The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP018867	Lactobacillus alimentarius DSM 20249 chromosome, complete genome	2333865	409268	414541	2333865		Staphylococcus_phage(50.0%)	6	NA	NA
AUI71062.1|409268_409997_+	hypothetical protein	NA	A0A2P9FI75	Pseudomonas_phage	28.3	5.0e-07
AUI72750.1|410352_411372_+	riboflavin biosynthesis protein RibD	NA	A0A2H4PQS8	Staphylococcus_phage	34.6	2.8e-40
AUI71063.1|411372_411972_+	riboflavin synthase subunit alpha	NA	A0A2I2L4R9	Orpheovirus	36.8	7.9e-19
AUI71064.1|411961_413164_+	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	47.2	8.3e-92
AUI71065.1|413165_413636_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	44.3	1.2e-27
AUI72751.1|413704_414541_-	aldo/keto reductase	NA	A0A1V0SDE7	Indivirus	25.0	3.8e-11
>prophage 2
CP018867	Lactobacillus alimentarius DSM 20249 chromosome, complete genome	2333865	804705	814706	2333865		Synechococcus_phage(33.33%)	10	NA	NA
AUI71384.1|804705_806250_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.1	2.1e-71
AUI71385.1|806227_806827_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.9	4.3e-25
AUI71386.1|806823_807843_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3FC27	Synechococcus_phage	41.6	2.0e-62
AUI71387.1|807855_809262_-	amidophosphoribosyltransferase	NA	A0A1B1ISH6	uncultured_Mediterranean_phage	30.7	5.4e-50
AUI71388.1|809237_811457_-	phosphoribosylformylglycinamidine synthase II	NA	A6N228	Microbacterium_phage	40.5	7.2e-142
AUI71389.1|811456_812131_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
AUI71390.1|812131_812377_-	phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA	NA
AUI71391.1|812386_813094_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA	NA
AUI71392.1|813097_814228_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AUI71393.1|814220_814706_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	47.3	2.1e-22
>prophage 3
CP018867	Lactobacillus alimentarius DSM 20249 chromosome, complete genome	2333865	1236517	1299331	2333865	transposase,tRNA	Macacine_betaherpesvirus(23.08%)	52	NA	NA
AUI71745.1|1236517_1237507_+|tRNA	tRNA-dihydrouridine synthase	tRNA	NA	NA	NA	NA
AUI71746.1|1237708_1238164_-	SprT family protein	NA	NA	NA	NA	NA
AUI71747.1|1238165_1238600_-	hypothetical protein	NA	NA	NA	NA	NA
AUI71748.1|1238605_1239586_-	glycosyltransferase	NA	B9UDL7	Salmonella_phage	38.0	5.4e-49
AUI71749.1|1239586_1241038_-	hypothetical protein	NA	NA	NA	NA	NA
AUI72804.1|1241056_1242208_-	aromatic amino acid aminotransferase	NA	NA	NA	NA	NA
AUI71750.1|1242388_1243204_-	NAD(+) synthase	NA	G3MA24	Bacillus_virus	52.9	3.3e-68
AUI71751.1|1243206_1244679_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	42.6	1.5e-103
AUI71752.1|1244718_1245795_-	glycosyl transferase	NA	NA	NA	NA	NA
AUI71753.1|1245853_1246579_+	glycosyltransferase	NA	NA	NA	NA	NA
AUI71754.1|1246626_1248021_-	hypothetical protein	NA	NA	NA	NA	NA
AUI71755.1|1248097_1248799_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AUI71756.1|1249304_1250780_-	peptide ABC transporter permease	NA	A0A0P0IY73	Acinetobacter_phage	33.0	3.4e-71
