The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP029425	Bradyrhizobium ottawaense strain OO99 chromosome, complete genome	8606328	486070	577394	8606328	transposase,protease	Paenibacillus_phage(20.0%)	83	NA	NA
AWL91237.1|486070_486831_-|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	3.6e-08
AWL91238.1|487013_487421_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91239.1|487857_489063_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	34.8	1.6e-47
AWL91240.1|489069_489444_+	hypothetical protein	NA	A0A291AUP1	Sinorhizobium_phage	50.8	9.3e-10
AWL91241.1|489525_489750_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91242.1|489895_491113_-	acyltransferase	NA	NA	NA	NA	NA
AWL91243.1|493252_493795_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91244.1|494131_494545_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91245.1|494564_494969_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91246.1|495123_495498_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91247.1|495466_496774_-|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	46.2	9.6e-94
AWL91248.1|497044_497410_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91249.1|497508_497787_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91250.1|497783_498320_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91251.1|499461_500364_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91252.1|500360_501911_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91253.1|502053_503061_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
AWL91254.1|503206_504550_-	cytochrome P450	NA	S4VQU1	Pandoravirus	34.1	1.2e-11
AWL91255.1|504549_505395_-	short-chain type dehydrogenase/reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	27.7	8.3e-14
AWL91256.1|505399_505690_-	ferredoxin	NA	NA	NA	NA	NA
AWL91257.1|505691_506981_-	cytochrome P450	NA	NA	NA	NA	NA
AWL91258.1|507064_508270_-	cytochrome P450	NA	NA	NA	NA	NA
AWL91259.1|509338_510098_+|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	4.7e-08
AWL91260.1|510343_511473_-|transposase	IS3-like element ISRj2 family transposase	transposase	U5P429	Shigella_phage	33.7	2.0e-18
AWL91261.1|511756_512326_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91262.1|512362_513712_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
AWL91263.1|513786_514547_-|transposase	IS5-like element ISBj2 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	3.6e-08
AWL91264.1|514658_515189_+	cation transporter	NA	NA	NA	NA	NA
AWL91265.1|515483_515690_-	cold-shock protein	NA	NA	NA	NA	NA
AWL97861.1|515825_516233_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91266.1|516946_517465_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91267.1|517960_518548_+|protease	serine protease	protease	NA	NA	NA	NA
AWL91268.1|518544_519327_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91269.1|520236_521154_-	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
AWL97862.1|521447_522032_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91270.1|522016_522301_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91271.1|522469_523598_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	33.7	6.7e-19
AWL91272.1|523863_524988_-	hypothetical protein	NA	U5N3F3	Enterobacteria_phage	39.7	4.4e-71
AWL91273.1|525000_525321_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AWL91274.1|525317_525803_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91275.1|526116_526347_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AWL91276.1|526288_526519_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91277.1|526487_526760_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91278.1|526794_527061_-	DUF3551 domain-containing protein	NA	NA	NA	NA	NA
AWL91279.1|527487_528282_+	transcriptional regulator	NA	NA	NA	NA	NA
AWL91280.1|529206_530757_+|transposase	IS21-like element ISBj11 family transposase	transposase	NA	NA	NA	NA
AWL91281.1|530717_531563_+	cell division protein ZapE	NA	U5N3V8	Enterobacteria_phage	35.0	1.1e-34
AWL91282.1|542038_542401_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91283.1|542525_542912_-	ectoine synthase	NA	NA	NA	NA	NA
AWL91284.1|543644_543923_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91285.1|544319_544523_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91286.1|544644_545070_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91287.1|545735_546095_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91288.1|546107_546959_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AWL91289.1|546962_547859_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	36.5	9.6e-45
AWL91290.1|547875_548193_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91291.1|548208_548418_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91292.1|548491_548677_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91293.1|549087_550353_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.6	2.9e-10
AWL91294.1|550349_550985_-	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA	NA
AWL91295.1|550981_552136_-	8-amino-7-oxononanoate synthase	NA	G9E4Q1	Emiliania_huxleyi_virus	28.2	1.9e-21
AWL91296.1|552212_552566_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
AWL91297.1|552615_553611_-	biotin synthase	NA	NA	NA	NA	NA
AWL91298.1|553725_554361_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AWL91299.1|554496_554814_+	Dabb family protein	NA	NA	NA	NA	NA
AWL91300.1|554952_556362_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	34.9	3.9e-48
AWL97863.1|556367_556955_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	45.2	7.4e-46
AWL91301.1|556972_557389_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91302.1|557625_558099_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91303.1|558095_558383_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91304.1|558711_561522_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91305.1|562639_563893_+	porin family protein	NA	NA	NA	NA	NA
AWL91306.1|564001_564337_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91307.1|564494_565832_-	glutamine synthetase	NA	NA	NA	NA	NA
AWL91308.1|565831_567118_-	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
AWL91309.1|567114_568095_-	EamA family transporter	NA	NA	NA	NA	NA
