The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP019594	Staphylococcus aureus strain GD1539 chromosome, complete genome	2793232	706731	714551	2793232		Hokovirus(16.67%)	10	NA	NA
ARH74158.1|706731_707787_-	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
ARH74159.1|707786_708473_-	DNA-binding response regulator	NA	NA	NA	NA	NA
ARH74160.1|708447_708921_-	DoxX family membrane protein	NA	NA	NA	NA	NA
ARH74161.1|709261_709702_-	hypothetical protein	NA	NA	NA	NA	NA
ARH74162.1|709982_710567_-	hypothetical protein	NA	NA	NA	NA	NA
ARH74163.1|710665_711379_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
ARH74164.1|711382_711802_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
ARH74165.1|711803_712472_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.1	1.8e-64
ARH74166.1|712822_713416_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	3.1e-39
ARH74167.1|713399_714551_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 2
CP019594	Staphylococcus aureus strain GD1539 chromosome, complete genome	2793232	726521	740837	2793232		uncultured_Caudovirales_phage(50.0%)	17	NA	NA
ARH74177.1|726521_727580_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.9	1.5e-20
ARH74178.1|727738_728281_+	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
ARH74179.1|728581_728749_+	nitrogen fixation protein NifR	NA	NA	NA	NA	NA
ARH74180.1|729017_729935_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.8e-07
ARH74181.1|730025_730133_+	hypothetical protein	NA	NA	NA	NA	NA
ARH74182.1|730204_731710_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
ARH74183.1|731771_731978_-	hypothetical protein	NA	NA	NA	NA	NA
ARH74184.1|732049_732550_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	66.2	2.7e-52
ARH74185.1|732569_733436_-	DMT family transporter	NA	NA	NA	NA	NA
ARH74186.2|733820_733970_+	ribonucleoside-diphosphate reductase	NA	NA	NA	NA	NA
ARH74187.1|734237_734636_+	protein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
ARH74188.1|734598_736704_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
ARH74189.1|736823_737795_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
AXB22680.1|737836_738019_+	hypothetical protein	NA	NA	NA	NA	NA
ARH74190.1|738164_739136_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	80.2	7.8e-141
ARH74191.1|739122_740079_+	iron ABC transporter permease	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.6e-05
ARH74192.1|740075_740837_+	ATP-binding cassette domain-containing protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.1	7.2e-17
>prophage 3
CP019594	Staphylococcus aureus strain GD1539 chromosome, complete genome	2793232	828332	873885	2793232	head,plate,tail,holin,terminase,portal,capsid,integrase	Staphylococcus_phage(76.56%)	67	823184:823199	880822:880837
823184:823199	attL	AAAGAATTACCAAAAG	NA	NA	NA	NA
ARH74282.2|828332_829574_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.8	6.3e-111
ARH74283.1|829563_830028_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
ARH74284.1|830178_831576_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
ARH74285.1|831643_832693_-|integrase	site-specific integrase	integrase	Q4ZBG5	Staphylococcus_virus	99.4	1.1e-201
ARH74286.1|832805_832985_+	excisionase	NA	A0EWN7	Staphylococcus_virus	100.0	8.3e-25
ARH74287.1|832964_833897_-	hypothetical protein	NA	A0EWN8	Staphylococcus_virus	100.0	3.9e-174
ARH74288.1|833928_834567_-	XRE family transcriptional regulator	NA	A0A0E3TAG1	Staphylococcus_phage	100.0	8.8e-117
ARH74289.1|834756_835011_+	XRE family transcriptional regulator	NA	B7T095	Staphylococcus_virus	100.0	1.8e-41
ARH74290.1|835026_835344_+	hypothetical protein	NA	S4V9P0	Staphylococcus_phage	81.2	1.4e-38
ARH74291.1|835306_835498_-	hypothetical protein	NA	NA	NA	NA	NA
ARH74292.1|835498_836287_+	phage antirepressor	NA	R9QSV3	Staphylococcus_phage	99.6	2.7e-144
ARH74293.1|836303_836498_+	hypothetical protein	NA	A0A1X9H0A2	Staphylococcus_phage	98.4	3.3e-19
ARH74294.1|836528_836672_+	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	91.3	1.8e-14
ARH74295.1|836692_837250_-	hypothetical protein	NA	A0A2H4IYS4	uncultured_Caudovirales_phage	54.5	1.7e-47
ARH74296.1|837320_837542_+	hypothetical protein	NA	A0A0F6N3I2	Staphylococcus_phage	100.0	1.5e-31
ARH74297.1|837534_837696_+	DUF1270 family protein	NA	A0A2I6PD92	Staphylococcus_phage	86.8	2.0e-17
ARH74298.1|837790_838117_+	DUF2482 family protein	NA	W5RAK4	Staphylococcus_phage	100.0	1.2e-53
ARH76230.1|838097_838358_+	DUF1108 family protein	NA	A0EWW8	Staphylococcus_phage	100.0	8.9e-44
ARH74299.1|838366_838630_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
ARH74300.1|840584_841505_+	recombinase	NA	A0A1V0E5D7	Staphylococcus_phage	99.7	8.6e-166
ARH74301.1|841585_842203_+	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	100.0	9.1e-87
ARH74302.1|842203_842674_+	single-stranded DNA-binding protein	NA	S4V682	Staphylococcus_phage	96.8	5.3e-79
ARH74303.1|842703_843555_+	DnaD domain protein	NA	A0EWX4	Staphylococcus_phage	95.2	3.6e-134
ARH74304.1|843561_843780_+	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