AUI71757.1|1250932_1252429_-	glycerol kinase	NA	NA	NA	NA	NA
AUI71758.1|1252467_1253976_-	glycerol kinase	NA	NA	NA	NA	NA
AUI71759.1|1257280_1258621_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AUI71760.1|1260142_1261360_-	NADPH-dependent FMN reductase	NA	A0A2P0ZL82	Lactobacillus_phage	65.9	1.6e-63
AUI71761.1|1261371_1261980_-	NADPH-dependent FMN reductase	NA	A0A2P0ZL77	Lactobacillus_phage	53.8	7.7e-54
AUI71762.1|1262080_1263010_-	thiamine biosynthesis protein ApbE	NA	NA	NA	NA	NA
AUI71763.1|1263110_1264931_+	FAD-binding dehydrogenase	NA	NA	NA	NA	NA
AUI71764.1|1265224_1265815_+	hypothetical protein	NA	NA	NA	NA	NA
AUI71765.1|1265850_1266330_+	hypothetical protein	NA	NA	NA	NA	NA
AUI71766.1|1266351_1267155_+	hypothetical protein	NA	NA	NA	NA	NA
AUI71767.1|1267596_1268886_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	44.8	2.0e-96
AUI71768.1|1269169_1270618_-	gamma-aminobutyrate permease	NA	NA	NA	NA	NA
AUI71769.1|1272020_1272638_-|transposase	transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	39.6	1.7e-32
AUI71770.1|1272916_1273246_-|transposase	transposase	transposase	NA	NA	NA	NA
AUI71771.1|1273242_1273449_-	hypothetical protein	NA	NA	NA	NA	NA
AUI71772.1|1274364_1274898_+|transposase	transposase	transposase	NA	NA	NA	NA
AUI71773.1|1275176_1275794_+|transposase	transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	39.6	1.7e-32
AUI71774.1|1275879_1276284_-	hypothetical protein	NA	NA	NA	NA	NA
AUI71775.1|1276264_1276969_-	hypothetical protein	NA	NA	NA	NA	NA
AUI71776.1|1276971_1277961_-	hypothetical protein	NA	NA	NA	NA	NA
AUI71777.1|1278057_1279155_-	hypothetical protein	NA	NA	NA	NA	NA
AUI71778.1|1279270_1280101_-	hypothetical protein	NA	NA	NA	NA	NA
AUI71779.1|1280225_1280705_-	hypothetical protein	NA	NA	NA	NA	NA
AUI71780.1|1280818_1281331_-	hypothetical protein	NA	NA	NA	NA	NA
AUI71781.1|1281434_1281929_+	lipid hydroperoxide peroxidase	NA	NA	NA	NA	NA
AUI71782.1|1282351_1283113_-	NADPH-dependent FMN reductase	NA	NA	NA	NA	NA
AUI71783.1|1283293_1283935_+	epimerase	NA	NA	NA	NA	NA
AUI71784.1|1284164_1285508_+	guanine permease	NA	A0A0R6PHV4	Moraxella_phage	34.0	3.4e-46
AUI71785.1|1285757_1288814_+	hypothetical protein	NA	NA	NA	NA	NA
AUI71786.1|1289154_1291065_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	36.0	2.7e-105
AUI71787.1|1291187_1291547_+	transcriptional regulator	NA	NA	NA	NA	NA
AUI71788.1|1291635_1293048_-	hypothetical protein	NA	NA	NA	NA	NA
AUI71789.1|1293281_1293857_+	hypothetical protein	NA	NA	NA	NA	NA
AUI71790.1|1294287_1295412_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	29.3	1.8e-24
AUI71791.1|1295598_1295871_+	hypothetical protein	NA	NA	NA	NA	NA
AUI71792.1|1296071_1296251_+	hypothetical protein	NA	NA	NA	NA	NA
AUI71793.1|1296617_1297190_-	hypothetical protein	NA	NA	NA	NA	NA
AUI71794.1|1297901_1298435_+|transposase	transposase	transposase	NA	NA	NA	NA
AUI71795.1|1298713_1299331_+|transposase	transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	39.6	1.7e-32
>prophage 4