AWL91310.1|568147_568963_-	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	NA	NA	NA	NA	NA
AWL91311.1|568959_570018_-	dihydrorhizobitoxine desaturase	NA	NA	NA	NA	NA
AWL91312.1|570583_571344_-|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	1.2e-08
AWL91313.1|571389_573534_-	2-aminoethylphosphonate--pyruvate transaminase	NA	NA	NA	NA	NA
AWL91314.1|573826_574225_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91315.1|575624_575810_-	hypothetical protein	NA	A0A1X9SH55	Bradyrhizobium_phage	63.8	2.1e-10
AWL91316.1|576086_577394_-|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	46.2	9.6e-94
>prophage 2
CP029425	Bradyrhizobium ottawaense strain OO99 chromosome, complete genome	8606328	598200	665156	8606328	transposase,protease	Mycobacterium_phage(22.22%)	60	NA	NA
AWL91328.1|598200_599097_-|protease	YopT-type cysteine protease domain-containing protein	protease	NA	NA	NA	NA
AWL91329.1|599707_600127_-	hypothetical protein	NA	A0A2K8HWN7	Pseudomonas_phage	47.5	7.5e-24
AWL91330.1|600977_602285_+|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	46.2	9.6e-94
AWL91331.1|603781_604627_-	cell division protein ZapE	NA	U5N3V8	Enterobacteria_phage	35.0	1.1e-34
AWL91332.1|604587_606138_-|transposase	IS21-like element ISBj11 family transposase	transposase	NA	NA	NA	NA
AWL91333.1|608918_609101_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91334.1|610429_610663_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91335.1|611130_611430_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91336.1|611859_612873_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	35.5	5.0e-50
AWL91337.1|613064_613298_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91338.1|613711_614077_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91339.1|614427_615207_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91340.1|615234_616545_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91341.1|617301_617865_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91342.1|618688_619912_-	GFA family protein	NA	NA	NA	NA	NA
AWL91343.1|619884_620307_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91344.1|620517_620919_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91345.1|621052_621919_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
AWL91346.1|622436_624254_-	nif-specific transcriptional activator NifA	NA	NA	NA	NA	NA
AWL91347.1|624437_625274_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AWL91348.1|625379_625571_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91349.1|626002_627115_-	nodulation protein Z	NA	NA	NA	NA	NA
AWL91350.1|627280_628927_-	nodulation protein NolO	NA	A0A222YXH1	Synechococcus_phage	31.9	8.0e-45
AWL91351.1|628923_629319_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91352.1|629356_629530_-	NolM protein	NA	NA	NA	NA	NA
AWL91353.1|629562_630351_-	nodulation protein NodJ	NA	NA	NA	NA	NA
AWL91354.1|630354_631275_-	nodulation factor ABC transporter ATP-binding protein NodI	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.1	5.5e-27
AWL91355.1|631276_632986_-	nodulation protein NodU	NA	M1ICZ5	Pelagibacter_phage	29.3	1.2e-27
AWL91356.1|632999_633629_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
AWL91357.1|633555_635013_-	chitooligosaccharide synthase NodC	NA	NA	NA	NA	NA
AWL91358.1|635027_635687_-	chitooligosaccharide deacetylase NodB	NA	NA	NA	NA	NA
AWL97864.1|635683_636316_-	NodA family N-acyltransferase	NA	NA	NA	NA	NA
AWL91359.1|636357_636996_-	NodY	NA	NA	NA	NA	NA
AWL91360.1|637109_638054_+	Nodulation protein D 1	NA	NA	NA	NA	NA
AWL97865.1|638248_638647_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91361.1|638687_639680_+	Nodulation protein D 2	NA	NA	NA	NA	NA
AWL97866.1|640283_640475_+	hypothetical protein	NA	NA	NA	NA	NA
AWL97867.1|640633_641311_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AWL91362.1|641363_642026_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91363.1|642099_642726_+	ABC transporter	NA	NA	NA	NA	NA
AWL91364.1|644203_644566_+	NolY	NA	NA	NA	NA	NA
AWL91365.1|645503_645749_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91366.1|645796_646060_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91367.1|646370_647297_+	porin family protein	NA	NA	NA	NA	NA
AWL91368.1|647644_647770_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91369.1|647934_648297_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91370.1|648268_648541_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91371.1|649027_649744_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
AWL91372.1|650457_650751_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91373.1|651386_652724_+	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
AWL91374.1|653132_653651_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91375.1|653902_654172_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91376.1|654183_654954_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91377.1|655718_656783_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AWL91378.1|657886_658168_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91379.1|658175_658844_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91380.1|659067_660414_-|transposase	IS5 family transposase ISBj5_B	transposase	K4ICS3	Acidithiobacillus_phage	43.4	8.5e-45
AWL91381.1|660655_660934_-	hypothetical protein	NA	NA	NA	NA	NA
AWL97868.1|662557_663472_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91382.1|663848_665156_+|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	46.2	9.6e-94
>prophage 3
CP029425	Bradyrhizobium ottawaense strain OO99 chromosome, complete genome	8606328	685144	753558	8606328	transposase	Paenibacillus_phage(50.0%)	43	NA	NA
AWL91398.1|685144_685904_+|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	3.6e-08
AWL91399.1|685979_687329_+|transposase	IS701-like element ISBj6 family transposase	transposase	NA	NA	NA	NA
AWL91400.1|688920_689148_-	hypothetical protein	NA	NA	NA	NA	NA
AWL97869.1|689156_689612_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91401.1|691240_691489_-	hypothetical protein	NA	A0A1P8CWQ3	Bacillus_phage	48.1	2.7e-05
AWL91402.1|691476_691776_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91403.1|691981_694300_-	S9 family peptidase	NA	NA	NA	NA	NA
