assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002097595.2_ASM209759v2	CP015447	Staphylococcus aureus strain M92 chromosome, complete genome	1	434691-434791	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|128aa|up_8|CP015447.2_427297_427681_-,NA|98aa|up_6|CP015447.2_428634_428928_-,NA|34aa|up_1|CP015447.2_433915_434017_+,NA|86aa|up_0|CP015447.2_434224_434482_-,NA|221aa|down_1|CP015447.2_435881_436544_-	NA|194aa|up_9|CP015447.2_426650_427232_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_8|CP015447.2_427297_427681_-	NA	NA|209aa|up_7|CP015447.2_427935_428562_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|98aa|up_6|CP015447.2_428634_428928_-	NA	NA|508aa|up_5|CP015447.2_429006_430530_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_4|CP015447.2_430545_431115_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_3|CP015447.2_431606_432362_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_2|CP015447.2_432442_433831_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_1|CP015447.2_433915_434017_+	NA	NA|86aa|up_0|CP015447.2_434224_434482_-	NA	NA|319aa|down_0|CP015447.2_434807_435764_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|CP015447.2_435881_436544_-	NA	NA|136aa|down_2|CP015447.2_436686_437094_-	pfam11181, YflT, Heat induced stress protein YflT	NA|192aa|down_3|CP015447.2_437606_438182_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|CP015447.2_438181_439450_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|CP015447.2_439487_440954_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|CP015447.2_440978_442520_+	PRK00074, guaA, GMP synthase; Reviewed	NA|398aa|down_7|CP015447.2_442587_443781_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|67aa|down_8|CP015447.2_443807_444008_-	pfam11372, DUF3173, Domain of unknown function (DUF3173)	NA|77aa|down_9|CP015447.2_444505_444736_-	pfam12645, HTH_16, Helix-turn-helix domain
GCA_002097595.2_ASM209759v2	CP015447	Staphylococcus aureus strain M92 chromosome, complete genome	2	702097-702189	2	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|36aa|up_4|CP015447.2_698580_698688_+,NA|103aa|up_1|CP015447.2_700799_701108_-,NA|169aa|down_4|CP015447.2_705936_706443_+,NA|239aa|down_5|CP015447.2_706604_707321_+	NA|179aa|up_9|CP015447.2_693931_694468_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_8|CP015447.2_694636_695113_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_7|CP015447.2_695152_696448_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_6|CP015447.2_696475_696997_+	pfam08741, YwhD, YwhD family	NA|337aa|up_5|CP015447.2_697495_698506_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_4|CP015447.2_698580_698688_+	NA	NA|128aa|up_3|CP015447.2_698813_699197_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_2|CP015447.2_699193_700855_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|103aa|up_1|CP015447.2_700799_701108_-	NA	NA|212aa|up_0|CP015447.2_701243_701879_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_0|CP015447.2_702317_703145_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|CP015447.2_703292_704243_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|CP015447.2_704297_705017_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|CP015447.2_705000_705801_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|CP015447.2_705936_706443_+	NA	NA|239aa|down_5|CP015447.2_706604_707321_+	NA	NA|263aa|down_6|CP015447.2_707489_708278_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|CP015447.2_708528_708903_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|CP015447.2_709850_710780_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|CP015447.2_710974_711199_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCA_002097595.2_ASM209759v2	CP015447	Staphylococcus aureus strain M92 chromosome, complete genome	3	817912-817994	3	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|69aa|up_9|CP015447.2_804511_804718_+,NA|34aa|down_1|CP015447.2_819450_819552_+,NA|82aa|down_3|CP015447.2_821200_821446_-,NA|89aa|down_6|CP015447.2_823246_823513_+	NA|69aa|up_9|CP015447.2_804511_804718_+	NA	NA|237aa|up_8|CP015447.2_804805_805516_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|CP015447.2_805499_806504_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|CP015447.2_806977_808918_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|CP015447.2_809188_811072_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|CP015447.2_811083_812865_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|CP015447.2_813086_814064_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|CP015447.2_814056_815571_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|CP015447.2_815811_816870_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|CP015447.2_817220_817763_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|CP015447.2_818442_819360_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|CP015447.2_819450_819552_+	NA	NA|502aa|down_2|CP015447.2_819629_821135_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|82aa|down_3|CP015447.2_821200_821446_-	NA	NA|167aa|down_4|CP015447.2_821475_821976_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_5|CP015447.2_821995_822862_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|89aa|down_6|CP015447.2_823246_823513_+	NA	NA|133aa|down_7|CP015447.2_823662_824061_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_8|CP015447.2_824023_826129_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_9|CP015447.2_826246_827218_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit
GCA_002097595.2_ASM209759v2	CP015447	Staphylococcus aureus strain M92 chromosome, complete genome	4	858964-859044	4	CRISPRCasFinder	no	cas3	csa3,cas3,DEDDh,DinG,WYL	Unclear	TTCTTTATGTTGGGGCCCCGCCAACT	26	1	9	858990-859018|858990-859018|858990-859018|858990-859018|858990-859018|858990-859018|858990-859018|858990-859018|858990-859018	CP015447.2_396242-396214|CP015447.2_1852124-1852096|CP015447.2_317974-317946|CP015447.2_907622-907650|CP015447.2_990528-990556|CP015447.2_1189009-1188981|CP015447.2_1666825-1666853|CP015447.2_2061699-2061727|CP015447.2_2728368-2728340	NA	1	1	Unclear	csa3,cas3,DEDDh,DinG,WYL	NA|35aa|up_7|CP015447.2_849877_849982_+,NA|36aa|up_5|CP015447.2_851414_851522_+,NA|70aa|down_5|CP015447.2_864326_864536_-	NA|191aa|up_9|CP015447.2_846318_846891_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|CP015447.2_847304_849836_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|CP015447.2_849877_849982_+	NA	NA|370aa|up_6|CP015447.2_850150_851261_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|CP015447.2_851414_851522_+	NA	NA|280aa|up_4|CP015447.2_851669_852509_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|CP015447.2_852682_853333_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|CP015447.2_853329_853566_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|CP015447.2_853834_855820_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|CP015447.2_855827_858674_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|CP015447.2_859280_860213_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|CP015447.2_860218_861058_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|CP015447.2_861065_861551_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|CP015447.2_861558_862998_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|CP015447.2_863064_864000_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|70aa|down_5|CP015447.2_864326_864536_-	NA	NA|304aa|down_6|CP015447.2_864879_865791_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_7|CP015447.2_865787_866783_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_8|CP015447.2_866892_867837_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_9|CP015447.2_868409_868997_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed
GCA_002097595.2_ASM209759v2	CP015447	Staphylococcus aureus strain M92 chromosome, complete genome	6	907556-907637	6	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	907580-907613|907580-907613	CP015447.2_1398568-1398535|CP015447.2_1487721-1487754	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|38aa|up_1|CP015447.2_906458_906572_+,NA|38aa|down_0|CP015447.2_907870_907984_+	NA|206aa|up_9|CP015447.2_901313_901931_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|CP015447.2_902085_902580_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|CP015447.2_902978_903401_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|CP015447.2_903548_904265_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|CP015447.2_904347_904887_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|CP015447.2_905036_905357_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|CP015447.2_905500_905857_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|CP015447.2_906014_906395_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|CP015447.2_906458_906572_+	NA	NA|293aa|up_0|CP015447.2_906573_907452_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_0|CP015447.2_907870_907984_+	NA	NA|129aa|down_1|CP015447.2_908193_908580_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_2|CP015447.2_908572_908869_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_3|CP015447.2_909118_910144_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_4|CP015447.2_910136_910832_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_5|CP015447.2_910849_911671_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_6|CP015447.2_911814_913035_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_7|CP015447.2_913122_913851_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|down_8|CP015447.2_913874_914603_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|245aa|down_9|CP015447.2_914777_915512_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCA_002097595.2_ASM209759v2	CP015447	Staphylococcus aureus strain M92 chromosome, complete genome	7	1104531-1104618	7	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|40aa|up_0|CP015447.2_1104407_1104527_+,NA|45aa|down_0|CP015447.2_1104627_1104762_-,NA|432aa|down_1|CP015447.2_1104913_1106209_+,NA|68aa|down_2|CP015447.2_1106229_1106433_-	