The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP022089	Shewanella sp. FDAARGOS_354 chromosome, complete genome	5031863	95999	145977	5031863	transposase,tRNA	Stx2-converting_phage(20.0%)	49	NA	NA
ASF13675.1|95999_96737_+|tRNA	methionyl-tRNA formyltransferase	tRNA	NA	NA	NA	NA
ASF13676.1|96736_97699_+	hypothetical protein	NA	NA	NA	NA	NA
ASF13677.2|97700_98894_+	hypothetical protein	NA	NA	NA	NA	NA
ASF13678.2|98996_100289_+	hypothetical protein	NA	NA	NA	NA	NA
ASF13679.2|100269_100812_+	acyltransferase	NA	NA	NA	NA	NA
ASF13680.1|100813_102724_+	asparagine synthase (glutamine-hydrolyzing)	NA	F2Y1H0	Organic_Lake_phycodnavirus	29.9	1.9e-37
ASF13681.1|102710_103799_+	hypothetical protein	NA	NA	NA	NA	NA
ASF13682.1|103867_104605_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
ASF13683.1|104846_105902_+	hypothetical protein	NA	NA	NA	NA	NA
ASF13684.1|105858_106776_+	aminoglycoside N(3)-acetyltransferase	NA	NA	NA	NA	NA
ASF13685.1|106776_108909_+	dehydrogenase	NA	NA	NA	NA	NA
ASF13686.1|108911_110552_+	heparinase	NA	NA	NA	NA	NA
ASF13687.1|110562_111735_+	glycosyltransferase WbuB	NA	NA	NA	NA	NA
ASF13688.1|111727_112684_+	UDP-glucose 4-epimerase	NA	NA	NA	NA	NA
ASF13689.1|112693_113242_+	sugar transferase	NA	NA	NA	NA	NA
ASF13690.1|113734_115675_+	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	25.2	3.0e-19
ASF13691.1|115778_117131_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
ASF13692.1|117526_117943_-	DUF86 domain-containing protein	NA	NA	NA	NA	NA
ASF13693.1|117935_118358_-	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA	NA
ASF13694.1|118787_119048_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
ASF13695.1|119049_119397_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
ASF13696.1|119608_120817_+	molecular chaperone DnaJ	NA	NA	NA	NA	NA
ASF13697.1|120946_121129_-	hypothetical protein	NA	NA	NA	NA	NA
ASF13698.1|121596_122013_-	toxin	NA	NA	NA	NA	NA
ASF13699.1|122003_122318_-	antitoxin of toxin-antitoxin stability system	NA	NA	NA	NA	NA
ASF13700.1|122393_122612_+	hypothetical protein	NA	NA	NA	NA	NA
ASF13701.1|122615_123050_+	hypothetical protein	NA	A0A218MNE7	uncultured_virus	43.2	7.0e-25
ASF13702.1|123165_123405_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
ASF13703.1|123394_123679_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
ASF13704.1|123991_124291_+	type II toxin-antitoxin system HigB family toxin	NA	A0A0P0ZE17	Stx2-converting_phage	50.0	2.2e-14
ASF13705.1|124301_124670_+	DNA-binding protein	NA	A0A0P0ZCT8	Stx2-converting_phage	47.4	6.8e-21
ASF13706.1|124748_125153_-|transposase	IS200/IS605 family transposase	transposase	I4AZM1	Saccharomonospora_phage	61.4	2.0e-42
ASF13707.1|125199_126294_+|transposase	transposase	transposase	Q19ZT4	Mycobacterium_virus	30.2	1.7e-27
AVL27089.1|126967_128146_-	hypothetical protein	NA	NA	NA	NA	NA
AVL27205.1|128148_131520_-	hypothetical protein	NA	NA	NA	NA	NA
ASF13708.1|131591_132245_-	DUF4194 domain-containing protein	NA	NA	NA	NA	NA
ASF13709.1|132247_133717_-	DUF3375 domain-containing protein	NA	NA	NA	NA	NA
ASF13710.1|133713_134592_-	WYL domain-containing protein	NA	NA	NA	NA	NA
ASF13712.1|135863_136181_+	transcriptional regulator	NA	NA	NA	NA	NA
ASF13713.1|138464_138710_+	plasmid maintenance protein CcdB	NA	NA	NA	NA	NA
ASF13714.1|138728_139823_-|transposase	transposase	transposase	Q19ZT4	Mycobacterium_virus	29.4	1.7e-27
ASF13715.1|139869_140274_+|transposase	IS200/IS605 family transposase	transposase	I4AZM1	Saccharomonospora_phage	62.1	1.5e-42
ASF13716.1|140380_140653_+	plasmid maintenance protein CcdB	NA	NA	NA	NA	NA
ASF13717.1|141007_142375_+	phosphatidylinositol kinase	NA	NA	NA	NA	NA
ASF13718.1|142371_142752_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
ASF13719.1|142886_144095_+|transposase	IS4-like element IS10A family transposase	transposase	Q9E8P4	Bluetongue_virus	71.4	3.1e-171
ASF13720.1|144252_144594_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA	NA
ASF13721.1|144590_144845_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA	NA
ASF13722.1|145077_145977_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP022089	Shewanella sp. FDAARGOS_354 chromosome, complete genome	5031863	155158	224490	5031863	transposase,tRNA,integrase	Bluetongue_virus(15.38%)	52	149907:149922	168086:168101
149907:149922	attL	TCAATGTATTGCCAAA	NA	NA	NA	NA
ASF13727.1|155158_156769_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
ASF13728.1|156768_157140_-	hypothetical protein	NA	NA	NA	NA	NA
ASF13729.2|157384_158635_+|transposase	IS4 family transposase IS10A	transposase	Q9E8P4	Bluetongue_virus	71.4	4.2e-171
ASF13730.1|159170_159545_-	hypothetical protein	NA	NA	NA	NA	NA
ASF13731.1|159872_160505_-	hypothetical protein	NA	NA	NA	NA	NA
ASF13732.1|160926_161163_+	hypothetical protein	NA	NA	NA	NA	NA
ASF13733.1|161457_162669_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	48.1	1.4e-51
ASF13734.1|162839_164051_+	NnrS family protein	NA	NA	NA	NA	NA
ASF13735.1|164034_165444_+	ammonia-forming cytochrome c nitrite reductase subunit c552	NA	NA	NA	NA	NA
ASF13736.1|166053_167259_-|transposase	IS256-like element ISSod5 family transposase	transposase	A0A218MNI5	uncultured_virus	75.0	3.4e-77
ASF13737.1|167327_167531_-	hypothetical protein	NA	NA	NA	NA	NA
ASF13738.1|168023_168398_+	hypothetical protein	NA	NA	NA	NA	NA
168086:168101	attR	TCAATGTATTGCCAAA	NA	NA	NA	NA
ASF13740.1|168942_170352_-	ammonia-forming cytochrome c nitrite reductase subunit c552	NA	NA	NA	NA	NA
ASF13741.1|170335_171547_-	NnrS family protein	NA	NA	NA	NA	NA
ASF13742.1|172337_173369_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	48.5	1.3e-90
ASF13743.1|173562_173964_-	DUF86 domain-containing protein	NA	NA	NA	NA	NA
ASF13744.1|173956_174379_-	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA	NA
ASF13745.1|174485_175253_-	hypothetical protein	NA	NA	NA	NA	NA
ASF13746.1|175528_175981_-	copper resistance protein NlpE	NA	NA	NA	NA	NA
ASF13747.1|176148_177357_+|transposase	IS4-like element IS10A family transposase	transposase	Q9E8P4	Bluetongue_virus	71.4	3.1e-171
ASF13748.1|177702_179064_+	diguanylate cyclase	NA	NA	NA	NA	NA
ASF13749.1|179207_180098_+	glucose-1-phosphate thymidylyltransferase	NA	A0A291LA53	Escherichia_phage	56.4	7.2e-85
AVL27090.1|180084_180627_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	49.7	2.0e-45
ASF13750.1|180646_183025_-	YjbH domain-containing protein	NA	NA	NA	NA	NA
ASF13751.1|183024_183810_-	hypothetical protein	NA	NA	NA	NA	NA
ASF13752.1|183820_184531_-	YjbF family lipoprotein	NA	NA	NA	NA	NA
ASF13753.1|184680_184920_-	hypothetical protein	NA	NA	NA	NA	NA
ASF13754.1|185188_186313_-	patatin	NA	NA	NA	NA	NA
ASF13755.1|186578_188291_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
ASF13756.1|188489_189119_-	acyltransferase	NA	NA	NA	NA	NA
ASF13757.1|189119_189854_-|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	tRNA	NA	NA	NA	NA
ASF13758.1|189949_190330_-	hypothetical protein	NA	NA	NA	NA	NA
ASF13759.1|190407_191697_-	amidohydrolase	NA	NA	NA	NA	NA
ASF13760.1|191696_194771_-	amidohydrolase	NA	NA	NA	NA	NA
ASF13761.1|194978_195371_-	histone	NA	NA	NA	NA	NA
ASF13762.1|195680_196430_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
