assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002164635.3_ASM216463v3	CP022229	Escherichia coli strain WCHEC96200 chromosome, complete genome	1	285452-285575	1	CRISPRCasFinder	no	DEDDh	c2c9_V-U4,DEDDh,DinG,cas3,RT,WYL,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,DEDDh,DinG,cas3,RT,WYL,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|75aa|down_7|CP022229.2_294161_294386_-,NA|30aa|down_8|CP022229.2_294472_294562_+	NA|471aa|up_9|CP022229.2_274904_276317_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|CP022229.2_276873_277083_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|CP022229.2_277538_278165_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|CP022229.2_278185_280288_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|CP022229.2_280291_280939_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|CP022229.2_281002_281671_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|CP022229.2_281667_282453_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|CP022229.2_282456_283269_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|CP022229.2_283280_284885_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|CP022229.2_285010_285316_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|CP022229.2_285890_287147_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|CP022229.2_287187_288561_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|CP022229.2_288775_289417_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|CP022229.2_289456_290605_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|CP022229.2_290895_292107_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|CP022229.2_292219_293152_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|CP022229.2_293148_294174_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|75aa|down_7|CP022229.2_294161_294386_-	NA	NA|30aa|down_8|CP022229.2_294472_294562_+	NA	NA|390aa|down_9|CP022229.2_294727_295897_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
GCA_002164635.3_ASM216463v3	CP022229	Escherichia coli strain WCHEC96200 chromosome, complete genome	3	2365031-2365180	3	CRISPRCasFinder	no		c2c9_V-U4,DEDDh,DinG,cas3,RT,WYL,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,DEDDh,DinG,cas3,RT,WYL,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|532aa|down_6|CP022229.2_2372277_2373873_-	NA|340aa|up_9|CP022229.2_2353223_2354243_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_8|CP022229.2_2354246_2354810_-	PRK09825, idnK, gluconokinase	NA|344aa|up_7|CP022229.2_2355026_2356058_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_6|CP022229.2_2356081_2356846_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_5|CP022229.2_2356908_2358228_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_4|CP022229.2_2358294_2359293_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|501aa|up_3|CP022229.2_2359370_2360873_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|CP022229.2_2361033_2362116_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|CP022229.2_2362115_2363216_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|CP022229.2_2363482_2364994_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|CP022229.2_2365347_2365791_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|CP022229.2_2365790_2368646_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|399aa|down_2|CP022229.2_2368701_2369898_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|CP022229.2_2370090_2370594_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|CP022229.2_2370639_2371056_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|CP022229.2_2371217_2372222_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|532aa|down_6|CP022229.2_2372277_2373873_-	NA	NA|151aa|down_7|CP022229.2_2373995_2374448_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_8|CP022229.2_2374592_2375186_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|238aa|down_9|CP022229.2_2375256_2375970_+	PRK12742, PRK12742, SDR family oxidoreductase
GCA_002164635.3_ASM216463v3	CP022229	Escherichia coli strain WCHEC96200 chromosome, complete genome	4	4129968-4130301	1,4,1	PILER-CR,CRISPRCasFinder,CRT	no		c2c9_V-U4,DEDDh,DinG,cas3,RT,WYL,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	4,5,5	5	Orphan	c2c9_V-U4,DEDDh,DinG,cas3,RT,WYL,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|919aa|up_9|CP022229.2_4116561_4119318_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|CP022229.2_4119374_4120676_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|CP022229.2_4120723_4122958_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|CP022229.2_4123035_4123284_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|CP022229.2_4123283_4123619_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|CP022229.2_4123690_4124482_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|CP022229.2_4124709_4126347_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|CP022229.2_4126433_4127732_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_1|CP022229.2_4127791_4128664_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_0|CP022229.2_4128957_4129629_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|CP022229.2_4130938_4132417_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|CP022229.2_4132443_4133721_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|CP022229.2_4134039_4134825_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|CP022229.2_4134894_4136349_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|CP022229.2_4136442_4137780_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|CP022229.2_4137757_4138537_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|CP022229.2_4138533_4139394_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|450aa|down_7|CP022229.2_4139493_4140842_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|192aa|down_8|CP022229.2_4140976_4141552_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_9|CP022229.2_4141568_4141829_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]
GCA_002164635.3_ASM216463v3	CP022229	Escherichia coli strain WCHEC96200 chromosome, complete genome	5	4157439-4158013	2,5,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	c2c9_V-U4,DEDDh,DinG,cas3,RT,WYL,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAA,GTGTTCCCCGCGCCAGCGGGGATAAA,GTGTTCCCCGCGCCAGCGGGGATAAA	26,26,26	0	0	NA	NA	I-E:I-E:I-E	8,9,9	9	TypeI-E	c2c9_V-U4,DEDDh,DinG,cas3,RT,WYL,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|245aa|up_9|CP022229.2_4147434_4148169_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|CP022229.2_4148433_4148586_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|CP022229.2_4148780_4151480_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|CP022229.2_4151577_4153140_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|CP022229.2_4153136_4153673_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|CP022229.2_4153687_4154743_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|CP022229.2_4154753_4155500_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|CP022229.2_4155481_4156132_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|CP022229.2_4156128_4157052_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP022229.2_4157048_4157342_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|CP022229.2_4158097_4159135_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP022229.2_4159386_4160295_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|CP022229.2_4160296_4161724_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP022229.2_4161723_4162329_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|CP022229.2_4162378_4162702_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP022229.2_4162895_4163207_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP022229.2_4163225_4163936_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP022229.2_4163935_4164415_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP022229.2_4164411_4165461_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP022229.2_4165441_4166203_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
