothetical protein	NA	A0A059T5B1	Staphylococcus_phage	99.4	1.2e-92
AUJ57708.1|2025278_2025563_+	hypothetical protein	NA	A0A059T626	Staphylococcus_phage	96.8	9.8e-44
AUJ57709.1|2025566_2028452_+|terminase	terminase	terminase	M9NRJ5	Staphylococcus_phage	92.2	2.3e-310
AUJ57710.1|2028466_2029408_+|tail	phage tail protein	tail	A0A059T7K5	Staphylococcus_phage	98.1	4.5e-178
AUJ57711.1|2029418_2031305_+	peptidase	NA	A0A059T677	Staphylococcus_phage	97.8	0.0e+00
AUJ57712.1|2031317_2033216_+	hypothetical protein	NA	A0A0H3U448	Staphylococcus_phage	95.1	0.0e+00
AUJ57713.1|2033215_2035039_+	hypothetical protein	NA	B1H3M3	Staphylococcus_phage	99.8	0.0e+00
AUJ57714.1|2035038_2035416_+	hypothetical protein	NA	Q8LTH7	Staphylococcus_phage	100.0	7.3e-55
AUJ58484.1|2035419_2035593_+	XkdX family protein	NA	A0A059T7K6	Staphylococcus_phage	100.0	1.3e-27
AUJ57715.1|2035633_2035933_+	hypothetical protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
AUJ57716.1|2036069_2037944_+	CHAP domain-containing protein	NA	Q4ZBP7	Staphylococcus_phage	97.8	0.0e+00
AUJ57717.1|2037956_2040551_+|tail	phage tail protein	tail	Q4ZC48	Staphylococcus_virus	57.0	1.1e-271
AUJ57718.1|2040606_2041044_+|holin	phage holin	holin	A7YGY0	Staphylococcus_virus	97.2	2.2e-71
AUJ57719.1|2041024_2042470_+	autolysin	NA	Q08JW9	Staphylococcus_phage	97.7	5.7e-289
AUJ57720.1|2042868_2043024_+	hypothetical protein	NA	NA	NA	NA	NA
AUJ57721.1|2042998_2043205_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	98.5	9.9e-30
AUJ57722.1|2043218_2043419_+	hypothetical protein	NA	A0A2H4PQS9	Staphylococcus_phage	100.0	3.5e-32
AUJ57723.1|2043708_2044815_-|integrase	site-specific integrase	integrase	A0A1B2AQ00	Phage_Wrath	43.0	1.2e-76
AUJ57724.1|2044804_2045608_-	transcriptional regulator	NA	A0A2H4JC02	uncultured_Caudovirales_phage	55.9	5.3e-10
AUJ57725.1|2045743_2045947_+	transcriptional regulator	NA	NA	NA	NA	NA
AUJ57726.1|2045982_2046201_+	transcriptional regulator	NA	NA	NA	NA	NA
AUJ57727.1|2046212_2046368_+	pathogenicity island protein	NA	NA	NA	NA	NA
AUJ57728.1|2046351_2046657_+	pathogenicity island protein	NA	Q4ZE75	Staphylococcus_phage	88.1	3.1e-43
AUJ57729.1|2046731_2048342_+	phage resistance protein	NA	A0A1W6JPF4	Staphylococcus_phage	77.6	4.0e-243
AUJ57730.1|2048517_2049321_+	DNA primase	NA	Q4ZE69	Staphylococcus_phage	96.3	1.3e-149
AUJ57731.1|2049307_2049580_+	pathogenicity island protein	NA	Q4ZE68	Staphylococcus_phage	92.2	2.0e-41
AUJ57732.1|2049581_2050223_+	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	93.0	4.2e-111
2050503:2050523	attR	AGTTGGCGGGGCCCCAACATA	NA	NA	NA	NA
>prophage 8
CP020714	Staphylococcus aureus strain K18 chromosome, complete genome	2731897	2355625	2367934	2731897		uncultured_Caudovirales_phage(37.5%)	17	NA	NA
AUJ58491.1|2355625_2356039_+	hypothetical protein	NA	A0A1Q1PVU5	Staphylococcus_phage	39.1	5.1e-17
AUJ58492.1|2356269_2356350_-	hypothetical protein	NA	NA	NA	NA	NA
AUJ58053.1|2356402_2356507_-	hypothetical protein	NA	NA	NA	NA	NA
AUJ58054.1|2356639_2357611_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
AUJ58055.1|2357728_2359834_-	ribonucleotide-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
AUJ58056.1|2359796_2360195_-	protein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
AUJ58057.1|2360344_2360611_-	ribonucleoside-diphosphate reductase	NA	NA	NA	NA	NA
AUJ58058.1|2360995_2361862_+	EamA family transporter	NA	NA	NA	NA	NA