ARH74305.1|843788_844193_+	RusA family crossover junction endodeoxyribonuclease	NA	I1W657	Staphylococcus_phage	100.0	1.4e-72
ARH74306.1|844205_844574_+	hypothetical protein	NA	I1W656	Staphylococcus_phage	100.0	6.3e-51
ARH74307.1|844577_844820_+	hypothetical protein	NA	A0A2I6PDM0	Staphylococcus_phage	95.0	2.1e-39
ARH76231.2|844828_845197_+	acetyltransferase	NA	A0ZS31	Staphylococcus_virus	96.7	1.1e-60
ARH74308.1|845189_845438_+	DUF1024 family protein	NA	Q9B0F3	Staphylococcus_virus	97.6	1.2e-37
ARH74309.1|845430_845967_+	dUTPase	NA	A0A1P8L6E0	Staphylococcus_phage	100.0	2.1e-95
ARH74310.1|846003_846210_+	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
ARH74311.1|846206_846410_+	hypothetical protein	NA	A0A2I6PEQ8	Staphylococcus_phage	100.0	3.4e-30
ARH74312.1|846402_846639_+	hypothetical protein	NA	A0A2I6PEM4	Staphylococcus_phage	100.0	2.8e-36
ARH74313.1|846631_847018_+	hypothetical protein	NA	A0A1X9IGZ2	Staphylococcus_phage	100.0	3.0e-64
ARH74314.1|847014_847188_+	transcriptional regulator	NA	Q4ZBK0	Staphylococcus_phage	100.0	6.4e-22
ARH74315.1|847188_847590_+	hypothetical protein	NA	A0A2H4PQK5	Staphylococcus_phage	100.0	5.6e-69
ARH74316.1|847519_847774_-	hypothetical protein	NA	Q4ZB48	Staphylococcus_virus	85.7	7.0e-25
ARH74317.1|847942_848437_+|terminase	terminase	terminase	A0A0N9BAX3	Staphylococcus_phage	100.0	3.4e-84
ARH74318.1|848429_849653_+|terminase	PBSX family phage terminase large subunit	terminase	A0A0N9BAX9	Staphylococcus_phage	100.0	7.5e-242
ARH74319.1|849649_851074_+|portal	phage portal protein	portal	Q4ZBZ7	Staphylococcus_virus	100.0	6.2e-272
ARH74320.1|851042_851996_+|head	phage head morphogenesis protein	head	A0A0N7E0U6	Staphylococcus_phage	99.7	6.6e-177
ARH74321.1|851997_852204_+	hypothetical protein	NA	A0A0N9BB04	Staphylococcus_phage	100.0	3.2e-28
ARH74322.1|852306_852891_+	DUF4355 domain-containing protein	NA	A0A0N7E0U8	Staphylococcus_phage	100.0	1.3e-77
ARH74323.1|852907_853822_+|capsid	phage major capsid protein	capsid	A0A0H3U2U7	Staphylococcus_phage	100.0	1.2e-170
ARH74324.1|853982_854333_+|head,tail	phage head-tail adapter protein	head,tail	A0A0H3U2R5	Staphylococcus_phage	100.0	1.9e-60
ARH74325.1|854344_854680_+|head,tail	phage head-tail adapter protein	head,tail	A0A0E3TAH8	Staphylococcus_phage	100.0	8.8e-60
ARH74326.1|854666_855080_+	HK97 gp10 family phage protein	NA	A0A0N9BAY5	Staphylococcus_phage	100.0	1.1e-75
ARH74327.1|855092_855518_+	DUF3168 domain-containing protein	NA	Q4ZBQ9	Staphylococcus_phage	100.0	5.5e-75
ARH74328.1|855518_856076_+|tail	phage tail protein	tail	Q4ZBQ8	Staphylococcus_phage	100.0	8.2e-103
ARH74329.1|856142_856649_+	hypothetical protein	NA	Q4ZBQ7	Staphylococcus_phage	99.4	4.5e-92
ARH74330.1|856693_856978_+	hypothetical protein	NA	A0A0N7E0V9	Staphylococcus_phage	100.0	8.8e-45
ARH74331.1|856981_860125_+|terminase	terminase	terminase	Q4ZBY3	Staphylococcus_virus	100.0	0.0e+00
ARH74332.1|860139_861081_+|tail	phage tail protein	tail	Q4ZBQ4	Staphylococcus_phage	100.0	5.2e-182
ARH74333.1|861091_862978_+	peptidase	NA	Q4ZBQ3	Staphylococcus_phage	100.0	0.0e+00
ARH74334.1|862990_864889_+	hypothetical protein	NA	Q4ZBX7	Staphylococcus_virus	99.8	0.0e+00
ARH74335.1|864888_866712_+|plate	phage baseplate upper protein	plate	A0A0F6N3G2	Staphylococcus_phage	99.5	0.0e+00
ARH74336.1|866711_867089_+	DUF2977 domain-containing protein	NA	Q4ZBX4	Staphylococcus_virus	99.2	2.4e-53
ARH76232.1|867092_867266_+	XkdX family protein	NA	Q8LTH6	Staphylococcus_phage	100.0	1.7e-27
ARH74337.1|867306_867606_+	DUF2951 domain-containing protein	NA	Q4ZBP8	Staphylococcus_phage	100.0	1.3e-46
ARH74338.1|867742_869617_+	CHAP domain-containing protein	NA	Q4ZB20	Staphylococcus_virus	99.0	0.0e+00
ARH74339.1|869629_870802_+	DUF2479 domain-containing protein	NA	A9CRD3	Staphylococcus_phage	99.2	1.4e-197
ARH74340.1|870807_871203_+	hypothetical protein	NA	Q8SDS9	Staphylococcus_phage	100.0	1.6e-68
ARH74341.1|871258_871696_+|holin	phage holin	holin	B2ZZ05	Staphylococcus_phage	100.0	1.4e-73
ARH74342.1|871676_873122_+	CHAP domain-containing protein	NA	Q4ZDT0	Staphylococcus_virus	99.2	1.0e-293
ARH74343.1|873364_873517_+	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
ARH74344.1|873587_873698_+	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
ARH74345.1|873684_873885_+	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	100.0	3.7e-29
880822:880837	attR	AAAGAATTACCAAAAG	NA	NA	NA	NA
>prophage 4
CP019594	Staphylococcus aureus strain GD1539 chromosome, complete genome	2793232	955518	1008642	2793232	protease,tRNA,bacteriocin,holin	Streptococcus_phage(33.33%)	54	NA	NA
ARH74418.1|955518_956508_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
ARH74419.1|956802_957198_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
ARH74420.1|957568_958288_+	adaptor protein MecA	NA	NA	NA	NA	NA
ARH74421.1|958408_959395_+	competence protein CoiA	NA	NA	NA	NA	NA
ARH74422.1|959442_961251_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.4	1.2e-46
ARH74423.1|961710_962517_-	DsbA family protein	NA	NA	NA	NA	NA
ARH74424.1|962539_962905_-	globin	NA	NA	NA	NA	NA
ARH74425.1|963008_963602_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
