assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002165095.2_ASM216509v2	CP032892	Escherichia coli strain SCEC020022 chromosome, complete genome	1	670866-670983	1	CRISPRCasFinder	no		cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA|55aa|down_0|CP032892.1_671056_671221_-	NA|115aa|up_9|CP032892.1_658587_658932_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|CP032892.1_659120_660059_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|CP032892.1_660157_661147_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|CP032892.1_661168_662500_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|CP032892.1_662525_663734_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|CP032892.1_663767_666062_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|CP032892.1_666075_666465_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|CP032892.1_666536_667901_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|CP032892.1_668175_669507_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|CP032892.1_669534_670845_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|CP032892.1_671056_671221_-	NA	NA|234aa|down_1|CP032892.1_671243_671945_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|CP032892.1_672049_672946_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|CP032892.1_672996_673353_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|CP032892.1_673594_673960_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|CP032892.1_674252_675239_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|CP032892.1_675308_675791_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|CP032892.1_675886_676186_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|CP032892.1_676175_676580_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|CP032892.1_676582_676888_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCA_002165095.2_ASM216509v2	CP032892	Escherichia coli strain SCEC020022 chromosome, complete genome	2	1094094-1094671	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Unclear	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	9,9,9	9	Unclear	cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|47aa|up_1|CP032892.1_1092803_1092944_-,NA	NA|919aa|up_9|CP032892.1_1080687_1083444_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|CP032892.1_1083500_1084802_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|CP032892.1_1084849_1087084_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|CP032892.1_1087161_1087410_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|CP032892.1_1087409_1087745_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|CP032892.1_1087815_1088607_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|CP032892.1_1088834_1090472_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|CP032892.1_1090559_1091858_+	PRK00077, eno, enolase; Provisional	NA|47aa|up_1|CP032892.1_1092803_1092944_-	NA	NA|224aa|up_0|CP032892.1_1093082_1093754_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|CP032892.1_1095309_1096788_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|CP032892.1_1096814_1098092_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|CP032892.1_1098410_1099196_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|CP032892.1_1099265_1100720_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|CP032892.1_1100813_1102151_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|CP032892.1_1102128_1102908_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|CP032892.1_1102904_1103765_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|CP032892.1_1103912_1104488_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|CP032892.1_1104504_1104765_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|CP032892.1_1104755_1106027_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCA_002165095.2_ASM216509v2	CP032892	Escherichia coli strain SCEC020022 chromosome, complete genome	3	1120374-1121561	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	19,19,19	19	TypeI-E	cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|245aa|up_9|CP032892.1_1110370_1111105_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|CP032892.1_1111369_1111522_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|CP032892.1_1111715_1114415_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|CP032892.1_1114512_1116075_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|180aa|up_5|CP032892.1_1116071_1116611_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|CP032892.1_1116622_1117678_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|CP032892.1_1117688_1118435_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|CP032892.1_1118416_1119067_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|CP032892.1_1119063_1119984_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP032892.1_1119983_1120277_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|CP032892.1_1121642_1122680_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP032892.1_1122931_1123840_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|CP032892.1_1123841_1125269_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP032892.1_1125268_1125874_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|CP032892.1_1125923_1126247_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP032892.1_1126440_1126752_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP032892.1_1126770_1127481_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP032892.1_1127480_1127960_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP032892.1_1127956_1129006_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP032892.1_1128986_1129748_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_002165095.2_ASM216509v2	CP032892	Escherichia coli strain SCEC020022 chromosome, complete genome	4	2283775-2283898	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA|30aa|down_7|CP032892.1_2292794_2292884_+	NA|471aa|up_9|CP032892.1_2273228_2274641_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|CP032892.1_2275197_2275407_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|CP032892.1_2275862_2276489_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|CP032892.1_2276509_2278612_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|CP032892.1_2278615_2279263_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|CP032892.1_2279326_2279995_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|CP032892.1_2279991_2280777_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|CP032892.1_2280780_2281593_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|CP032892.1_2281604_2283209_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|CP032892.1_2283334_2283640_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|CP032892.1_2284212_2285469_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|CP032892.1_2285509_2286883_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|CP032892.1_2287097_2287739_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|CP032892.1_2287778_2288927_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|CP032892.1_2289217_2290429_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|CP032892.1_2290541_2291474_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|CP032892.1_2291470_2292496_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|CP032892.1_2292794_2292884_+	NA	NA|390aa|down_8|CP032892.1_2293049_2294219_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|CP032892.1_2294364_2294946_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCA_002165095.2_ASM216509v2	CP032892	Escherichia coli strain SCEC020022 chromosome, complete genome	6	3272242-3272381	6	CRISPRCasFinder	no		cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCG	47	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|330aa|up_9|CP032892.1_3260140_3261130_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|CP032892.1_3261526_3262435_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|CP032892.1_3262626_3264648_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|CP032892.1_3265226_3265904_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|CP032892.1_3265896_3266652_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|CP032892.1_3266638_3267793_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|CP032892.1_3267789_3268830_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|CP032892.1_3268916_3270206_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|CP032892.1_3270264_3270741_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|CP032892.1_3270892_3272176_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|CP032892.1_3272409_3274671_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|CP032892.1_3274853_3276287_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|CP032892.1_3276362_3277415_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|CP032892.1_3277598_3278552_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|CP032892.1_3278592_3279588_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|CP032892.1_3279742_3280561_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|CP032892.1_3280561_3281620_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|CP032892.1_3281622_3282312_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|CP032892.1_3282311_3283085_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|CP032892.1_3283250_3283400_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCA_002165095.2_ASM216509v2	CP032892	Escherichia coli strain SCEC020022 chromosome, complete genome	7	3511350-3511446	7	CRISPRCasFinder	no		cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|231aa|up_9|CP032892.1_3503135_3503828_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|CP032892.1_3504047_3504590_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|CP032892.1_3505070_3505937_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|CP032892.1_3505938_3506151_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|CP032892.1_3506258_3506780_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|CP032892.1_3506815_3508201_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|CP032892.1_3508374_3508869_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|CP032892.1_3508871_3509594_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|CP032892.1_3509711_3510221_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|CP032892.1_3510217_3511285_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|CP032892.1_3511489_3512383_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|CP032892.1_3512379_3513195_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|CP032892.1_3513205_3514465_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|CP032892.1_3514474_3516142_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|CP032892.1_3516458_3517508_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|CP032892.1_3517529_3518765_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|CP032892.1_3518775_3519561_+	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|382aa|down_7|CP032892.1_3519689_3520835_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|CP032892.1_3520856_3522158_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|CP032892.1_3522214_3523576_-	PRK08044, PRK08044, allantoinase AllB
