assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002251005.2_ASM225100v2	CP024096	Bacillus cytotoxicus strain CH_39 chromosome, complete genome	1	1597621-1597749	1	CRISPRCasFinder	no		cas14j,cas3,csa3,DinG,cas2,cas1,cas9,cas4,cas5,cas7,cas8b2,cas6,DEDDh,WYL	Orphan	AACTAGGGTGGTACCGCGATGTTTTAATCGTCCCTACG	38	0	0	NA	NA	NA	1	1	Orphan	cas14j,cas3,csa3,DinG,cas2,cas1,cas9,cas4,cas5,cas7,cas8b2,cas6,DEDDh,WYL,TnsE_C	NA|63aa|up_8|CP024096.1_1583775_1583964_-,NA|155aa|up_6|CP024096.1_1585964_1586429_-,NA	NA|411aa|up_9|CP024096.1_1582401_1583634_-	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|63aa|up_8|CP024096.1_1583775_1583964_-	NA	NA|459aa|up_7|CP024096.1_1584532_1585909_+	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|155aa|up_6|CP024096.1_1585964_1586429_-	NA	NA|420aa|up_5|CP024096.1_1588246_1589506_+	TIGR03156, GTP_HflX, GTP-binding protein HflX	NA|523aa|up_4|CP024096.1_1589837_1591406_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|547aa|up_3|CP024096.1_1591508_1593149_-	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold	NA|403aa|up_2|CP024096.1_1593366_1594575_+	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters	NA|306aa|up_1|CP024096.1_1594590_1595508_+	TIGR01139, Cysteine_synthase, cysteine synthase A	NA|545aa|up_0|CP024096.1_1595577_1597212_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|446aa|down_0|CP024096.1_1597852_1599190_+	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain	NA|89aa|down_1|CP024096.1_1599461_1599728_+	pfam08765, Mor, Mor transcription activator family	NA|213aa|down_2|CP024096.1_1599867_1600506_+	cd16342, FusC_FusB, Fusidic acid resistance protein (FusC/FusB)	NA|464aa|down_3|CP024096.1_1600567_1601959_-	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	NA|179aa|down_4|CP024096.1_1602081_1602618_-	pfam01625, PMSR, Peptide methionine sulfoxide reductase	NA|300aa|down_5|CP024096.1_1603536_1604436_+	PRK12479, PRK12479, branched-chain-amino-acid transaminase	NA|33aa|down_6|CP024096.1_1604933_1605032_+	pfam12323, HTH_OrfB_IS605, Helix-turn-helix domain	NA|558aa|down_7|CP024096.1_1605366_1607040_+	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional	NA|421aa|down_8|CP024096.1_1607073_1608336_+	PRK08639, PRK08639, threonine dehydratase; Validated	NA|240aa|down_9|CP024096.1_1608557_1609277_+	pfam04474, DUF554, Protein of unknown function (DUF554)
GCA_002251005.2_ASM225100v2	CP024096	Bacillus cytotoxicus strain CH_39 chromosome, complete genome	2	2100402-2101095	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas9	cas14j,cas3,csa3,DinG,cas2,cas1,cas9,cas4,cas5,cas7,cas8b2,cas6,DEDDh,WYL	Type II-A,Type II-C, Type II-B,Type II-B, or Type II-C?	GCCATAATTCCTCTTTAAATCTTGGTATGATATGAT,GCCATAATTCCTCTTTAAATCTTGGTATGATATGAT,GCCATAATTCCTCTTTAAATCTTGGTATGATATGAT	36,36,36	0	0	NA	NA	NA:NA:NA	10,10,10	10	TypeII-A,TypeII-C,TypeII-B,TypeII-B,orTypeII-C?	cas14j,cas3,csa3,DinG,cas2,cas1,cas9,cas4,cas5,cas7,cas8b2,cas6,DEDDh,WYL,TnsE_C	NA|137aa|up_5|CP024096.1_2094932_2095343_-,NA|178aa|up_3|CP024096.1_2096514_2097048_-,NA|101aa|up_2|CP024096.1_2097123_2097426_-,NA|56aa|down_8|CP024096.1_2112010_2112178_-	NA|193aa|up_9|CP024096.1_2090911_2091490_-	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|52aa|up_8|CP024096.1_2091760_2091916_-	pfam07561, DUF1540, Domain of Unknown Function (DUF1540)	NA|428aa|up_7|CP024096.1_2091988_2093272_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|412aa|up_6|CP024096.1_2093543_2094779_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|137aa|up_5|CP024096.1_2094932_2095343_-	NA	NA|335aa|up_4|CP024096.1_2095497_2096502_-	pfam12395, DUF3658, Protein of unknown function	NA|178aa|up_3|CP024096.1_2096514_2097048_-	NA	NA|101aa|up_2|CP024096.1_2097123_2097426_-	NA	NA|355aa|up_1|CP024096.1_2098730_2099795_-	pfam18801, RapH_N, response regulator aspartate phosphatase H, N terminal	NA|55aa|up_0|CP024096.1_2100133_2100298_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	cas2|103aa|down_0|CP024096.1_2101249_2101558_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|301aa|down_1|CP024096.1_2101562_2102465_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1078aa|down_2|CP024096.1_2102454_2105688_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|254aa|down_3|CP024096.1_2105999_2106761_-	pfam13105, DUF3959, Protein of unknown function (DUF3959)	NA|140aa|down_4|CP024096.1_2107017_2107437_-	pfam14184, YrvL, Regulatory protein YrvL	NA|782aa|down_5|CP024096.1_2107474_2109820_-	pfam13032, DUF3893, Domain of unknown function (DUF3893)	NA|228aa|down_6|CP024096.1_2110074_2110758_-	cd19364, TenA_C_BsTenA-like, TenA_C proteins similar to Bacillus subtilis TenA	NA|235aa|down_7|CP024096.1_2111076_2111781_-	PRK10484, PRK10484, putative transporter; Provisional	NA|56aa|down_8|CP024096.1_2112010_2112178_-	NA	NA|167aa|down_9|CP024096.1_2112262_2112763_-	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase
GCA_002251005.2_ASM225100v2	CP024096	Bacillus cytotoxicus strain CH_39 chromosome, complete genome	3	2228784-2229271	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas4,cas3,cas5,cas7,cas8b2,cas6	cas14j,cas3,csa3,DinG,cas2,cas1,cas9,cas4,cas5,cas7,cas8b2,cas6,DEDDh,WYL	Unclear	CTTTATATCCCACTACGTTCAGATAAAAC,CTTTATATCCCACTACGTTCAGATAAAAC,CTTTATATCCCACTACGTTCAGATAAAAC	29,29,29	1	1	2229141-2229177	CP024096.1_811948-811984	I-A:I-A:I-A	7,7,6	7	Unclear	cas14j,cas3,csa3,DinG,cas2,cas1,cas9,cas4,cas5,cas7,cas8b2,cas6,DEDDh,WYL,TnsE_C	NA,NA|115aa|down_8|CP024096.1_2240512_2240857_+	NA|90aa|up_9|CP024096.1_2212236_2212506_-	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|702aa|up_8|CP024096.1_2212518_2214624_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|658aa|up_7|CP024096.1_2215259_2217233_-	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|542aa|up_6|CP024096.1_2217717_2219343_-	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional	NA|359aa|up_5|CP024096.1_2219642_2220719_-	PRK12595, PRK12595, bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed	NA|1177aa|up_4|CP024096.1_2221486_2225017_-	cd01406, SIR2-like, Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation	NA|146aa|up_3|CP024096.1_2225176_2225614_+	pfam10710, DUF2512, Protein of unknown function (DUF2512)	NA|446aa|up_2|CP024096.1_2225660_2226998_-	PRK02991, PRK02991, D-serine dehydratase; Provisional	NA|128aa|up_1|CP024096.1_2227296_2227680_-	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|85aa|up_0|CP024096.1_2228298_2228553_-	pfam01548, DEDD_Tnp_IS110, Transposase	