ASF13763.1|196430_197357_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
ASF13764.1|198987_199392_-|transposase	IS200/IS605 family transposase	transposase	I4AZM1	Saccharomonospora_phage	62.1	1.5e-42
ASF13765.1|199438_200533_+|transposase	transposase	transposase	Q19ZT4	Mycobacterium_virus	29.4	1.3e-27
ASF13766.1|201015_203166_-	M3 family peptidase	NA	A0A1V0SIU1	Klosneuvirus	24.4	3.6e-21
ASF13767.1|203337_205452_-	cytochrome C	NA	NA	NA	NA	NA
ASF13768.1|205756_206680_-|transposase	IS5/IS1182 family transposase	transposase	A0A1V0E8E1	Vibrio_phage	83.2	1.8e-147
ASF13770.1|207059_207638_+	thymidine kinase	NA	A0A289ZTU3	Serratia_phage	58.7	5.1e-55
ASF13771.1|207921_210993_+	penicillin-binding protein	NA	NA	NA	NA	NA
ASF13772.1|211116_212496_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
ASF13773.1|212492_214304_-	sensor histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	30.4	2.1e-06
ASF13774.1|214403_215801_-	C4-dicarboxylate ABC transporter permease	NA	NA	NA	NA	NA
ASF13775.1|215800_216445_-	TRAP transporter small permease	NA	NA	NA	NA	NA
ASF13776.1|216510_217530_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
ASF13777.1|217923_218154_-	hypothetical protein	NA	NA	NA	NA	NA
ASF13778.1|219540_220950_+|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
ASF13779.1|222879_224490_-|transposase	IS1634 family transposase ISSpu7	transposase	NA	NA	NA	NA
>prophage 3
CP022089	Shewanella sp. FDAARGOS_354 chromosome, complete genome	5031863	301733	339612	5031863	bacteriocin,tRNA,transposase	Bluetongue_virus(37.5%)	31	NA	NA
ASF13835.1|301733_302519_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
ASF13836.1|302571_303870_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
ASF13837.1|303862_304678_+	sporulation protein	NA	NA	NA	NA	NA
ASF13838.1|304788_305277_+|bacteriocin	bacteriocin production protein	bacteriocin	NA	NA	NA	NA
ASF13839.1|305458_306973_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	42.1	1.6e-84
ASF13840.1|307086_308571_-	alanine:cation symporter family protein	NA	NA	NA	NA	NA
ASF13841.1|308943_309231_-	hypothetical protein	NA	NA	NA	NA	NA
ASF13842.1|309432_311562_+	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	32.3	1.1e-41
ASF13843.1|311811_312981_+	porin	NA	NA	NA	NA	NA
ASF13844.1|313071_314598_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
ASF13845.1|314763_316317_+	flavocytochrome c	NA	A0A2P0ZL82	Lactobacillus_phage	24.4	1.9e-24
ASF13846.1|316352_317990_+	histidine ammonia-lyase	NA	NA	NA	NA	NA
ASF13847.1|318031_318415_+	cytochrome C	NA	NA	NA	NA	NA
ASF13848.1|318638_319928_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
ASF13849.1|320107_320752_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
ASF13850.1|321075_322815_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.6	1.5e-25
ASF13851.1|323029_324043_+	isoquinoline 1-oxidoreductase maturation factor	NA	NA	NA	NA	NA
ASF13852.1|324042_324747_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
ASF13853.1|324750_325248_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
ASF13854.1|325249_327496_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
ASF13855.1|327858_328350_+	DUF1097 domain-containing protein	NA	NA	NA	NA	NA
ASF13856.1|328463_329918_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	25.6	4.3e-26
ASF13857.1|330109_331084_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
ASF13858.1|331385_331820_+	hypothetical protein	NA	NA	NA	NA	NA
ASF13859.1|332693_333011_+	hypothetical protein	NA	NA	NA	NA	NA
ASF13860.2|333071_334322_+|transposase	IS4-like element IS10A family transposase	transposase	Q9E8P4	Bluetongue_virus	71.1	1.6e-170
ASF13861.1|334318_334783_+	hypothetical protein	NA	NA	NA	NA	NA
ASF13862.1|335370_336579_+|transposase	IS4-like element IS10A family transposase	transposase	Q9E8P4	Bluetongue_virus	71.4	3.1e-171
ASF13863.1|336575_338145_+|transposase	IS3-like element ISSpu6 family transposase	transposase	NA	NA	NA	NA
ASF13864.1|338194_338425_+	hypothetical protein	NA	NA	NA	NA	NA
ASF13865.1|338403_339612_-|transposase	IS4-like element IS10A family transposase	transposase	Q9E8P4	Bluetongue_virus	71.1	4.5e-170
>prophage 4
CP022089	Shewanella sp. FDAARGOS_354 chromosome, complete genome	5031863	368322	414805	5031863	transposase,protease	Bluetongue_virus(42.86%)	28	NA	NA
ASF13891.1|368322_369339_+|protease	protease SohB	protease	A0A2H4UUF9	Bodo_saltans_virus	29.2	4.5e-22
ASF13892.1|369532_370552_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
ASF13893.1|370995_372177_-	hypothetical protein	NA	NA	NA	NA	NA
ASF13894.1|375350_376559_+|transposase	IS4-like element IS10A family transposase	transposase	Q9E8P4	Bluetongue_virus	71.4	3.1e-171
ASF13895.2|376645_377896_+|transposase	IS4 family transposase IS10A	transposase	Q9E8P4	Bluetongue_virus	71.4	4.2e-171
ASF13896.1|378102_380655_+	bifunctional lysylphosphatidylglycerol flippase/synthetase MprF	NA	NA	NA	NA	NA
ASF13897.1|380662_381394_+	cutinase family protein	NA	NA	NA	NA	NA
ASF13898.1|381494_382562_-	DUF3083 domain-containing protein	NA	NA	NA	NA	NA
AVL27094.1|382706_383306_-	arylesterase	NA	NA	NA	NA	NA
ASF13899.1|383358_384108_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.7	6.0e-32
ASF13900.1|384111_386613_+	ABC transporter permease	NA	NA	NA	NA	NA
ASF13901.1|386777_388001_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
ASF13902.1|388550_389441_-	TIGR01777 family protein	NA	NA	NA	NA	NA
ASF13903.1|389523_389892_-	dihydroneopterin triphosphate 2'-epimerase	NA	NA	NA	NA	NA
ASF13904.1|389990_391097_+	AI-2E family transporter	NA	NA	NA	NA	NA
ASF13905.1|391103_392042_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
ASF13906.1|392283_393894_-|transposase	IS1634 family transposase ISSpu7	transposase	NA	NA	NA	NA
ASF13907.1|395448_395541_+	hypothetical protein	NA	NA	NA	NA	NA
ASF13908.1|395673_396108_-	hypothetical protein	NA	NA	NA	NA	NA
ASF13909.1|396566_398720_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
ASF13910.1|398841_400041_-	acetate kinase	NA	NA	NA	NA	NA
ASF13911.1|400182_400626_+	DUF412 domain-containing protein	NA	NA	NA	NA	NA
ASF13912.1|400640_401381_-	pyruvate formate lyase 1-activating protein	NA	NA	NA	NA	NA
ASF13913.1|401444_403727_-	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	41.6	3.5e-168
ASF13914.1|404755_405742_+	formate transporter FocA	NA	NA	NA	NA	NA
ASF13916.1|407616_409227_-|transposase	IS1634 family transposase ISSpu7	transposase	NA	NA	NA	NA
ASF13917.1|410591_413246_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	27.3	5.7e-53
ASF13918.1|413596_414805_-|transposase	IS4-like element IS10A family transposase	transposase	Q9E8P4	Bluetongue_virus	71.4	3.1e-171
>prophage 5
CP022089	Shewanella sp. FDAARGOS_354 chromosome, complete genome	5031863	772868	838040	5031863	transposase,tRNA,integrase	Synechococcus_phage(11.76%)	57	768077:768092	791023:791038
768077:768092	attL	CCAAGGCATAGATTTA	NA	NA	NA	NA
ASF14192.1|772868_773828_+|integrase	integron integrase	integrase	A0A1P8DJJ6	Virus_Rctr41k	39.5	1.0e-52
AVL27207.1|774018_774327_+	hypothetical protein	NA	NA	NA	NA	NA
ASF14193.1|774593_775295_-	EAL domain-containing protein	NA	NA	NA	NA	NA
