assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002812345.2_ASM281234v2	CP025023	Staphylococcus argenteus strain XNO106 chromosome, complete genome	1	37147-37470	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	Type III-C,Type III-A,Type III-D,Type III-B	TGATCGATAACTACCCCGAAGAATAGGGGACGAGAAC,TGATCGATAACTACCCCGAAGAATAGGGGAC,TGATCGATAACTACCCCGAAGAATAGGGGACGAGAAC	37,31,37	0	0	NA	NA	NA:NA:NA	3,4,4	4	TypeIII-C,TypeIII-A,TypeIII-D,TypeIII-B	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	NA,NA	NA|149aa|up_9|CP025023.1_19707_20154_+	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|467aa|up_8|CP025023.1_20185_21586_+	TIGR00665, DnaB, replicative DNA helicase	NA|428aa|up_7|CP025023.1_21863_23147_+	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|234aa|up_6|CP025023.1_24330_25032_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|609aa|up_5|CP025023.1_25044_26871_+	NF033092, HK_WalK, cell wall metabolism sensor histidine kinase WalK	NA|445aa|up_4|CP025023.1_26863_28198_+	COG4863, COG4863, Uncharacterized protein conserved in bacteria [Function unknown]	NA|263aa|up_3|CP025023.1_28198_28987_+	COG4853, COG4853, Uncharacterized protein conserved in bacteria [Function unknown]	NA|267aa|up_2|CP025023.1_29381_30182_+	cd07733, YycJ-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis YycJ and related proteins; MBL-fold metallo hydrolase domain	NA|771aa|up_1|CP025023.1_30409_32722_+	cd07408, MPP_SA0022_N, Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain	NA|160aa|up_0|CP025023.1_33090_33570_+	pfam02590, SPOUT_MTase, Predicted SPOUT methyltransferase	cas1|302aa|down_0|CP025023.1_37543_38449_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|down_1|CP025023.1_38448_38754_+	TIGR01573, cas2, CRISPR-associated endonuclease Cas2	cas10|758aa|down_2|CP025023.1_38767_41041_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|142aa|down_3|CP025023.1_41043_41469_+	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	csm3gr7|215aa|down_4|CP025023.1_41470_42115_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|303aa|down_5|CP025023.1_42125_43034_+	TIGR01903, Hypothetical_protein	csm5gr7|341aa|down_6|CP025023.1_43036_44059_+	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm6|423aa|down_7|CP025023.1_44058_45327_+	TIGR02672, hypothetical_protein_SERP2456, CRISPR type III-A/MTUBE-associated protein Csm6	cas6|245aa|down_8|CP025023.1_45323_46058_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	RT|509aa|down_9|CP025023.1_47326_48853_+	cd01646, RT_Bac_retron_I, RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons
GCA_002812345.2_ASM281234v2	CP025023	Staphylococcus argenteus strain XNO106 chromosome, complete genome	2	46190-46591	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	Type III-C,Type III-A,Type III-D,Type III-B	TATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC,TATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC,TATTCGATAACTACCCCGAAGAANAGGGGACGAGAAC	37,37,37	0	0	NA	NA	NA:NA:NA	4,5,5	5	TypeIII-C,TypeIII-A,TypeIII-D,TypeIII-B	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	NA,NA|70aa|down_1|CP025023.1_49382_49592_+,NA|94aa|down_2|CP025023.1_49572_49854_+,NA|68aa|down_4|CP025023.1_51358_51562_+,NA|199aa|down_8|CP025023.1_54942_55539_+	NA|160aa|up_9|CP025023.1_33090_33570_+	pfam02590, SPOUT_MTase, Predicted SPOUT methyltransferase	cas1|302aa|up_8|CP025023.1_37543_38449_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|up_7|CP025023.1_38448_38754_+	TIGR01573, cas2, CRISPR-associated endonuclease Cas2	cas10|758aa|up_6|CP025023.1_38767_41041_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|142aa|up_5|CP025023.1_41043_41469_+	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	csm3gr7|215aa|up_4|CP025023.1_41470_42115_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|303aa|up_3|CP025023.1_42125_43034_+	TIGR01903, Hypothetical_protein	csm5gr7|341aa|up_2|CP025023.1_43036_44059_+	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm6|423aa|up_1|CP025023.1_44058_45327_+	TIGR02672, hypothetical_protein_SERP2456, CRISPR type III-A/MTUBE-associated protein Csm6	