NA|730aa|up_9|CP015447.2_1092985_1095175_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_8|CP015447.2_1095153_1096638_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_7|CP015447.2_1096630_1097659_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_6|CP015447.2_1097661_1098228_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_5|CP015447.2_1098242_1099721_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_4|CP015447.2_1099742_1100990_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_3|CP015447.2_1101254_1102061_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_2|CP015447.2_1102053_1103454_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_1|CP015447.2_1103468_1104044_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|40aa|up_0|CP015447.2_1104407_1104527_+	NA	NA|45aa|down_0|CP015447.2_1104627_1104762_-	NA	NA|432aa|down_1|CP015447.2_1104913_1106209_+	NA	NA|68aa|down_2|CP015447.2_1106229_1106433_-	NA	NA|391aa|down_3|CP015447.2_1106633_1107806_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_4|CP015447.2_1107859_1108402_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_5|CP015447.2_1108555_1108822_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_6|CP015447.2_1108824_1110543_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_7|CP015447.2_1110779_1111013_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_8|CP015447.2_1111210_1112572_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_9|CP015447.2_1112568_1113588_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
GCA_002097595.2_ASM209759v2	CP015447	Staphylococcus aureus strain M92 chromosome, complete genome	8	1184870-1185171	1,1	CRT,PILER-CR	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	TGCAAGTTGGNGNGGNNCCNA,TCAGCATACAAAAATGTGCAAGTTGGCGGGGCCCCAACATAGAGAAATAGGA	21,52	4	7	1184891-1184925|1185004-1185038|1185116-1185150|1185116-1185150|1185116-1185150|1185116-1185150|1185019-1185038	CP015447.2_1184835-1184869|CP015447.2_1184835-1184869|CP015447.2_2167101-2167067|CP015447.2_817894-817928|CP015447.2_864518-864484|CP015447.2_2843494-2843460|CP015447.2_1184850-1184869	NA:NA	5,2	5	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|56aa|up_6|CP015447.2_1180607_1180775_+,NA|31aa|up_4|CP015447.2_1181614_1181707_-,NA|169aa|up_2|CP015447.2_1182739_1183246_+,NA|62aa|down_0|CP015447.2_1185326_1185512_-,NA|73aa|down_1|CP015447.2_1185721_1185940_-,NA|78aa|down_2|CP015447.2_1186133_1186367_-,NA|49aa|down_4|CP015447.2_1188475_1188622_+,NA|75aa|down_5|CP015447.2_1188578_1188803_+	NA|267aa|up_9|CP015447.2_1178584_1179385_+	PRK00865, PRK00865, glutamate racemase; Provisional	NA|196aa|up_8|CP015447.2_1179396_1179984_+	PRK14822, PRK14822, XTP/dITP diphosphatase	NA|168aa|up_7|CP015447.2_1179976_1180480_+	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|56aa|up_6|CP015447.2_1180607_1180775_+	NA	NA|110aa|up_5|CP015447.2_1180968_1181298_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|31aa|up_4|CP015447.2_1181614_1181707_-	NA	NA|134aa|up_3|CP015447.2_1181666_1182068_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_2|CP015447.2_1182739_1183246_+	NA	NA|166aa|up_1|CP015447.2_1183504_1184002_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_0|CP015447.2_1184155_1184506_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|down_0|CP015447.2_1185326_1185512_-	NA	NA|73aa|down_1|CP015447.2_1185721_1185940_-	NA	NA|78aa|down_2|CP015447.2_1186133_1186367_-	NA	NA|320aa|down_3|CP015447.2_1186843_1187803_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|down_4|CP015447.2_1188475_1188622_+	NA	NA|75aa|down_5|CP015447.2_1188578_1188803_+	NA	NA|239aa|down_6|CP015447.2_1189303_1190020_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_7|CP015447.2_1190127_1190853_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_8|CP015447.2_1190947_1191673_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_9|CP015447.2_1192110_1193112_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional
GCA_002097595.2_ASM209759v2	CP015447	Staphylococcus aureus strain M92 chromosome, complete genome	9	1189043-1189128	8	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	5	1189073-1189098|1189073-1189098|1189073-1189098|1189073-1189098|1189073-1189098	CP015447.2_317814-317839|CP015447.2_827440-827465|CP015447.2_827384-827409|CP015447.2_827496-827521|CP015447.2_971003-971028	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|169aa|up_8|CP015447.2_1182739_1183246_+,NA|62aa|up_5|CP015447.2_1185326_1185512_-,NA|73aa|up_4|CP015447.2_1185721_1185940_-,NA|78aa|up_3|CP015447.2_1186133_1186367_-,NA|49aa|up_1|CP015447.2_1188475_1188622_+,NA|75aa|up_0|CP015447.2_1188578_1188803_+,NA|76aa|down_6|CP015447.2_1196102_1196330_+	NA|134aa|up_9|CP015447.2_1181666_1182068_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_8|CP015447.2_1182739_1183246_+	NA	NA|166aa|up_7|CP015447.2_1183504_1184002_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_6|CP015447.2_1184155_1184506_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_5|CP015447.2_1185326_1185512_-	NA	NA|73aa|up_4|CP015447.2_1185721_1185940_-	NA	NA|78aa|up_3|CP015447.2_1186133_1186367_-	NA	NA|320aa|up_2|CP015447.2_1186843_1187803_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|up_1|CP015447.2_1188475_1188622_+	NA	NA|75aa|up_0|CP015447.2_1188578_1188803_+	NA	