assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002843235.2_ASM284323v2	CP031123	Providencia sp. WCHPr000369 chromosome, complete genome	1	1475252-1475938	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	cas3,DEDDh,RT,PD-DExK,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3,WYL,TnsE_C	Type I-F	TTTCTAAGCCGCCTGTATGGCGGTGAAC,TTTCTAAGCCGCCTGTATGGCGGTGAAC,TTTCTAAGCCGCCTGTNTGGCGGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	11,11,11	11	TypeI-F	cas3,DEDDh,RT,PD-DExK,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3,WYL,TnsE_C	NA,NA|94aa|down_6|CP031123.1_1484526_1484808_+,NA|95aa|down_9|CP031123.1_1487223_1487508_+	NA|148aa|up_9|CP031123.1_1468412_1468856_+	PRK05689, fliJ, flagella biosynthesis chaperone FliJ	NA|456aa|up_8|CP031123.1_1468856_1470224_+	PRK10118, PRK10118, flagellar hook length control protein FliK	NA|160aa|up_7|CP031123.1_1470386_1470866_+	PRK07021, fliL, flagellar basal body-associated protein FliL; Reviewed	NA|336aa|up_6|CP031123.1_1470871_1471879_+	PRK06666, fliM, flagellar motor switch protein FliM; Validated	NA|139aa|up_5|CP031123.1_1471871_1472288_+	PRK07963, fliN, flagellar motor switch protein FliN; Validated	NA|153aa|up_4|CP031123.1_1472310_1472769_+	PRK11486, PRK11486, flagellar type III secretion system protein FliO	NA|248aa|up_3|CP031123.1_1472781_1473525_+	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed	NA|90aa|up_2|CP031123.1_1473547_1473817_+	PRK05700, fliQ, flagellar type III secretion system protein FliQ	NA|260aa|up_1|CP031123.1_1473819_1474599_+	PRK05701, fliR, flagellar type III secretion system protein FliR	NA|91aa|up_0|CP031123.1_1474933_1475206_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	cas6f|212aa|down_0|CP031123.1_1476068_1476704_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|341aa|down_1|CP031123.1_1476712_1477735_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|315aa|down_2|CP031123.1_1477737_1478682_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|423aa|down_3|CP031123.1_1478678_1479947_-	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas3f|1152aa|down_4|CP031123.1_1479974_1483430_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|325aa|down_5|CP031123.1_1483426_1484401_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|94aa|down_6|CP031123.1_1484526_1484808_+	NA	NA|361aa|down_7|CP031123.1_1484861_1485944_+	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]	NA|248aa|down_8|CP031123.1_1486164_1486908_-	cd06532, Glyco_transf_25, Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis	NA|95aa|down_9|CP031123.1_1487223_1487508_+	NA
GCA_002843235.2_ASM284323v2	CP031123	Providencia sp. WCHPr000369 chromosome, complete genome	2	1487505-1487658	2,2	CRISPRCasFinder,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	cas3,DEDDh,RT,PD-DExK,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3,WYL,TnsE_C	Type I-F	GCTGATTTCTAAGCTGCCTGTGTGGCAGTGAACT,CAGCTGATTTCTAAGCTGCCTGTGTGGCAGTGAAC	34,35	0	0	NA	NA	I-F:I-F	2,2	2	TypeI-F	cas3,DEDDh,RT,PD-DExK,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3,WYL,TnsE_C	NA|94aa|up_2|CP031123.1_1484526_1484808_+,NA	NA|91aa|up_9|CP031123.1_1474933_1475206_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	cas6f|212aa|up_8|CP031123.1_1476068_1476704_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|341aa|up_7|CP031123.1_1476712_1477735_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|315aa|up_6|CP031123.1_1477737_1478682_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|423aa|up_5|CP031123.1_1478678_1479947_-	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas3f|1152aa|up_4|CP031123.1_1479974_1483430_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|325aa|up_3|CP031123.1_1483426_1484401_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|94aa|up_2|CP031123.1_1484526_1484808_+	NA	NA|361aa|up_1|CP031123.1_1484861_1485944_+	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]	NA|248aa|up_0|CP031123.1_1486164_1486908_-	cd06532, Glyco_transf_25, Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis	NA|312aa|down_0|CP031123.1_1487936_1488872_-	PRK08027, flgL, flagellar hook-filament junction