The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP019595	Staphylococcus aureus strain GD1677 chromosome, complete genome	2790204	254088	365308	2790204	protease,transposase,holin	Streptococcus_phage(30.3%)	102	NA	NA
ARH78899.1|254088_255231_+|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
ARH78900.1|255546_256959_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
ARH76511.1|257219_257576_-	DUF488 domain-containing protein	NA	NA	NA	NA	NA
AWY02600.1|257594_257699_+	nitrogen fixation protein NifR	NA	NA	NA	NA	NA
ARH76512.1|257732_257906_-	hypothetical protein	NA	NA	NA	NA	NA
ARH76513.1|257930_259076_-	nitric oxide dioxygenase	NA	NA	NA	NA	NA
ARH76514.1|259648_260602_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
ARH76515.1|260813_260957_+	hypothetical protein	NA	NA	NA	NA	NA
ARH76516.1|260922_262452_-	PTS glucose transporter subunit IIB	NA	A0A2I7SAJ6	Vibrio_phage	53.3	1.8e-11
ARH76517.1|262813_263749_+	nucleoside hydrolase	NA	NA	NA	NA	NA
ARH76518.1|264086_266183_+	transcription antiterminator	NA	NA	NA	NA	NA
ARH76519.1|266167_266635_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
ARH76520.1|266657_266936_+	PTS galactitol transporter subunit IIB	NA	NA	NA	NA	NA
ARH76521.1|267162_268422_+	PTS galactitol transporter subunit IIC	NA	NA	NA	NA	NA
ARH76522.1|268439_269495_+	sorbitol dehydrogenase	NA	NA	NA	NA	NA
ARH76523.1|269496_269643_+	hypothetical protein	NA	NA	NA	NA	NA
ARH76524.1|269666_270710_+	galactitol-1-phosphate 5-dehydrogenase	NA	E3SJ82	Synechococcus_phage	24.6	1.0e-13
ARH76525.1|271237_271954_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
ARH76526.1|271946_272972_+	ribitol-5-phosphate dehydrogenase	NA	NA	NA	NA	NA
ARH78901.1|273146_274688_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
ARH78902.2|274818_275007_-	nitrogen fixation protein NifR	NA	NA	NA	NA	NA
ARH76527.1|275473_276643_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
ARH76528.1|276918_277635_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
ARH76529.1|277627_278653_+	ribitol-5-phosphate dehydrogenase	NA	NA	NA	NA	NA
ARH76530.1|278674_280363_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
ARH76531.1|280395_282117_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	37.4	2.1e-11
ARH76532.1|282260_282935_+	iron-sulfur cluster repair di-iron protein ScdA	NA	NA	NA	NA	NA
ARH76533.1|283196_284936_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	31.5	1.5e-62
ARH76534.1|284938_285679_+	DNA-binding response regulator	NA	NA	NA	NA	NA
ARH76535.1|285791_286235_+|holin	antiholin-like murein hydrolase modulator LrgA	holin	NA	NA	NA	NA
ARH76536.1|286227_286929_+|holin	antiholin-like protein LrgB	holin	NA	NA	NA	NA
ARH76537.1|287269_289561_+	nitric-oxide reductase large subunit	NA	NA	NA	NA	NA
ARH76538.1|289786_290491_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
ARH76539.1|290639_291431_+	PTS glucose transporter subunit IIABC	NA	NA	NA	NA	NA
ARH76540.1|291446_292883_+	6-phospho-beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	25.8	2.2e-30
ARH76542.1|293458_294220_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
ARH76543.1|294471_295386_-	ribokinase	NA	NA	NA	NA	NA
ARH76544.1|295413_295818_-	D-ribose pyranase	NA	NA	NA	NA	NA
ARH76545.1|295832_296714_-	ribose transporter RbsU	NA	NA	NA	NA	NA
ARH76546.1|296945_297944_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
ARH76548.1|298324_298717_+	hypothetical protein	NA	NA	NA	NA	NA
ARH76550.1|299100_299775_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.6	6.8e-128
ARH76551.1|299790_300210_+	RepB family plasmid replication initiator protein	NA	NA	NA	NA	NA
AWY02601.1|300355_300451_-	hypothetical protein	NA	NA	NA	NA	NA
ARH76552.1|300847_301555_-	FAD-dependent thymidylate synthase	NA	M1IEJ2	Bacillus_phage	60.6	8.0e-79