AWL91404.1|694669_695002_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91405.1|695820_696063_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91406.1|696084_696345_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91407.1|697489_698281_-	glycosyl hydrolase	NA	NA	NA	NA	NA
AWL91408.1|700914_701106_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91409.1|701123_703577_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
AWL91410.1|704759_705520_-|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	2.1e-08
AWL91411.1|705940_706777_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91412.1|706794_707859_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AWL91413.1|709397_709496_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91414.1|709508_709769_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91415.1|710972_711227_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91416.1|711225_711678_+	GNAT family N-acetyltransferase	NA	C5MKY6	Human_cytomegalovirus	26.9	6.6e-10
AWL91417.1|712609_714367_-	E3 ubiquitin--protein ligase	NA	NA	NA	NA	NA
AWL91418.1|715288_715474_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91419.1|715570_715879_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91420.1|715794_716157_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91421.1|716861_717095_-	DUF2188 domain-containing protein	NA	NA	NA	NA	NA
AWL91422.1|722488_723248_+|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	1.2e-08
AWL91423.1|724807_726166_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AWL91424.1|727216_727963_-	class II aldolase/adducin family protein	NA	NA	NA	NA	NA
AWL91425.1|730364_730607_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91426.1|730711_731005_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91427.1|733729_735253_-	porin	NA	NA	NA	NA	NA
AWL91428.1|735920_737255_-|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	43.6	2.1e-48
AWL97870.1|738043_738874_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
AWL97871.1|740706_741114_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91429.1|741481_743296_-	ABC transporter permease	NA	NA	NA	NA	NA
AWL97872.1|743309_744359_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	36.6	1.6e-27
AWL91430.1|744445_745205_+|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	4.7e-08
AWL97873.1|745327_746437_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AWL97874.1|747085_748273_-	serine hydrolase	NA	NA	NA	NA	NA
AWL91431.1|749293_749521_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91432.1|749524_749725_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91433.1|749915_750164_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91434.1|752007_753558_+|transposase	IS21-like element ISBj11 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP029425	Bradyrhizobium ottawaense strain OO99 chromosome, complete genome	8606328	760482	844621	8606328	transposase,protease	Enterobacteria_phage(40.0%)	55	NA	NA
AWL91438.1|760482_761668_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	40.8	5.2e-46
AWL91439.1|761784_763617_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.7	6.4e-27
AWL97876.1|764164_765307_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
AWL91440.1|766928_767210_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AWL91441.1|767374_768283_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AWL91442.1|768551_769085_-	DUF2285 domain-containing protein	NA	NA	NA	NA	NA
AWL91443.1|769131_769326_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91444.1|769491_769893_-	DUF2285 domain-containing protein	NA	NA	NA	NA	NA
AWL91445.1|770395_770677_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AWL91446.1|771077_771260_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91447.1|774767_775613_-	cell division protein ZapE	NA	U5N3V8	Enterobacteria_phage	35.0	1.1e-34
AWL91448.1|775573_777124_-|transposase	IS21-like element ISBj11 family transposase	transposase	NA	NA	NA	NA
AWL91449.1|777242_777449_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91450.1|779116_782434_+	HD domain-containing protein	NA	NA	NA	NA	NA
AWL91451.1|783263_783506_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91452.1|783502_783925_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91453.1|783907_785482_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91454.1|786746_787391_-	transcriptional regulator	NA	NA	NA	NA	NA
AWL91455.1|788001_789027_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
AWL91456.1|789019_789610_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91457.1|789833_790298_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91458.1|790309_790894_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91459.1|790940_791318_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91460.1|791476_792322_+	KilA-N domain-containing protein	NA	NA	NA	NA	NA
AWL91461.1|792479_793340_+	DUF3800 domain-containing protein	NA	NA	NA	NA	NA
AWL91462.1|793536_794406_-|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
AWL91463.1|794404_794623_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91464.1|795021_795231_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91465.1|795271_796375_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91466.1|797919_798396_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AWL91467.1|798725_800498_-	FAD-binding protein	NA	A0A2P0ZL82	Lactobacillus_phage	28.9	2.3e-29
AWL91468.1|800544_801342_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91469.1|801328_802582_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91470.1|805129_805549_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91471.1|806892_807267_+	Nif11 family protein	NA	NA	NA	NA	NA
AWL91472.1|807515_808862_+	radical SAM family RiPP maturation amino acid epimerase	NA	NA	NA	NA	NA
AWL97877.1|808969_809218_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91473.1|809267_809576_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91474.1|809965_810364_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91475.1|810640_812191_+|transposase	IS21-like element ISBj11 family transposase	transposase	NA	NA	NA	NA
