assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002165115.2_ASM216511v2	CP032426	Escherichia coli strain SCEC020001 chromosome, complete genome	1	641759-641898	1	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCA	49	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|336aa|up_9|CP032426.1_634224_635232_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|293aa|up_8|CP032426.1_635437_636316_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|up_7|CP032426.1_636324_637320_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|up_6|CP032426.1_637528_638053_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|up_5|CP032426.1_638046_638550_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|101aa|up_4|CP032426.1_638536_638839_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|up_3|CP032426.1_638889_639333_+	PRK03467, PRK03467, hypothetical protein; Provisional	NA|173aa|up_2|CP032426.1_639312_639831_-	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|212aa|up_1|CP032426.1_639958_640594_+	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs	NA|347aa|up_0|CP032426.1_640666_641707_+	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|192aa|down_0|CP032426.1_641911_642487_-	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|197aa|down_1|CP032426.1_642496_643087_-	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional	NA|132aa|down_2|CP032426.1_643106_643502_-	TIGR00252, UPF0102_protein_HI_1656, TIGR00252 family protein	NA|679aa|down_3|CP032426.1_643459_645496_-	COG3107, LppC, Putative lipoprotein [General function prediction only]	NA|287aa|down_4|CP032426.1_645560_646421_+	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional	NA|364aa|down_5|CP032426.1_646463_647555_-	pfam00419, Fimbrial, Fimbrial protein	NA|791aa|down_6|CP032426.1_647565_649938_-	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|252aa|down_7|CP032426.1_650883_651639_-	PRK09762, PRK09762, galactosamine-6-phosphate isomerase; Provisional	NA|264aa|down_8|CP032426.1_651639_652431_-	PRK09855, PRK09855, PTS N-acetylgalactosamine transporter subunit IID	NA|268aa|down_9|CP032426.1_652420_653224_-	PRK09757, PRK09757, PTS N-acetylgalactosamine transporter subunit IIC
GCA_002165115.2_ASM216511v2	CP032426	Escherichia coli strain SCEC020001 chromosome, complete genome	2	669949-670200	1	PILER-CR	no		cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TTTTGGAGGAGCAGAAAGATGAATGACTGTCCACGACGCTATACCCAAAAGAAA	54	0	0	NA	NA	NA	2	2	Orphan	cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|180aa|down_1|CP032426.1_671707_672247_-	NA|158aa|up_9|CP032426.1_659523_659997_-	PRK11425, PRK11425, PTS N-acetylgalactosamine transporter subunit IIB	NA|427aa|up_8|CP032426.1_660019_661300_-	PRK15458, PRK15458, tagatose 6-phosphate aldolase subunit KbaZ; Provisional	NA|270aa|up_7|CP032426.1_661548_662358_+	PRK09802, PRK09802, DeoR family transcriptional regulator	NA|155aa|up_6|CP032426.1_662412_662877_-	pfam11663, Toxin_YhaV, Toxin with endonuclease activity, of toxin-antitoxin system	NA|112aa|up_5|CP032426.1_662876_663212_-	PRK09974, PRK09974, type II toxin-antitoxin system PrlF family antitoxin	NA|524aa|up_4|CP032426.1_663360_664932_-	TIGR03248, galactar-dH20, galactarate dehydratase	NA|445aa|up_3|CP032426.1_665306_666641_+	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter	NA|257aa|up_2|CP032426.1_666656_667427_+	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|297aa|up_1|CP032426.1_667456_668347_+	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|382aa|up_0|CP032426.1_668443_669589_+	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|396aa|down_0|CP032426.1_670498_671686_-	PRK09716, PRK09716, YhaC family protein	NA|180aa|down_1|CP032426.1_671707_672247_-	NA	NA|115aa|down_2|CP032426.1_672502_672847_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|down_3|CP032426.1_673035_673974_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|down_4|CP032426.1_674072_675062_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|down_5|CP032426.1_675083_676415_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|down_6|CP032426.1_676440_677649_+	PRK12379, PRK12379, propionate kinase	NA|765aa|down_7|CP032426.1_677682_679977_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|down_8|CP032426.1_679990_680380_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|down_9|CP032426.1_680451_681816_+	PRK15040, PRK15040, L-serine ammonia-lyase
GCA_002165115.2_ASM216511v2	CP032426	Escherichia coli strain SCEC020001 chromosome, complete genome	3	684781-684898	2	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|55aa|down_0|CP032426.1_684971_685136_-	NA|115aa|up_9|CP032426.1_672502_672847_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|CP032426.1_673035_673974_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|CP032426.1_674072_675062_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|CP032426.1_675083_676415_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|CP032426.1_676440_677649_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|CP032426.1_677682_679977_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|CP032426.1_679990_680380_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|CP032426.1_680451_681816_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|CP032426.1_682090_683422_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|CP032426.1_683449_684760_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|CP032426.1_684971_685136_-	