CP018867	Lactobacillus alimentarius DSM 20249 chromosome, complete genome	2333865	1782613	1790689	2333865	transposase	Enterococcus_phage(42.86%)	10	NA	NA
AUI72212.1|1782613_1783231_-|transposase	transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	39.6	1.7e-32
AUI72213.1|1783509_1784043_-|transposase	transposase	transposase	NA	NA	NA	NA
AUI72214.1|1784120_1785146_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	66.5	9.4e-121
AUI72215.1|1785161_1787327_-	ribonucleotide-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	59.7	1.2e-250
AUI72216.1|1787313_1787688_-	ribonucleotide reductase assembly protein NrdI	NA	A0A142F1R4	Bacillus_phage	35.8	1.2e-12
AUI72217.1|1787693_1787924_-	NrdH-redoxin	NA	A0A249XUR7	Enterococcus_phage	47.3	4.7e-12
AUI72218.1|1788201_1788828_+	hypothetical protein	NA	NA	NA	NA	NA
AUI72219.1|1788886_1789093_-	DUF2187 domain-containing protein	NA	NA	NA	NA	NA
AUI72220.1|1789178_1789736_+	guanylate kinase	NA	A0A1W6JK60	Lactococcus_phage	28.6	2.2e-15
AUI72221.1|1789948_1790689_+	glycoside hydrolase	NA	A0A0A8WIF2	Clostridium_phage	41.3	1.3e-15
>prophage 5
CP018867	Lactobacillus alimentarius DSM 20249 chromosome, complete genome	2333865	2007149	2018083	2333865	transposase	Bacillus_virus(25.0%)	12	NA	NA
AUI72404.1|2007149_2008667_+	acyl-CoA synthetase	NA	Q75ZG1	Hepacivirus	29.9	4.6e-31
AUI72405.1|2008663_2009641_+	sulfonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUI72406.1|2009767_2010181_-	hypothetical protein	NA	NA	NA	NA	NA
AUI72407.1|2010177_2010432_-	hypothetical protein	NA	NA	NA	NA	NA
AUI72408.1|2010504_2011011_+	hypothetical protein	NA	X2CXD8	Lactobacillus_phage	36.1	2.9e-06
AUI72409.1|2011243_2011972_-	sulfonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	39.4	6.4e-31
AUI72410.1|2011971_2012781_-	ABC transporter permease	NA	G3M9Y4	Bacillus_virus	26.7	1.3e-19
AUI72411.1|2012784_2014287_-	acyl-CoA synthetase	NA	A0A1V0SBX8	Catovirus	23.9	4.9e-17
AUI72412.1|2014483_2015101_-|transposase	transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	39.6	1.7e-32
AUI72413.1|2015379_2015913_-|transposase	transposase	transposase	NA	NA	NA	NA
AUI72414.1|2016005_2017394_-	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	29.8	1.1e-26
AUI72415.1|2017390_2018083_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	34.2	2.9e-33
>prophage 1
CP018868	Lactobacillus alimentarius DSM 20249 plasmid pLDW-11, complete sequence	68058	10753	65124	68058	transposase	Staphylococcus_phage(35.71%)	50	NA	NA
AUI72859.1|10753_12025_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	31.4	9.2e-41
AUI72860.1|12307_13483_+|transposase	IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	28.8	2.6e-26
AUI72861.1|15476_15785_+|transposase	transposase	transposase	NA	NA	NA	NA
AUI72862.1|15748_16264_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AUI72863.1|16250_16610_-	hypothetical protein	NA	NA	NA	NA	NA
AUI72864.1|16788_18039_+	hypothetical protein	NA	A0A1S5SBP9	Streptococcus_phage	32.5	7.9e-45
AUI72865.1|18188_19247_-	hypothetical protein	NA	NA	NA	NA	NA
AUI72866.1|19343_19673_-	hypothetical protein	NA	NA	NA	NA	NA