AWL91476.1|812151_812997_+	cell division protein ZapE	NA	U5N3V8	Enterobacteria_phage	35.0	1.1e-34
AWL91477.1|813143_814457_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91478.1|815575_815869_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AWL91479.1|815865_817158_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AWL91480.1|817808_818873_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AWL91481.1|818988_821790_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91482.1|821850_822981_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91483.1|823197_824505_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91484.1|824523_834342_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91485.1|834440_836702_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91486.1|836761_840124_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91487.1|840162_842262_-|protease	serine protease	protease	NA	NA	NA	NA
AWL91488.1|842263_843424_-|protease	serine protease	protease	NA	NA	NA	NA
AWL91489.1|843449_843887_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91490.1|843721_844621_-|protease	serine protease	protease	NA	NA	NA	NA
>prophage 5
CP029425	Bradyrhizobium ottawaense strain OO99 chromosome, complete genome	8606328	851490	919380	8606328	transposase	Mycobacterium_phage(22.22%)	56	NA	NA
AWL91497.1|851490_852534_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AWL97878.1|852623_853813_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	40.4	3.6e-47
AWL91498.1|853874_854144_-	hypothetical protein	NA	NA	NA	NA	NA
AWL97879.1|854576_856331_-	nodulation protein NodU	NA	A0A1B1IVF2	uncultured_Mediterranean_phage	27.2	1.6e-27
AWL91499.1|856831_858025_-	aspartate aminotransferase	NA	NA	NA	NA	NA
AWL97880.1|859704_860973_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91500.1|860969_861656_+	HAD family hydrolase	NA	NA	NA	NA	NA
AWL91501.1|861652_862555_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AWL97881.1|863257_864721_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AWL91502.1|864733_865663_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
AWL91503.1|865834_866983_-	glycosyl hydrolase	NA	NA	NA	NA	NA
AWL91504.1|867230_868433_-	CoA transferase	NA	NA	NA	NA	NA
AWL91505.1|868697_869789_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AWL91506.1|869953_872554_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91507.1|872788_874114_-	MFS transporter	NA	NA	NA	NA	NA
AWL91508.1|874347_874527_+	hypothetical protein	NA	NA	NA	NA	NA
AWL97882.1|874827_875610_+	2,3-dehydroadipyl-CoA hydratase	NA	NA	NA	NA	NA
AWL97883.1|875669_876887_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AWL91509.1|877038_878331_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91510.1|878371_879067_-	ABC transporter ATP-binding protein	NA	M1HRF1	Paramecium_bursaria_Chlorella_virus	31.9	2.3e-09
AWL91511.1|879059_879794_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	25.8	4.8e-10
AWL97884.1|879780_880857_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AWL91512.1|880856_882077_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AWL91513.1|882073_882937_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AWL91514.1|883428_883623_-	transcriptional regulator	NA	NA	NA	NA	NA
AWL91515.1|884785_886561_-	FAD-binding protein	NA	A0A2P0ZL82	Lactobacillus_phage	26.9	7.5e-25
AWL91516.1|886557_887418_-	phosphoenolpyruvate hydrolase family protein	NA	NA	NA	NA	NA
AWL91517.1|887410_888580_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91518.1|888682_888868_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91519.1|889172_889886_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91520.1|889890_891750_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AWL91521.1|891703_892816_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	36.5	2.3e-24
AWL91522.1|892815_893643_-	HAD family hydrolase	NA	NA	NA	NA	NA
AWL91523.1|893635_894406_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AWL91524.1|894402_895344_-	ribokinase	NA	NA	NA	NA	NA
AWL91525.1|895340_896201_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AWL91526.1|896213_897176_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AWL91527.1|897245_898631_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AWL91528.1|898976_899408_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91529.1|900322_900508_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91530.1|900625_900817_-	hypothetical protein	NA	NA	NA	NA	NA
AWL97885.1|900848_901127_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91531.1|901154_901430_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91532.1|902114_903569_-	RNA polymerase sigma-54 factor	NA	NA	NA	NA	NA
AWL91533.1|903812_904572_+|transposase	IS5-like element ISBj2 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	3.6e-08
AWL91534.1|904595_905660_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AWL91535.1|905989_906424_-	hypothetical protein	NA	NA	NA	NA	NA
AWL97886.1|907818_908580_-	transcriptional regulator	NA	NA	NA	NA	NA
AWL91536.1|909704_910319_-	molecular chaperone DnaJ	NA	NA	NA	NA	NA
AWL91537.1|911425_911614_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91538.1|911725_913054_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91539.1|913069_913633_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91540.1|913738_914155_+	SET domain-containing protein	NA	NA	NA	NA	NA
AWL91541.1|914234_914468_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91542.1|914983_916291_+|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	46.2	9.6e-94
AWL91543.1|918072_919380_+|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	46.2	9.6e-94
>prophage 6
CP029425	Bradyrhizobium ottawaense strain OO99 chromosome, complete genome	8606328	928533	989140	8606328	transposase	Acidithiobacillus_phage(40.0%)	50	NA	NA
AWL91549.1|928533_929880_+|transposase	IS5 family transposase ISBj5_B	transposase	K4ICS3	Acidithiobacillus_phage	43.4	8.5e-45