ASF14194.1|775488_777414_-	lytic transglycosylase	NA	K4NWI2	Pseudomonas_phage	36.9	6.5e-14
ASF14195.1|777482_779096_-	DNA recombination protein RmuC	NA	R9RFD7	Alteromonas_phage	43.3	1.2e-05
ASF14196.1|779369_780404_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
ASF14197.1|780518_781166_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
ASF14198.1|781260_781671_-	lactoylglutathione lyase	NA	NA	NA	NA	NA
ASF14199.1|782297_783494_+	cation transporter	NA	NA	NA	NA	NA
ASF14200.1|783493_783955_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
ASF14201.1|784217_786311_+	S9 family peptidase	NA	NA	NA	NA	NA
ASF14202.1|786569_788195_+	phosphoethanolamine--lipid A transferase	NA	NA	NA	NA	NA
ASF14203.1|788354_789383_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
ASF17552.1|789497_790142_-	DUF938 domain-containing protein	NA	NA	NA	NA	NA
ASF14204.1|790457_791747_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
791023:791038	attR	TAAATCTATGCCTTGG	NA	NA	NA	NA
ASF14205.1|791809_792685_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
ASF14206.1|792880_794020_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	30.4	3.6e-36
ASF14207.1|794147_794987_+	S-formylglutathione hydrolase	NA	NA	NA	NA	NA
ASF14208.1|795274_796060_+	S1 family peptidase	NA	NA	NA	NA	NA
ASF14209.1|796171_797548_-	L-serine ammonia-lyase	NA	NA	NA	NA	NA
ASF14210.1|797931_798960_+	beta-hexosaminidase	NA	NA	NA	NA	NA
ASF17553.1|799041_799584_+	hypothetical protein	NA	NA	NA	NA	NA
ASF14211.1|800143_800416_+	acylphosphatase	NA	NA	NA	NA	NA
ASF14212.1|800533_801532_-	hypothetical protein	NA	NA	NA	NA	NA
ASF14213.1|801531_805026_-	transcription-repair coupling factor	NA	NA	NA	NA	NA
ASF14214.1|805112_805733_-	hypothetical protein	NA	NA	NA	NA	NA
ASF14215.1|805827_807060_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
ASF14216.1|807157_807850_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	41.1	3.6e-39
ASF14217.1|807846_809097_+	lipoprotein-releasing ABC transporter permease subunit LolE	NA	NA	NA	NA	NA
ASF14218.1|809189_809993_-	inositol-1-monophosphatase	NA	NA	NA	NA	NA
ASF14219.1|810147_810873_+|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	tRNA	NA	NA	NA	NA
ASF14220.1|810918_811740_+	serine O-acetyltransferase	NA	NA	NA	NA	NA
ASF14221.1|812092_812554_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
ASF14222.1|812632_813847_+	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	31.8	8.8e-33
ASF14223.1|813884_814268_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	77.4	1.0e-51
ASF14224.1|814282_814606_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	43.0	4.1e-22
ASF14225.1|814621_815146_+	co-chaperone HscB	NA	NA	NA	NA	NA
ASF14226.1|815213_817076_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	39.3	2.0e-105
ASF14227.1|817084_817420_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
ASF14228.1|817529_818738_+|transposase	IS4-like element IS10A family transposase	transposase	Q9E8P4	Bluetongue_virus	71.4	3.1e-171
ASF14229.1|818734_820304_+|transposase	IS3-like element ISSpu6 family transposase	transposase	NA	NA	NA	NA
ASF14230.1|820353_820584_+	hypothetical protein	NA	NA	NA	NA	NA
ASF14231.1|820562_821771_-|transposase	IS4-like element IS10A family transposase	transposase	Q9E8P4	Bluetongue_virus	71.1	4.5e-170
ASF14232.1|822037_822937_+	30S ribosomal protein S6--L-glutamate ligase	NA	I3ULC9	Synechococcus_phage	33.6	1.9e-40
ASF14233.1|823005_823203_+	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
ASF14234.1|823410_823578_+	hypothetical protein	NA	NA	NA	NA	NA
ASF14235.1|823810_824242_+	nucleoside-diphosphate kinase	NA	K7YW26	Megavirus	40.9	4.8e-18
ASF14236.1|824571_825015_+	heat-shock protein	NA	A0A2L0V0Y9	Agrobacterium_phage	49.5	1.8e-20
ASF14237.1|825123_825618_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
ASF14238.1|825617_827336_-	acetolactate synthase 3 large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	30.2	3.6e-56
ASF14239.1|827800_829024_-	MFS transporter	NA	NA	NA	NA	NA
ASF14240.1|829506_831381_+	alkaline phosphatase	NA	NA	NA	NA	NA
ASF14241.1|831509_832868_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
ASF14242.1|832959_833586_+	lysine transporter LysE	NA	NA	NA	NA	NA
ASF14243.1|833747_834773_+|transposase	IS630-like element ISSpu8 family transposase	transposase	M4M9P8	Vibrio_phage	62.7	9.4e-12
ASF14244.1|834912_836670_+	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	25.9	7.0e-15
ASF14245.1|836717_838040_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP022089	Shewanella sp. FDAARGOS_354 chromosome, complete genome	5031863	908263	917563	5031863	tRNA	Mycobacterium_phage(16.67%)	9	NA	NA
ASF14302.1|908263_911002_+	DUF87 domain-containing protein	NA	A0A218M9A2	Mycobacterium_phage	47.5	9.4e-83
ASF14303.1|911071_911692_+	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
ASF14304.1|911700_913032_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	39.2	1.9e-76
ASF14305.1|913024_913399_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	36.8	3.5e-09
ASF14306.1|913417_914704_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	45.0	6.3e-98
ASF14307.1|914722_914845_+	hypothetical protein	NA	NA	NA	NA	NA
ASF14308.1|914922_915474_-	ecotin	NA	NA	NA	NA	NA
ASF14309.1|915989_917165_+	hypothetical protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	38.2	1.7e-12
ASF14310.1|917197_917563_+	response regulator	NA	W8CYM9	Bacillus_phage	37.9	9.4e-15
>prophage 7
CP022089	Shewanella sp. FDAARGOS_354 chromosome, complete genome	5031863	942694	1006361	5031863	transposase,tRNA,integrase	Streptococcus_phage(22.22%)	46	955935:955950	982662:982677
ASF14334.1|942694_943129_+|transposase	IS200/IS605 family transposase	transposase	A0A0H3UZM0	Geobacillus_virus	28.8	7.5e-11
ASF14335.1|944013_945207_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
ASF14336.1|945305_946226_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	29.2	1.1e-24
ASF14337.1|946516_947329_+	glucosaminidase	NA	NA	NA	NA	NA
ASF14338.1|947321_947945_+	DUF2987 domain-containing protein	NA	NA	NA	NA	NA
ASF17560.1|948001_948934_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	72.7	6.4e-108
ASF14339.1|949047_949980_-	universal stress protein UspE	NA	NA	NA	NA	NA
ASF14340.1|950106_950859_-	transcriptional regulator FNR	NA	NA	NA	NA	NA
ASF14341.1|950914_951619_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
ASF14342.1|951615_951819_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
ASF14343.1|951839_954239_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	28.9	1.5e-68
ASF14344.1|954261_954741_-	cytochrome C oxidase Cbb3	NA	NA	NA	NA	NA
ASF14345.1|954851_955820_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
ASF14346.1|955819_955996_-	CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone	NA	NA	NA	NA	NA
955935:955950	attL	ATACCGACGAAGGTCA	NA	NA	NA	NA
ASF14347.1|956007_956634_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
ASF14348.1|956646_958083_-	cytochrome-c oxidase, cbb3-type subunit I	NA	NA	NA	NA	NA
ASF14349.1|958306_958792_+	hypothetical protein	NA	NA	NA	NA	NA
ASF14350.1|960619_961156_-	hypothetical protein	NA	NA	NA	NA	NA
ASF14351.1|961158_961368_-	hypothetical protein	NA	NA	NA	NA	NA