protein FlgL	NA|548aa|down_1|CP031123.1_1488900_1490544_-	PRK08147, flgK, flagellar hook-associated protein FlgK; Validated	NA|327aa|down_2|CP031123.1_1490685_1491666_-	PRK05684, flgJ, flagellar assembly peptidoglycan hydrolase FlgJ	NA|368aa|down_3|CP031123.1_1491665_1492769_-	PRK05303, flgI, flagellar basal body P-ring protein FlgI	NA|249aa|down_4|CP031123.1_1492804_1493551_-	PRK00249, flgH, flagellar basal body L-ring protein FlgH	NA|261aa|down_5|CP031123.1_1493656_1494439_-	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional	NA|252aa|down_6|CP031123.1_1494457_1495213_-	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|420aa|down_7|CP031123.1_1495228_1496488_-	PRK05682, flgE, flagellar hook protein FlgE; Validated	NA|286aa|down_8|CP031123.1_1496515_1497373_-	PRK06655, flgD, flagellar hook assembly protein FlgD	NA|135aa|down_9|CP031123.1_1497385_1497790_-	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed
GCA_002843235.2_ASM284323v2	CP031123	Providencia sp. WCHPr000369 chromosome, complete genome	3	3131870-3132009	3	PILER-CR	no	TnsE_C	cas3,DEDDh,RT,PD-DExK,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3,WYL,TnsE_C	Orphan	CCCAGTTCCCAACTATTTTGTCA	23	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,RT,PD-DExK,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3,WYL,TnsE_C	NA|126aa|up_9|CP031123.1_3126040_3126418_-,NA|108aa|up_8|CP031123.1_3126471_3126795_-,NA|124aa|up_7|CP031123.1_3126827_3127199_-,NA|166aa|up_6|CP031123.1_3127259_3127757_-,NA|389aa|down_0|CP031123.1_3132122_3133289_+,NA|305aa|down_1|CP031123.1_3133407_3134322_-	NA|126aa|up_9|CP031123.1_3126040_3126418_-	NA	NA|108aa|up_8|CP031123.1_3126471_3126795_-	NA	NA|124aa|up_7|CP031123.1_3126827_3127199_-	NA	NA|166aa|up_6|CP031123.1_3127259_3127757_-	NA	NA|263aa|up_5|CP031123.1_3127832_3128621_-	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional	NA|175aa|up_4|CP031123.1_3128678_3129203_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|158aa|up_3|CP031123.1_3129297_3129771_-	cd00209, DHFR, Dihydrofolate reductase (DHFR)	NA|179aa|up_2|CP031123.1_3130102_3130639_+	TIGR02249, Integrase/recombinase_E2_protein	NA|109aa|up_1|CP031123.1_3130753_3131080_+	TIGR02249, Integrase/recombinase_E2_protein	NA|80aa|up_0|CP031123.1_3131267_3131507_-	pfam08849, DUF1819, Putative inner membrane protein (DUF1819)	NA|389aa|down_0|CP031123.1_3132122_3133289_+	NA	NA|305aa|down_1|CP031123.1_3133407_3134322_-	NA	NA|182aa|down_2|CP031123.1_3134391_3134937_-	pfam17937, TetR_C_28, Tetracyclin repressor-like, C-terminal domain	NA|502aa|down_3|CP031123.1_3135032_3136538_+	PRK14995, PRK14995, SmvA family efflux MFS transporter	NA|470aa|down_4|CP031123.1_3136580_3137990_-	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|221aa|down_5|CP031123.1_3138064_3138727_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|838aa|down_6|CP031123.1_3138764_3141278_-	cd03748, Ntn_PGA, Penicillin G acylase (PGA) is the key enzyme in the industrial production of beta-lactam antibiotics	NA|192aa|down_7|CP031123.1_3141443_3142019_-	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]	NA|1646aa|down_8|CP031123.1_3142018_3146956_-	pfam12458, DUF3686, ATPase involved in DNA repair	NA|734aa|down_9|CP031123.1_3147051_3149253_-	COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown]
GCA_002843235.2_ASM284323v2	CP031123	Providencia sp. WCHPr000369 chromosome, complete genome	4	3710008-3710121	3	CRISPRCasFinder	no		cas3,DEDDh,RT,PD-DExK,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3,WYL,TnsE_C	Orphan	AATTTTCGTCATCCTTCGAGCTGTAGCGGTGTTGGCTA	38	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,RT,PD-DExK,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3,WYL,TnsE_C	NA,NA|489aa|down_0|CP031123.1_3710247_3711714_-	NA|251aa|up_9|CP031123.1_3701897_3702650_+	PRK15285, PRK15285, fimbrial chaperone StfD	NA|194aa|up_8|CP031123.1_3702663_3703245_+	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|185aa|up_7|CP031123.1_3703237_3703792_+	PRK15287, PRK15287, fimbrial minor subunit StfF	NA|170aa|up_6|CP031123.1_3703778_3704288_+	PRK15287, PRK15287, fimbrial minor subunit StfF	NA|177aa|up_5|CP031123.1_3704287_3704818_+	