AWL91550.1|929963_930170_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91551.1|930723_931266_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91552.1|933057_933441_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91553.1|933674_933947_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91554.1|934023_934317_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AWL91555.1|934459_935470_+|transposase	IS481 family transposase	transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	64.8	1.1e-126
AWL91556.1|935800_938044_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91557.1|938470_939712_-	cytochrome P450	NA	NA	NA	NA	NA
AWL97888.1|940262_941144_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AWL91558.1|941328_942810_-	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
AWL91559.1|942787_943111_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91560.1|943537_943690_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91561.1|944255_945125_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91562.1|945587_946022_-	VirK protein	NA	NA	NA	NA	NA
AWL91563.1|946620_947688_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91564.1|948888_949065_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91565.1|949281_949662_+	hypothetical protein	NA	NA	NA	NA	NA
AWL97889.1|949701_950391_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AWL91566.1|950417_951872_+	type II and III secretion system protein family protein	NA	NA	NA	NA	NA
AWL91567.1|951882_952545_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91568.1|952740_955056_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91569.1|956127_956457_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
AWL91570.1|960478_961210_-|transposase	transposase	transposase	K4HZD4	Acidithiobacillus_phage	49.7	1.4e-46
AWL97890.1|962677_963301_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91571.1|964199_965750_+|transposase	IS21-like element ISBj11 family transposase	transposase	NA	NA	NA	NA
AWL91572.1|965710_966556_+	cell division protein ZapE	NA	U5N3V8	Enterobacteria_phage	35.0	1.1e-34
AWL91573.1|966669_968181_+|transposase	ISNCY family transposase ISBj12	transposase	NA	NA	NA	NA
AWL91574.1|969003_969210_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91575.1|970044_970446_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91576.1|971448_972513_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AWL97891.1|972613_972835_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91577.1|973220_974309_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AWL91578.1|976084_976843_+|transposase	IS5-like element ISBj2 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	3.6e-08
AWL91579.1|976853_977891_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
AWL91580.1|977887_978709_-	EscT/YscT/HrcT family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AWL91581.1|978719_978995_-	EscS/YscS/HrcS family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AWL91582.1|978997_979663_-	EscR/YscR/HrcR family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AWL91583.1|979655_980777_-	YscQ/HrcQ family type III secretion apparatus protein	NA	NA	NA	NA	NA
AWL91584.1|980773_981310_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91585.1|981285_982641_-	EscN/YscN/HrcN family type III secretion system ATPase	NA	NA	NA	NA	NA
AWL91586.1|982637_983258_-	HrpE/YscL family type III secretion apparatus protein	NA	NA	NA	NA	NA
AWL91587.1|983254_983893_-	nodulation protein NolU	NA	NA	NA	NA	NA
AWL91588.1|983904_984768_-	EscJ/YscJ/HrcJ family type III secretion inner membrane ring protein	NA	NA	NA	NA	NA
AWL91589.1|984776_985289_-	nodulation protein NolB	NA	NA	NA	NA	NA
AWL91590.1|985438_986152_+	nodulation protein NolW	NA	NA	NA	NA	NA
AWL91591.1|986432_986936_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91592.1|986881_987148_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91593.1|987301_987505_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91594.1|988075_989140_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP029425	Bradyrhizobium ottawaense strain OO99 chromosome, complete genome	8606328	1033419	1167736	8606328	transposase	Paenibacillus_phage(17.65%)	100	NA	NA
AWL91640.1|1033419_1034970_-|transposase	IS21-like element ISBj11 family transposase	transposase	NA	NA	NA	NA
AWL91641.1|1035245_1035980_-	host specificity protein	NA	NA	NA	NA	NA
AWL91642.1|1036262_1036637_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91643.1|1036969_1037263_-	ferredoxin III, nif-specific	NA	NA	NA	NA	NA
AWL91644.1|1037273_1037468_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91645.1|1037487_1037952_-	NifX-associated nitrogen fixation protein	NA	NA	NA	NA	NA
AWL91646.1|1037958_1038354_-	nitrogen fixation protein NifX	NA	NA	NA	NA	NA
AWL91647.1|1038350_1039760_-	nitrogenase iron-molybdenum cofactor biosynthesis protein NifN	NA	NA	NA	NA	NA
AWL91648.1|1039769_1041413_-	nitrogenase iron-molybdenum cofactor biosynthesis protein NifE	NA	NA	NA	NA	NA
AWL91649.1|1041505_1043062_-	nitrogenase molybdenum-iron protein subunit beta	NA	NA	NA	NA	NA
AWL91650.1|1043127_1044630_-	nitrogenase molybdenum-iron protein alpha chain	NA	NA	NA	NA	NA
AWL91651.1|1047648_1047843_-	ferredoxin	NA	NA	NA	NA	NA
AWL91652.1|1048381_1049494_-	alanine dehydrogenase	NA	NA	NA	NA	NA
AWL91653.1|1049878_1050925_-	hydrogenase expression/formation protein HypE	NA	NA	NA	NA	NA
AWL91654.1|1050921_1052073_-	hydrogenase formation protein HypD	NA	NA	NA	NA	NA
AWL91655.1|1052060_1053806_-	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA	NA
AWL91656.1|1054089_1055219_-|transposase	IS3-like element ISRj2 family transposase	transposase	U5P429	Shigella_phage	33.7	2.0e-18
AWL91657.1|1056067_1056409_-	hydrogenase maturation nickel metallochaperone HypA	NA	NA	NA	NA	NA
AWL97896.1|1056401_1056680_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91658.1|1056956_1057493_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91659.1|1057584_1058136_-	hydrogenase expression/formation protein	NA	NA	NA	NA	NA
AWL91660.1|1058437_1058833_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91661.1|1059013_1059304_-	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA	NA
AWL91662.1|1059939_1060674_-	Ni/Fe-hydrogenase, b-type cytochrome subunit	NA	NA	NA	NA	NA
AWL91663.1|1060636_1062427_-	nickel-dependent hydrogenase large subunit	NA	NA	NA	NA	NA
AWL91664.1|1062440_1063532_-	uptake hydrogenase small subunit	NA	NA	NA	NA	NA