AUI72867.1|19933_20689_-|transposase	transposase	transposase	Q6J1X2	Lactobacillus_phage	98.8	4.3e-139
AUI72868.1|20742_20994_-|transposase	transposase	transposase	Q6J1X3	Lactobacillus_phage	95.2	6.0e-37
AUI72869.1|21203_21446_-	hypothetical protein	NA	NA	NA	NA	NA
AUI72870.1|23049_24390_+	amino acid permease	NA	NA	NA	NA	NA
AUI72871.1|24706_27421_-	hypothetical protein	NA	NA	NA	NA	NA
AUI72872.1|27848_31016_+	restriction endonuclease	NA	A0A220A398	Liberibacter_phage	22.9	1.5e-20
AUI72873.1|31029_32652_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	50.5	4.3e-128
AUI72874.1|32641_33874_+	type I restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	32.7	6.6e-12
AUI72875.1|34305_35430_-	hypothetical protein	NA	NA	NA	NA	NA
AUI72876.1|35433_35649_-	hypothetical protein	NA	NA	NA	NA	NA
AUI72877.1|35770_37906_-	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	47.0	2.0e-109
AUI72878.1|37912_38323_-	hypothetical protein	NA	NA	NA	NA	NA
AUI72879.1|38337_39177_-	conjugal transfer protein	NA	NA	NA	NA	NA
AUI72880.1|39195_39585_-	hypothetical protein	NA	NA	NA	NA	NA
AUI72881.1|39596_41150_-	conjugal transfer protein	NA	NA	NA	NA	NA
AUI72882.1|41165_41555_-	hypothetical protein	NA	NA	NA	NA	NA
AUI72883.1|41551_42037_-	conjugal transfer protein	NA	NA	NA	NA	NA
AUI72884.1|42037_42406_-	thioredoxin	NA	NA	NA	NA	NA
AUI72885.1|42392_43010_-	hypothetical protein	NA	NA	NA	NA	NA
AUI72886.1|43023_44178_-	peptidoglycan hydrolase	NA	A0A1X9I9Q1	Staphylococcus_phage	38.1	1.3e-14
AUI72887.1|44178_45597_-	conjugal transfer protein	NA	NA	NA	NA	NA
AUI72888.1|45589_47605_-	conjugal transfer protein	NA	NA	NA	NA	NA
AUI72889.1|47616_48276_-	conjugal transfer protein	NA	NA	NA	NA	NA
AUI72890.1|48244_48607_-	conjugal transfer protein	NA	NA	NA	NA	NA
AUI72891.1|48627_48963_-	conjugal transfer protein	NA	NA	NA	NA	NA
AUI72892.1|48964_49579_-	hypothetical protein	NA	NA	NA	NA	NA
AUI72893.1|49617_49926_-	hypothetical protein	NA	NA	NA	NA	NA
AUI72894.1|50009_52070_-	nickase	NA	NA	NA	NA	NA
AUI72895.1|52321_52549_+	hypothetical protein	NA	NA	NA	NA	NA
AUI72896.1|52571_52850_+	hypothetical protein	NA	NA	NA	NA	NA
AUI72897.1|52839_53520_-	ATPase	NA	NA	NA	NA	NA
AUI72898.1|53516_53702_-	hypothetical protein	NA	NA	NA	NA	NA
AUI72899.1|53748_54030_-	damage-inducible protein J	NA	NA	NA	NA	NA
AUI72900.1|54256_55336_-	plasmid replication initiation protein	NA	NA	NA	NA	NA
AUI72901.1|55942_56191_-	hypothetical protein	NA	NA	NA	NA	NA
AUI72902.1|56204_57011_-	peptide transporter	NA	A0A1V0DZZ0	Clostridioides_phage	30.1	2.3e-21
AUI72903.1|57107_57701_-	Pin-related site-specific recombinase/DNA invertase	NA	M4QQC6	Vibrio_phage	42.4	4.6e-19
AUI72904.1|58122_59328_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AUI72905.1|59612_60884_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	31.4	9.2e-41
AUI72906.1|61166_62342_+|transposase	IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	28.8	2.6e-26
AUI72907.1|64336_64645_+|transposase	transposase	transposase	NA	NA	NA	NA
AUI72908.1|64608_65124_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