ARH78903.1|301551_302043_-	dihydrofolate reductase	NA	A0A076GDN3	Bacillus_phage	40.9	2.9e-27
ARH76553.1|302126_302702_-	recombinase family protein	NA	A0A1V0E035	Clostridioides_phage	30.1	1.9e-14
ARH76554.1|303028_303640_+	recombinase family protein	NA	A0A219YA40	Aeromonas_phage	36.6	1.8e-18
ARH76555.1|303667_303973_-	hypothetical protein	NA	NA	NA	NA	NA
ARH76556.1|303994_304267_-	hypothetical protein	NA	NA	NA	NA	NA
ARH76557.2|304344_305031_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
ARH76559.1|305343_306819_+	bifunctional aminoglycoside N-acetyltransferase AAC(6')-Ie/aminoglycoside O-phosphotransferase APH(2'')-Ia	NA	A0A1X9I6C2	Streptococcus_phage	99.8	3.3e-284
ARH76560.1|307191_307275_+	23S rRNA methyltransferase attenuator leader peptide ErmL	NA	NA	NA	NA	NA
ARH76561.1|307399_308137_+	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.6	1.4e-134
AWY02602.1|308141_308273_+	hypothetical protein	NA	E4ZFP9	Streptococcus_phage	95.3	1.1e-15
ARH76562.1|308441_309350_+	aminoglycoside nucleotidyltransferase ANT(6)-Ia	NA	E4ZFP8	Streptococcus_phage	100.0	2.8e-177
ARH76563.1|309346_309637_+	streptothricin acetyltransferase	NA	A0A1B0RXL7	Streptococcus_phage	100.0	5.3e-37
ARH76564.1|309689_310328_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
ARH76565.1|310431_312060_+|transposase	IS1182 family transposase	transposase	A0A146ICT8	Staphylococcus_phage	30.7	2.9e-55
ARH76566.1|312304_312574_+	peptide-binding protein	NA	A0A1X9I6D5	Streptococcus_phage	81.5	7.6e-22
ARH76567.1|312594_312678_+	23S rRNA methyltransferase attenuator leader peptide ErmL	NA	NA	NA	NA	NA
ARH76568.1|312802_313540_+	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.6	1.4e-134
AWY02603.1|313544_313676_+	hypothetical protein	NA	E4ZFP9	Streptococcus_phage	95.3	1.1e-15
ARH76569.1|313894_314449_+	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	52.1	2.3e-36
ARH76570.1|314452_317371_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	36.1	1.1e-169
ARH76571.1|317677_320641_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	40.0	3.0e-212
ARH76572.1|320918_322415_-	glycosyltransferase	NA	NA	NA	NA	NA
ARH76573.1|322680_323331_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.5	7.5e-124
ARH76574.2|323698_325075_-	MFS transporter	NA	NA	NA	NA	NA
ARH76575.1|325443_326052_-	recombinase family protein	NA	M9Q1K0	Clostridium_phage	33.5	6.8e-18
ARH76576.1|326180_326759_-	HTH domain-containing protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.1	4.2e-41
ARH76577.1|326929_328264_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
ARH76578.1|328291_329359_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
ARH76579.1|329496_329757_+	metal-sensitive transcriptional regulator	NA	NA	NA	NA	NA
ARH76580.1|329756_330512_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
ARH76581.1|330790_332530_+|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	77.9	1.8e-241
ARH76582.1|332735_333905_+	DUF262 domain-containing protein	NA	NA	NA	NA	NA
AWY02604.1|334097_334190_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
ARH76583.1|334356_334704_-	transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	40.0	1.6e-16
ARH76584.2|334721_335351_-	cadmium transporter	NA	NA	NA	NA	NA
ARH76585.1|335450_335981_-	N-acetyltransferase	NA	A0A1P8CWJ6	Bacillus_phage	58.8	4.8e-52
ARH76586.1|336945_337071_-	Rep protein	NA	NA	NA	NA	NA
ARH76587.1|338483_339350_-	replication protein	NA	NA	NA	NA	NA
ARH76588.1|339789_340557_+	DUF536 domain-containing protein	NA	NA	NA	NA	NA
ARH76589.1|341057_342530_-	MFS transporter	NA	NA	NA	NA	NA
ARH76590.1|342824_343499_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.6	6.8e-128
ARH76591.1|344977_345970_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