AWL97897.1|1064177_1064789_-	molybdenum ABC transporter permease	NA	NA	NA	NA	NA
AWL97898.1|1065896_1067213_+	C4-dicarboxylate transporter 1	NA	NA	NA	NA	NA
AWL91665.1|1067335_1068096_-|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	1.0e-07
AWL91666.1|1070115_1072785_+	nodulation protein V	NA	A0A1V0SGX0	Hokovirus	25.0	1.9e-08
AWL91667.1|1072781_1073465_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AWL91668.1|1073546_1073936_+	response regulator	NA	NA	NA	NA	NA
AWL91669.1|1074733_1076041_-|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	46.2	7.4e-94
AWL91670.1|1077342_1078074_+|transposase	transposase	transposase	K4HZD4	Acidithiobacillus_phage	49.7	1.4e-46
AWL91671.1|1078253_1083404_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91672.1|1084138_1084396_-	WGR domain-containing protein	NA	NA	NA	NA	NA
AWL91673.1|1084965_1085187_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91674.1|1085711_1086056_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91675.1|1086606_1086963_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
AWL91676.1|1087016_1088564_+|transposase	IS66 family transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	38.6	6.3e-84
AWL91677.1|1088777_1090076_-	conjugal transfer protein	NA	NA	NA	NA	NA
AWL91678.1|1090049_1091114_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AWL91679.1|1091161_1092958_-	recombinase family protein	NA	NA	NA	NA	NA
AWL91680.1|1093377_1095630_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91681.1|1100687_1101266_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91682.1|1101274_1102006_-|transposase	transposase	transposase	K4HZD4	Acidithiobacillus_phage	49.7	1.4e-46
AWL91683.1|1104181_1104544_+	type II toxin-antitoxin system PrlF family antitoxin	NA	NA	NA	NA	NA
AWL91684.1|1104540_1105044_+	type II toxin-antitoxin system YhaV family toxin	NA	NA	NA	NA	NA
AWL91685.1|1105791_1107147_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
AWL91686.1|1107472_1107661_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91687.1|1107835_1108597_+|transposase	IS6 family transposase	transposase	NA	NA	NA	NA
AWL97899.1|1108604_1108919_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91688.1|1108915_1109206_-	DUF2274 domain-containing protein	NA	NA	NA	NA	NA
AWL91689.1|1109678_1110439_-|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	1.0e-07
AWL91690.1|1110604_1111267_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AWL91691.1|1112435_1114298_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91692.1|1116685_1117750_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AWL91693.1|1117802_1118090_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91694.1|1118077_1118287_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91695.1|1121067_1121508_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91696.1|1121933_1122698_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AWL91697.1|1122694_1123969_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91698.1|1123965_1124847_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91699.1|1124827_1126435_-	ATPase	NA	NA	NA	NA	NA
AWL91700.1|1128791_1129238_+|transposase	transposase	transposase	NA	NA	NA	NA
AWL91701.1|1129639_1130392_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91702.1|1130542_1131034_+	hypothetical protein	NA	NA	NA	NA	NA
AWL97900.1|1131146_1131641_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91703.1|1131994_1132801_-	glycosyl hydrolase	NA	NA	NA	NA	NA
AWL91704.1|1133089_1133800_-|transposase	IS6 family transposase	transposase	NA	NA	NA	NA
AWL97901.1|1134012_1134297_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91705.1|1134238_1134538_+	hypothetical protein	NA	A0A291AUP1	Sinorhizobium_phage	34.7	4.1e-08
AWL91706.1|1134545_1134887_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91707.1|1135166_1135370_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91708.1|1135676_1136057_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91709.1|1136085_1137624_-	DUF1521 domain-containing protein	NA	NA	NA	NA	NA
AWL91710.1|1137764_1138133_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91711.1|1138475_1139236_-|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	4.7e-08
AWL91712.1|1139669_1139861_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91713.1|1140197_1141004_-	EAL domain-containing protein	NA	NA	NA	NA	NA
AWL91714.1|1141278_1142085_+	hypothetical protein	NA	A0A023NHS3	Nitrincola_phage	30.1	1.4e-05
AWL91715.1|1147063_1147909_-	cell division protein ZapE	NA	U5N3V8	Enterobacteria_phage	35.0	1.1e-34
AWL91716.1|1147869_1149420_-|transposase	IS21-like element ISBj11 family transposase	transposase	NA	NA	NA	NA
AWL91717.1|1149849_1150065_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91718.1|1150654_1150990_-	hypothetical protein	NA	NA	NA	NA	NA
AWL97902.1|1151011_1151200_-	plasmid maintenance system killer protein	NA	NA	NA	NA	NA
AWL91719.1|1151498_1151735_+	hypothetical protein	NA	NA	NA	NA	NA
AWL97903.1|1151764_1152082_+	hypothetical protein	NA	NA	NA	NA	NA
AWL97904.1|1152099_1152510_-	hypothetical protein	NA	A0A1X9SGU9	Bradyrhizobium_phage	36.6	1.1e-06
AWL91720.1|1152886_1153243_+	hypothetical protein	NA	NA	NA	NA	NA
AWL97905.1|1154083_1154317_+	cold shock domain-containing protein	NA	NA	NA	NA	NA
AWL91721.1|1154637_1156464_-	glutamine--fructose-6-phosphate aminotransferase	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	40.0	1.2e-105
AWL91722.1|1157763_1158882_+	GDP-mannose 4,6-dehydratase	NA	M1HGM9	Acanthocystis_turfacea_Chlorella_virus	64.7	3.8e-131
AWL91723.1|1158853_1159861_+	GDP-L-fucose synthase	NA	M1I5W5	Acanthocystis_turfacea_Chlorella_virus	51.3	4.1e-84
AWL91724.1|1160135_1163252_-	multidrug efflux protein	NA	NA	NA	NA	NA
AWL91725.1|1164031_1164142_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91726.1|1164122_1164530_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91727.1|1164487_1165468_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	NA	NA	NA	NA
AWL91728.1|1165618_1166152_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91729.1|1166428_1167736_-|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	46.2	9.6e-94
>prophage 8