ASF14352.1|961396_962404_-|integrase	integrase	integrase	NA	NA	NA	NA
ASF14353.1|962664_963906_+|integrase	integrase	integrase	NA	NA	NA	NA
AVL27109.1|963924_966921_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	23.8	4.1e-63
ASF14354.1|967152_967896_-	superoxide dismutase	NA	NA	NA	NA	NA
ASF14355.1|969313_970246_-	chromate resistance protein	NA	NA	NA	NA	NA
ASF14356.1|970863_971709_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA	NA
ASF14357.1|971736_972636_-	formate dehydrogenase accessory protein FdhE	NA	NA	NA	NA	NA
ASF14358.1|972641_973262_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
ASF14359.1|973258_974161_-	formate dehydrogenase subunit beta	NA	NA	NA	NA	NA
ASF14360.1|975965_977174_+|transposase	IS4-like element IS10A family transposase	transposase	Q9E8P4	Bluetongue_virus	71.4	3.1e-171
ASF14361.1|979047_979944_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA	NA
AVL27110.1|980413_983779_-	glycoside hydrolase	NA	NA	NA	NA	NA
982662:982677	attR	TGACCTTCGTCGGTAT	NA	NA	NA	NA
ASF14362.1|984352_987190_+	TonB-dependent receptor	NA	NA	NA	NA	NA
ASF14363.1|987363_988119_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
ASF14364.1|988546_990451_-	alpha-N-arabinofuranosidase	NA	NA	NA	NA	NA
ASF14365.1|990453_991521_-	arabinan endo-1,5-alpha-L-arabinosidase	NA	NA	NA	NA	NA
ASF14366.1|991727_993173_+	MFS transporter	NA	NA	NA	NA	NA
ASF14367.1|993279_995667_+	glycosyl hydrolase	NA	NA	NA	NA	NA
ASF14368.1|995911_996502_-	DUF4303 domain-containing protein	NA	NA	NA	NA	NA
ASF14369.1|996777_997779_-	alpha-N-arabinofuranosidase	NA	NA	NA	NA	NA
ASF14370.1|997840_998977_-	alpha-N-arabinofuranosidase	NA	NA	NA	NA	NA
AVL27111.1|998951_999914_-	sugar ABC transporter permease YjfF	NA	NA	NA	NA	NA
ASF14371.1|999910_1001095_-	ABC transporter permease	NA	NA	NA	NA	NA
ASF14372.1|1001095_1002595_-	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.7	9.9e-18
ASF14373.1|1002624_1003566_-	sugar ABC transporter substrate-binding protein	NA	C6ZCU4	Enterobacteria_phage	25.5	1.2e-05
ASF14374.1|1003664_1004720_-	galactose mutarotase	NA	NA	NA	NA	NA
ASF14376.2|1005110_1006361_+|transposase	IS4-like element IS10A family transposase	transposase	Q9E8P4	Bluetongue_virus	71.4	9.3e-171
>prophage 8
CP022089	Shewanella sp. FDAARGOS_354 chromosome, complete genome	5031863	1185844	1232531	5031863	transposase	Bluetongue_virus(14.29%)	33	NA	NA
ASF14510.1|1185844_1186744_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
ASF14511.1|1186956_1187421_-	hypothetical protein	NA	NA	NA	NA	NA
ASF14512.1|1187420_1188590_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
ASF14513.1|1189066_1189993_+	hypothetical protein	NA	NA	NA	NA	NA
ASF14514.1|1190003_1190786_-	hypothetical protein	NA	NA	NA	NA	NA
ASF14515.1|1190870_1191758_-	hybrid sensor histidine kinase/response regulator	NA	NA	NA	NA	NA
ASF14516.1|1191750_1193361_-|transposase	IS1634 family transposase ISSpu7	transposase	NA	NA	NA	NA
ASF14517.1|1193474_1194572_-	hypothetical protein	NA	NA	NA	NA	NA
ASF14518.1|1194561_1194870_-	hypothetical protein	NA	NA	NA	NA	NA
ASF14519.1|1194862_1196068_-	diguanylate cyclase	NA	NA	NA	NA	NA
ASF14520.1|1196591_1197800_+|transposase	IS4-like element IS10A family transposase	transposase	Q9E8P4	Bluetongue_virus	71.4	3.1e-171
ASF14521.1|1199373_1200966_+	ABC-F family ATPase	NA	A0A2K9L3Z8	Tupanvirus	27.5	1.1e-51
ASF14522.2|1201656_1202679_-	hypothetical protein	NA	A0A2R2ZH57	Clostridioides_phage	32.1	2.6e-17
ASF14523.1|1203030_1204662_+	diguanylate cyclase response regulator	NA	A0A127AWB9	Bacillus_phage	31.9	7.0e-17
ASF14524.1|1204693_1205725_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
ASF14525.1|1205846_1206899_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
ASF14526.1|1206902_1207523_-	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
ASF14527.1|1207503_1208355_-	chemotaxis protein CheR	NA	NA	NA	NA	NA
ASF14528.1|1208355_1210326_-	PAS domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	43.8	2.6e-10
ASF14529.1|1210331_1210844_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AVL27118.1|1210858_1212964_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
ASF14530.1|1212980_1213346_-	response regulator	NA	Q56AR1	Bacillus_thuringiensis_phage	39.3	8.0e-14
ASF14531.1|1213349_1214411_-	hypothetical protein	NA	NA	NA	NA	NA
ASF14532.1|1214554_1215502_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.2	4.3e-43
ASF14533.1|1216145_1216430_-	anti-sigma factor antagonist	NA	NA	NA	NA	NA
ASF14534.1|1218017_1220729_+	CoA-binding protein	NA	NA	NA	NA	NA
ASF14535.1|1221064_1222096_-	isoaspartyl peptidase/L-asparaginase	NA	NA	NA	NA	NA
ASF14536.1|1222216_1224073_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
ASF14537.1|1224069_1228254_+	hypothetical protein	NA	NA	NA	NA	NA
ASF14538.1|1228450_1228738_-	50S ribosomal protein L25	NA	NA	NA	NA	NA
ASF14539.1|1229050_1229494_+	hypothetical protein	NA	NA	NA	NA	NA
ASF17569.1|1229444_1229993_-	DUF882 domain-containing protein	NA	NA	NA	NA	NA
ASF14540.1|1230975_1232531_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP022089	Shewanella sp. FDAARGOS_354 chromosome, complete genome	5031863	1887450	1971024	5031863	transposase,tRNA,portal	Bluetongue_virus(15.38%)	57	NA	NA
ASF15030.1|1887450_1888905_-|tRNA	tRNA 4-thiouridine(8) synthase ThiI	tRNA	NA	NA	NA	NA
ASF15031.1|1889121_1890042_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
ASF15032.1|1890045_1890813_-	flagellar motor protein PomA	NA	NA	NA	NA	NA
ASF15033.1|1891127_1891367_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
ASF15034.1|1891369_1892251_+	(2E,6E)-farnesyl diphosphate synthase	NA	NA	NA	NA	NA
ASF15035.1|1892272_1894141_+	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
ASF15036.1|1894273_1894894_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
ASF15037.1|1894993_1895872_+	NAD(+) kinase	NA	NA	NA	NA	NA
ASF15038.1|1896623_1898267_+	L-lactate permease	NA	NA	NA	NA	NA
ASF15039.1|1898333_1901138_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
ASF15040.1|1901439_1902183_+	(Fe-S)-binding protein	NA	NA	NA	NA	NA
ASF15041.1|1902193_1903588_+	lactate utilization protein	NA	NA	NA	NA	NA
ASF15042.1|1903589_1904159_+	lactate utilization protein B/C	NA	NA	NA	NA	NA
ASF15043.1|1904683_1905862_+	ATPase	NA	A0A1Y0SVM5	Pseudomonas_phage	29.7	1.2e-34
ASF15044.1|1906280_1906931_-	DUF2441 domain-containing protein	NA	I6PCV9	Cronobacter_phage	42.0	1.6e-36
ASF15045.1|1907031_1907544_-	hypothetical protein	NA	NA	NA	NA	NA
ASF17605.1|1907612_1908011_-	hypothetical protein	NA	NA	NA	NA	NA
ASF15046.1|1908961_1910473_-	hypothetical protein	NA	NA	NA	NA	NA
ASF15047.1|1910702_1912049_-	MATE family efflux transporter	NA	NA	NA	NA	NA
ASF15048.1|1912470_1914015_+	MFS transporter	NA	NA	NA	NA	NA
ASF15049.1|1914128_1914650_-	DUF3087 domain-containing protein	NA	NA	NA	NA	NA
ASF15050.1|1914992_1915769_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
ASF15051.1|1915779_1916883_-	GTP-binding protein	NA	NA	NA	NA	NA
ASF15052.1|1916989_1918360_-	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.2	5.4e-55
ASF15053.1|1918561_1921585_-	PAS domain S-box protein	NA	G3MA91	Bacillus_virus	36.8	9.2e-23
ASF15054.1|1921694_1923299_-	glycogen synthase	NA	NA	NA	NA	NA