cas6|245aa|up_0|CP025023.1_45323_46058_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	RT|509aa|down_0|CP025023.1_47326_48853_+	cd01646, RT_Bac_retron_I, RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons	NA|70aa|down_1|CP025023.1_49382_49592_+	NA	NA|94aa|down_2|CP025023.1_49572_49854_+	NA	NA|311aa|down_3|CP025023.1_50064_50997_-	COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]	NA|68aa|down_4|CP025023.1_51358_51562_+	NA	NA|99aa|down_5|CP025023.1_51610_51907_+	COG3070, TfoX, Regulator of competence-specific genes [Transcription]	NA|522aa|down_6|CP025023.1_52218_53784_+	pfam01494, FAD_binding_3, FAD binding domain	NA|142aa|down_7|CP025023.1_53946_54372_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|199aa|down_8|CP025023.1_54942_55539_+	NA	NA|1051aa|down_9|CP025023.1_55803_58956_+	COG1112, COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair]
GCA_002812345.2_ASM281234v2	CP025023	Staphylococcus argenteus strain XNO106 chromosome, complete genome	3	657116-657195	3	CRISPRCasFinder	no		cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	Orphan	ACTTTCCGCCAGCTTCTGTGTTGG	24	0	0	NA	NA	NA	1	1	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	NA,NA|31aa|down_2|CP025023.1_661306_661399_+	NA|248aa|up_9|CP025023.1_647367_648111_-	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|215aa|up_8|CP025023.1_648232_648877_+	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription]	NA|251aa|up_7|CP025023.1_648951_649704_-	pfam13398, Peptidase_M50B, Peptidase M50B-like	NA|255aa|up_6|CP025023.1_649940_650705_+	COG1922, WecG, Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]	NA|265aa|up_5|CP025023.1_650768_651563_-	PRK13546, PRK13546, teichoic acids export ABC transporter ATP-binding subunit TagH	NA|271aa|up_4|CP025023.1_651909_652722_+	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|367aa|up_3|CP025023.1_652820_653921_+	COG1887, TagB, Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]	NA|356aa|up_2|CP025023.1_653917_654985_+	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	NA|133aa|up_1|CP025023.1_655041_655440_+	cd02171, G3P_Cytidylyltransferase, glycerol-3-phosphate cytidylyltransferase	NA|432aa|up_0|CP025023.1_655523_656819_-	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|576aa|down_0|CP025023.1_657706_659434_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|410aa|down_1|CP025023.1_659801_661031_+	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|31aa|down_2|CP025023.1_661306_661399_+	NA	NA|278aa|down_3|CP025023.1_661574_662408_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|266aa|down_4|CP025023.1_662678_663476_+	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|335aa|down_5|CP025023.1_663507_664512_+	pfam01032, FecCD, FecCD transport family	NA|339aa|down_6|CP025023.1_664508_665525_+	pfam01032, FecCD, FecCD transport family	NA|322aa|down_7|CP025023.1_665743_666709_+	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional	NA|195aa|down_8|CP025023.1_666753_667338_+	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|121aa|down_9|CP025023.1_667330_667693_+	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional
GCA_002812345.2_ASM281234v2	CP025023	Staphylococcus argenteus strain XNO106 chromosome, complete genome	4	689990-690074	4	CRISPRCasFinder	no		cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	Orphan	ACAACTGCATAAGAGCCCCTAAT	23	0	0	NA	NA	NA	1	1	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	NA,NA|230aa|down_2|CP025023.1_691912_692602_-,NA|228aa|down_9|CP025023.1_695952_696636_-	NA|206aa|up_9|CP025023.1_678744_679362_+	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]	NA|336aa|up_8|CP025023.1_679377_680385_+	pfam01384, PHO4, Phosphate transporter family	NA|266aa|up_7|CP025023.1_681013_681811_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|218aa|up_6|CP025023.1_682167_682821_+	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|717aa|up_5|CP025023.1_683522_685673_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|142aa|up_4|CP025023.1_685752_686178_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|239aa|up_3|CP025023.1_686368_687085_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|160aa|up_2|CP025023.1_687084_687564_+	