CP029425	Bradyrhizobium ottawaense strain OO99 chromosome, complete genome	8606328	1192647	1218296	8606328	transposase	Paenibacillus_phage(25.0%)	20	NA	NA
AWL91747.1|1192647_1193712_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AWL91748.1|1193754_1193943_-	hypothetical protein	NA	NA	NA	NA	NA
AWL97907.1|1195119_1196325_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AWL91749.1|1196912_1197311_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91750.1|1197633_1198017_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91751.1|1198324_1198717_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91752.1|1198963_1199724_-|transposase	IS5-like element ISBj2 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	3.6e-08
AWL91753.1|1199880_1200945_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AWL91754.1|1201435_1202565_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	33.7	1.1e-18
AWL91755.1|1204585_1204945_+	methylamine utilization protein	NA	NA	NA	NA	NA
AWL91756.1|1204949_1206011_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91757.1|1206449_1207472_-	tryptophan tryptophylquinone biosynthesis enzyme MauG	NA	NA	NA	NA	NA
AWL91758.1|1207918_1209265_-|transposase	IS5 family transposase ISBj5_B	transposase	K4ICS3	Acidithiobacillus_phage	43.4	8.5e-45
AWL97908.1|1209404_1212239_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	35.0	6.9e-12
AWL91759.1|1212483_1212645_-	Flp family type IVb pilin	NA	NA	NA	NA	NA
AWL97909.1|1213133_1213589_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91760.1|1214253_1214577_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91761.1|1214915_1215119_+	hypothetical protein	NA	NA	NA	NA	NA
AWL91762.1|1215883_1216117_-	hypothetical protein	NA	NA	NA	NA	NA
AWL91763.1|1217243_1218296_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP029425	Bradyrhizobium ottawaense strain OO99 chromosome, complete genome	8606328	1591263	1598419	8606328		Bacillus_phage(16.67%)	6	NA	NA
AWL92053.1|1591263_1593060_+	glucan ABC transporter ATP-binding protein/ permease	NA	W8CYL7	Bacillus_phage	25.4	1.2e-33
AWL92054.1|1593249_1594737_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	36.5	2.5e-29
AWL92055.1|1594925_1596611_+	long-chain-fatty-acid--CoA ligase	NA	Q75ZG1	Hepacivirus	26.2	1.2e-43
AWL92056.1|1596626_1597181_+	DUF924 domain-containing protein	NA	A0A1V0SIY0	Klosneuvirus	33.3	3.1e-17
AWL92057.1|1597289_1597775_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	46.6	5.2e-21
AWL92058.1|1597954_1598419_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	58.3	1.1e-44
>prophage 10
CP029425	Bradyrhizobium ottawaense strain OO99 chromosome, complete genome	8606328	3218618	3266706	8606328	transposase	Acidithiobacillus_phage(20.0%)	36	NA	NA
AWL93398.1|3218618_3219683_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AWL93399.1|3222627_3224379_+	gamma-glutamyltranspeptidase	NA	NA	NA	NA	NA
AWL98091.1|3224441_3225239_+	hypothetical protein	NA	NA	NA	NA	NA
AWL93400.1|3225229_3226276_+	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
AWL93401.1|3227759_3228110_-	hypothetical protein	NA	NA	NA	NA	NA
AWL93402.1|3228283_3228748_+	hypothetical protein	NA	NA	NA	NA	NA
AWL93403.1|3230568_3232110_-|transposase	IS21 family transposase ISFK1	transposase	K4I413	Acidithiobacillus_phage	44.3	2.0e-127
AWL93404.1|3234564_3235698_+	monooxygenase	NA	A0A2K9L3K5	Tupanvirus	24.4	3.1e-08
AWL93405.1|3235747_3235963_+	hypothetical protein	NA	NA	NA	NA	NA
AWL98092.1|3236670_3236835_+	hypothetical protein	NA	NA	NA	NA	NA
AWL93406.1|3236835_3237165_+	hypothetical protein	NA	NA	NA	NA	NA
AWL93407.1|3238748_3239204_-	hypothetical protein	NA	NA	NA	NA	NA
AWL93408.1|3239376_3239781_+	hypothetical protein	NA	NA	NA	NA	NA
AWL93409.1|3239752_3240283_+	hypothetical protein	NA	NA	NA	NA	NA
AWL93410.1|3240632_3241034_+	hypothetical protein	NA	NA	NA	NA	NA
AWL93411.1|3241252_3241795_+	hypothetical protein	NA	NA	NA	NA	NA
AWL93412.1|3243592_3244456_+|transposase	transposase	transposase	A0A059NT77	Lactococcus_phage	37.2	8.1e-33
AWL93413.1|3244460_3245498_-	hypothetical protein	NA	NA	NA	NA	NA
AWL93414.1|3245460_3246129_-	chromosome partitioning protein ParA	NA	A2I303	Vibrio_virus	32.7	1.5e-10
AWL98093.1|3246572_3247409_+	porin family protein	NA	NA	NA	NA	NA
AWL93415.1|3247341_3248673_+	group II intron reverse transcriptase/maturase	NA	NA	NA	NA	NA
AWL93416.1|3251147_3252221_-	hypothetical protein	NA	NA	NA	NA	NA
AWL93417.1|3253335_3254001_-	hypothetical protein	NA	NA	NA	NA	NA
AWL93418.1|3254467_3255352_+	hypothetical protein	NA	NA	NA	NA	NA
AWL93419.1|3255371_3255701_-|transposase	transposase	transposase	NA	NA	NA	NA
AWL93420.1|3256025_3256310_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AWL98094.1|3257943_3258297_+	hypothetical protein	NA	NA	NA	NA	NA
AWL93421.1|3258760_3259213_-	hypothetical protein	NA	NA	NA	NA	NA
AWL93422.1|3259332_3259956_-	VOC family protein	NA	NA	NA	NA	NA
AWL93423.1|3259968_3260817_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AWL93424.1|3260813_3261692_-	KR domain-containing protein	NA	NA	NA	NA	NA
AWL93425.1|3261796_3262471_-	L,D-transpeptidase	NA	NA	NA	NA	NA
AWL93426.1|3262603_3263212_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AWL93427.1|3263434_3264061_+	DUF308 domain-containing protein	NA	NA	NA	NA	NA
AWL93428.1|3264318_3265383_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AWL93429.1|3265941_3266706_+|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	49.0	4.7e-24
>prophage 11
CP029425	Bradyrhizobium ottawaense strain OO99 chromosome, complete genome	8606328	6050656	6113423	8606328	tail,integrase,transposase,protease	Enterobacteria_phage(12.5%)	60	6042753:6042768	6060159:6060174
6042753:6042768	attL	GCCAAGTTCGCGGTGA	NA	NA	NA	NA
AWL95754.1|6050656_6051544_-|tail	phage tail tape measure protein	tail	Q687F3	Enterobacteria_phage	33.1	1.0e-09
AWL95755.1|6051547_6052213_-	hypothetical protein	NA	NA	NA	NA	NA
AWL95756.1|6052209_6052461_-	hypothetical protein	NA	NA	NA	NA	NA
AWL95757.1|6052467_6053205_-	hypothetical protein	NA	NA	NA	NA	NA
AWL95758.1|6053242_6053437_-	hypothetical protein	NA	NA	NA	NA	NA
AWL95759.1|6053566_6053779_-	hypothetical protein	NA	NA	NA	NA	NA
AWL95760.1|6054282_6055704_-|integrase	site-specific integrase	integrase	A0A2H4J5F8	uncultured_Caudovirales_phage	25.4	7.2e-18