ASF15055.1|1923351_1924614_-	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA	NA
ASF15056.1|1924732_1927246_-	glycogen/starch/alpha-glucan phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	42.5	1.8e-16
ASF15057.1|1927248_1929507_-	glycogen debranching enzyme GlgX	NA	NA	NA	NA	NA
ASF17606.1|1929503_1931741_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
ASF15058.1|1931761_1934152_-	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
ASF15059.1|1934660_1935293_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
ASF15060.1|1935361_1935838_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
ASF15061.1|1936165_1937314_+	L-threonine dehydrogenase	NA	NA	NA	NA	NA
ASF15062.1|1937999_1938371_+	cytoplasmic protein	NA	NA	NA	NA	NA
ASF15063.1|1939053_1940352_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
ASF15064.1|1940426_1940639_+	hypothetical protein	NA	NA	NA	NA	NA
ASF15065.1|1940676_1941045_-	acyl-CoA thioesterase	NA	A0A292GK23	Xanthomonas_phage	54.7	1.1e-31
ASF15066.1|1941419_1942742_-	isocitrate lyase	NA	NA	NA	NA	NA
ASF15067.1|1942876_1944526_-	malate synthase A	NA	NA	NA	NA	NA
ASF15068.1|1945361_1947830_+	TonB-dependent receptor	NA	NA	NA	NA	NA
ASF15069.1|1947898_1949668_-|portal	portal protein	portal	NA	NA	NA	NA
ASF15070.1|1949891_1951619_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	34.4	2.4e-15
ASF15071.1|1951682_1951895_-	hypothetical protein	NA	NA	NA	NA	NA
ASF15072.1|1952057_1953266_-|transposase	IS4-like element IS10A family transposase	transposase	Q9E8P4	Bluetongue_virus	71.4	3.1e-171
ASF17607.1|1954474_1954966_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
ASF15073.1|1955043_1955379_-	RnfH family protein	NA	NA	NA	NA	NA
ASF15074.1|1955368_1955806_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
ASF15075.1|1956061_1956553_+	SsrA-binding protein	NA	NA	NA	NA	NA
ASF15076.1|1957164_1958409_+	DUF4102 domain-containing protein	NA	A0A1V0E8G8	Vibrio_phage	49.1	1.1e-112
ASF15077.1|1959862_1961071_-|transposase	IS4-like element IS10A family transposase	transposase	Q9E8P4	Bluetongue_virus	71.4	3.1e-171
ASF15078.1|1963517_1965020_-|transposase	IS66 family transposase	transposase	S5VTD3	Leptospira_phage	36.6	2.1e-76
ASF15079.2|1965106_1965427_-	IS66 family insertion sequence hypothetical protein	NA	S5VXZ8	Leptospira_phage	45.9	1.2e-18
ASF15080.1|1965447_1965747_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
AVL27134.1|1966262_1967060_-	hypothetical protein	NA	NA	NA	NA	NA
ASF15083.1|1968034_1968958_+|transposase	IS5/IS1182 family transposase	transposase	A0A1V0E8E1	Vibrio_phage	83.2	1.8e-147
ASF15085.1|1969413_1971024_-|transposase	IS1634 family transposase ISSpu7	transposase	NA	NA	NA	NA
>prophage 10
CP022089	Shewanella sp. FDAARGOS_354 chromosome, complete genome	5031863	2101846	2111569	5031863	transposase,tRNA	Moraxella_phage(16.67%)	7	NA	NA
ASF15197.1|2101846_2102863_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	61.2	9.1e-116
ASF15198.1|2103077_2103293_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
ASF15199.1|2103299_2103743_+	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	46.3	3.5e-24
ASF15200.1|2103826_2105551_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	37.1	4.5e-67
ASF15201.1|2105686_2107537_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	32.7	7.1e-34
ASF15202.1|2108153_2110274_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	31.3	1.5e-19
ASF15203.2|2110318_2111569_+|transposase	IS4 family transposase IS10A	transposase	Q9E8P4	Bluetongue_virus	71.4	4.2e-171
>prophage 11
CP022089	Shewanella sp. FDAARGOS_354 chromosome, complete genome	5031863	2211587	2223455	5031863	transposase	Rhizobium_phage(28.57%)	13	NA	NA
ASF15282.1|2211587_2213243_-	VWA domain-containing protein	NA	L7TNG1	Rhizobium_phage	30.6	1.4e-09
ASF15283.1|2213312_2213753_-	hypothetical protein	NA	NA	NA	NA	NA
ASF15284.1|2213814_2214768_-	DUF3150 domain-containing protein	NA	NA	NA	NA	NA
ASF15285.1|2214866_2215634_-	hypothetical protein	NA	NA	NA	NA	NA
ASF15286.1|2215633_2216593_-	CbbQ/NirQ/NorQ/GpvN family protein	NA	L7TKP0	Rhizobium_phage	35.0	1.9e-30
ASF15287.1|2216802_2217819_-	endonuclease	NA	U6C712	Ralstonia_phage	37.4	6.9e-07
ASF15288.1|2218107_2218926_-	phage recombination protein Bet	NA	A0A0N7C1T0	Escherichia_phage	53.5	1.4e-53
ASF15289.1|2219005_2219425_-	single-stranded DNA-binding protein	NA	A0A0R6PHK0	Moraxella_phage	42.3	1.5e-19
ASF15290.1|2219554_2220658_+|transposase	transposase	transposase	Q9G0F2	Phage_Gifsy-1	67.1	1.8e-141
ASF15291.1|2220755_2221082_-	plasmid-related protein	NA	NA	NA	NA	NA
ASF15292.1|2221449_2222052_+	hypothetical protein	NA	NA	NA	NA	NA
ASF15293.1|2222193_2222373_+	hypothetical protein	NA	NA	NA	NA	NA
ASF15294.1|2222483_2223455_+	ATP-binding protein	NA	Q677Q6	Lymphocystis_disease_virus	32.4	1.3e-18
>prophage 12
CP022089	Shewanella sp. FDAARGOS_354 chromosome, complete genome	5031863	2618841	2657883	5031863	transposase	Bluetongue_virus(75.0%)	32	NA	NA
ASF15595.1|2618841_2620050_+|transposase	IS4-like element IS10A family transposase	transposase	Q9E8P4	Bluetongue_virus	71.1	1.2e-170
ASF17639.1|2621965_2622526_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
ASF15596.1|2622679_2623693_+	deoxycytidine triphosphate deaminase	NA	NA	NA	NA	NA
ASF15597.1|2623708_2623939_-	hypothetical protein	NA	NA	NA	NA	NA
ASF15598.1|2624009_2624426_+	META domain-containing protein	NA	NA	NA	NA	NA
ASF15599.1|2624494_2625817_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA	NA
ASF15600.1|2625979_2626276_-	hypothetical protein	NA	NA	NA	NA	NA
ASF15601.1|2626494_2626938_+	N-acetyltransferase	NA	NA	NA	NA	NA
ASF15602.1|2626996_2628289_-	HAAAP family serine/threonine permease	NA	NA	NA	NA	NA
ASF15603.1|2628737_2631305_-	acylase	NA	NA	NA	NA	NA
ASF15604.1|2631573_2632113_+	non-canonical purine NTP phosphatase	NA	NA	NA	NA	NA
ASF15605.1|2632264_2633194_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
ASF15607.1|2633765_2634974_-|transposase	IS4-like element IS10A family transposase	transposase	Q9E8P4	Bluetongue_virus	71.4	3.1e-171
ASF15608.1|2636196_2637096_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
ASF15609.1|2638406_2639600_-	serine hydrolase	NA	NA	NA	NA	NA
ASF15610.2|2639769_2641020_-|transposase	IS4-like element IS10A family transposase	transposase	Q9E8P4	Bluetongue_virus	71.4	9.3e-171
ASF15611.1|2641213_2641612_+	hypothetical protein	NA	NA	NA	NA	NA
ASF15612.1|2641613_2641964_+	hypothetical protein	NA	NA	NA	NA	NA
ASF15613.1|2641985_2642303_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
AVL27154.1|2642404_2643622_-	NADH:ubiquinone reductase (Na(+)-transporting) subunit F	NA	NA	NA	NA	NA
ASF15614.1|2643673_2644282_-	NADH:ubiquinone reductase (Na(+)-transporting) subunit E	NA	NA	NA	NA	NA
ASF15615.1|2644291_2644912_-	NADH:ubiquinone reductase (Na(+)-transporting) subunit D	NA	NA	NA	NA	NA
ASF15616.1|2644908_2645703_-	NADH:ubiquinone reductase (Na(+)-transporting) subunit C	NA	NA	NA	NA	NA
ASF15617.1|2645692_2646925_-	NADH:ubiquinone reductase (Na(+)-transporting) subunit B	NA	NA	NA	NA	NA
ASF15618.1|2646924_2648295_-	Na(+)-translocating NADH-quinone reductase subunit A	NA	NA	NA	NA	NA