cd06121, cupin_YML079wp, Saccharomyces cerevisiae YML079wp and related proteins, cupin domain	NA|217aa|up_1|CP025023.1_688279_688930_+	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|289aa|up_0|CP025023.1_689040_689907_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|401aa|down_0|CP025023.1_690108_691311_+	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|163aa|down_1|CP025023.1_691325_691814_+	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|230aa|down_2|CP025023.1_691912_692602_-	NA	NA|148aa|down_3|CP025023.1_692729_693173_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|127aa|down_4|CP025023.1_693239_693620_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|100aa|down_5|CP025023.1_693759_694059_+	pfam12543, DUF3738, Protein of unknown function (DUF3738)	NA|181aa|down_6|CP025023.1_694140_694683_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|189aa|down_7|CP025023.1_694924_695491_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|153aa|down_8|CP025023.1_695491_695950_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|228aa|down_9|CP025023.1_695952_696636_-	NA
GCA_002812345.2_ASM281234v2	CP025023	Staphylococcus argenteus strain XNO106 chromosome, complete genome	5	850764-850826	5	CRISPRCasFinder	no		cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	Orphan	ATACGAAAATTCGTATATATTGGA	24	1	8	850788-850802|850788-850802|850788-850802|850788-850802|850788-850802|850788-850802|850788-850802|850788-850802	CP025023.1_909660-909646|CP025023.1_1035718-1035732|CP025023.1_1311147-1311161|CP025250.1_3235-3221|CP025250.1_3236-3222|CP025250.1_3309-3295|CP025250.1_15732-15746|CP025250.1_16809-16795	NA	1	1	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	NA|67aa|up_3|CP025023.1_848563_848764_+,NA|72aa|down_0|CP025023.1_850919_851135_+,NA|61aa|down_1|CP025023.1_851271_851454_-,NA|72aa|down_4|CP025023.1_852848_853064_+,NA|82aa|down_5|CP025023.1_853019_853265_-,NA|74aa|down_6|CP025023.1_853335_853557_+	NA|254aa|up_9|CP025023.1_841821_842583_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|up_8|CP025023.1_842681_843989_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|up_7|CP025023.1_844090_845332_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|155aa|up_6|CP025023.1_845321_845786_+	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|466aa|up_5|CP025023.1_845937_847335_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|350aa|up_4|CP025023.1_847402_848452_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|67aa|up_3|CP025023.1_848563_848764_+	NA	NA|302aa|up_2|CP025023.1_848700_849606_-	PRK04203, rpl1P, 50S ribosomal protein L1P; Reviewed	NA|62aa|up_1|CP025023.1_849641_849827_-	cd16157, GALNS, galactosamine-6-sulfatase; also known as N-acetylgalactosamine-6-sulfatase (GALNS)	NA|234aa|up_0|CP025023.1_850022_850724_-	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|72aa|down_0|CP025023.1_850919_851135_+	NA	NA|61aa|down_1|CP025023.1_851271_851454_-	NA	NA|62aa|down_2|CP025023.1_851896_852082_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|250aa|down_3|CP025023.1_852083_852833_+	pfam03374, ANT, Phage antirepressor protein KilAC domain	NA|72aa|down_4|CP025023.1_852848_853064_+	NA	NA|82aa|down_5|CP025023.1_853019_853265_-	NA	NA|74aa|down_6|CP025023.1_853335_853557_+	NA	NA|53aa|down_7|CP025023.1_853549_853708_+	pfam06900, DUF1270, Protein of unknown function (DUF1270)	NA|87aa|down_8|CP025023.1_853802_854063_+	pfam06531, DUF1108, Protein of unknown function (DUF1108)	NA|160aa|down_9|CP025023.1_854077_854557_+	pfam05565, Sipho_Gp157, Siphovirus Gp157