ARH76592.1|346295_347246_+	glycine-glycine endopeptidase LytM	NA	V5R8R0	Arthrobacter_phage	42.7	1.5e-16
ARH76593.1|347297_347957_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.5	2.0e-23
ARH76594.1|347970_348891_-	ABC transporter permease	NA	NA	NA	NA	NA
ARH76595.1|348887_350054_-	ABC transporter permease	NA	NA	NA	NA	NA
ARH76596.1|350121_351645_-	hypothetical protein	NA	NA	NA	NA	NA
ARH76597.1|351975_352869_-	CHAP domain-containing protein	NA	NA	NA	NA	NA
ARH76598.1|353116_353410_+	WXG100 family type VII secretion effector EsxA	NA	NA	NA	NA	NA
ARH76599.1|353492_356522_+	type VII secretion protein EsaA	NA	NA	NA	NA	NA
ARH76600.1|356521_356980_+	type VII secretion protein EssA	NA	NA	NA	NA	NA
ARH76601.1|356912_357194_+	type VII secretion protein EsaB	NA	NA	NA	NA	NA
ARH76602.1|357206_358541_+	protein EssB	NA	NA	NA	NA	NA
ARH76603.1|358562_363008_+	type VII secretion protein EssC	NA	V5UPA0	Mycobacterium_phage	23.6	2.2e-28
ARH76604.1|363019_363316_+	TIGR04197 family type VII secretion effector	NA	NA	NA	NA	NA
ARH76605.1|363333_363729_+	DUF5082 domain-containing protein	NA	NA	NA	NA	NA
ARH76606.1|363754_365308_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
CP019595	Staphylococcus aureus strain GD1677 chromosome, complete genome	2790204	392683	436992	2790204	tail,portal,protease,integrase,head,capsid,holin,terminase	Staphylococcus_phage(92.06%)	64	392573:392590	437526:437543
392573:392590	attL	ATCTTACAAGGGTGGGAT	NA	NA	NA	NA
ARH76636.1|392683_393889_-|integrase	site-specific integrase	integrase	A0A1X9H094	Staphylococcus_phage	99.8	1.1e-221
ARH76637.1|393998_394622_+	hypothetical protein	NA	B7T0F3	Staphylococcus_virus	99.5	9.8e-105
ARH76638.1|394819_395215_-	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
ARH76639.1|395243_395678_-	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	100.0	1.2e-24
ARH76640.1|395695_396157_-	toxin	NA	A0A2I6PEK4	Staphylococcus_phage	98.0	1.4e-84
ARH76641.1|396169_396499_-	XRE family transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
ARH76642.1|396659_396851_+	XRE family transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
ARH76643.1|396939_397185_+	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
ARH76644.1|397153_397519_-	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
ARH76645.1|397573_397789_+	hypothetical protein	NA	A0A2I6PDN5	Staphylococcus_phage	100.0	1.3e-32
ARH76646.1|397813_398077_+	helix-turn-helix domain-containing protein	NA	A0A2I6PDM6	Staphylococcus_phage	100.0	1.1e-44
ARH76647.1|398089_398251_+	DUF1270 family protein	NA	A0A2I6PEZ9	Staphylococcus_phage	100.0	5.0e-21
ARH76648.1|398329_398653_+	TrmB family transcriptional regulator	NA	A0A2I6PDL5	Staphylococcus_phage	100.0	1.3e-52
ARH76649.1|398667_399030_+	hypothetical protein	NA	A0A2K9VBV1	Staphylococcus_phage	100.0	6.4e-56
ARH76650.1|399026_400193_+	DUF2800 domain-containing protein	NA	A0A2I6PDL4	Staphylococcus_phage	100.0	8.3e-222
ARH76651.1|400218_400776_+	DUF2815 family protein	NA	A0A2I6PF05	Staphylococcus_phage	100.0	1.8e-97
ARH78904.1|400844_402797_+	DNA polymerase	NA	A0A2I6PF18	Staphylococcus_phage	100.0	0.0e+00
ARH76652.1|402809_402995_+	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	98.4	2.1e-26
ARH76653.1|402994_403396_+	PVL family protein	NA	A0A2I6PF14	Staphylococcus_phage	100.0	1.2e-68
ARH76654.1|403395_403653_+	DUF3310 domain-containing protein	NA	A0A2I6PF10	Staphylococcus_phage	100.0	5.7e-43
ARH76655.1|403655_403856_+	hypothetical protein	NA	A0A2I6PF32	Staphylococcus_phage	98.5	3.7e-29
ARH76656.1|403864_404113_+	hypothetical protein	NA	A0A2I6PF06	Staphylococcus_phage	100.0	3.6e-42
ARH76657.1|404127_404334_+	hypothetical protein	NA	A0A0N9BAW9	Staphylococcus_phage	97.1	8.7e-34