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|281aa|up_4|CP031123.1_3704835_3705678_+	PRK15301, PRK15301, hypothetical protein; Provisional	NA|91aa|up_3|CP031123.1_3705692_3705965_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|323aa|up_2|CP031123.1_3706343_3707312_+	COG4607, CeuA, ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|321aa|up_1|CP031123.1_3707315_3708278_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|328aa|up_0|CP031123.1_3708264_3709248_+	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|489aa|down_0|CP031123.1_3710247_3711714_-	NA	NA|168aa|down_1|CP031123.1_3711930_3712434_-	cd06151, YjgF_YER057c_UK114_like_3, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|473aa|down_2|CP031123.1_3712557_3713976_-	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|221aa|down_3|CP031123.1_3714894_3715557_-	pfam06267, DUF1028, Family of unknown function (DUF1028)	NA|520aa|down_4|CP031123.1_3715720_3717280_+	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold	NA|316aa|down_5|CP031123.1_3717331_3718279_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|605aa|down_6|CP031123.1_3718275_3720090_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|268aa|down_7|CP031123.1_3720089_3720893_+	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|257aa|down_8|CP031123.1_3720923_3721694_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|352aa|down_9|CP031123.1_3721698_3722754_+	TIGR03106, trio_M42_hydro, hydrolase, peptidase M42 family
GCA_002843235.2_ASM284323v2	CP031123	Providencia sp. WCHPr000369 chromosome, complete genome	5	3931158-3931257	4	CRISPRCasFinder	no		cas3,DEDDh,RT,PD-DExK,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3,WYL,TnsE_C	Orphan	AGTCACATACTGGTGTATGCTCCT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,RT,PD-DExK,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3,WYL,TnsE_C	NA,NA	NA|165aa|up_9|CP031123.1_3919972_3920467_+	PRK11798, PRK11798, ClpXP protease specificity-enhancing factor; Provisional	NA|495aa|up_8|CP031123.1_3920552_3922037_-	TIGR01318, glutamate_synthase_small_subunit_gltD, glutamate synthase small subunit family protein, proteobacterial	NA|782aa|up_7|CP031123.1_3922259_3924605_+	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional	NA|217aa|up_6|CP031123.1_3924837_3925488_+	PRK11780, PRK11780, isoprenoid biosynthesis glyoxalase ElbB	NA|241aa|up_5|CP031123.1_3925496_3926219_+	PRK00056, mtgA, monofunctional biosynthetic peptidoglycan transglycosylase; Provisional	NA|192aa|up_4|CP031123.1_3926282_3926858_-	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|197aa|up_3|CP031123.1_3926867_3927458_-	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional	NA|127aa|up_2|CP031123.1_3927573_3927954_-	PRK12497, PRK12497, YraN family protein	NA|571aa|up_1|CP031123.1_3927993_3929706_-	COG3107, LppC, Putative lipoprotein [General function prediction only]	NA|291aa|up_0|CP031123.1_3929767_3930640_+	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional	NA|366aa|down_0|CP031123.1_3931515_3932613_+	COG0348, NapH, Polyferredoxin [Energy production and conversion]	NA|247aa|down_1|CP031123.1_3932739_3933480_-	TIGR03581, EF_0839, conserved hypothetical protein EF_0839/AHA_3917	NA|371aa|down_2|CP031123.1_3933481_3934594_-	TIGR01437, selA_rel, uncharacterized pyridoxal phosphate-dependent enzyme	NA|380aa|down_3|CP031123.1_3934577_3935717_-	PRK09237, PRK09237, amidohydrolase/deacetylase family metallohydrolase	NA|217aa|down_4|CP031123.1_3935845_3936496_-	TIGR03579, EF_0833, conserved hypothetical protein EF_0833/AHA_3914	NA|264aa|down_5|CP031123.1_3936498_3937290_-	TIGR03580, EF_0832, conserved hypothetical protein EF_0832/AHA_3913	NA|99aa|down_6|CP031123.1_3937316_3937613_-	TIGR03578, EF_0831, conserved hypothetical protein EF_0831/AHA_3912	NA|122aa|down_7|CP031123.1_3937612_3937978_-	TIGR03577, EF_0830, conserved hypothetical protein EF_0830/AHA_3911	NA|113aa|down_8|CP031123.1_3938010_3938349_-	TIGR03582, EF_0829, PRD domain protein EF_0829/AHA_3910	NA|657aa|down_9|CP031123.1_3938831_3940802_-	COG3711, BglG, Transcriptional antiterminator [Transcription]