AVL27155.1|2648748_2649789_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
ASF17640.1|2649946_2650357_+	VOC family protein	NA	NA	NA	NA	NA
ASF17641.1|2650556_2651933_-	ATP-dependent RNA helicase DbpA	NA	A0A1B1IS59	uncultured_Mediterranean_phage	33.1	9.6e-52
ASF15619.1|2651978_2652194_+	hypothetical protein	NA	NA	NA	NA	NA
ASF15620.1|2652251_2653109_-	pirin family protein	NA	NA	NA	NA	NA
ASF15621.1|2654496_2656107_-|transposase	IS1634 family transposase ISSpu7	transposase	NA	NA	NA	NA
ASF15622.1|2656269_2657883_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP022089	Shewanella sp. FDAARGOS_354 chromosome, complete genome	5031863	2726755	2778896	5031863	transposase,protease	Leptospira_phage(33.33%)	44	NA	NA
ASF15669.1|2726755_2727370_+|protease	SprT family zinc-dependent metalloprotease	protease	NA	NA	NA	NA
ASF15670.1|2727496_2728273_+	deoxyribonuclease	NA	NA	NA	NA	NA
ASF15671.1|2728281_2729013_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
ASF15672.1|2729105_2730053_+	glutathione synthase	NA	NA	NA	NA	NA
ASF15673.1|2730126_2731509_+	alkaline phosphatase	NA	NA	NA	NA	NA
ASF17646.1|2731727_2732756_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
ASF15674.1|2733378_2733645_+	hypothetical protein	NA	NA	NA	NA	NA
ASF15675.1|2733641_2735197_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
ASF15676.1|2735181_2735787_+	hypothetical protein	NA	NA	NA	NA	NA
ASF15677.1|2735868_2736267_+	hypothetical protein	NA	NA	NA	NA	NA
ASF15678.1|2736732_2737242_-	hypothetical protein	NA	NA	NA	NA	NA
ASF15679.1|2737509_2738136_-	hypothetical protein	NA	NA	NA	NA	NA
ASF15680.1|2739224_2740916_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
ASF15681.1|2741164_2741542_+	hypothetical protein	NA	NA	NA	NA	NA
ASF15682.1|2741747_2742872_+|protease	site-2 protease family protein	protease	NA	NA	NA	NA
ASF15683.1|2742950_2744396_-	RND transporter	NA	NA	NA	NA	NA
ASF15684.1|2744400_2746371_-	MacB family efflux pump subunit	NA	G9BWD6	Planktothrix_phage	44.1	1.7e-41
ASF15685.1|2746373_2747585_-	efflux RND transporter periplasmic adaptor subunit	NA	A0A140XAI1	Dickeya_phage	59.7	6.1e-10
ASF15686.1|2747956_2750227_-	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	NA	NA	NA	NA
ASF15687.1|2750427_2751333_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
ASF15688.1|2751392_2752121_-	HDOD domain-containing protein	NA	NA	NA	NA	NA
ASF15689.1|2752382_2754344_-	TonB-dependent receptor	NA	NA	NA	NA	NA
ASF15690.1|2754816_2756259_-	hypothetical protein	NA	NA	NA	NA	NA
ASF15691.1|2756262_2757594_-	hypothetical protein	NA	NA	NA	NA	NA
ASF15692.1|2757798_2758755_+	pyrimidine-specific ribonucleoside hydrolase RihA	NA	NA	NA	NA	NA
ASF15693.1|2758773_2759685_+	ribokinase	NA	NA	NA	NA	NA
ASF15694.1|2759855_2760332_+	azurin	NA	NA	NA	NA	NA
ASF15695.1|2760475_2760781_-	DUF3622 domain-containing protein	NA	NA	NA	NA	NA
ASF15696.1|2761133_2762402_+	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA	NA
ASF15697.1|2762487_2763054_-	hypoxanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
ASF15698.1|2763387_2765154_-	alkaline phosphatase	NA	NA	NA	NA	NA
ASF15699.1|2765422_2765848_+	CBS domain-containing protein	NA	NA	NA	NA	NA
ASF15700.1|2765927_2766533_+	DUF4274 domain-containing protein	NA	NA	NA	NA	NA
ASF15701.1|2766550_2767912_-	MATE family efflux transporter	NA	NA	NA	NA	NA
ASF15702.1|2768252_2769167_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
ASF15703.1|2769262_2769745_-	cupin	NA	A0A291ATU0	Pandoravirus	40.9	1.0e-16
ASF15704.1|2770022_2770931_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	34.3	2.3e-14
ASF15705.1|2771014_2773201_-	OsmC domain/YcaO domain-containing protein	NA	NA	NA	NA	NA
ASF15706.1|2773418_2773661_-	hypothetical protein	NA	NA	NA	NA	NA
ASF15707.1|2773718_2775221_-|transposase	IS66 family transposase	transposase	S5VTD3	Leptospira_phage	36.6	2.1e-76
ASF15708.2|2775307_2775628_-	IS66 family insertion sequence hypothetical protein	NA	S5VXZ8	Leptospira_phage	45.9	1.2e-18
ASF15709.1|2775648_2775948_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
ASF15710.1|2776124_2777735_+|transposase	IS1634 family transposase ISSpu7	transposase	NA	NA	NA	NA
ASF15711.1|2777774_2778896_-|transposase	ISAs1 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP022089	Shewanella sp. FDAARGOS_354 chromosome, complete genome	5031863	2873020	2919754	5031863	tRNA,transposase,protease	Bodo_saltans_virus(12.5%)	39	NA	NA
ASF15794.1|2873020_2873998_-|transposase	transposase	transposase	NA	NA	NA	NA
ASF15795.1|2874189_2874420_-	hypothetical protein	NA	NA	NA	NA	NA
ASF15796.1|2875946_2876426_-	hypothetical protein	NA	NA	NA	NA	NA
ASF15797.1|2876619_2876898_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
ASF15798.1|2876975_2879282_-	penicillin-binding protein 1B	NA	NA	NA	NA	NA
ASF15799.1|2879359_2881867_-	ATP-dependent helicase HrpB	NA	A0A2H4UU36	Bodo_saltans_virus	29.4	5.8e-39
ASF15800.1|2882036_2884043_-	TonB-dependent copper receptor	NA	NA	NA	NA	NA
ASF15801.1|2884249_2886436_-	D-glycero-D-manno-heptose 1-phosphate guanosyltransferase	NA	NA	NA	NA	NA
ASF15802.1|2886607_2887183_+	RNA 2',3'-cyclic phosphodiesterase	NA	NA	NA	NA	NA
ASF15803.1|2887251_2888031_-	hypothetical protein	NA	NA	NA	NA	NA
ASF15804.1|2888452_2889088_+	cAMP-activated global transcriptional regulator CRP	NA	NA	NA	NA	NA
ASF15805.1|2889170_2889518_+	hypothetical protein	NA	NA	NA	NA	NA
ASF15806.1|2889498_2890173_+	DNA-binding response regulator	NA	NA	NA	NA	NA
ASF15807.1|2890169_2891498_+	GHKL domain-containing protein	NA	NA	NA	NA	NA
ASF15808.1|2891642_2892446_-	DUF1338 domain-containing protein	NA	NA	NA	NA	NA
ASF15809.1|2892610_2894074_-	succinylglutamate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
ASF15810.1|2894083_2895103_-	arginine N-succinyltransferase	NA	NA	NA	NA	NA
ASF15811.1|2895228_2896446_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	27.5	8.3e-23
ASF15812.1|2896754_2897666_-	alpha/beta hydrolase	NA	A0A2P1EM31	Moumouvirus	31.4	2.5e-16
ASF15813.1|2897721_2898867_-	HDOD domain-containing protein	NA	NA	NA	NA	NA
ASF15814.1|2899066_2901547_-	S9 family peptidase	NA	NA	NA	NA	NA
ASF15815.1|2901722_2902298_-	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	55.3	3.7e-58
ASF15816.1|2902453_2902891_-|protease	ClpXP protease specificity-enhancing factor	protease	A0A1S5R3H3	Pseudomonas_phage	41.8	7.8e-24
ASF15817.1|2902890_2903520_-	stringent starvation protein A	NA	NA	NA	NA	NA
ASF15818.1|2903616_2904315_-	cytochrome c1	NA	NA	NA	NA	NA
ASF15819.1|2904314_2905529_-	cytochrome b	NA	NA	NA	NA	NA
ASF15820.1|2905528_2906119_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AVL27158.1|2906489_2907383_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
ASF15821.1|2907386_2908532_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
ASF15822.1|2908568_2909876_-	GTPase HflX	NA	NA	NA	NA	NA
ASF15823.1|2909899_2910172_-	RNA-binding protein Hfq	NA	NA	NA	NA	NA
ASF15824.1|2910264_2911191_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
ASF15825.1|2911183_2913094_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	38.0	4.4e-55
ASF15826.1|2913108_2914500_-	AMIN domain-containing protein	NA	M1IQ67	Bacillus_virus	26.5	2.0e-20
ASF15827.1|2914508_2914973_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