ARH76658.1|404336_404744_+	hypothetical protein	NA	M9NST1	Staphylococcus_phage	98.5	2.6e-74
ARH76659.1|404740_404935_+	hypothetical protein	NA	A0A0U2A067	Staphylococcus_phage	98.4	6.3e-26
ARH76660.1|404931_405369_+	hypothetical protein	NA	NA	NA	NA	NA
ARH76661.1|405365_405650_+	hypothetical protein	NA	Q9G014	Staphylococcus_virus	95.7	3.7e-43
ARH76662.1|405642_405894_+	DUF1024 family protein	NA	M9NRI5	Staphylococcus_phage	97.6	7.1e-38
ARH76663.1|406233_406740_+	dUTPase	NA	G4KNP5	Staphylococcus_phage	100.0	1.0e-91
ARH76664.1|406776_406983_+	DUF1381 domain-containing protein	NA	S4V684	Staphylococcus_phage	98.5	4.9e-29
ARH76665.1|406979_407174_+	hypothetical protein	NA	A0A2I6PDC3	Staphylococcus_phage	100.0	1.3e-28
ARH76666.1|407170_407374_+	hypothetical protein	NA	A0A0N9BAX5	Staphylococcus_phage	100.0	5.2e-31
ARH76667.1|407366_407519_+	transcriptional regulator	NA	Q4ZCN4	Staphylococcus_virus	98.0	3.4e-19
ARH76668.1|407586_407787_+	DUF1514 domain-containing protein	NA	A0A2I6PF41	Staphylococcus_phage	98.5	1.1e-25
ARH76669.1|407838_410286_+	hypothetical protein	NA	A0A2I6PDP5	Staphylococcus_phage	98.8	0.0e+00
ARH76670.1|410387_410492_-	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	94.1	1.8e-11
ARH78905.1|410625_410916_+	VRR-NUC domain-containing protein	NA	U5U7A3	Staphylococcus_phage	100.0	4.9e-51
ARH76671.1|410896_412264_+	ATP-dependent helicase	NA	A0A2I6PE95	Staphylococcus_phage	99.8	6.6e-263
ARH76672.1|412276_412714_+	transcriptional regulator	NA	A0A2I6PEB8	Staphylococcus_phage	100.0	1.0e-76
ARH76673.1|412870_413185_+	HNH endonuclease	NA	Q4ZCU3	Staphylococcus_virus	100.0	2.5e-56
ARH76674.1|413312_413618_+|terminase	phage terminase small subunit P27 family	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
ARH76675.1|413607_415299_+|terminase	terminase large subunit	terminase	A0A2I6PE99	Staphylococcus_phage	99.6	0.0e+00
ARH76676.1|415303_416542_+|portal	phage portal protein	portal	A0A2K9VBP0	Staphylococcus_phage	100.0	6.9e-235
ARH76677.1|416525_417299_+|protease	Clp protease ClpP	protease	A0A2I6PE26	Staphylococcus_phage	97.3	4.3e-134
ARH76678.1|417310_418474_+|capsid	phage major capsid protein	capsid	A0A0K1LKB5	Staphylococcus_phage	99.5	6.8e-216
ARH76679.1|418542_418821_+|head,tail	phage gp6-like head-tail connector protein	head,tail	R4WAL3	Staphylococcus_phage	98.9	3.9e-45
ARH76680.1|418832_419165_+	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
ARH76681.1|419161_419563_+	hypothetical protein	NA	A0A0K1LL98	Staphylococcus_phage	99.2	4.0e-67
ARH76682.1|419563_419959_+	DUF3168 domain-containing protein	NA	A0A0K1LKC0	Staphylococcus_phage	96.2	1.7e-65
ARH76683.1|419993_420635_+|tail	phage tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	97.7	8.0e-118
ARH76684.1|420726_421182_+|tail	phage tail protein	tail	A0A2I6PF45	Staphylococcus_phage	99.3	1.1e-76
ARH76685.1|421239_421590_+	hypothetical protein	NA	A0A2I6PDE6	Staphylococcus_phage	100.0	1.1e-55
ARH76686.1|421631_421790_+	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
ARH76687.1|421803_428004_+|tail	phage tail tape measure protein	tail	A0A2K9VBQ5	Staphylococcus_phage	98.7	0.0e+00
ARH76688.1|428003_428828_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	98.9	7.8e-158
ARH76689.1|428836_430420_+	peptidase	NA	Q8SDP1	Staphylococcus_virus	99.8	1.0e-307
ARH76690.1|430419_430710_+	hypothetical protein	NA	A0A2I6PF46	Staphylococcus_phage	100.0	2.1e-49
ARH76691.1|430725_432636_+	hypothetical protein	NA	A0A2I6PF35	Staphylococcus_phage	100.0	0.0e+00
ARH76692.1|432635_434102_+	DUF2479 domain-containing protein	NA	A0A2I6PEI6	Staphylococcus_phage	93.2	4.2e-255
ARH76693.1|434101_434491_+	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
ARH76694.1|434483_434648_+	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