ARH74426.1|963787_964135_+	hypothetical protein	NA	NA	NA	NA	NA
ARH74427.1|964151_964787_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
ARH74428.1|964803_965613_+	NAD(+) kinase	NA	NA	NA	NA	NA
ARH74429.1|965609_966464_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
ARH74430.1|966484_967870_+	magnesium transporter	NA	NA	NA	NA	NA
ARH74431.1|967879_969724_+	sodium:proton antiporter	NA	NA	NA	NA	NA
ARH74432.1|970001_970772_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
ARH74433.1|970968_972054_-	AI-2E family transporter	NA	NA	NA	NA	NA
ARH74434.1|972395_973964_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
ARH74435.1|974105_974864_+	esterase family protein	NA	NA	NA	NA	NA
ARH74436.1|975057_975567_+	hypothetical protein	NA	NA	NA	NA	NA
ARH74437.1|975679_976888_-	MFS transporter	NA	NA	NA	NA	NA
ARH74438.1|976847_978023_-	diacylglycerol beta-glucosyltransferase	NA	NA	NA	NA	NA
ARH74439.1|978453_979938_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
ARH74440.1|979918_980179_+	hypothetical protein	NA	NA	NA	NA	NA
ARH74441.1|980178_981741_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.0	3.8e-36
ARH76234.1|982042_982846_+	hypothetical protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
ARH74442.1|983064_985389_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	27.1	8.1e-11
ARH74443.1|985405_986764_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
ARH74444.1|986902_988414_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
ARH74445.1|988902_989472_-	competence protein ComK	NA	NA	NA	NA	NA
ARH74446.1|989681_989900_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
ARH74447.1|989980_990967_-	lipoate--protein ligase	NA	NA	NA	NA	NA
ARH74448.1|991165_991342_+	DUF2187 domain-containing protein	NA	NA	NA	NA	NA
ARH74449.1|991356_991959_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
ARH74450.2|992258_992336_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
ARH74451.1|992970_993255_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
ARH74452.1|993298_995263_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
ARH74453.1|995265_995586_+	YxeA family protein	NA	NA	NA	NA	NA
ARH74454.1|995582_996224_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	33.7	1.0e-19
ARH74455.1|996311_996602_-	hypothetical protein	NA	NA	NA	NA	NA
ARH74456.1|996742_996880_+	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
ARH74457.1|996968_997325_-	DoxX family protein	NA	NA	NA	NA	NA
ARH74458.1|997815_998775_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
ARH74459.1|998823_998955_-	hypothetical protein	NA	NA	NA	NA	NA
ARH74460.1|999018_999309_-	NINE protein	NA	NA	NA	NA	NA
ARH74461.1|999398_999950_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
ARH74462.1|1000000_1000939_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
ARH76236.1|1001089_1001167_+	hypothetical protein	NA	NA	NA	NA	NA
ARH76235.1|1001270_1002482_+	isochorismate synthase	NA	NA	NA	NA	NA
ARH74463.1|1002468_1004142_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
ARH74464.1|1004128_1004932_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
ARH74465.1|1004924_1005746_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
ARH74466.1|1005983_1006313_-	staphostatin B	NA	NA	NA	NA	NA
ARH74467.1|1006350_1007532_-|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
ARH74468.1|1007613_1008642_-|protease	serine protease	protease	A0A2H4PQP7	Staphylococcus_phage	31.7	1.1e-15
>prophage 5
CP019594	Staphylococcus aureus strain GD1539 chromosome, complete genome	2793232	1027315	1035788	2793232		Synechococcus_phage(33.33%)	9	NA	NA
ARH76238.2|1027315_1027798_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
ARH74485.1|1027784_1028909_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
ARH74486.1|1028912_1029617_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	2.1e-47
ARH74487.1|1029616_1029880_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
ARH74488.1|1029881_1030553_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
ARH74489.1|1030545_1032735_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.4	1.3e-140
ARH74490.1|1032713_1034198_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	8.5e-46
ARH74491.1|1034190_1035219_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.1	2.9e-61
ARH74492.1|1035221_1035788_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	2.7e-29
>prophage 6
CP019594	Staphylococcus aureus strain GD1539 chromosome, complete genome	2793232	1293213	1299968	2793232	head	Staphylococcus_phage(83.33%)	9	NA	NA
ARH74739.1|1293213_1293411_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	50.0	9.9e-11
ARH76245.1|1294097_1294325_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	72.1	1.9e-18
ARH74740.1|1294620_1294827_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	55.2	5.5e-12
ARH74741.1|1295527_1295638_+	hypothetical protein	NA	NA	NA	NA	NA
ARH74742.1|1296030_1296216_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
ARH74743.1|1296726_1297143_+	hypothetical protein	NA	NA	NA	NA	NA
ARH74744.1|1297574_1298159_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	42.6	4.4e-30