NA|239aa|down_0|CP015447.2_1189303_1190020_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|CP015447.2_1190127_1190853_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|CP015447.2_1190947_1191673_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|CP015447.2_1192110_1193112_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_4|CP015447.2_1193134_1194067_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|502aa|down_5|CP015447.2_1194289_1195795_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_6|CP015447.2_1196102_1196330_+	NA	NA|316aa|down_7|CP015447.2_1196634_1197582_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_8|CP015447.2_1197830_1198019_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_9|CP015447.2_1198930_1199065_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCA_002097595.2_ASM209759v2	CP015447	Staphylococcus aureus strain M92 chromosome, complete genome	10	2412694-2412844	9	CRISPRCasFinder	no	csa3	csa3,cas3,DEDDh,DinG,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|77aa|up_5|CP015447.2_2407565_2407796_-,NA|364aa|up_0|CP015447.2_2411584_2412676_+,NA|35aa|down_0|CP015447.2_2413175_2413280_-,NA|31aa|down_3|CP015447.2_2415391_2415484_+	NA|237aa|up_9|CP015447.2_2403175_2403886_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|CP015447.2_2404006_2404450_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|CP015447.2_2404649_2405063_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|CP015447.2_2405520_2406894_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|CP015447.2_2407565_2407796_-	NA	NA|313aa|up_4|CP015447.2_2407826_2408765_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|CP015447.2_2409199_2409865_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|CP015447.2_2410016_2410337_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|CP015447.2_2410338_2411319_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|CP015447.2_2411584_2412676_+	NA	NA|35aa|down_0|CP015447.2_2413175_2413280_-	NA	NA|68aa|down_1|CP015447.2_2413704_2413908_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|379aa|down_2|CP015447.2_2413966_2415103_-	pfam02037, SAP, SAP domain	NA|31aa|down_3|CP015447.2_2415391_2415484_+	NA	NA|286aa|down_4|CP015447.2_2416188_2417046_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_5|CP015447.2_2417113_2417896_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_6|CP015447.2_2418127_2419933_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_7|CP015447.2_2420613_2422152_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_8|CP015447.2_2422186_2424319_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_9|CP015447.2_2424330_2424765_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]
GCA_002097595.2_ASM209759v2	CP015447	Staphylococcus aureus strain M92 chromosome, complete genome	11	2536734-2536927	2	CRT	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	16	2536757-2536789|2536757-2536789|2536757-2536789|2536757-2536789|2536757-2536789|2536757-2536789|2536813-2536848|2536813-2536848|2536813-2536848|2536813-2536848|2536813-2536848|2536872-2536904|2536872-2536904|2536872-2536904|2536872-2536904|2536872-2536904	CP015447.2_864428-864460|CP015447.2_1189062-1189030|CP015447.2_1398522-1398490|CP015447.2_1487767-1487799|CP015447.2_2050955-2050987|CP015447.2_2809194-2809226|CP015447.2_1189009-1188974|CP015447.2_1852124-1852089|CP015447.2_317974-317939|CP015447.2_1666825-1666860|CP015447.2_2061699-2061734|CP015447.2_864428-864460|CP015447.2_1189062-1189030|CP015447.2_1398522-1398490|CP015447.2_2050955-2050987|CP015447.2_2809194-2809226	NA	3	3	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|55aa|up_9|CP015447.2_2527261_2527426_+,NA|106aa|up_8|CP015447.2_2527670_2527988_+,NA|84aa|up_5|CP015447.2_2533112_2533364_+,NA|57aa|up_0|CP015447.2_2536503_2536674_+,NA	NA|55aa|up_9|CP015447.2_2527261_2527426_+	NA	NA|106aa|up_8|CP015447.2_2527670_2527988_+	NA	NA|1056aa|up_7|CP015447.2_2528174_2531342_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|CP015447.2_2531458_2532724_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|CP015447.2_2533112_2533364_+	NA	NA|255aa|up_4|CP015447.2_2533355_2534120_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|CP015447.2_2534281_2534722_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|CP015447.2_2534714_2535926_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|CP015447.2_2536027_2536378_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|CP015447.2_2536503_2536674_+	NA	NA|341aa|down_0|CP015447.2_2537068_2538091_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|CP015447.2_2538110_2538710_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|CP015447.2_2538716_2538950_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|CP015447.2_2538955_2539402_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|CP015447.2_2539415_2539901_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|CP015447.2_2539897_2541157_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|CP015447.2_2541219_2541714_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|CP015447.2_2541715_2542222_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|CP015447.2_2542252_2543257_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|CP015447.2_2543426_2544032_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