ARH76695.1|434693_434993_+	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
ARH76696.1|435128_435566_+|holin	phage holin	holin	B2ZZ05	Staphylococcus_phage	99.3	1.2e-72
ARH76697.1|435546_436992_+	CHAP domain-containing protein	NA	A0A0H4ITZ3	Staphylococcus_phage	96.3	5.5e-284
437526:437543	attR	ATCTTACAAGGGTGGGAT	NA	NA	NA	NA
>prophage 3
CP019595	Staphylococcus aureus strain GD1677 chromosome, complete genome	2790204	828273	836093	2790204		Hokovirus(16.67%)	10	NA	NA
ARH77056.1|828273_829329_-	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
ARH77057.1|829328_830015_-	DNA-binding response regulator	NA	NA	NA	NA	NA
ARH77058.1|829989_830463_-	DoxX family membrane protein	NA	NA	NA	NA	NA
ARH77059.1|830803_831244_-	hypothetical protein	NA	NA	NA	NA	NA
ARH77060.1|831524_832109_-	hypothetical protein	NA	NA	NA	NA	NA
ARH77061.1|832207_832921_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
ARH77062.1|832924_833344_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
ARH77063.1|833345_834014_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
ARH77064.1|834364_834958_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	3.1e-39
ARH77065.1|834941_836093_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 4
CP019595	Staphylococcus aureus strain GD1677 chromosome, complete genome	2790204	848063	862325	2790204		uncultured_Caudovirales_phage(50.0%)	17	NA	NA
ARH77075.1|848063_849122_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.9	1.5e-20
ARH77076.1|849280_849823_+	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
ARH77077.1|850068_850236_+	nitrogen fixation protein NifR	NA	NA	NA	NA	NA
ARH77078.1|850504_851422_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.8e-07
ARH77079.1|851512_851620_+	hypothetical protein	NA	NA	NA	NA	NA
ARH77080.1|851691_853197_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
ARH77081.1|853271_853466_-	hypothetical protein	NA	NA	NA	NA	NA
ARH77082.1|853537_854038_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	66.2	2.7e-52
ARH77083.1|854057_854924_-	DMT family transporter	NA	NA	NA	NA	NA
ARH77084.2|855308_855458_+	ribonucleoside-diphosphate reductase	NA	NA	NA	NA	NA
ARH77085.1|855725_856124_+	protein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
ARH77086.1|856086_858192_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
ARH77087.1|858311_859283_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
AWY02606.1|859324_859507_+	hypothetical protein	NA	NA	NA	NA	NA
ARH77088.1|859652_860624_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	80.2	7.8e-141
ARH77089.1|860610_861567_+	iron ABC transporter permease	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.6e-05
ARH77090.1|861563_862325_+	ATP-binding cassette domain-containing protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.1	7.2e-17
>prophage 5
CP019595	Staphylococcus aureus strain GD1677 chromosome, complete genome	2790204	1034182	1087307	2790204	protease,bacteriocin,tRNA,holin	Streptococcus_phage(33.33%)	54	NA	NA
ARH77256.1|1034182_1035172_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
ARH77257.1|1035466_1035862_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
ARH77258.1|1036232_1036952_+	adaptor protein MecA	NA	NA	NA	NA	NA
ARH77259.1|1037072_1038059_+	competence protein CoiA	NA	NA	NA	NA	NA
ARH77260.1|1038106_1039915_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.4	1.2e-46
ARH77261.1|1040374_1041181_-	DsbA family protein	NA	NA	NA	NA	NA
ARH77262.1|1041203_1041569_-	globin	NA	NA	NA	NA	NA
ARH77263.1|1041672_1042266_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
ARH77264.1|1042451_1042799_+	hypothetical protein	NA	NA	NA	NA	NA
ARH77265.1|1042815_1043451_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