ARH74746.1|1298807_1299059_+	hypothetical protein	NA	NA	NA	NA	NA
ARH74747.1|1299128_1299968_+|head	head morphogenesis protein	head	A0A1J0MFV1	Staphylococcus_phage	50.7	1.1e-29
>prophage 7
CP019594	Staphylococcus aureus strain GD1539 chromosome, complete genome	2793232	1475049	1557328	2793232	protease,head,tail,holin,portal,terminase,tRNA,capsid,integrase	Staphylococcus_phage(85.53%)	104	1511440:1511460	1557333:1557353
ARH74881.1|1475049_1476342_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
ARH74882.1|1476663_1479357_-	ATP-dependent helicase	NA	A0A1X9I5C8	Streptococcus_phage	34.3	1.1e-46
ARH74883.1|1479380_1480352_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
ARH74884.1|1480338_1481541_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	43.3	7.1e-35
ARH74885.1|1481545_1482688_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
ARH74886.1|1482931_1483249_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
ARH76251.1|1483583_1484264_-	zinc metallopeptidase	NA	NA	NA	NA	NA
ARH74887.1|1484335_1484923_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
ARH74888.1|1484912_1485488_-	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	27.2	1.6e-08
ARH76252.2|1485501_1486746_-	hypothetical protein	NA	NA	NA	NA	NA
ARH74889.1|1486752_1488051_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
ARH74890.1|1488060_1489125_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
ARH74891.1|1489150_1490317_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.3	2.6e-34
ARH74892.1|1490703_1490904_-	hypothetical protein	NA	NA	NA	NA	NA
ARH74893.1|1491109_1491559_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
ARH76253.1|1491650_1492595_-	heptaprenyl diphosphate synthase	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
ARH74894.1|1492611_1493337_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
ARH74895.1|1493339_1493912_-	heptaprenyl pyrophosphate synthase subunit A	NA	NA	NA	NA	NA
ARH74896.1|1493838_1494153_+	hypothetical protein	NA	NA	NA	NA	NA
ARH74897.1|1494342_1494615_-	DNA-binding protein HU	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
ARH74898.1|1494785_1495784_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
ARH74899.1|1495800_1497111_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
ARH74900.1|1497332_1498508_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
ARH74901.1|1498764_1498956_-	hypothetical protein	NA	NA	NA	NA	NA
ARH74902.1|1498909_1499047_+	hypothetical protein	NA	NA	NA	NA	NA
ARH74903.1|1499072_1499189_-	hypothetical protein	NA	NA	NA	NA	NA
ARH74904.1|1499219_1499879_-	cytidylate kinase	NA	NA	NA	NA	NA
ARH74905.1|1499955_1500924_+	asparaginase	NA	NA	NA	NA	NA
ARH74906.1|1501038_1502025_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
ARH74907.1|1502185_1502302_-	hypothetical protein	NA	NA	NA	NA	NA
ARH74908.1|1502427_1503882_-	elastin-binding protein EbpS	NA	NA	NA	NA	NA
ARH74909.1|1504034_1505414_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.3	6.4e-56
ARH74910.1|1505403_1506357_-	hypothetical protein	NA	NA	NA	NA	NA
ARH74911.1|1506464_1506713_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
ARH74912.1|1506818_1507364_-	ECF transporter S component	NA	NA	NA	NA	NA
ARH74913.1|1507767_1508700_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
ARH74914.2|1509154_1510051_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
ARH74915.1|1510105_1511035_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
ARH74916.1|1511125_1511377_-	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	2.4e-25
1511440:1511460	attL	AATCCGCCCTTTTTTTGCCCT	NA	NA	NA	NA
ARH74917.1|1511559_1512543_-	Panton-Valentine bi-component leukocidin subunit F	NA	A0A2I6PEU3	Staphylococcus_phage	100.0	4.0e-185
ARH74918.1|1512538_1513477_-	Panton-Valentine bi-component leukocidin subunit S	NA	A0A2I6PER8	Staphylococcus_phage	100.0	3.7e-180
ARH74919.1|1513866_1515321_-	CHAP domain-containing protein	NA	A0A2I6PET7	Staphylococcus_phage	100.0	5.7e-289
ARH74920.1|1515331_1515634_-|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
ARH74921.1|1515769_1516069_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
ARH74922.1|1516114_1516279_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
ARH74923.1|1516271_1516661_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
ARH74924.1|1516660_1518127_-	DUF2479 domain-containing protein	NA	A0A2I6PES7	Staphylococcus_phage	100.0	1.5e-273
ARH74925.1|1518126_1520037_-	hypothetical protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
ARH74926.1|1520052_1520343_-	hypothetical protein	NA	A0A2I6PET3	Staphylococcus_phage	100.0	2.1e-49
ARH74927.1|1520342_1521926_-	peptidase	NA	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
ARH74928.1|1521934_1522759_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
ARH74929.1|1522758_1528959_-|tail	phage tail tape measure protein	tail	A0A1X9IGU9	Staphylococcus_phage	100.0	0.0e+00
ARH74930.1|1528972_1529131_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
ARH74931.1|1529172_1529523_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
ARH74932.1|1529580_1530036_-|tail	phage tail protein	tail	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