AWL95761.1|6056001_6056937_+	porin family protein	NA	O11861	Bartonella_henselae_phage	26.1	2.9e-07
AWL95762.1|6056966_6057638_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AWL95763.1|6057710_6058685_+	steryl acetyl hydrolase	NA	NA	NA	NA	NA
AWL95764.1|6058805_6059045_-	hypothetical protein	NA	NA	NA	NA	NA
AWL98333.1|6059657_6060629_+	KR domain-containing protein	NA	NA	NA	NA	NA
6060159:6060174	attR	GCCAAGTTCGCGGTGA	NA	NA	NA	NA
AWL95765.1|6060880_6061996_+	dienelactone hydrolase	NA	NA	NA	NA	NA
AWL95766.1|6062107_6062665_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AWL98334.1|6063016_6064573_+	porin	NA	NA	NA	NA	NA
AWL95767.1|6065508_6065706_-	hypothetical protein	NA	NA	NA	NA	NA
AWL95768.1|6065903_6066845_-	amidase	NA	A0A1V0S8X7	Catovirus	32.3	1.2e-10
AWL95769.1|6066909_6067776_+	YdcF family protein	NA	NA	NA	NA	NA
AWL95770.1|6067831_6068614_+	hypothetical protein	NA	NA	NA	NA	NA
AWL95771.1|6068623_6069802_+	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AWL95772.1|6070005_6071025_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AWL95773.1|6071285_6072482_-	monooxygenase	NA	NA	NA	NA	NA
AWL95774.1|6072566_6073106_+	transcriptional regulator	NA	NA	NA	NA	NA
AWL95775.1|6073074_6074334_-	O-antigen ligase domain-containing protein	NA	NA	NA	NA	NA
AWL95776.1|6074402_6075992_-	undecaprenyl-phosphate glucose phosphotransferase	NA	NA	NA	NA	NA
AWL95777.1|6076070_6077204_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AWL95778.1|6077409_6079746_+	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AWL95779.1|6079927_6081109_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AWL95780.1|6081239_6082283_+	polysaccharide deacetylase	NA	NA	NA	NA	NA
AWL95781.1|6082266_6082488_-	DUF2842 domain-containing protein	NA	NA	NA	NA	NA
AWL95782.1|6082580_6083663_+	heme A synthase	NA	NA	NA	NA	NA
AWL95783.1|6083663_6084008_-	hypothetical protein	NA	NA	NA	NA	NA
AWL95784.1|6084127_6085408_-	O-acetylhomoserine aminocarboxypropyltransferase	NA	A0A0B5JD48	Pandoravirus	26.5	1.8e-15
AWL95785.1|6085557_6086142_-	CoA-binding protein	NA	NA	NA	NA	NA
AWL95786.1|6086247_6087072_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AWL95787.1|6087157_6087586_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AWL95788.1|6087744_6088209_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
AWL95789.1|6088210_6088690_+	30S ribosomal protein S9	NA	NA	NA	NA	NA
AWL95790.1|6088919_6090140_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	33.0	8.3e-15
AWL95791.1|6090200_6090440_+	hypothetical protein	NA	NA	NA	NA	NA
AWL95792.1|6090541_6090838_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AWL95793.1|6090899_6092036_-	AI-2E family transporter	NA	NA	NA	NA	NA
AWL95794.1|6092177_6092876_+	hypothetical protein	NA	NA	NA	NA	NA
AWL98335.1|6092925_6093741_+	gamma-glutamyl-gamma-aminobutyrate hydrolase	NA	NA	NA	NA	NA
AWL98336.1|6094863_6095100_+	hypothetical protein	NA	NA	NA	NA	NA
AWL95795.1|6095400_6095940_+	sugar transporter	NA	NA	NA	NA	NA
AWL95796.1|6095936_6097541_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AWL95797.1|6098071_6098605_+|transposase	transposase	transposase	NA	NA	NA	NA
AWL95798.1|6098762_6099740_-	transcriptional regulator	NA	NA	NA	NA	NA
AWL95799.1|6099893_6100151_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AWL95800.1|6100332_6101751_+	nodulation protein NfeD	NA	NA	NA	NA	NA
AWL95801.1|6101747_6102509_+	slipin family protein	NA	NA	NA	NA	NA
AWL95802.1|6102590_6103727_+	asparaginase	NA	NA	NA	NA	NA
AWL95803.1|6103811_6105221_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AWL95804.1|6105372_6105711_-	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
AWL95805.1|6106092_6107592_+	bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AWL95806.1|6107650_6108979_-	copper oxidase	NA	NA	NA	NA	NA
AWL95807.1|6109391_6110753_+	trigger factor	NA	NA	NA	NA	NA
AWL95808.1|6111058_6111694_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	62.1	3.6e-62
AWL95809.1|6112151_6113423_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	58.8	8.4e-135
>prophage 12
CP029425	Bradyrhizobium ottawaense strain OO99 chromosome, complete genome	8606328	6320123	6330246	8606328	tRNA	uncultured_Mediterranean_phage(88.89%)	12	NA	NA
AWL95968.1|6320123_6321152_+	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	42.0	1.2e-22
AWL95969.1|6321148_6321988_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	36.7	3.3e-31
AWL95970.1|6321988_6322774_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	49.7	9.3e-44
AWL95971.1|6322941_6323175_+	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	63.6	5.4e-08
AWL95972.1|6323263_6323779_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
AWL95973.1|6323775_6324591_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	47.6	4.2e-55
AWL95974.1|6324728_6326060_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	49.4	1.6e-96
AWL98355.1|6326154_6326517_+	hypothetical protein	NA	NA	NA	NA	NA
AWL95975.1|6326614_6327382_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	38.0	3.1e-36
AWL95976.1|6327485_6327857_-	response regulator	NA	NA	NA	NA	NA
AWL95977.1|6328085_6328736_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	50.6	4.1e-29
AWL95978.1|6328845_6330246_+	LysM peptidoglycan-binding domain-containing protein	NA	Q8SBN9	Clostridium_phage	41.8	8.3e-19
>prophage 13
CP029425	Bradyrhizobium ottawaense strain OO99 chromosome, complete genome	8606328	8136551	8146138	8606328		Escherichia_phage(42.86%)	8	NA	NA
AWL97436.1|8136551_8138744_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	39.1	1.3e-13
AWL97437.1|8138917_8140609_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	29.2	2.2e-13
AWL97438.1|8140777_8142052_-	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	42.2	1.7e-74
AWL97439.1|8142048_8142831_-	Hyi family protein	NA	NA	NA	NA	NA
AWL97440.1|8142845_8143763_-	3-hydroxyisobutyrate dehydrogenase	NA	A0A077SLF7	Escherichia_phage	48.3	2.4e-67
AWL97441.1|8143852_8144554_+	aldolase	NA	A0A077SK32	Escherichia_phage	47.8	2.0e-45
AWL97442.1|8144718_8145423_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	24.8	1.7e-12
AWL97443.1|8145406_8146138_-	ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	28.6	3.0e-12