ARH77266.1|1043467_1044277_+	NAD(+) kinase	NA	NA	NA	NA	NA
ARH77267.1|1044273_1045128_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
ARH77268.1|1045148_1046534_+	magnesium transporter	NA	NA	NA	NA	NA
ARH77269.1|1046543_1048388_+	sodium:proton antiporter	NA	NA	NA	NA	NA
ARH77270.1|1048665_1049436_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
ARH77271.1|1049632_1050718_-	AI-2E family transporter	NA	NA	NA	NA	NA
ARH77272.1|1051059_1052628_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
ARH77273.1|1052769_1053528_+	esterase family protein	NA	NA	NA	NA	NA
ARH77274.1|1053721_1054231_+	hypothetical protein	NA	NA	NA	NA	NA
ARH77275.1|1054343_1055552_-	MFS transporter	NA	NA	NA	NA	NA
ARH77276.1|1055511_1056687_-	diacylglycerol beta-glucosyltransferase	NA	NA	NA	NA	NA
ARH77277.1|1057117_1058602_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
ARH77278.1|1058582_1058843_+	hypothetical protein	NA	NA	NA	NA	NA
ARH77279.1|1058842_1060405_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.0	3.8e-36
ARH78928.1|1060706_1061510_+	hypothetical protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
ARH77280.1|1061728_1064053_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	27.4	2.1e-11
ARH77281.1|1064069_1065428_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
ARH77282.1|1065566_1067078_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
ARH77283.1|1067566_1068136_-	competence protein ComK	NA	NA	NA	NA	NA
ARH77284.1|1068345_1068564_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
ARH77285.1|1068644_1069631_-	lipoate--protein ligase	NA	NA	NA	NA	NA
ARH77286.1|1069829_1070006_+	DUF2187 domain-containing protein	NA	NA	NA	NA	NA
ARH77287.1|1070020_1070623_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
ARH77288.2|1070922_1071000_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
ARH77289.1|1071634_1071919_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
ARH77290.1|1071962_1073927_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
ARH77291.1|1073929_1074250_+	YxeA family protein	NA	NA	NA	NA	NA
ARH77292.1|1074246_1074888_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	33.7	1.0e-19
ARH77293.1|1074975_1075266_-	hypothetical protein	NA	NA	NA	NA	NA
ARH77294.1|1075406_1075544_+	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
ARH77295.1|1075632_1075989_-	DoxX family protein	NA	NA	NA	NA	NA
ARH77296.1|1076480_1077440_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
ARH77297.1|1077488_1077620_-	hypothetical protein	NA	NA	NA	NA	NA
ARH77298.1|1077683_1077974_-	NINE protein	NA	NA	NA	NA	NA
ARH77299.1|1078063_1078615_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
ARH77300.1|1078665_1079604_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
ARH78930.1|1079754_1079832_+	hypothetical protein	NA	NA	NA	NA	NA
ARH78929.1|1079935_1081147_+	isochorismate synthase	NA	NA	NA	NA	NA
ARH77301.1|1081133_1082807_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
ARH77302.1|1082793_1083597_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
ARH77303.1|1083589_1084411_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
ARH77304.1|1084648_1084978_-	staphostatin B	NA	NA	NA	NA	NA
ARH77305.1|1085015_1086197_-|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
ARH77306.1|1086278_1087307_-|protease	serine protease	protease	A0A2H4PQP7	Staphylococcus_phage	31.7	1.1e-15
>prophage 6
CP019595	Staphylococcus aureus strain GD1677 chromosome, complete genome	2790204	1105980	1114453	2790204		Synechococcus_phage(33.33%)	9	NA	NA
ARH78933.2|1105980_1106463_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
ARH77322.1|1106449_1107574_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