ARH74933.1|1530127_1530769_-|tail	phage tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
ARH74934.1|1530803_1531199_-	DUF3168 domain-containing protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
ARH74935.1|1531199_1531601_-	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
ARH74936.1|1531597_1531930_-	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
ARH74937.1|1531941_1532220_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
ARH74938.1|1532288_1533452_-|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
ARH74939.1|1533463_1534237_-|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
ARH74940.1|1534220_1535459_-|portal	phage portal protein	portal	A0A2I6PER5	Staphylococcus_phage	100.0	6.9e-235
ARH74941.1|1535463_1537155_-|terminase	terminase large subunit	terminase	A0A1X9IGU0	Staphylococcus_phage	100.0	0.0e+00
ARH74942.1|1537144_1537450_-|terminase	phage terminase small subunit P27 family	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
ARH74943.1|1537576_1537891_-	HNH endonuclease	NA	A0A2I6PEN4	Staphylococcus_phage	100.0	5.0e-57
ARH74944.1|1538047_1538485_-	transcriptional regulator	NA	A0A2I6PEN3	Staphylococcus_phage	100.0	7.9e-77
ARH74945.1|1538497_1539865_-	ATP-dependent helicase	NA	A0A2I6PE95	Staphylococcus_phage	100.0	1.7e-263
ARH76254.1|1539845_1540136_-	VRR-NUC domain-containing protein	NA	A0A2I6PEN7	Staphylococcus_phage	100.0	6.5e-51
ARH74946.1|1540269_1540368_+	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	3.7e-11
ARH74947.1|1540476_1542924_-	hypothetical protein	NA	A0A2I6PEP4	Staphylococcus_phage	100.0	0.0e+00
ARH74948.1|1542978_1543185_+	hypothetical protein	NA	A0A1X9IGZ9	Staphylococcus_phage	100.0	7.6e-30
ARH74949.1|1543211_1543412_-	DUF1514 domain-containing protein	NA	A0A2I6PEP5	Staphylococcus_phage	100.0	4.9e-26
ARH74950.1|1543479_1543632_-	transcriptional regulator	NA	A0A2I6PEM5	Staphylococcus_phage	100.0	2.0e-19
ARH74951.1|1543628_1544015_-	hypothetical protein	NA	A0A1X9IGZ2	Staphylococcus_phage	100.0	3.0e-64
ARH74952.1|1544007_1544244_-	hypothetical protein	NA	A0A2I6PEM4	Staphylococcus_phage	100.0	2.8e-36
ARH74953.1|1544236_1544440_-	hypothetical protein	NA	A0A2I6PEQ8	Staphylococcus_phage	100.0	3.4e-30
ARH74954.1|1544436_1544643_-	DUF1381 domain-containing protein	NA	A0A2I6PEM9	Staphylococcus_phage	100.0	1.6e-19
ARH74955.1|1544679_1545216_-	dUTPase	NA	A0A2I6PEN6	Staphylococcus_phage	100.0	1.6e-95
ARH74956.1|1545208_1545457_-	DUF1024 family protein	NA	A0A2I6PEP2	Staphylococcus_phage	100.0	1.4e-38
ARH74957.1|1545471_1545714_-	hypothetical protein	NA	A0A2I6PEV3	Staphylococcus_phage	100.0	1.5e-40
ARH74958.1|1545728_1545929_-	hypothetical protein	NA	A0A2I6PEM3	Staphylococcus_phage	100.0	2.5e-30
ARH74959.1|1545931_1546189_-	DUF3310 domain-containing protein	NA	A0A2I6PEN5	Staphylococcus_phage	100.0	2.6e-43
ARH74960.1|1546188_1546590_-	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
ARH74961.1|1546589_1546775_-	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
ARH76255.1|1546787_1548740_-	DNA polymerase	NA	A0A2I6PEL4	Staphylococcus_phage	100.0	0.0e+00
ARH74962.1|1548807_1549365_-	DUF2815 family protein	NA	A0A2I6PEP8	Staphylococcus_phage	100.0	1.8e-97
ARH74963.1|1549390_1550557_-	DUF2800 domain-containing protein	NA	A0A2I6PEL9	Staphylococcus_phage	100.0	1.4e-221
ARH74964.1|1550553_1550916_-	hypothetical protein	NA	A0A2I6PEM7	Staphylococcus_phage	100.0	3.7e-56
AXB22686.1|1550929_1551214_-	DUF1108 family protein	NA	A0A2I6PEM2	Staphylococcus_phage	100.0	1.5e-47
ARH74992.1|1551194_1551497_-	DUF2482 family protein	NA	A0A1X9IGX2	Staphylococcus_phage	99.0	2.0e-47
ARH74993.1|1551489_1551807_-	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	100.0	1.1e-35
ARH74994.1|1551899_1552061_-	DUF1270 family protein	NA	A0A2I6PEK6	Staphylococcus_phage	100.0	1.1e-20
ARH74995.1|1552072_1552336_-	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
ARH74996.1|1552360_1552576_-	hypothetical protein	NA	A0A2I6PEK7	Staphylococcus_phage	100.0	1.0e-32
ARH74997.2|1552622_1552862_+	hypothetical protein	NA	A0A2I6PEP1	Staphylococcus_phage	100.0	8.8e-38
ARH74998.1|1553118_1553310_-	XRE family transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
ARH74999.1|1553470_1553800_+	XRE family transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
ARH75000.1|1553812_1554274_+	toxin	NA	A0A2I6PEK4	Staphylococcus_phage	99.3	1.3e-85
ARH75001.1|1554291_1554726_+	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	100.0	1.2e-24
ARH75002.1|1554754_1555150_+	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
ARH75003.1|1555239_1555386_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	1.2e-16
ARH75004.1|1555382_1555997_-	ATPase	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
ARH75005.1|1556122_1557328_+|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
1557333:1557353	attR	AATCCGCCCTTTTTTTGCCCT	NA	NA	NA	NA
>prophage 8
CP019594	Staphylococcus aureus strain GD1539 chromosome, complete genome	2793232	1618079	1626391	2793232	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