GCA_002812345.2_ASM281234v2	CP025023	Staphylococcus argenteus strain XNO106 chromosome, complete genome	7	1217959-1218047	7	CRISPRCasFinder	no	cas3	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	Unclear	CAGTAATCAATAAAATTGATAACTG	25	0	0	NA	NA	NA	1	1	Unclear	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	NA,NA	NA|215aa|up_9|CP025023.1_1207605_1208250_+	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE)	NA|215aa|up_8|CP025023.1_1208256_1208901_+	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|63aa|up_7|CP025023.1_1209150_1209339_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|125aa|up_6|CP025023.1_1209782_1210157_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|549aa|up_5|CP025023.1_1210171_1211818_+	TIGR03599, YloV, DAK2 domain fusion protein YloV	cas3|687aa|up_4|CP025023.1_1211991_1214052_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|191aa|up_3|CP025023.1_1214456_1215029_+	PRK04424, PRK04424, transcription factor FapR	NA|329aa|up_2|CP025023.1_1215033_1216020_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|309aa|up_1|CP025023.1_1216012_1216939_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|245aa|up_0|CP025023.1_1216931_1217666_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|78aa|down_0|CP025023.1_1218135_1218369_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|down_1|CP025023.1_1218484_1219216_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1190aa|down_2|CP025023.1_1219347_1222917_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|down_3|CP025023.1_1222913_1224164_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|down_4|CP025023.1_1224150_1224483_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|down_5|CP025023.1_1224507_1225875_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|down_6|CP025023.1_1226203_1226479_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|down_7|CP025023.1_1226665_1227169_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|down_8|CP025023.1_1227168_1227906_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|down_9|CP025023.1_1228008_1228359_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional
GCA_002812345.2_ASM281234v2	CP025023	Staphylococcus argenteus strain XNO106 chromosome, complete genome	9	2008804-2008892	9	CRISPRCasFinder	no		cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	Orphan	GTTTTTGACTGACTTCTCAATCA	23	0	0	NA	NA	NA	1	1	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	NA|114aa|up_9|CP025023.1_2002716_2003058_-,NA|127aa|up_7|CP025023.1_2004212_2004593_-,NA|70aa|up_3|CP025023.1_2007900_2008110_-,NA|49aa|up_2|CP025023.1_2008102_2008249_-,NA	NA|114aa|up_9|CP025023.1_2002716_2003058_-	NA	NA|214aa|up_8|CP025023.1_2003574_2004216_-	pfam16560, SAPI, Putative mobile pathogenicity island	NA|127aa|up_7|CP025023.1_2004212_2004593_-	NA	NA|567aa|up_6|CP025023.1_2004922_2006623_-	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|290aa|up_5|CP025023.1_2006636_2007506_-	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|109aa|up_4|CP025023.1_2007571_2007898_-	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|70aa|up_3|CP025023.1_2007900_2008110_-	NA	NA|49aa|up_2|CP025023.1_2008102_2008249_-	NA	NA|106aa|up_1|CP025023.1_2008245_2008563_-	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|73aa|up_0|CP025023.1_2008567_2008786_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|225aa|down_0|CP025023.1_2008958_2009633_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|391aa|down_1|CP025023.1_2009646_2010819_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|539aa|down_2|CP025023.1_2010887_2012504_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_3|CP025023.1_2012575_2012860_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_4|CP025023.1_2013036_2013780_+	pfam02517, Abi, CAAX protease self-immunity	NA|420aa|down_5|CP025023.1_2013805_2015065_-	TIGR04526, predic_Ig_block, putative immunoglobulin-blocking virulence protein	NA|209aa|down_6|CP025023.1_2015260_2015887_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_7|CP025023.1_2015987_2016773_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_8|CP025023.1_2017293_2017428_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_9|CP025023.1_2017663_2018227_+	smart00793, AgrB, Accessory gene regulator B
