assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002850315.1_ASM285031v1	CP013943	Staphylococcus epidermidis strain DAR1907 chromosome, complete genome	1	331967-332057	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CAACATAGAGAATTTCACCGAGAAATTCAACA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|62aa|down_2|CP013943.1_334173_334359_+,NA|99aa|down_9|CP013943.1_339674_339971_+	NA|254aa|up_9|CP013943.1_320627_321389_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|630aa|up_8|CP013943.1_321378_323268_+	pfam02687, FtsX, FtsX-like permease family	NA|206aa|up_7|CP013943.1_323789_324407_+	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]	NA|337aa|up_6|CP013943.1_324421_325432_+	pfam01384, PHO4, Phosphate transporter family	NA|267aa|up_5|CP013943.1_325624_326425_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|220aa|up_4|CP013943.1_326835_327495_+	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|725aa|up_3|CP013943.1_327758_329933_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|120aa|up_2|CP013943.1_330047_330407_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|239aa|up_1|CP013943.1_330659_331376_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|159aa|up_0|CP013943.1_331375_331852_+	cd06121, cupin_YML079wp, Saccharomyces cerevisiae YML079wp and related proteins, cupin domain	NA|225aa|down_0|CP013943.1_332162_332837_-	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA	NA|382aa|down_1|CP013943.1_333008_334154_+	PRK13289, PRK13289, NO-inducible flavohemoprotein	NA|62aa|down_2|CP013943.1_334173_334359_+	NA	NA|198aa|down_3|CP013943.1_334647_335241_+	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|285aa|down_4|CP013943.1_335321_336176_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|403aa|down_5|CP013943.1_336233_337442_+	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|163aa|down_6|CP013943.1_337448_337937_+	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|230aa|down_7|CP013943.1_337992_338682_-	pfam06570, DUF1129, Protein of unknown function (DUF1129)	NA|141aa|down_8|CP013943.1_339120_339543_+	TIGR01069, Endonuclease_MutS2, MutS2 family protein	NA|99aa|down_9|CP013943.1_339674_339971_+	NA
GCA_002850315.1_ASM285031v1	CP013943	Staphylococcus epidermidis strain DAR1907 chromosome, complete genome	2	838107-838208	2	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	TCATGTATAAGAAACACTAAATACCTATGTATTAAGTG	38	0	0	NA	NA	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|215aa|up_9|CP013943.1_828502_829147_+	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE)	NA|212aa|up_8|CP013943.1_829151_829787_+	TIGR01378, Thiamine_pyrophosphokinase, thiamine pyrophosphokinase	NA|63aa|up_7|CP013943.1_829869_830058_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|125aa|up_6|CP013943.1_830415_830790_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|up_5|CP013943.1_830804_832463_+	TIGR03599, YloV, DAK2 domain fusion protein YloV	cas3|683aa|up_4|CP013943.1_832666_834715_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|187aa|up_3|CP013943.1_834873_835434_+	PRK04424, PRK04424, transcription factor FapR	NA|326aa|up_2|CP013943.1_835435_836413_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|309aa|up_1|CP013943.1_836414_837341_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|245aa|up_0|CP013943.1_837333_838068_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|78aa|down_0|CP013943.1_838295_838529_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|246aa|down_1|CP013943.1_838643_839381_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1190aa|down_2|CP013943.1_839507_843077_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|409aa|down_3|CP013943.1_843073_844300_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|down_4|CP013943.1_844301_844634_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|down_5|CP013943.1_844664_846032_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|down_6|CP013943.1_846339_846615_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|down_7|CP013943.1_846741_847245_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|down_8|CP013943.1_847244_847982_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|down_9|CP013943.1_848087_848438_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional
GCA_002850315.1_ASM285031v1	CP013943	Staphylococcus epidermidis strain DAR1907 chromosome, complete genome	3	846139-846234	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	CATGCATAACCAAAAGTACGATTTACTTCGTAAA	34	0	0	NA	NA	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|187aa|up_9|CP013943.1_834873_835434_+	PRK04424, PRK04424, transcription factor FapR	NA|326aa|up_8|CP013943.1_835435_836413_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|309aa|up_7|CP013943.1_836414_837341_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|245aa|up_6|CP013943.1_837333_838068_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|78aa|up_5|CP013943.1_838295_838529_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|246aa|up_4|CP013943.1_838643_839381_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1190aa|up_3|CP013943.1_839507_843077_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|409aa|up_2|CP013943.1_843073_844300_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|up_1|CP013943.1_844301_844634_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|up_0|CP013943.1_844664_846032_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|down_0|CP013943.1_846339_846615_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|down_1|CP013943.1_846741_847245_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|down_2|CP013943.1_847244_847982_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|down_3|CP013943.1_848087_848438_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|868aa|down_4|CP013943.1_848967_851571_-	COG4485, COG4485, Predicted membrane protein [Function unknown]	NA|867aa|down_5|CP013943.1_851563_854164_-	pfam09586, YfhO, Bacterial membrane protein YfhO	NA|288aa|down_6|CP013943.1_854492_855356_+	PRK09563, rbgA, GTPase YlqF; Reviewed	NA|257aa|down_7|CP013943.1_855360_856131_+	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like	NA|389aa|down_8|CP013943.1_856238_857405_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|303aa|down_9|CP013943.1_857426_858335_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated
GCA_002850315.1_ASM285031v1	CP013943	Staphylococcus epidermidis strain DAR1907 chromosome, complete genome	4	2223675-2223758	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CAACTTGCCTTGTCCGTGGAATTTC	25	1	2	2223700-2223733|2223700-2223733	CP013943.1_1304554-1304587|CP013943.1_1304613-1304646	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|72aa|down_6|CP013943.1_2231193_2231409_-,NA|52aa|down_7|CP013943.1_2231389_2231545_+	NA|256aa|up_9|CP013943.1_2211382_2212150_+	PRK00208, thiG, thiazole synthase; Reviewed	NA|333aa|up_8|CP013943.1_2212151_2213150_+	TIGR02356, molybdopterin_biosynthesis_protein_moeB, thiazole biosynthesis adenylyltransferase ThiF, E	NA|205aa|up_7|CP013943.1_2213257_2213872_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|655aa|up_6|CP013943.1_2214045_2216010_+	COG3855, Fbp, Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]	NA|596aa|up_5|CP013943.1_2216238_2218026_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|350aa|up_4|CP013943.1_2218373_2219423_+	COG3949, COG3949, Uncharacterized membrane protein [Function unknown]	NA|475aa|up_3|CP013943.1_2219671_2221096_+	cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde dehydrogenase AldA-like	NA|316aa|up_2|CP013943.1_2221166_2222114_-	cd01017, AdcA, Metal binding protein AdcA	NA|94aa|up_1|CP013943.1_2222280_2222562_+	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase	NA|263aa|up_0|CP013943.1_2222823_2223612_+	COG2514, COG2514, Predicted ring-cleavage extradiol dioxygenase [General function prediction only]	NA|498aa|down_0|CP013943.1_2224440_2225934_-	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|221aa|down_1|CP013943.1_2226311_2226974_-	cd02149, NfsB-like, nitroreductase similar to Escherichia coli NfsB	NA|331aa|down_2|CP013943.1_2227220_2228213_+	PRK12480, PRK12480, D-lactate dehydrogenase; Provisional	NA|270aa|down_3|CP013943.1_2228399_2229209_-	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|204aa|down_4|CP013943.1_2229552_2230164_-	TIGR01076, Uncharacterized_protein_YhcS, LPXTG-site transpeptidase (sortase) family protein	NA|165aa|down_5|CP013943.1_2230329_2230824_+	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|72aa|down_6|CP013943.1_2231193_2231409_-	NA	NA|52aa|down_7|CP013943.1_2231389_2231545_+	NA	NA|338aa|down_8|CP013943.1_2231774_2232788_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|300aa|down_9|CP013943.1_2233334_2234234_-	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit
