assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002089035.2_ASM208903v2	CP019591	Staphylococcus aureus strain 293G chromosome, complete genome	1	260436-260635	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,TnsE_C,WYL	Orphan	TGCAAGTTGGCGGGGCCCCAACACAGAAGCT	31	2	2	260467-260491|260523-260547	CP019591.2_260636-260660|CP019591.2_2072925-2072949	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	NA,NA|131aa|down_5|CP019591.2_265811_266204_+	NA|574aa|up_9|CP019591.2_247882_249604_+	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1	NA|225aa|up_8|CP019591.2_249747_250422_+	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA	NA|580aa|up_7|CP019591.2_250683_252423_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|247aa|up_6|CP019591.2_252425_253166_+	PRK14084, PRK14084, DNA-binding response regulator	NA|148aa|up_5|CP019591.2_253278_253722_+	PRK04125, PRK04125, antiholin-like protein LrgA	NA|234aa|up_4|CP019591.2_253714_254416_+	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional	NA|764aa|up_3|CP019591.2_254756_257048_+	COG3256, NorB, Nitric oxide reductase large subunit [Inorganic ion transport and metabolism]	NA|235aa|up_2|CP019591.2_257273_257978_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|264aa|up_1|CP019591.2_258126_258918_+	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism]	NA|479aa|up_0|CP019591.2_258933_260370_+	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed	NA|254aa|down_0|CP019591.2_260945_261707_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|305aa|down_1|CP019591.2_261958_262873_-	TIGR02152, Putative_ribokinase, ribokinase	NA|135aa|down_2|CP019591.2_262900_263305_-	PRK11797, PRK11797, D-ribose pyranase; Provisional	NA|294aa|down_3|CP019591.2_263319_264201_-	pfam06800, Sugar_transport, Sugar transport protein	NA|333aa|down_4|CP019591.2_264432_265431_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|131aa|down_5|CP019591.2_265811_266204_+	NA	NA|459aa|down_6|CP019591.2_266332_267709_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|331aa|down_7|CP019591.2_267942_268935_+	COG3049, COG3049, Penicillin V acylase and related amidases [Cell envelope biogenesis, outer membrane]	NA|317aa|down_8|CP019591.2_269260_270211_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|220aa|down_9|CP019591.2_270262_270922_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]
GCA_002089035.2_ASM208903v2	CP019591	Staphylococcus aureus strain 293G chromosome, complete genome	2	614287-614395	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,TnsE_C,WYL	Orphan	AAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAA	39	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	NA,NA|169aa|down_4|CP019591.2_618128_618635_+,NA|239aa|down_5|CP019591.2_618796_619513_+	NA|209aa|up_9|CP019591.2_603791_604418_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|313aa|up_8|CP019591.2_604687_605626_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_7|CP019591.2_606071_606608_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_6|CP019591.2_606777_607254_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_5|CP019591.2_607293_608589_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_4|CP019591.2_608616_609138_+	pfam08741, YwhD, YwhD family	NA|337aa|up_3|CP019591.2_609636_610647_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|128aa|up_2|CP019591.2_610955_611339_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|CP019591.2_611335_612997_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|CP019591.2_613481_614117_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_0|CP019591.2_614506_615334_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|CP019591.2_615484_616435_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|CP019591.2_616489_617209_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|CP019591.2_617192_617993_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|CP019591.2_618128_618635_+	NA	NA|239aa|down_5|CP019591.2_618796_619513_+	NA	NA|263aa|down_6|CP019591.2_619681_620470_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|CP019591.2_620721_621096_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|CP019591.2_622043_622973_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|CP019591.2_623165_623390_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCA_002089035.2_ASM208903v2	CP019591	Staphylococcus aureus strain 293G chromosome, complete genome	3	777588-777670	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,TnsE_C,WYL	Orphan	CACCCCAACTCGCATTGCTTGTAGAA	26	1	21	777614-777644|777614-777644|777614-777644|777614-777644|777614-777644|777614-777644|777614-777644|777614-777644|777614-777644|777614-777644|777614-777644|777614-777644|777614-777644|777614-777644|777614-777644|777614-777644|777614-777644|777614-777644|777614-777644|777614-777644|777614-777644	CP019591.2_871998-871968|CP019591.2_892760-892790|CP019591.2_1873992-1874022|CP019591.2_1987104-1987134|CP019591.2_242564-242594|CP019591.2_336247-336217|CP019591.2_605784-605754|CP019591.2_731301-731271|CP019591.2_822630-822660|CP019591.2_985727-985757|CP019591.2_1086052-1086022|CP019591.2_1086106-1086076|CP019591.2_1679087-1679057|CP019591.2_1769863-1769833|CP019591.2_2236365-2236395|CP019591.2_786595-786625|CP019591.2_826768-826738|CP019591.2_1295056-1295086|CP019591.2_1341145-1341175|CP019591.2_2247113-2247143|CP019591.2_2682307-2682337	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	NA|77aa|up_6|CP019591.2_771871_772102_-,NA|32aa|up_5|CP019591.2_772117_772213_-,NA	NA|79aa|up_9|CP019591.2_766497_766734_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_8|CP019591.2_767002_768988_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_7|CP019591.2_768995_771842_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|77aa|up_6|CP019591.2_771871_772102_-	NA	NA|32aa|up_5|CP019591.2_772117_772213_-	NA	NA|311aa|up_4|CP019591.2_772451_773384_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|CP019591.2_773389_774229_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|CP019591.2_774236_774722_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|CP019591.2_774729_776169_+	sd00006, TPR, Tetratricopeptide repeat	NA|312aa|up_0|CP019591.2_776235_777171_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|CP019591.2_777938_778850_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|CP019591.2_778846_779842_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|CP019591.2_779950_780895_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|CP019591.2_781464_782052_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|545aa|down_4|CP019591.2_782234_783869_+	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase	NA|301aa|down_5|CP019591.2_784075_784978_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_6|CP019591.2_785680_786310_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_7|CP019591.2_787084_788098_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_8|CP019591.2_788150_789161_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_9|CP019591.2_789299_790490_+	PRK00073, pgk, phosphoglycerate kinase; Provisional
GCA_002089035.2_ASM208903v2	CP019591	Staphylococcus aureus strain 293G chromosome, complete genome	4	827037-827117	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,TnsE_C,WYL	Orphan	TCTTTATCATTTCTGTCCCACTCCC	25	1	1	827062-827092	CP019591.2_772041-772011	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	NA|38aa|up_7|CP019591.2_821279_821393_+,NA|65aa|up_0|CP019591.2_826610_826805_-,NA|105aa|down_7|CP019591.2_834722_835037_-	NA|119aa|up_9|CP019591.2_820320_820677_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_8|CP019591.2_820834_821215_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_7|CP019591.2_821279_821393_+	NA	NA|293aa|up_6|CP019591.2_821394_822273_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|up_5|CP019591.2_822974_823361_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|up_4|CP019591.2_823353_823650_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|up_3|CP019591.2_823899_824925_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|up_2|CP019591.2_824917_825613_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|up_1|CP019591.2_825630_826452_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|up_0|CP019591.2_826610_826805_-	NA	NA|65aa|down_0|CP019591.2_827259_827454_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_1|CP019591.2_827686_828538_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_2|CP019591.2_828865_829627_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_3|CP019591.2_829725_831033_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_4|CP019591.2_831147_832389_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|155aa|down_5|CP019591.2_832378_832843_+	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|466aa|down_6|CP019591.2_832993_834391_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|105aa|down_7|CP019591.2_834722_835037_-	NA	NA|347aa|down_8|CP019591.2_835405_836446_+	COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]	NA|356aa|down_9|CP019591.2_836459_837527_+	COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
GCA_002089035.2_ASM208903v2	CP019591	Staphylococcus aureus strain 293G chromosome, complete genome	5	1679100-1679186	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,TnsE_C,WYL	Orphan	TGCAAGTTGGGGTGGGGCCCCAACATAGA	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	NA,NA	NA|423aa|up_9|CP019591.2_1663567_1664836_-	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|374aa|up_8|CP019591.2_1664884_1666006_-	PRK14035, PRK14035, citrate synthase; Provisional	NA|454aa|up_7|CP019591.2_1666353_1667715_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|586aa|up_6|CP019591.2_1668058_1669816_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|323aa|up_5|CP019591.2_1669837_1670806_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|315aa|up_4|CP019591.2_1671074_1672019_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|286aa|up_3|CP019591.2_1672018_1672876_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|410aa|up_2|CP019591.2_1673070_1674300_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|1066aa|up_1|CP019591.2_1674748_1677946_-	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|314aa|up_0|CP019591.2_1677966_1678908_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|433aa|down_0|CP019591.2_1679277_1680576_-	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|138aa|down_1|CP019591.2_1680780_1681194_+	pfam00582, Usp, Universal stress protein family	NA|230aa|down_2|CP019591.2_1681699_1682389_-	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|352aa|down_3|CP019591.2_1682563_1683619_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|373aa|down_4|CP019591.2_1683934_1685053_-	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|167aa|down_5|CP019591.2_1685193_1685694_+	pfam00582, Usp, Universal stress protein family	NA|401aa|down_6|CP019591.2_1685940_1687143_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|316aa|down_7|CP019591.2_1687230_1688178_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|165aa|down_8|CP019591.2_1688300_1688795_-	PRK00522, tpx, thiol peroxidase	NA|257aa|down_9|CP019591.2_1688892_1689663_-	PRK10621, PRK10621, hypothetical protein; Provisional
GCA_002089035.2_ASM208903v2	CP019591	Staphylococcus aureus strain 293G chromosome, complete genome	6	1681520-1681602	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,TnsE_C,WYL	Orphan	GAAGCTGACGAAAAAGTCAGCTTAC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	NA|35aa|up_2|CP019591.2_1679138_1679243_+,NA	NA|586aa|up_9|CP019591.2_1668058_1669816_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|323aa|up_8|CP019591.2_1669837_1670806_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|315aa|up_7|CP019591.2_1671074_1672019_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|286aa|up_6|CP019591.2_1672018_1672876_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|410aa|up_5|CP019591.2_1673070_1674300_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|1066aa|up_4|CP019591.2_1674748_1677946_-	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|314aa|up_3|CP019591.2_1677966_1678908_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|35aa|up_2|CP019591.2_1679138_1679243_+	NA	NA|433aa|up_1|CP019591.2_1679277_1680576_-	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|138aa|up_0|CP019591.2_1680780_1681194_+	pfam00582, Usp, Universal stress protein family	NA|230aa|down_0|CP019591.2_1681699_1682389_-	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|352aa|down_1|CP019591.2_1682563_1683619_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|373aa|down_2|CP019591.2_1683934_1685053_-	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|167aa|down_3|CP019591.2_1685193_1685694_+	pfam00582, Usp, Universal stress protein family	NA|401aa|down_4|CP019591.2_1685940_1687143_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|316aa|down_5|CP019591.2_1687230_1688178_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|165aa|down_6|CP019591.2_1688300_1688795_-	PRK00522, tpx, thiol peroxidase	NA|257aa|down_7|CP019591.2_1688892_1689663_-	PRK10621, PRK10621, hypothetical protein; Provisional	NA|408aa|down_8|CP019591.2_1689706_1690930_-	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional	NA|383aa|down_9|CP019591.2_1690929_1692078_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
GCA_002089035.2_ASM208903v2	CP019591	Staphylococcus aureus strain 293G chromosome, complete genome	7	1769872-1769965	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	Type I-A	GCAATGCGCGTTGGGGTGTGGGGCCCCAACATAG	34	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	NA|75aa|up_5|CP019591.2_1765965_1766190_-,NA|148aa|up_2|CP019591.2_1767401_1767845_-,NA|101aa|down_1|CP019591.2_1771099_1771402_+	NA|501aa|up_9|CP019591.2_1760997_1762500_-	COG4529, COG4529, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|105aa|up_8|CP019591.2_1763142_1763457_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|431aa|up_7|CP019591.2_1763456_1764749_+	PRK15445, PRK15445, arsenical efflux pump membrane protein ArsB	NA|285aa|up_6|CP019591.2_1764835_1765690_-	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|75aa|up_5|CP019591.2_1765965_1766190_-	NA	NA|157aa|up_4|CP019591.2_1766388_1766859_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|148aa|up_3|CP019591.2_1766971_1767415_+	pfam06338, ComK, ComK protein	NA|148aa|up_2|CP019591.2_1767401_1767845_-	NA	NA|212aa|up_1|CP019591.2_1768142_1768778_+	pfam02517, Abi, CAAX protease self-immunity	NA|207aa|up_0|CP019591.2_1768944_1769565_+	pfam02517, Abi, CAAX protease self-immunity	NA|238aa|down_0|CP019591.2_1770127_1770841_-	PRK12376, PRK12376, putative translaldolase; Provisional	NA|101aa|down_1|CP019591.2_1771099_1771402_+	NA	NA|122aa|down_2|CP019591.2_1771656_1772022_+	PRK14201, PRK14201, fluoride efflux transporter CrcB	NA|118aa|down_3|CP019591.2_1772018_1772372_+	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|278aa|down_4|CP019591.2_1772621_1773455_-	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	NA|303aa|down_5|CP019591.2_1773666_1774575_-	pfam08378, NERD, Nuclease-related domain	NA|398aa|down_6|CP019591.2_1774699_1775893_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|531aa|down_7|CP019591.2_1776264_1777857_+	cd00484, PEPCK_ATP, Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis	NA|249aa|down_8|CP019591.2_1778153_1778900_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|158aa|down_9|CP019591.2_1778904_1779378_-	TIGR02705, conserved_hypothetical_protein, nucleoside triphosphatase YtkD
GCA_002089035.2_ASM208903v2	CP019591	Staphylococcus aureus strain 293G chromosome, complete genome	8	2061851-2062063	8	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,TnsE_C,WYL	Orphan	TGATGTGCTGTTGTGGAAGCTTGGTGTCGTGCCATGCTACTTTGATG	47	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	NA|46aa|up_4|CP019591.2_2058712_2058850_-,NA|107aa|down_0|CP019591.2_2062096_2062417_+	NA|232aa|up_9|CP019591.2_2051404_2052100_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|507aa|up_8|CP019591.2_2052452_2053973_-	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|452aa|up_7|CP019591.2_2054488_2055844_-	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]	NA|357aa|up_6|CP019591.2_2055858_2056929_-	PRK01966, ddl, D-alanine--D-alanine ligase	NA|401aa|up_5|CP019591.2_2057246_2058449_+	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|46aa|up_4|CP019591.2_2058712_2058850_-	NA	NA|70aa|up_3|CP019591.2_2058977_2059187_-	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	NA|98aa|up_2|CP019591.2_2059198_2059492_-	cd10152, SaCsoR-like_DUF156, Staphylococcus aureus copper-sensitive operon repressor (CsoR), and related domains; this family was previously known as part of DUF156	NA|495aa|up_1|CP019591.2_2059657_2061142_+	TIGR04265, bac_cardiolipin, cardiolipin synthase	NA|216aa|up_0|CP019591.2_2061169_2061817_+	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only]	NA|107aa|down_0|CP019591.2_2062096_2062417_+	NA	NA|291aa|down_1|CP019591.2_2064058_2064931_-	PRK02463, PRK02463, OxaA-like protein precursor; Provisional	NA|214aa|down_2|CP019591.2_2065016_2065658_-	PRK00043, thiE, thiamine phosphate synthase	NA|264aa|down_3|CP019591.2_2065659_2066451_-	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated	NA|277aa|down_4|CP019591.2_2066434_2067265_-	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|230aa|down_5|CP019591.2_2067257_2067947_-	TIGR04306, salvage_TenA, thiaminase II	NA|232aa|down_6|CP019591.2_2068333_2069029_-	pfam06737, Transglycosylas, Transglycosylase-like domain	NA|132aa|down_7|CP019591.2_2069417_2069813_-	pfam00436, SSB, Single-strand binding protein family	NA|168aa|down_8|CP019591.2_2069943_2070447_+	pfam14183, YwpF, YwpF-like protein	NA|147aa|down_9|CP019591.2_2070503_2070944_-	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ
GCA_002089035.2_ASM208903v2	CP019591	Staphylococcus aureus strain 293G chromosome, complete genome	9	2117499-2117649	9	CRISPRCasFinder	no	csa3,TnsE_C	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	NA|77aa|up_5|CP019591.2_2112371_2112602_-,NA|364aa|up_0|CP019591.2_2116389_2117481_+,NA|35aa|down_0|CP019591.2_2117978_2118083_-,NA|61aa|down_1|CP019591.2_2118515_2118698_-,NA|53aa|down_2|CP019591.2_2118762_2118921_+,NA|31aa|down_3|CP019591.2_2119356_2119449_+	NA|237aa|up_9|CP019591.2_2107964_2108675_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|CP019591.2_2108795_2109239_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|CP019591.2_2109438_2109852_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|CP019591.2_2110309_2111683_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|CP019591.2_2112371_2112602_-	NA	NA|313aa|up_4|CP019591.2_2112632_2113571_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|CP019591.2_2114004_2114670_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|CP019591.2_2114821_2115142_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|CP019591.2_2115143_2116124_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|CP019591.2_2116389_2117481_+	NA	NA|35aa|down_0|CP019591.2_2117978_2118083_-	NA	NA|61aa|down_1|CP019591.2_2118515_2118698_-	NA	NA|53aa|down_2|CP019591.2_2118762_2118921_+	NA	NA|31aa|down_3|CP019591.2_2119356_2119449_+	NA	NA|286aa|down_4|CP019591.2_2119578_2120436_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_5|CP019591.2_2120503_2121286_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|203aa|down_6|CP019591.2_2121575_2122184_-	pfam08937, DUF1863, MTH538 TIR-like domain (DUF1863)	NA|345aa|down_7|CP019591.2_2122211_2123246_-	pfam13676, TIR_2, TIR domain	NA|97aa|down_8|CP019591.2_2124867_2125158_-	pfam11867, DUF3387, Domain of unknown function (DUF3387)	TnsE_C|135aa|down_9|CP019591.2_2125282_2125687_-	pfam18623, TnsE_C, TnsE C-terminal domain
GCA_002089035.2_ASM208903v2	CP019591	Staphylococcus aureus strain 293G chromosome, complete genome	10	2281428-2281513	10	CRISPRCasFinder	no	WYL	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	Unclear	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	7	2281458-2281483|2281458-2281483|2281458-2281483|2281458-2281483|2281458-2281483|2281458-2281483|2281458-2281483	CP019591.2_1559224-1559199|CP019591.2_822719-822694|CP019591.2_826839-826864|CP019591.2_871773-871798|CP019591.2_1290727-1290752|CP019591.2_2072963-2072988|CP019591.2_2413308-2413283	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	NA|65aa|up_7|CP019591.2_2274230_2274425_-,NA|76aa|up_0|CP019591.2_2281187_2281415_-,NA|78aa|down_1|CP019591.2_2282463_2282697_-,NA|110aa|down_8|CP019591.2_2290785_2291115_+	NA|652aa|up_9|CP019591.2_2270787_2272743_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|270aa|up_8|CP019591.2_2273352_2274162_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|65aa|up_7|CP019591.2_2274230_2274425_-	NA	NA|467aa|up_6|CP019591.2_2274598_2275999_-	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC	NA|361aa|up_5|CP019591.2_2276093_2277176_-	pfam02317, Octopine_DH, NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain	NA|141aa|up_4|CP019591.2_2277423_2277846_+	COG3296, COG3296, Uncharacterized protein conserved in bacteria [Function unknown]	NA|167aa|up_3|CP019591.2_2278082_2278583_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|318aa|up_2|CP019591.2_2278945_2279899_+	cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains	NA|375aa|up_1|CP019591.2_2279990_2281115_-	PRK06753, PRK06753, hypothetical protein; Provisional	NA|76aa|up_0|CP019591.2_2281187_2281415_-	NA	NA|213aa|down_0|CP019591.2_2281665_2282304_-	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|78aa|down_1|CP019591.2_2282463_2282697_-	NA	NA|158aa|down_2|CP019591.2_2282991_2283465_-	COG2427, COG2427, Uncharacterized conserved protein [Function unknown]	NA|985aa|down_3|CP019591.2_2283464_2286419_-	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|308aa|down_4|CP019591.2_2287020_2287944_-	PRK09379, PRK09379, LytR family transcriptional regulator	NA|266aa|down_5|CP019591.2_2288100_2288898_-	COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism]	WYL|231aa|down_6|CP019591.2_2289282_2289975_+	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|246aa|down_7|CP019591.2_2289999_2290737_-	pfam02517, Abi, CAAX protease self-immunity	NA|110aa|down_8|CP019591.2_2290785_2291115_+	NA	NA|291aa|down_9|CP019591.2_2291559_2292432_+	COG1737, RpiR, Transcriptional regulators [Transcription]
GCA_002089035.2_ASM208903v2	CP019591	Staphylococcus aureus strain 293G chromosome, complete genome	11	2397847-2397941	11	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,TnsE_C,WYL	Orphan	TTCTTCAAATTTATTTGTTAGAAAGGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	NA|50aa|up_3|CP019591.2_2395324_2395474_-,NA|35aa|up_2|CP019591.2_2395568_2395673_+,NA|40aa|down_0|CP019591.2_2398119_2398239_-,NA|72aa|down_2|CP019591.2_2399547_2399763_-	NA|121aa|up_9|CP019591.2_2389663_2390026_-	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|417aa|up_8|CP019591.2_2390280_2391531_+	pfam02388, FemAB, FemAB family	NA|244aa|up_7|CP019591.2_2391627_2392359_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|240aa|up_6|CP019591.2_2392355_2393075_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|260aa|up_5|CP019591.2_2393055_2393835_-	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|468aa|up_4|CP019591.2_2393955_2395359_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|50aa|up_3|CP019591.2_2395324_2395474_-	NA	NA|35aa|up_2|CP019591.2_2395568_2395673_+	NA	NA|229aa|up_1|CP019591.2_2395826_2396513_-	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|289aa|up_0|CP019591.2_2396839_2397706_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|40aa|down_0|CP019591.2_2398119_2398239_-	NA	NA|437aa|down_1|CP019591.2_2398333_2399644_+	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|72aa|down_2|CP019591.2_2399547_2399763_-	NA	NA|310aa|down_3|CP019591.2_2400179_2401109_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|316aa|down_4|CP019591.2_2401676_2402624_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|326aa|down_5|CP019591.2_2402625_2403603_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|156aa|down_6|CP019591.2_2403654_2404122_-	pfam06177, QueT, QueT transporter	NA|231aa|down_7|CP019591.2_2404132_2404825_-	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|372aa|down_8|CP019591.2_2404835_2405951_-	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|336aa|down_9|CP019591.2_2405928_2406936_-	PRK06256, PRK06256, biotin synthase; Validated
GCA_002089035.2_ASM208903v2	CP019591	Staphylococcus aureus strain 293G chromosome, complete genome	12	2457571-2457665	12	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,TnsE_C,WYL	Orphan	AGGCTCTTATGCAGTTGGTGCGAAGCAA	28	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,WYL	NA|249aa|up_9|CP019591.2_2447156_2447903_+,NA|121aa|down_0|CP019591.2_2458333_2458696_-,NA|105aa|down_8|CP019591.2_2465508_2465823_+	NA|249aa|up_9|CP019591.2_2447156_2447903_+	NA	NA|398aa|up_8|CP019591.2_2448126_2449320_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|250aa|up_7|CP019591.2_2449331_2450081_-	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|272aa|up_6|CP019591.2_2450073_2450889_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|290aa|up_5|CP019591.2_2450885_2451755_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|312aa|up_4|CP019591.2_2451751_2452687_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|533aa|up_3|CP019591.2_2452699_2454298_-	TIGR02294, Nickel-binding_periplasmic_protein, nickel ABC transporter, nickel/metallophore periplasmic binding protein	NA|434aa|up_2|CP019591.2_2454440_2455742_-	COG4408, COG4408, Uncharacterized protein conserved in bacteria [Function unknown]	NA|273aa|up_1|CP019591.2_2455734_2456553_-	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family	NA|274aa|up_0|CP019591.2_2456563_2457385_-	COG0253, DapF, Diaminopimelate epimerase [Amino acid transport and metabolism]	NA|121aa|down_0|CP019591.2_2458333_2458696_-	NA	NA|273aa|down_1|CP019591.2_2458958_2459777_-	PRK08589, PRK08589, SDR family oxidoreductase	NA|513aa|down_2|CP019591.2_2460010_2461549_+	pfam03806, ABG_transport, AbgT putative transporter family	NA|141aa|down_3|CP019591.2_2461660_2462083_-	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|133aa|down_4|CP019591.2_2462554_2462953_-	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|137aa|down_5|CP019591.2_2462979_2463390_-	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|128aa|down_6|CP019591.2_2463844_2464228_-	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|403aa|down_7|CP019591.2_2464294_2465503_+	cd07657, F-BAR_Fes_Fer, The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases	NA|105aa|down_8|CP019591.2_2465508_2465823_+	NA	NA|140aa|down_9|CP019591.2_2467699_2468119_-	pfam07252, DUF1433, Protein of unknown function (DUF1433)