ARH77323.1|1107577_1108282_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	2.1e-47
ARH77324.1|1108281_1108545_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
ARH77325.1|1108546_1109218_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
ARH77326.1|1109210_1111400_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.9	1.3e-140
ARH77327.1|1111378_1112863_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	8.5e-46
ARH77328.1|1112855_1113884_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.1	2.9e-61
ARH77329.1|1113886_1114453_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	2.7e-29
>prophage 7
CP019595	Staphylococcus aureus strain GD1677 chromosome, complete genome	2790204	1370638	1377398	2790204	head	Staphylococcus_phage(83.33%)	9	NA	NA
ARH77575.1|1370638_1370836_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	50.0	9.9e-11
ARH78940.1|1371522_1371750_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	72.1	1.9e-18
ARH77576.1|1372050_1372257_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	55.2	5.5e-12
ARH77577.1|1372957_1373068_+	hypothetical protein	NA	NA	NA	NA	NA
ARH77578.1|1373460_1373646_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
ARH77579.1|1374156_1374573_+	hypothetical protein	NA	NA	NA	NA	NA
ARH77580.1|1375004_1375589_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	42.6	4.4e-30
ARH77582.1|1376237_1376489_+	hypothetical protein	NA	NA	NA	NA	NA
ARH77583.1|1376558_1377398_+|head	head morphogenesis protein	head	A0A1J0MFV1	Staphylococcus_phage	50.7	1.1e-29
>prophage 8
CP019595	Staphylococcus aureus strain GD1677 chromosome, complete genome	2790204	1649571	1657883	2790204	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
ARH77821.1|1649571_1650357_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
ARH77822.1|1650482_1651373_-	endonuclease	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
ARH77823.1|1651382_1652729_-	ATP-dependent helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
ARH77824.1|1652842_1653943_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	1.0e-08
ARH77825.1|1653945_1654623_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
ARH77826.1|1654753_1655860_-	RNA polymerase sigma factor SigA	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
ARH77827.1|1656083_1657883_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 9
CP019595	Staphylococcus aureus strain GD1677 chromosome, complete genome	2790204	1727308	1736351	2790204	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
ARH77897.1|1727308_1727827_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
ARH77898.1|1727848_1730122_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	2.1e-64
ARH77899.1|1730324_1732604_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
ARH77900.1|1732878_1733139_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
ARH77901.1|1733157_1734297_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
ARH77902.1|1734319_1735345_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
ARH77903.1|1735346_1736351_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 10
CP019595	Staphylococcus aureus strain GD1677 chromosome, complete genome	2790204	1860086	1907931	2790204	protease,tRNA,transposase	Staphylococcus_phage(91.89%)	48	NA	NA
ARH78011.1|1860086_1866635_-	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	95.1	5.7e-296
ARH78012.1|1866958_1867270_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	95.1	1.3e-49
ARH78013.2|1867291_1869709_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.1	0.0e+00
ARH78014.1|1869996_1871178_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
ARH78015.1|1871287_1872241_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	6.4e-79
ARH78016.1|1872237_1872801_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	95.7	7.3e-99
ARH78017.1|1872919_1873321_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
ARH78018.1|1873893_1874721_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
ARH78019.1|1874723_1874843_-	hypothetical protein	NA	NA	NA	NA	NA
ARH78020.1|1874854_1875046_-	hypothetical protein	NA	NA	NA	NA	NA
ARH78021.1|1874954_1875956_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
ARH78022.1|1876083_1876542_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	97.4	4.1e-68
ARH78023.1|1876554_1877736_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	1.9e-226
ARH78024.1|1877746_1878379_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
ARH78960.1|1878385_1879417_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.1	3.1e-196
ARH78025.1|1879909_1881412_-	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	5.0e-30
ARH78026.1|1882054_1882369_+	ArsR family transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	1.3e-52
ARH78027.1|1882368_1883661_+	arsenical efflux pump membrane protein ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	94.7	7.5e-216
ARH78028.1|1883747_1884602_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
ARH78029.1|1884877_1885102_-	hypothetical protein	NA	NA	NA	NA	NA
ARH78030.1|1885300_1885771_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	84.6	5.0e-69
ARH78031.1|1885883_1886327_+	competence protein ComK	NA	NA	NA	NA	NA
ARH78032.1|1886313_1886757_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	78.6	6.4e-50
ARH78033.1|1887054_1887690_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
ARH78034.1|1887856_1888477_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
ARH78035.1|1889039_1889753_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
ARH78036.1|1890011_1890314_+	hypothetical protein	NA	NA	NA	NA	NA
ARH78037.1|1890568_1890934_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	98.3	6.9e-58
ARH78038.1|1890930_1891284_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	82.1	2.3e-18
ARH78039.1|1891533_1892367_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.9	1.7e-157
ARH78040.1|1892578_1893487_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.3	1.3e-137
ARH78041.1|1893611_1894805_-	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
ARH78042.1|1895176_1896769_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.6	0.0e+00
ARH78961.1|1897065_1897812_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.0	7.8e-141
ARH78043.1|1897816_1898290_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
ARH78044.1|1898355_1898613_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
ARH78045.1|1898609_1899611_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	86.5	3.3e-163
ARH78046.1|1899615_1901094_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	95.5	6.7e-277
ARH78962.1|1901252_1901708_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	96.6	8.3e-77
ARH78047.1|1902010_1902673_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	87.7	2.8e-49
ARH78048.1|1902753_1903749_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	94.8	1.3e-69
ARH78049.1|1903824_1904451_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	9.9e-81
ARH78050.1|1904491_1904836_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	96.5	5.1e-55
ARH78051.1|1904933_1905506_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	3.5e-24
ARH78052.1|1905703_1906261_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	98.1	1.1e-78
ARH78053.1|1906630_1906807_-	hypothetical protein	NA	NA	NA	NA	NA
ARH78054.1|1906817_1907201_-	hypothetical protein	NA	NA	NA	NA	NA
ARH78055.1|1907649_1907931_-|transposase	IS3 family transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	63.4	3.2e-23