cas2|88aa|down_0|CP024096.1_2229494_2229758_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas4|166aa|down_1|CP024096.1_2230738_2231236_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|742aa|down_2|CP024096.1_2231298_2233524_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|233aa|down_3|CP024096.1_2233577_2234276_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|298aa|down_4|CP024096.1_2234272_2235166_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8b2|583aa|down_5|CP024096.1_2235158_2236907_-	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas6|234aa|down_6|CP024096.1_2236906_2237608_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	NA|109aa|down_7|CP024096.1_2239844_2240171_-	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]	NA|115aa|down_8|CP024096.1_2240512_2240857_+	NA	NA|110aa|down_9|CP024096.1_2240981_2241311_-	PRK07667, PRK07667, uridine kinase; Provisional
GCA_002251005.2_ASM225100v2	CP024096	Bacillus cytotoxicus strain CH_39 chromosome, complete genome	4	2238943-2239558	4,3,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas4,cas3,cas5,cas7,cas8b2,cas6	cas14j,cas3,csa3,DinG,cas2,cas1,cas9,cas4,cas5,cas7,cas8b2,cas6,DEDDh,WYL	Unclear	CTTTATATCCCACTACGTTCAGATAAAAC,CTTTATATCCCACTACGTTCAGATAAAAC,CTTTATATCCCACTACGTTCAGATAAAAC	29,29,29	2	2	2239363-2239398|2239364-2239399	CP024096.1_3185302-3185267|CP024096.1_3185302-3185267	I-A:I-A:I-A	9,9,8	9	Unclear	cas14j,cas3,csa3,DinG,cas2,cas1,cas9,cas4,cas5,cas7,cas8b2,cas6,DEDDh,WYL,TnsE_C	NA,NA|115aa|down_1|CP024096.1_2240512_2240857_+,NA|82aa|down_4|CP024096.1_2242225_2242471_+	NA|446aa|up_9|CP024096.1_2225660_2226998_-	PRK02991, PRK02991, D-serine dehydratase; Provisional	NA|128aa|up_8|CP024096.1_2227296_2227680_-	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|85aa|up_7|CP024096.1_2228298_2228553_-	pfam01548, DEDD_Tnp_IS110, Transposase	cas2|88aa|up_6|CP024096.1_2229494_2229758_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas4|166aa|up_5|CP024096.1_2230738_2231236_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|742aa|up_4|CP024096.1_2231298_2233524_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|233aa|up_3|CP024096.1_2233577_2234276_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|298aa|up_2|CP024096.1_2234272_2235166_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8b2|583aa|up_1|CP024096.1_2235158_2236907_-	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas6|234aa|up_0|CP024096.1_2236906_2237608_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	NA|109aa|down_0|CP024096.1_2239844_2240171_-	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]	NA|115aa|down_1|CP024096.1_2240512_2240857_+	NA	NA|110aa|down_2|CP024096.1_2240981_2241311_-	PRK07667, PRK07667, uridine kinase; Provisional	NA|189aa|down_3|CP024096.1_2241289_2241856_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|82aa|down_4|CP024096.1_2242225_2242471_+	NA	NA|179aa|down_5|CP024096.1_2242708_2243245_-	pfam11193, DUF2812, Protein of unknown function (DUF2812)	NA|108aa|down_6|CP024096.1_2243246_2243570_-	TIGR03433, padR_acidobact, transcriptional regulator, Acidobacterial, PadR-family	NA|328aa|down_7|CP024096.1_2244171_2245155_-	pfam13170, DUF4003, Protein of unknown function (DUF4003)	NA|155aa|down_8|CP024096.1_2245238_2245703_-	cd04688, Nudix_Hydrolase_29, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|82aa|down_9|CP024096.1_2246061_2246307_-	pfam00144, Beta-lactamase, Beta-lactamase