ASF15828.1|2915053_2916553_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
ASF15829.1|2916846_2918049_+|transposase	IS256-like element ISSod4 family transposase	transposase	A0A218MNI5	uncultured_virus	75.6	1.7e-81
ASF15830.1|2918114_2918570_-	hypothetical protein	NA	NA	NA	NA	NA
ASF15831.1|2918854_2919754_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP022089	Shewanella sp. FDAARGOS_354 chromosome, complete genome	5031863	3314866	3373149	5031863	transposase,tRNA	Acanthamoeba_polyphaga_moumouvirus(25.0%)	49	NA	NA
ASF16141.1|3314866_3315331_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
ASF16142.1|3315435_3316335_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
ASF16143.1|3316684_3316999_-	hypothetical protein	NA	NA	NA	NA	NA
ASF16144.1|3317465_3318146_+	hypothetical protein	NA	NA	NA	NA	NA
ASF16145.1|3318240_3319530_+	hypothetical protein	NA	NA	NA	NA	NA
ASF16146.1|3319727_3320282_-	hypothetical protein	NA	NA	NA	NA	NA
ASF16147.1|3320527_3322555_+	S9 family peptidase	NA	NA	NA	NA	NA
ASF16148.1|3322636_3324115_-	insulinase family protein	NA	NA	NA	NA	NA
ASF16149.1|3324111_3325443_-	insulinase family protein	NA	L7RBE7	Acanthamoeba_polyphaga_moumouvirus	26.2	2.9e-21
ASF16150.1|3325579_3326992_-	amidohydrolase	NA	NA	NA	NA	NA
ASF16151.1|3327197_3332093_-	GlyGly-CTERM sorting domain-containing protein	NA	NA	NA	NA	NA
ASF16152.1|3332373_3333264_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
ASF16153.1|3333601_3333979_-	hypothetical protein	NA	NA	NA	NA	NA
ASF16154.1|3334596_3335574_-|transposase	transposase	transposase	NA	NA	NA	NA
ASF16155.1|3335616_3336024_+	hypothetical protein	NA	NA	NA	NA	NA
ASF16156.1|3336020_3336659_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
ASF16157.1|3336725_3337079_-	hypothetical protein	NA	NA	NA	NA	NA
ASF16158.1|3337361_3339479_+	PAS domain S-box protein	NA	G3MA91	Bacillus_virus	37.9	3.9e-20
ASF17655.1|3339778_3340372_-	DTW domain-containing protein	NA	NA	NA	NA	NA
ASF16159.1|3340571_3341408_+	putative porin	NA	NA	NA	NA	NA
ASF16160.1|3341480_3342689_-	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA	NA
ASF16161.1|3342804_3343770_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
ASF16162.1|3343832_3345704_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.4	3.1e-21
ASF16163.1|3346147_3346498_+	hypothetical protein	NA	NA	NA	NA	NA
ASF16164.1|3346479_3347955_-	DUF4145 domain-containing protein	NA	NA	NA	NA	NA
ASF16165.1|3347991_3348699_-	hypothetical protein	NA	NA	NA	NA	NA
ASF16166.1|3348889_3349417_+	hypothetical protein	NA	NA	NA	NA	NA
ASF16167.1|3349511_3349970_+	TerB family tellurite resistance protein	NA	NA	NA	NA	NA
ASF16168.1|3350059_3350884_-	HDOD domain-containing protein	NA	NA	NA	NA	NA
ASF16169.1|3351201_3351813_+	energy transducer TonB	NA	NA	NA	NA	NA
ASF16170.1|3351878_3353147_-	L-methionine/branched-chain amino acid transporter	NA	NA	NA	NA	NA
ASF16171.1|3353358_3353790_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
ASF16172.1|3354058_3355000_-	cytochrome c nitrite reductase subunit NrfD	NA	NA	NA	NA	NA
ASF16173.1|3354996_3355683_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
ASF16174.1|3355687_3356152_-	nitrite reductase	NA	NA	NA	NA	NA
ASF16175.1|3356229_3356706_-	DUF2726 domain-containing protein	NA	NA	NA	NA	NA
ASF16176.1|3357102_3358716_+|transposase	IS1634 family transposase ISShes12	transposase	NA	NA	NA	NA
ASF16177.1|3358887_3359787_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
ASF16178.1|3359865_3360834_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
ASF16179.1|3361010_3362732_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
ASF16180.1|3362731_3363532_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
ASF16181.1|3363582_3364632_+	o-succinylbenzoate synthase	NA	NA	NA	NA	NA
ASF16182.1|3364638_3366105_+	o-succinylbenzoate--CoA ligase	NA	NA	NA	NA	NA
ASF16183.1|3366190_3367429_-	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
ASF16184.1|3367742_3368369_+	DNA-binding response regulator	NA	NA	NA	NA	NA
ASF16185.1|3368365_3369199_+	hypothetical protein	NA	NA	NA	NA	NA
ASF16186.1|3369195_3370809_-|transposase	IS1634 family transposase ISShes12	transposase	NA	NA	NA	NA
ASF16187.1|3370890_3371838_+	hypothetical protein	NA	NA	NA	NA	NA
ASF16188.1|3371940_3373149_+|transposase	IS4-like element IS10A family transposase	transposase	Q9E8P4	Bluetongue_virus	71.4	3.1e-171
>prophage 16
CP022089	Shewanella sp. FDAARGOS_354 chromosome, complete genome	5031863	3400812	3460623	5031863	transposase,integrase	Bluetongue_virus(25.0%)	47	3391849:3391865	3451759:3451775
3391849:3391865	attL	ACCGCCATGGGCAGAAG	NA	NA	NA	NA
ASF16212.1|3400812_3402368_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
ASF16213.1|3402568_3403738_+	ribonuclease T	NA	NA	NA	NA	NA
AVL27166.1|3403970_3404753_-	VOC family protein	NA	NA	NA	NA	NA
ASF16214.1|3404885_3406142_-	tryptophan permease	NA	NA	NA	NA	NA
ASF16215.1|3406141_3408565_-	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA	NA
ASF16216.1|3408850_3409471_+	repressor LexA	NA	Q8SBE8	Shigella_phage	43.3	1.3e-11
ASF16217.1|3409467_3409980_+	cell division protein	NA	NA	NA	NA	NA
ASF16218.1|3410385_3411927_+	cytochrome c oxidase subunit II	NA	NA	NA	NA	NA
ASF16219.1|3411936_3413529_+	cytochrome c oxidase subunit I	NA	R9VX24	Flavobacterium_phage	37.9	1.2e-10
ASF16220.1|3413530_3414112_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
ASF16221.1|3414108_3414984_+	cytochrome c oxidase subunit 3	NA	NA	NA	NA	NA
ASF16222.1|3415012_3415243_-	DUF2909 domain-containing protein	NA	NA	NA	NA	NA
ASF17658.1|3415241_3416099_+	SURF1 family protein	NA	NA	NA	NA	NA
ASF16223.1|3416166_3416712_+	hypothetical protein	NA	NA	NA	NA	NA
ASF16224.1|3416711_3417785_+	heme A synthase	NA	NA	NA	NA	NA
ASF16225.1|3417787_3418690_+	protoheme IX farnesyltransferase	NA	NA	NA	NA	NA
ASF16226.1|3418720_3419362_+	SCO family protein	NA	NA	NA	NA	NA
ASF16227.1|3419377_3420424_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
ASF16228.1|3420446_3421814_+	MATE family efflux transporter	NA	NA	NA	NA	NA
ASF16229.1|3421891_3423829_+	S9 family peptidase	NA	NA	NA	NA	NA
ASF16230.1|3423895_3424474_-	iron-sulfur cluster biogenesis protein NfuA	NA	NA	NA	NA	NA
ASF16231.1|3424725_3426474_-	flavocytochrome c	NA	A0A2P0ZL82	Lactobacillus_phage	29.2	1.2e-67
ASF16232.1|3426566_3427331_-	porin	NA	NA	NA	NA	NA
ASF16233.1|3427504_3428749_-	sensor histidine kinase	NA	NA	NA	NA	NA
ASF16234.1|3428735_3429413_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	29.4	3.1e-19
ASF16235.1|3429415_3430162_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
ASF17659.1|3430333_3431041_-	ComF family protein	NA	NA	NA	NA	NA
ASF16236.1|3431147_3431942_+	pimeloyl-[acyl-carrier protein] methyl ester esterase	NA	NA	NA	NA	NA
ASF16237.1|3432003_3432558_+	hypothetical protein	NA	NA	NA	NA	NA
ASF16238.1|3432615_3434589_-	LTA synthase family protein	NA	NA	NA	NA	NA
ASF16239.1|3434804_3437171_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
ASF16241.1|3437812_3439114_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
ASF16242.1|3439110_3439425_+	hypothetical protein	NA	NA	NA	NA	NA