ARH75073.1|1618079_1618865_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
ARH75074.1|1618990_1619881_-	endonuclease	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
ARH75075.1|1619890_1621237_-	ATP-dependent helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
ARH75076.1|1621350_1622451_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	1.0e-08
ARH75077.1|1622453_1623131_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
ARH75078.1|1623261_1624368_-	RNA polymerase sigma factor SigA	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
ARH75079.1|1624591_1626391_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 9
CP019594	Staphylococcus aureus strain GD1539 chromosome, complete genome	2793232	1695815	1704858	2793232	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
ARH75149.1|1695815_1696334_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
ARH75150.1|1696355_1698629_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	2.1e-64
ARH75151.1|1698831_1701111_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
ARH75152.1|1701385_1701646_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
ARH75153.1|1701664_1702804_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
ARH75154.1|1702826_1703852_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
ARH75155.1|1703853_1704858_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 10
CP019594	Staphylococcus aureus strain GD1539 chromosome, complete genome	2793232	1839793	1876438	2793232	protease,transposase	Staphylococcus_phage(90.91%)	44	NA	NA
ARH75266.1|1839793_1840747_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	6.4e-79
ARH75267.1|1840743_1841307_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	95.7	7.3e-99
ARH75268.1|1841425_1841827_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
ARH75269.1|1842399_1843227_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
ARH75270.1|1843229_1843349_-	hypothetical protein	NA	NA	NA	NA	NA
ARH75271.1|1843360_1843552_-	hypothetical protein	NA	NA	NA	NA	NA
ARH75272.1|1843460_1844462_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
ARH75273.1|1844589_1845048_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	97.4	4.1e-68
ARH75274.1|1845060_1846242_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	1.9e-226
ARH75275.1|1846252_1846885_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
ARH76268.1|1846891_1847923_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.1	3.1e-196
ARH75276.1|1848415_1849918_-	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	5.0e-30
ARH75277.1|1850560_1850875_+	ArsR family transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	1.3e-52
ARH75278.1|1850874_1852167_+	arsenical efflux pump membrane protein ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	94.7	7.5e-216
ARH75279.1|1852253_1853108_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
ARH75280.1|1853383_1853608_-	hypothetical protein	NA	NA	NA	NA	NA
ARH75281.1|1853806_1854277_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	84.6	5.0e-69
ARH75282.1|1854389_1854833_+	competence protein ComK	NA	NA	NA	NA	NA
ARH75283.1|1854819_1855263_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.9	2.4e-49
ARH75284.1|1855560_1856196_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
ARH75285.1|1856362_1856983_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
ARH75286.1|1857545_1858259_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
ARH75287.1|1858517_1858820_+	hypothetical protein	NA	NA	NA	NA	NA
ARH75288.1|1859074_1859440_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	98.3	6.9e-58
ARH75289.1|1859436_1859790_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	82.1	2.3e-18
ARH75290.1|1860039_1860873_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.9	1.7e-157
ARH75291.1|1861084_1861993_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.3	1.3e-137
ARH75292.1|1862117_1863311_-	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
ARH75293.1|1863682_1865275_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.6	0.0e+00
ARH76269.1|1865571_1866318_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.0	7.8e-141
ARH75294.1|1866322_1866796_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
ARH75295.1|1866861_1867119_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
ARH75296.1|1867115_1868117_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	86.5	3.3e-163
ARH75297.1|1868121_1869600_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	95.5	6.7e-277
ARH76270.1|1869758_1870214_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	96.6	8.3e-77
ARH75298.1|1870516_1871179_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	87.7	2.8e-49
ARH75299.1|1871259_1872255_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	94.8	1.3e-69
ARH75300.1|1872330_1872957_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	9.9e-81
ARH75301.1|1872997_1873342_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	96.5	5.1e-55
ARH75302.1|1873439_1874012_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	3.5e-24
ARH75303.1|1874209_1874767_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	98.1	1.1e-78