GCA_002812345.2_ASM281234v2	CP025023	Staphylococcus argenteus strain XNO106 chromosome, complete genome	10	2213741-2213884	10	CRISPRCasFinder	no	WYL	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	Unclear	CTCTTTACTCGAAAGCTCACAAAACCCTTGATATCATTGGTTTCCCATGATTTTT	55	0	0	NA	NA	NA	1	1	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	NA|44aa|up_9|CP025023.1_2202587_2202719_-,NA|61aa|up_0|CP025023.1_2212728_2212911_-,NA	NA|44aa|up_9|CP025023.1_2202587_2202719_-	NA	NA|283aa|up_8|CP025023.1_2202926_2203775_-	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|139aa|up_7|CP025023.1_2203844_2204261_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|803aa|up_6|CP025023.1_2204665_2207074_+	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family	WYL|310aa|up_5|CP025023.1_2207248_2208178_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|210aa|up_4|CP025023.1_2208268_2208898_+	cd03140, GATase1_PfpI_3, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus	NA|142aa|up_3|CP025023.1_2209092_2209518_+	pfam03642, MAP, MAP domain	NA|235aa|up_2|CP025023.1_2209906_2210611_-	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|555aa|up_1|CP025023.1_2210647_2212312_-	PRK08617, PRK08617, acetolactate synthase AlsS	NA|61aa|up_0|CP025023.1_2212728_2212911_-	NA	NA|479aa|down_0|CP025023.1_2213922_2215359_-	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|133aa|down_1|CP025023.1_2215707_2216106_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_2|CP025023.1_2216119_2216557_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|268aa|down_3|CP025023.1_2216796_2217600_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|269aa|down_4|CP025023.1_2217604_2218411_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|287aa|down_5|CP025023.1_2218400_2219261_-	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|270aa|down_6|CP025023.1_2219257_2220067_-	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|123aa|down_7|CP025023.1_2220558_2220927_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|315aa|down_8|CP025023.1_2220943_2221888_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|130aa|down_9|CP025023.1_2221961_2222351_-	PRK05309, PRK05309, 30S ribosomal protein S11; Validated
GCA_002812345.2_ASM281234v2	CP025023	Staphylococcus argenteus strain XNO106 chromosome, complete genome	11	2563743-2563837	11	CRISPRCasFinder	no		cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	Orphan	TCATTATTTTCCAAATAATAAGTG	24	0	0	NA	NA	NA	1	1	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,RT,cas3,casR,DEDDh,DinG,csa3,WYL	NA|56aa|up_4|CP025023.1_2557869_2558037_-,NA|64aa|up_1|CP025023.1_2560713_2560905_+,NA|128aa|down_9|CP025023.1_2574982_2575366_+	NA|57aa|up_9|CP025023.1_2551968_2552139_-	pfam12669, P12, Virus attachment protein p12 family	NA|661aa|up_8|CP025023.1_2552151_2554134_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|76aa|up_7|CP025023.1_2554145_2554373_-	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism]	NA|821aa|up_6|CP025023.1_2554619_2557082_-	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|183aa|up_5|CP025023.1_2557245_2557794_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|56aa|up_4|CP025023.1_2557869_2558037_-	NA	NA|515aa|up_3|CP025023.1_2558148_2559693_-	PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase; Provisional	NA|199aa|up_2|CP025023.1_2559887_2560484_-	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|64aa|up_1|CP025023.1_2560713_2560905_+	NA	NA|803aa|up_0|CP025023.1_2561142_2563551_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|69aa|down_0|CP025023.1_2563859_2564066_+	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]	NA|333aa|down_1|CP025023.1_2564155_2565154_-	PRK08605, PRK08605, D-lactate dehydrogenase; Validated	NA|385aa|down_2|CP025023.1_2565176_2566331_-	PRK08068, PRK08068, transaminase; Reviewed	NA|265aa|down_3|CP025023.1_2566995_2567790_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|606aa|down_4|CP025023.1_2568149_2569967_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|163aa|down_5|CP025023.1_2570484_2570973_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|234aa|down_6|CP025023.1_2571238_2571940_-	cd13925, RPF, core lysozyme-like domain of resuscitation-promoting factor proteins	NA|352aa|down_7|CP025023.1_2572574_2573630_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|190aa|down_8|CP025023.1_2574024_2574594_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|128aa|down_9|CP025023.1_2574982_2575366_+	NA