ASF16243.1|3439515_3442761_+	hypothetical protein	NA	NA	NA	NA	NA
ASF16244.1|3442744_3443953_-|transposase	IS4-like element IS10A family transposase	transposase	Q9E8P4	Bluetongue_virus	71.4	3.1e-171
ASF16245.1|3445848_3446469_+	hypothetical protein	NA	NA	NA	NA	NA
ASF16246.1|3446489_3446993_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
ASF16247.1|3447691_3448111_+	hypothetical protein	NA	NA	NA	NA	NA
ASF16248.1|3448613_3449822_-|transposase	IS4-like element IS10A family transposase	transposase	Q9E8P4	Bluetongue_virus	71.4	3.1e-171
ASF16249.1|3449948_3451709_+	ATPase	NA	NA	NA	NA	NA
ASF16250.1|3451708_3452596_+	hypothetical protein	NA	NA	NA	NA	NA
3451759:3451775	attR	ACCGCCATGGGCAGAAG	NA	NA	NA	NA
ASF16251.1|3452588_3453923_+	hypothetical protein	NA	NA	NA	NA	NA
ASF16252.1|3453919_3454657_+	hydrolase TatD	NA	NA	NA	NA	NA
ASF16254.1|3455487_3455772_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
ASF16255.1|3455774_3456131_+	IS66 family insertion sequence hypothetical protein	NA	S5VXZ8	Leptospira_phage	46.8	5.4e-23
ASF16256.1|3456223_3457783_+|transposase	IS66 family transposase	transposase	S5VTD3	Leptospira_phage	34.9	2.0e-69
ASF16257.1|3459501_3460623_+|transposase	ISAs1 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP022089	Shewanella sp. FDAARGOS_354 chromosome, complete genome	5031863	4028941	4089505	5031863	transposase	Bluetongue_virus(33.33%)	51	NA	NA
ASF16730.1|4028941_4030150_+|transposase	IS4-like element IS10A family transposase	transposase	Q9E8P4	Bluetongue_virus	71.4	3.1e-171
ASF16731.1|4031351_4031900_-	hypothetical protein	NA	NA	NA	NA	NA
ASF16732.1|4031899_4032148_-	acyl carrier protein	NA	NA	NA	NA	NA
ASF16733.1|4032157_4032412_-	acyl carrier protein	NA	NA	NA	NA	NA
ASF16734.1|4032389_4033247_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
ASF16735.1|4033239_4033980_-	3-oxoacyl-ACP synthase	NA	NA	NA	NA	NA
ASF16736.1|4034346_4035240_-	DUF3014 domain-containing protein	NA	NA	NA	NA	NA
ASF16737.1|4035415_4037491_-	DNA helicase RecG	NA	NA	NA	NA	NA
ASF16738.1|4037846_4038818_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
ASF16739.1|4038814_4040428_-|transposase	IS1634 family transposase ISShes12	transposase	NA	NA	NA	NA
ASF16740.1|4040678_4042484_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
ASF17683.1|4042587_4043001_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA	NA
ASF16741.1|4042963_4043803_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
ASF16742.1|4043970_4045287_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
ASF16743.1|4045343_4046216_-	HTH-type transcriptional activator IlvY	NA	NA	NA	NA	NA
ASF16744.1|4046412_4047891_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
ASF16745.1|4048017_4048197_-	hypothetical protein	NA	NA	NA	NA	NA
ASF16746.1|4048222_4048315_+	leader peptide IlvL	NA	NA	NA	NA	NA
ASF16747.1|4048484_4050143_+	acetolactate synthase 2 catalytic subunit	NA	A0A0P0CRC5	Ostreococcus_lucimarinus_virus	32.8	1.5e-62
ASF16748.1|4050139_4050400_+	acetolactate synthase 2 small subunit	NA	NA	NA	NA	NA
ASF16749.1|4050481_4052341_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
ASF16750.1|4052342_4054001_+	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
ASF16751.1|4054138_4055272_+	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
ASF17684.2|4055294_4055567_+	hypothetical protein	NA	NA	NA	NA	NA
ASF16752.1|4055568_4055751_-	hypothetical protein	NA	NA	NA	NA	NA
ASF17685.1|4055872_4056169_+	hypothetical protein	NA	NA	NA	NA	NA
ASF16753.1|4056227_4056476_+	hypothetical protein	NA	NA	NA	NA	NA
ASF16754.1|4057542_4058751_+|transposase	IS4-like element IS10A family transposase	transposase	Q9E8P4	Bluetongue_virus	71.4	3.1e-171
ASF16755.1|4059020_4060052_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
ASF16756.1|4060236_4061112_+	Tim44 domain-containing protein	NA	NA	NA	NA	NA
ASF16757.1|4061199_4062564_-	sodium-dependent transporter	NA	NA	NA	NA	NA
ASF16758.1|4062900_4063401_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
ASF16759.1|4063583_4064366_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
ASF16760.1|4064483_4065962_-	cell envelope integrity protein CreD	NA	NA	NA	NA	NA
ASF16761.1|4066124_4066652_-	hypothetical protein	NA	NA	NA	NA	NA
ASF16762.1|4066887_4068054_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
ASF16763.1|4068050_4068416_-	hypothetical protein	NA	NA	NA	NA	NA
ASF16764.1|4068474_4068807_-	hypothetical protein	NA	NA	NA	NA	NA
ASF16765.1|4068900_4069155_-	hypothetical protein	NA	NA	NA	NA	NA
ASF16766.1|4069271_4072361_-	transporter	NA	S5VTK5	Leptospira_phage	22.4	1.0e-48
ASF16767.1|4072374_4073493_-	MexH family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
ASF16768.1|4073513_4074086_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
ASF16769.1|4074411_4076427_+	DNA helicase Rep	NA	A7KV33	Bacillus_phage	39.9	5.8e-122
AVL27179.1|4076447_4079078_-	bifunctional diguanylate cyclase/phosphodiesterase	NA	NA	NA	NA	NA
ASF16770.1|4079992_4081912_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
ASF16771.1|4081920_4082628_-	hypothetical protein	NA	NA	NA	NA	NA
ASF16772.1|4082646_4083252_-	OmpA family protein	NA	NA	NA	NA	NA
AVL27180.1|4083248_4084616_-	channel protein TolC	NA	NA	NA	NA	NA
ASF16773.1|4084675_4085599_-|transposase	IS5/IS1182 family transposase	transposase	A0A1V0E8E1	Vibrio_phage	83.2	1.8e-147
ASF16775.1|4085758_4087141_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
ASF16776.1|4087894_4089505_+|transposase	IS1634 family transposase ISSpu7	transposase	NA	NA	NA	NA
>prophage 18
CP022089	Shewanella sp. FDAARGOS_354 chromosome, complete genome	5031863	4853817	4861260	5031863		Staphylococcus_phage(50.0%)	7	NA	NA
ASF17383.1|4853817_4855485_-	energy-dependent translational throttle protein EttA	NA	A0A1V0SKJ1	Klosneuvirus	27.9	8.6e-39
ASF17384.1|4855675_4856929_+	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	53.1	2.7e-101
ASF17385.1|4857125_4857575_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
ASF17386.1|4857662_4858808_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	35.5	2.3e-51
ASF17387.1|4858815_4859472_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	34.0	8.7e-27
ASF17388.1|4859539_4860643_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	40.3	1.2e-68
ASF17389.1|4860783_4861260_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	45.7	1.0e-29
>prophage 19
CP022089	Shewanella sp. FDAARGOS_354 chromosome, complete genome	5031863	4885295	4896502	5031863	tRNA	uncultured_Mediterranean_phage(33.33%)	7	NA	NA
ASF17408.1|4885295_4886045_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	52.7	1.3e-71
ASF17409.1|4886041_4886677_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	51.2	2.4e-34
ASF17410.1|4886736_4887633_+	LysM peptidoglycan-binding domain-containing protein	NA	I3PV79	Clostridium_phage	31.9	1.2e-10
ASF17411.1|4888807_4891393_-	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.0	1.1e-29
ASF17412.1|4891775_4892849_+	DNA recombination/repair protein RecA	NA	A0A2D1GPX2	Mycobacterium_phage	61.9	1.4e-111
ASF17413.1|4892923_4893334_+	regulatory protein RecX	NA	NA	NA	NA	NA
ASF17414.1|4893877_4896502_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.2	4.2e-80