ARH75304.1|1875137_1875314_-	hypothetical protein	NA	NA	NA	NA	NA
ARH75305.1|1875324_1875708_-	hypothetical protein	NA	NA	NA	NA	NA
ARH75306.1|1876156_1876438_-|transposase	IS3 family transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	63.4	3.2e-23
>prophage 11
CP019594	Staphylococcus aureus strain GD1539 chromosome, complete genome	2793232	1979997	2064587	2793232	transposase,protease,head,tail,holin,terminase,portal,capsid,integrase	Staphylococcus_phage(84.62%)	108	2028261:2028278	2054450:2054467
ARH75398.1|1979997_1981164_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
ARH75399.1|1981194_1981518_+	staphostatin A	NA	NA	NA	NA	NA
ARH75400.1|1981810_1981984_-	NETI motif-containing protein	NA	NA	NA	NA	NA
ARH75401.1|1981964_1982567_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
ARH75402.1|1982836_1983658_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	53.1	6.1e-70
ARH75403.1|1983650_1985120_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	7.0e-109
ARH75404.1|1985303_1986380_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
ARH75405.1|1986399_1987194_+	prephenate dehydratase	NA	NA	NA	NA	NA
ARH75406.1|1987265_1987373_+	hypothetical protein	NA	NA	NA	NA	NA
ARH75407.1|1987383_1988946_-	sodium-dependent dicarboxylate transporter SdcS	NA	NA	NA	NA	NA
ARH75408.1|1989150_1990248_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	3.3e-47
ARH75409.1|1990619_1991180_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
ARH75410.1|1991232_1992162_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
ARH75411.1|1992354_1992528_-	hypothetical protein	NA	NA	NA	NA	NA
ARH75412.1|1992579_1993959_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
ARH75413.1|1994078_1995107_-	hypothetical protein	NA	NA	NA	NA	NA
ARH75414.1|1995377_1995779_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
ARH75415.1|1995835_1996009_-	hypothetical protein	NA	NA	NA	NA	NA
ARH75416.1|1996459_1997500_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
ARH75417.1|1997556_1998399_-	hypothetical protein	NA	NA	NA	NA	NA
ARH75418.1|1998395_1998953_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
ARH75419.1|1999012_1999537_-	hypothetical protein	NA	NA	NA	NA	NA
ARH75420.1|1999657_2000221_+	thioredoxin family protein	NA	NA	NA	NA	NA
ARH75421.1|2000284_2001025_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
ARH75422.1|2001024_2001897_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
ARH75423.1|2001893_2002574_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
ARH75424.1|2002574_2003471_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.7	6.5e-17
ARH75425.1|2003467_2003848_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
ARH75426.1|2004105_2004282_-	hypothetical protein	NA	NA	NA	NA	NA
ARH75427.1|2004523_2004622_-	hypothetical protein	NA	NA	NA	NA	NA
ARH75428.1|2004821_2006108_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
ARH75429.1|2006378_2008448_-	MAP domain-containing protein	NA	NA	NA	NA	NA
ARH75430.1|2008833_2009034_+	hypothetical protein	NA	A0A1P8L6A7	Staphylococcus_phage	95.4	3.8e-26
ARH75431.1|2009405_2009585_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
ARH75432.1|2009608_2009917_+	hypothetical protein	NA	M9NTD8	Staphylococcus_phage	100.0	2.1e-39
ARH75433.1|2009895_2010156_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
ARH75434.1|2010208_2010559_-	inhibitor	NA	A0A1P8L6B0	Staphylococcus_phage	99.1	2.9e-53
ARH75435.1|2011243_2011693_+	chemotaxis inhibitory protein	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
AXB22690.1|2011787_2012246_-	amidase	NA	R9QTN8	Staphylococcus_phage	98.7	4.9e-85
ARH75439.1|2012772_2013264_-	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
ARH75440.1|2013454_2014210_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
ARH75441.1|2014221_2014476_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
ARH75442.1|2014527_2014635_+	hypothetical protein	NA	NA	NA	NA	NA
ARH75443.1|2014687_2014864_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
ARH75444.1|2015013_2015310_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
ARH75445.1|2015367_2015655_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	98.9	8.4e-43
ARH75446.1|2015701_2015854_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
ARH75447.1|2015843_2019629_-	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.5	0.0e+00
ARH75448.1|2019644_2021129_-|tail	phage tail protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
ARH75449.1|2021125_2025655_-|tail	phage tail tape measure protein	tail	A0EX03	Staphylococcus_phage	99.1	0.0e+00
ARH75450.1|2025899_2026250_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
ARH75451.1|2026299_2026524_-	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
ARH75452.1|2026565_2027210_-|tail	phage tail protein	tail	G4KNQ7	Staphylococcus_phage	100.0	6.5e-120
ARH75453.1|2027210_2027618_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
ARH75454.1|2027614_2028019_-	hypothetical protein	NA	G4KNQ5	Staphylococcus_phage	100.0	4.3e-69
ARH75455.1|2028015_2028378_-|head,tail	phage head-tail adapter protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