NA	NA|234aa|down_1|CP032426.1_685158_685860_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|CP032426.1_685964_686861_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|CP032426.1_686911_687268_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|CP032426.1_687509_687875_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|CP032426.1_688167_689154_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|CP032426.1_689223_689706_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|CP032426.1_689801_690101_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|CP032426.1_690090_690495_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|CP032426.1_690497_690803_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCA_002165115.2_ASM216511v2	CP032426	Escherichia coli strain SCEC020001 chromosome, complete genome	4	1168651-1169167	2,3,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,8,8	8	Orphan	cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|47aa|up_1|CP032426.1_1167360_1167501_-,NA	NA|434aa|up_9|CP032426.1_1158057_1159359_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|CP032426.1_1159406_1161641_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|CP032426.1_1161718_1161967_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|CP032426.1_1161966_1162302_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|CP032426.1_1162372_1163164_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|CP032426.1_1163391_1165029_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|CP032426.1_1165116_1166415_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|CP032426.1_1166474_1167347_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|CP032426.1_1167360_1167501_-	NA	NA|224aa|up_0|CP032426.1_1167639_1168311_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|426aa|down_0|CP032426.1_1171308_1172586_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_1|CP032426.1_1172904_1173690_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_2|CP032426.1_1173759_1175214_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_3|CP032426.1_1175307_1176645_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_4|CP032426.1_1176622_1177402_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_5|CP032426.1_1177398_1178259_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_6|CP032426.1_1178406_1178982_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_7|CP032426.1_1178998_1179259_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_8|CP032426.1_1179249_1180521_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|down_9|CP032426.1_1180598_1180964_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)
GCA_002165115.2_ASM216511v2	CP032426	Escherichia coli strain SCEC020001 chromosome, complete genome	5	1191551-1192190	4,3,2	CRISPRCasFinder,PILER-CR,CRT	no	cas5,cas6e,cas1,cas2	cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	TGTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG	30,28,29	0	0	NA	NA	I-E:I-E:I-E	9,9,10	10	Unclear	cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|424aa|up_9|CP032426.1_1179249_1180521_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|up_8|CP032426.1_1180598_1180964_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_7|CP032426.1_1181279_1183079_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_6|CP032426.1_1183078_1184791_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_5|CP032426.1_1184864_1185599_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_4|CP032426.1_1185863_1186016_+	pfam01848, HOK_GEF, Hok/gef family	cas5|249aa|up_3|CP032426.1_1188866_1189613_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|CP032426.1_1189594_1190245_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|CP032426.1_1190241_1191165_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP032426.1_1191161_1191455_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|CP032426.1_1192210_1193248_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP032426.1_1193499_1194408_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|CP032426.1_1194409_1195837_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP032426.1_1195836_1196442_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|CP032426.1_1196491_1196815_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP032426.1_1197008_1197320_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP032426.1_1197338_1198049_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP032426.1_1198048_1198528_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP032426.1_1198524_1199574_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP032426.1_1199554_1200316_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_002165115.2_ASM216511v2	CP032426	Escherichia coli strain SCEC020001 chromosome, complete genome	6	1694520-1694637	5	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|105aa|up_4|CP032426.1_1689600_1689915_-,NA	NA|397aa|up_9|CP032426.1_1682605_1683796_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_8|CP032426.1_1683792_1685052_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_7|CP032426.1_1685041_1686670_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_6|CP032426.1_1686942_1688301_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_5|CP032426.1_1688305_1689382_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|105aa|up_4|CP032426.1_1689600_1689915_-	NA	NA|69aa|up_3|CP032426.1_1691913_1692120_-	