AUJ58059.1|2361881_2362382_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
AUJ58060.1|2362411_2362657_+	hypothetical protein	NA	NA	NA	NA	NA
AUJ58061.1|2362722_2364228_+	MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
AUJ58062.1|2364305_2364407_-	hypothetical protein	NA	NA	NA	NA	NA
AUJ58063.1|2364497_2365415_+	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
AUJ58064.1|2365848_2365941_+	hypothetical protein	NA	NA	NA	NA	NA
AUJ58065.1|2366038_2366581_-	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
AUJ58066.1|2366728_2366854_-	hypothetical protein	NA	NA	NA	NA	NA
AUJ58067.1|2366875_2367934_-	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	27.3	1.1e-20
>prophage 9
CP020714	Staphylococcus aureus strain K18 chromosome, complete genome	2731897	2379906	2387725	2731897		Pandoravirus(16.67%)	10	NA	NA
AUJ58077.1|2379906_2381058_-	aminodeoxychorismate synthase component I	NA	S4VNU7	Pandoravirus	36.1	1.2e-23
AUJ58078.1|2381041_2381635_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
AUJ58079.1|2381985_2382654_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
AUJ58080.1|2382655_2383075_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
AUJ58081.1|2383078_2383792_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
AUJ58082.1|2383890_2384475_+	hypothetical protein	NA	NA	NA	NA	NA
AUJ58083.1|2384754_2385195_+	hypothetical protein	NA	NA	NA	NA	NA
AUJ58084.1|2385535_2386009_+	DoxX family protein	NA	NA	NA	NA	NA
AUJ58085.1|2385983_2386670_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AUJ58086.1|2386669_2387725_+	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.5	1.6e-14
>prophage 10
CP020714	Staphylococcus aureus strain K18 chromosome, complete genome	2731897	2514429	2525788	2731897	integrase	Staphylococcus_phage(61.54%)	15	2516160:2516185	2528911:2528936
AUJ58208.1|2514429_2515782_-	carboxylesterase	NA	A0A0B5J865	Pandoravirus	34.2	2.5e-12
AUJ58497.1|2516071_2516254_+	DUF3125 domain-containing protein	NA	NA	NA	NA	NA
2516160:2516185	attL	CACCCCAACTTGCATTGTCTGTAGAA	NA	NA	NA	NA
AUJ58209.1|2516503_2517145_-	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	92.0	1.4e-109
AUJ58210.1|2517141_2517522_-	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	96.0	3.2e-66
AUJ58211.1|2517851_2519552_-	hypothetical protein	NA	Q4ZE73	Staphylococcus_phage	95.2	1.3e-308
AUJ58212.1|2519565_2520435_-	mobile element-associated protein	NA	Q4ZE74	Staphylococcus_phage	96.2	1.5e-164
AUJ58213.1|2520501_2520822_-	pathogenicity island protein	NA	A0A1W6JQH0	Staphylococcus_phage	58.2	6.5e-20
AUJ58214.1|2520824_2521034_-	pathogenicity island protein	NA	Q4ZE76	Staphylococcus_phage	94.2	1.7e-29
AUJ58215.1|2521026_2521173_-	pathogenicity island protein	NA	NA	NA	NA	NA
AUJ58216.1|2521169_2521487_-	excisionase	NA	A0A1W6JQE0	Staphylococcus_phage	97.1	1.6e-50
AUJ58217.1|2521491_2521710_-	transcriptional regulator	NA	A0A2H4JB11	uncultured_Caudovirales_phage	66.7	1.3e-19
AUJ58218.1|2521882_2522557_+	transcriptional regulator	NA	A0A2H4JGT9	uncultured_Caudovirales_phage	45.8	1.6e-39
AUJ58219.1|2522570_2523743_+|integrase	site-specific integrase	integrase	A0A1W6JQD3	Staphylococcus_phage	97.9	1.3e-219
AUJ58220.1|2523811_2525428_-	molecular chaperone GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
AUJ58221.1|2525503_2525788_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
2528911:2528936	attR	CACCCCAACTTGCATTGTCTGTAGAA	NA	NA	NA	NA