2028261:2028278	attL	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
ARH75456.1|2028361_2028646_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
ARH75457.1|2028635_2028920_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
ARH75458.1|2028939_2030085_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
ARH75459.1|2030108_2030846_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
ARH75460.1|2030829_2032017_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
ARH75461.1|2032032_2033694_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
ARH75462.1|2033690_2034035_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
ARH75463.1|2034164_2034464_-	HNH endonuclease	NA	G4KNP8	Staphylococcus_phage	100.0	4.6e-52
ARH75464.1|2034695_2035112_-	transcriptional regulator	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
ARH75465.1|2035139_2035340_-	DUF1514 domain-containing protein	NA	R9QT57	Staphylococcus_phage	100.0	1.1e-28
ARH75466.1|2035339_2035990_-	hypothetical protein	NA	D2JLD8	Staphylococcus_phage	100.0	8.9e-117
ARH75467.1|2036148_2036298_-	transcriptional regulator	NA	Q4ZBC6	Staphylococcus_virus	82.5	2.0e-16
ARH75468.1|2036310_2036769_-	hypothetical protein	NA	Q4ZBC7	Staphylococcus_virus	96.1	1.6e-75
AXB22691.1|2036761_2036914_-	DUF1381 domain-containing protein	NA	Q4ZBC8	Staphylococcus_virus	96.0	1.3e-18
ARH75469.1|2036950_2037460_-	dUTP pyrophosphatase	NA	A9CR88	Staphylococcus_phage	98.8	3.6e-89
ARH75470.1|2037452_2037635_-	hypothetical protein	NA	A0EWY1	Staphylococcus_phage	98.3	1.0e-25
ARH75471.1|2037624_2037876_-	DUF1024 family protein	NA	A0A1W6JPK6	Staphylococcus_phage	98.8	2.1e-37
ARH76275.2|2037868_2038237_-	acetyltransferase	NA	A0ZS31	Staphylococcus_virus	96.7	1.1e-60
ARH75472.1|2038245_2038488_-	hypothetical protein	NA	A0A2I6PDM0	Staphylococcus_phage	95.0	2.1e-39
ARH75473.1|2038491_2038860_-	hypothetical protein	NA	I1W656	Staphylococcus_phage	100.0	6.3e-51
ARH75474.1|2038872_2039277_-	RusA family crossover junction endodeoxyribonuclease	NA	I1W657	Staphylococcus_phage	100.0	1.4e-72
ARH75475.1|2039285_2039504_-	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
ARH75476.1|2039510_2040362_-	DnaD domain protein	NA	A0EWX4	Staphylococcus_phage	95.2	3.6e-134
ARH75477.1|2040391_2040862_-	single-stranded DNA-binding protein	NA	S4V682	Staphylococcus_phage	96.8	5.3e-79
ARH75478.1|2040862_2041480_-	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	100.0	9.1e-87
ARH75479.1|2041560_2042481_-	recombinase	NA	A0A1V0E5D7	Staphylococcus_phage	99.7	8.6e-166
ARH75480.1|2042482_2044426_-	ATPase	NA	A0EWX0	Staphylococcus_phage	98.9	0.0e+00
ARH75481.1|2044434_2044698_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
ARH75482.1|2044706_2044967_-	DUF1108 family protein	NA	A0A2I6PDH1	Staphylococcus_phage	100.0	2.6e-43
ARH75483.1|2045059_2045221_-	DUF1270 family protein	NA	A0A2I6PDF7	Staphylococcus_phage	98.1	1.6e-19
ARH75484.1|2045217_2045538_-	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
ARH75485.1|2045596_2046229_+	hypothetical protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
ARH75486.1|2046243_2046384_-	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
ARH75487.1|2046414_2046612_-	hypothetical protein	NA	A0A1W6JPV3	Staphylococcus_phage	100.0	1.2e-24
ARH75488.1|2046627_2047383_-	oxidoreductase	NA	A0A1P8L6G2	Staphylococcus_phage	100.0	3.3e-139
ARH75489.1|2047439_2047979_+	hypothetical protein	NA	A7TW92	Staphylococcus_phage	100.0	1.7e-97
ARH75490.1|2048002_2048263_-	transcriptional regulator	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
ARH75491.1|2048276_2048519_-	DUF739 family protein	NA	Q9G038	Staphylococcus_virus	100.0	2.8e-39
ARH75492.1|2048682_2049399_+	helix-turn-helix domain-containing protein	NA	R9QTP6	Staphylococcus_phage	100.0	9.2e-131
ARH75494.1|2049747_2050695_+|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	99.7	1.9e-184
ARH75496.1|2051387_2051570_+	hypothetical protein	NA	M9NSW6	Staphylococcus_phage	100.0	4.1e-27
ARH75497.1|2051669_2052134_+	hypothetical protein	NA	A0EWV3	Staphylococcus_phage	100.0	1.1e-28
ARH75498.1|2052192_2053230_+|integrase	site-specific integrase	integrase	A0EWV2	Staphylococcus_phage	99.7	1.0e-178
ARH75500.1|2054372_2055389_-	beta-channel forming cytolysin	NA	A0A2I6PER8	Staphylococcus_phage	29.3	1.1e-25
2054450:2054467	attR	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
ARH75501.1|2055410_2056466_-	succinyl-diaminopimelate desuccinylase	NA	A0A2I6PER8	Staphylococcus_phage	35.4	8.7e-37
ARH75502.1|2056897_2058121_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
ARH75503.1|2058503_2059811_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
AXB22708.1|2060349_2060691_-	hypothetical protein	NA	C8CH40	Staphylococcus_phage	47.8	3.3e-22
ARH75505.1|2060972_2061152_-	hypothetical protein	NA	NA	NA	NA	NA
ARH75506.1|2061692_2063309_-	molecular chaperone GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
ARH75507.1|2063384_2063669_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
ARH75508.1|2063843_2064587_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