PRK09729, PRK09729, hypothetical protein; Provisional	NA|217aa|up_2|CP032426.1_1692334_1692985_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|CP032426.1_1693038_1693293_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|CP032426.1_1693292_1694423_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|CP032426.1_1694656_1696942_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|CP032426.1_1697637_1701390_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|CP032426.1_1701517_1702240_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|CP032426.1_1702386_1705014_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|CP032426.1_1705162_1706851_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|CP032426.1_1706847_1707471_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1535aa|down_6|CP032426.1_1707404_1712009_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|CP032426.1_1712009_1713659_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|CP032426.1_1713663_1714440_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|CP032426.1_1714513_1715698_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCA_002165115.2_ASM216511v2	CP032426	Escherichia coli strain SCEC020001 chromosome, complete genome	7	2376096-2376219	6	CRISPRCasFinder	no	DEDDh	cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|30aa|down_7|CP032426.1_2385115_2385205_+	NA|471aa|up_9|CP032426.1_2365550_2366963_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|CP032426.1_2367518_2367728_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|CP032426.1_2368183_2368810_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|CP032426.1_2368830_2370933_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|CP032426.1_2370936_2371584_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|CP032426.1_2371647_2372316_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|CP032426.1_2372312_2373098_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|CP032426.1_2373101_2373914_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|CP032426.1_2373925_2375530_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|CP032426.1_2375655_2375961_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|CP032426.1_2376533_2377790_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|CP032426.1_2377830_2379204_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|CP032426.1_2379418_2380060_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|CP032426.1_2380099_2381248_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|CP032426.1_2381538_2382750_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|CP032426.1_2382862_2383795_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|CP032426.1_2383791_2384817_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|CP032426.1_2385115_2385205_+	NA	NA|390aa|down_8|CP032426.1_2385370_2386540_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|CP032426.1_2386685_2387267_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCA_002165115.2_ASM216511v2	CP032426	Escherichia coli strain SCEC020001 chromosome, complete genome	9	3338699-3338843	8	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|94aa|up_8|CP032426.1_3334084_3334366_+,NA|177aa|up_6|CP032426.1_3334896_3335427_-,NA|84aa|up_5|CP032426.1_3335317_3335569_-,NA|62aa|up_4|CP032426.1_3335623_3335809_-,NA|56aa|up_3|CP032426.1_3335741_3335909_+,NA	NA|64aa|up_9|CP032426.1_3333882_3334074_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|94aa|up_8|CP032426.1_3334084_3334366_+	NA	NA|74aa|up_7|CP032426.1_3334464_3334686_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|177aa|up_6|CP032426.1_3334896_3335427_-	NA	NA|84aa|up_5|CP032426.1_3335317_3335569_-	NA	NA|62aa|up_4|CP032426.1_3335623_3335809_-	NA	NA|56aa|up_3|CP032426.1_3335741_3335909_+	NA	NA|73aa|up_2|CP032426.1_3335948_3336167_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|CP032426.1_3336144_3337215_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|CP032426.1_3337349_3338633_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|CP032426.1_3338866_3341128_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|CP032426.1_3341310_3342744_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|CP032426.1_3342819_3343872_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|CP032426.1_3344055_3345009_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|CP032426.1_3345049_3346045_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|CP032426.1_3346199_3347018_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|CP032426.1_3347018_3348077_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|CP032426.1_3348079_3348769_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|CP032426.1_3348768_3349542_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|CP032426.1_3349708_3349858_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCA_002165115.2_ASM216511v2	CP032426	Escherichia coli strain SCEC020001 chromosome, complete genome	10	3867907-3868060	9	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	CGCCTTATCCGGCCTACCGATCCAGCACAGGTTTGTAGGCATGATAAGACGCG	53	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|150aa|down_8|CP032426.1_3877637_3878087_-	NA|352aa|up_9|CP032426.1_3857732_3858788_+	PRK10159, PRK10159, phosphoporin PhoE	NA|134aa|up_8|CP032426.1_3858826_3859228_-	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|415aa|up_7|CP032426.1_3859285_3860530_-	PRK05077, frsA, esterase FrsA	NA|153aa|up_6|CP032426.1_3860621_3861080_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_5|CP032426.1_3861340_3862798_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|89aa|up_4|CP032426.1_3863154_3863421_-	PRK09588, PRK09588, hypothetical protein; Reviewed	NA|151aa|up_3|CP032426.1_3863727_3864180_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|352aa|up_2|CP032426.1_3864176_3865232_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|263aa|up_1|CP032426.1_3865302_3866091_-	PRK06778, PRK06778, hypothetical protein; Validated	NA|580aa|up_0|CP032426.1_3866032_3867772_+	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|166aa|down_0|CP032426.1_3868089_3868587_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|253aa|down_1|CP032426.1_3868762_3869521_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|247aa|down_2|CP032426.1_3869812_3870553_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_3|CP032426.1_3870523_3871291_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|193aa|down_4|CP032426.1_3871496_3872075_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|815aa|down_5|CP032426.1_3872314_3874759_+	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|158aa|down_6|CP032426.1_3874801_3875275_-	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|257aa|down_7|CP032426.1_3875428_3876199_+	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional	NA|150aa|down_8|CP032426.1_3877637_3878087_-	NA	NA|1020aa|down_9|CP032426.1_3878098_3881158_-	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane]
GCA_002165115.2_ASM216511v2	CP032426	Escherichia coli strain SCEC020001 chromosome, complete genome	11	4056111-4056226	10	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	AACGCCTGATGCGACGCTGACGCGTCTTATC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|393aa|up_9|CP032426.1_4044126_4045305_-	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter	NA|44aa|up_8|CP032426.1_4045406_4045538_-	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|552aa|up_7|CP032426.1_4045626_4047282_+	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|328aa|up_6|CP032426.1_4047445_4048429_+	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|537aa|up_5|CP032426.1_4048404_4050015_+	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|233aa|up_4|CP032426.1_4049998_4050697_+	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|255aa|up_3|CP032426.1_4050810_4051575_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|293aa|up_2|CP032426.1_4051660_4052539_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|567aa|up_1|CP032426.1_4052877_4054578_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_0|CP032426.1_4054588_4056091_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|down_0|CP032426.1_4056290_4056986_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|784aa|down_1|CP032426.1_4057060_4059412_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|down_2|CP032426.1_4059576_4062483_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|down_3|CP032426.1_4062494_4063154_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|272aa|down_4|CP032426.1_4063270_4064086_-	PRK09430, djlA, co-chaperone DjlA	NA|785aa|down_5|CP032426.1_4064340_4066695_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_6|CP032426.1_4066747_4068034_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_7|CP032426.1_4068033_4069023_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_8|CP032426.1_4069019_4069841_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|126aa|down_9|CP032426.1_4069843_4070221_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed
GCA_002165115.2_ASM216511v2	CP032426	Escherichia coli strain SCEC020001 chromosome, complete genome	12	4079139-4079271	4	PILER-CR	no		cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|126aa|up_9|CP032426.1_4069843_4070221_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|CP032426.1_4070227_4071070_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|CP032426.1_4071147_4071627_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|CP032426.1_4071818_4073681_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|CP032426.1_4073673_4074204_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|CP032426.1_4074311_4075643_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|CP032426.1_4075700_4075988_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|CP032426.1_4075984_4077271_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|CP032426.1_4077321_4078263_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|CP032426.1_4078277_4079048_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|CP032426.1_4079521_4081036_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|CP032426.1_4081066_4082209_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|CP032426.1_4082337_4083555_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|CP032426.1_4083628_4085182_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|CP032426.1_4085290_4086076_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|CP032426.1_4086081_4086672_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|CP032426.1_4086757_4087153_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|CP032426.1_4087413_4090635_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|CP032426.1_4090652_4091801_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|CP032426.1_4092256_4093078_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
