The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP015904	Lactococcus lactis subsp. lactis strain UC11 chromosome, complete genome	2381789	378224	399881	2381789	tRNA	Lactococcus_phage(47.62%)	32	NA	NA
ARE12703.1|378224_378542_+	Thiol-disulfide isomerase and thioredoxin	NA	A0A0K2FIM3	Achromobacter_phage	30.4	4.5e-05
ARE12704.1|378627_379254_+|tRNA	tRNA-binding protein	tRNA	NA	NA	NA	NA
ARE12705.1|379416_380757_+	NADH oxidase H2O-forming	NA	NA	NA	NA	NA
ARE12706.1|380845_381235_+	single-stranded DNA-binding protein	NA	A0A0K0MWE1	Streptococcus_phage	45.0	1.8e-24
ARE12707.1|381354_381639_+	Co-chaperonin GroES (HSP10)	NA	A0A221S386	uncultured_virus	44.1	3.1e-13
ARE12708.1|381727_383356_+	Chaperonin GroEL (HSP60 family)	NA	A0A219YK78	uncultured_virus	56.8	4.9e-156
ARE12709.1|383401_384214_-	Metal-dependent hydrolase of the beta-lactamase superfamily I	NA	A0A0C5AJ83	Bacteriophage	38.1	3.1e-34
ARE12710.1|384382_385825_-	PAS/PAC sensor signal transduction histidine kinase	NA	W8CYF6	Bacillus_phage	33.0	1.4e-32
ARE12711.1|385817_386519_-	DNA-binding response regulator OmpR family (Rec-wHTH domains)	NA	W8CYM9	Bacillus_phage	39.7	1.2e-42
ARE12712.1|386696_387332_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	65.0	5.4e-74
ARE12713.1|387464_388325_+	DNA polymerase III delta prime subunit	NA	M1NSC1	Streptococcus_phage	44.5	1.6e-65
ARE12714.1|388376_389159_+	Phosphorelay inhibitor	NA	NA	NA	NA	NA
ARE12715.1|389151_389478_+	Regulator of replication initiation timing	NA	NA	NA	NA	NA
ARE12716.1|389477_390353_+	16S rRNA methyltransferase	NA	M1PLC5	Streptococcus_phage	65.4	8.7e-99
ARE12717.1|390429_390621_-	hypothetical protein	NA	NA	NA	NA	NA
ARE12718.1|391948_392281_-	hypothetical protein	NA	Q9AZE0	Lactococcus_phage	69.4	2.1e-37
ARE12719.1|392280_392592_-	hypothetical protein	NA	NA	NA	NA	NA
ARE12720.1|392769_393342_-	hypothetical protein	NA	NA	NA	NA	NA
ARE12721.1|393355_393670_-	hypothetical protein	NA	NA	NA	NA	NA
ARE12722.1|393789_393939_-	hypothetical protein	NA	NA	NA	NA	NA
ARE12723.1|393962_394703_-	hypothetical protein	NA	A0A1P8BLT1	Lactococcus_phage	41.7	5.3e-41
ARE12724.1|394702_395440_-	hypothetical protein	NA	A0A1P8BKE9	Lactococcus_phage	95.6	5.1e-68
ARE12725.1|395452_395779_-	hypothetical protein	NA	Q9AZE7	Lactococcus_phage	88.9	5.2e-49
ARE12726.1|395765_396029_-	hypothetical protein	NA	Q9AZE9	Lactococcus_phage	75.9	6.1e-32
ARE12727.1|396025_396271_-	hypothetical protein	NA	Q9AZJ0	Lactococcus_phage	67.1	2.2e-23
ARE12728.1|396280_396523_-	hypothetical protein	NA	NA	NA	NA	NA
ARE12729.1|396548_396818_-	hypothetical protein	NA	Q9AZH3	Lactococcus_phage	59.6	1.3e-18
ARE12730.1|396814_397333_-	hypothetical protein	NA	Q9AZJ3	Lactococcus_phage	45.5	2.6e-18
ARE12731.1|397337_397532_-	hypothetical protein	NA	Q9AZJ4	Lactococcus_phage	96.9	5.1e-28
ARE12732.1|397676_397856_-	hypothetical protein	NA	NA	NA	NA	NA
ARE12733.1|397991_398615_+	Transcriptional regulator xre family	NA	A0A2H4J6F9	uncultured_Caudovirales_phage	34.3	1.1e-07
ARE12734.1|398681_399881_+	Integrase	NA	Q9AZI0	Lactococcus_phage	79.7	3.3e-181
>prophage 2
CP015904	Lactococcus lactis subsp. lactis strain UC11 chromosome, complete genome	2381789	978553	1002004	2381789		Staphylococcus_phage(21.43%)	22	NA	NA
ARE13265.1|978553_979246_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	34.4	2.7e-31
ARE13266.1|979238_980174_+	cell division protein ftsX-like protein	NA	NA	NA	NA	NA
ARE13267.1|980275_981253_-	ribonucleoside-diphosphate reductase class Ib beta subunit	NA	A0A096XT60	Enterococcus_phage	66.0	1.9e-118
ARE13268.1|981601_983770_-	ribonucleoside-diphosphate reductase class Ib alpha subunit	NA	A8E2R1	Enterococcus_phage	61.1	2.3e-257
ARE13269.1|983905_984328_-	Ribonucleotide reduction protein	NA	A0A142F1R4	Bacillus_phage	37.3	2.3e-12
ARE13270.1|984329_984548_-	ribonucleoside-diphosphate reductase class Ib glutaredoxin subunit	NA	C3U2K9	Lactococcus_phage	47.6	7.6e-12
ARE13271.1|984721_985360_-	acyl-phosphate glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
ARE13272.1|985634_987569_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	43.5	1.1e-125
ARE13273.1|987773_988244_+	isochorismatase	NA	NA	NA	NA	NA
ARE13274.1|988306_989140_+	DNA polymerase III epsilon subunit related 3-5 exonuclease	NA	A0A0K2SUJ2	Clostridium_phage	39.4	3.1e-21
ARE13275.1|989136_989586_+	Acetyltransferase GNAT family	NA	NA	NA	NA	NA
ARE13276.1|989860_992335_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	32.2	4.2e-98
ARE13277.1|992360_993266_-	Mg2+ and Co2+ transporter	NA	NA	NA	NA	NA
ARE13278.1|993734_994823_+	riboflavin biosynthesis protein RibD	NA	A0A1V0SE20	Indivirus	38.8	1.9e-50
ARE13279.1|994822_995473_+	Riboflavin synthase alpha chain	NA	A0A2H4PQS5	Staphylococcus_phage	43.1	9.4e-42
ARE13280.1|995481_996678_+	GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	51.3	2.7e-111
ARE13281.1|996705_997170_+	Riboflavin synthase beta chain	NA	A0A2H4PQS3	Staphylococcus_phage	53.7	1.8e-39
ARE13282.1|997272_997725_+	signal peptidase II Aspartic peptidase MEROPS family A08	NA	NA	NA	NA	NA
ARE13283.1|997785_998691_+	ribosomal large subunit pseudouridine synthase D	NA	A0A2H4UV25	Bodo_saltans_virus	28.2	5.4e-11
ARE13284.1|998839_999283_+	hypothetical protein	NA	NA	NA	NA	NA
ARE13285.1|999473_1001045_+	hypothetical protein	NA	NA	NA	NA	NA
ARE13286.1|1001047_1002004_+	Glycosyltransferase	NA	I1TED8	Salmonella_phage	37.5	5.3e-49
>prophage 3
CP015904	Lactococcus lactis subsp. lactis strain UC11 chromosome, complete genome	2381789	1264181	1273093	2381789		Lactobacillus_phage(33.33%)	10	NA	NA
ARE13527.1|1264181_1264676_-	RecA protein	NA	A0A2D1GPX2	Mycobacterium_phage	35.9	1.8e-21
ARE13528.1|1265261_1266473_-	NADPH-dependent FMN reductase	NA	A0A2P0ZL82	Lactobacillus_phage	57.4	7.9e-58
ARE13529.1|1266526_1267132_-	FMN reductase	NA	A0A2P0ZL77	Lactobacillus_phage	52.7	8.8e-50
ARE13530.1|1267147_1268071_-	Membrane-associated lipoprotein for thiamine biosynthesis	NA	NA	NA	NA	NA
ARE13531.1|1268250_1269303_-	nucleoside-binding protein	NA	A0A0A7DN02	Lactobacillus_phage	39.7	8.1e-59
ARE13532.1|1269365_1269845_-	nucleoside deoxyribosyltransferase	NA	A0A1D3SPR3	Enterococcus_phage	47.4	1.0e-32
ARE13533.1|1269828_1270383_-	nucleotide-binding protein	NA	A0A1D3SNB7	Enterococcus_phage	41.9	1.5e-27
ARE13534.1|1270385_1271036_-	Deoxynucleoside kinase	NA	C1KFI3	Lactobacillus_virus	49.1	6.3e-54
ARE13535.1|1271411_1272014_-	RecA protein	NA	A0A2D1GPX2	Mycobacterium_phage	40.4	6.7e-34
ARE13536.1|1272355_1273093_-	Glycerol uptake facilitator related permease (Major Intrinsic Protein Family)	NA	M1HQW3	Paramecium_bursaria_Chlorella_virus	28.8	2.2e-23
>prophage 4
CP015904	Lactococcus lactis subsp. lactis strain UC11 chromosome, complete genome	2381789	1542209	1552511	2381789	protease	Synechococcus_phage(33.33%)	9	NA	NA
ARE13770.1|1542209_1543766_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	45.6	8.0e-71
ARE13771.1|1543941_1544484_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	31.5	2.3e-09
ARE13772.1|1544620_1545034_-	CoA reductase	NA	NA	NA	NA	NA
ARE13773.1|1545003_1545657_-	UDP-glucose 4-epimerase	NA	NA	NA	NA	NA
ARE13774.1|1545788_1546319_+	Transcriptional regulator TetR family	NA	NA	NA	NA	NA
ARE13775.1|1546369_1547959_-	Multidrug resistance ABC transporter ATP-binding and permease protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	34.1	1.1e-11
ARE13776.1|1548125_1548674_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	31.7	7.2e-19
ARE13777.1|1548702_1549719_-	phosphoribosyl-aminoimidazole synthetase	NA	M4QRQ6	Synechococcus_phage	41.8	6.4e-61
ARE13778.1|1549907_1552511_-|protease	ATP-dependent Clp protease chaperonin ATPase ClpB	protease	K4FB40	Cronobacter_phage	33.1	1.1e-125
>prophage 5
CP015904	Lactococcus lactis subsp. lactis strain UC11 chromosome, complete genome	2381789	1643100	1655363	2381789	integrase	Lactococcus_phage(60.0%)	18	1638684:1638701	1651832:1651849
1638684:1638701	attL	TTATCCATGAGATCCATG	NA	NA	NA	NA
ARE13869.1|1643100_1643694_-	hypothetical protein	NA	A0A182BQ77	Lactococcus_phage	69.8	8.9e-31
ARE13870.1|1644102_1644552_-	hypothetical protein	NA	NA	NA	NA	NA
ARE13871.1|1644672_1644822_-	chain length regulator	NA	NA	NA	NA	NA
ARE13872.1|1644956_1645361_-	Protein-tyrosine-phosphatase	NA	A0A2H4PQT9	Staphylococcus_phage	50.4	2.2e-28
ARE13873.1|1645452_1646013_-	Cell wall-associated hydrolase	NA	Q38323	Lactococcus_phage	75.2	6.0e-53
ARE13874.1|1646015_1646372_+	hypothetical protein	NA	NA	NA	NA	NA
ARE13875.1|1646486_1646717_-	hypothetical protein	NA	Q77NT7	Lactococcus_phage	98.7	2.0e-34
ARE13876.1|1646848_1647103_+	hypothetical protein	NA	NA	NA	NA	NA
ARE13877.1|1647099_1647303_-	Phage protein	NA	NA	NA	NA	NA
ARE13878.1|1647457_1647817_+	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
ARE13879.1|1647782_1647941_-	hypothetical protein	NA	NA	NA	NA	NA
ARE13880.1|1648173_1648698_+	Transcriptional regulator xre family	NA	A0A1B1IMU5	Lactococcus_phage	82.4	5.4e-48
ARE13881.1|1648708_1649296_+	hypothetical protein	NA	Q9AZW4	Lactococcus_phage	83.9	1.5e-91
ARE13882.1|1649667_1650444_+	Phage-related protein	NA	NA	NA	NA	NA
ARE13883.1|1650573_1651713_+|integrase	phage integrase	integrase	A0A1B1IMP1	Lactococcus_phage	96.0	1.6e-206
ARE13884.1|1651818_1652892_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.3	2.0e-60
1651832:1651849	attR	TTATCCATGAGATCCATG	NA	NA	NA	NA
ARE13885.1|1652954_1653887_-	aspartate carbamoyltransferase	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	30.8	4.4e-24
ARE13886.1|1654070_1655363_-	Uracil permease	NA	Q9KX94	Enterobacteria_phage	35.9	1.6e-61
>prophage 6
CP015904	Lactococcus lactis subsp. lactis strain UC11 chromosome, complete genome	2381789	1695681	1705093	2381789		Lactococcus_phage(88.89%)	15	NA	NA
ARE13921.1|1695681_1696536_-	prophage protein	NA	Q8LTJ6	Lactococcus_phage	89.2	5.1e-104
ARE13922.1|1696537_1696990_-	prophage protein	NA	Q8LTJ7	Lactococcus_phage	93.5	2.3e-47
ARE13923.1|1697031_1697436_-	prophage protein	NA	A0A1P8BLK0	Lactococcus_phage	100.0	5.6e-69
ARE13924.1|1697511_1697889_-	prophage protein	NA	NA	NA	NA	NA
ARE13925.1|1697890_1698193_-	glycoside hydrolase family	NA	NA	NA	NA	NA
ARE13926.1|1698655_1698865_+	prophage protein	NA	NA	NA	NA	NA
ARE13927.1|1699014_1699200_-	prophage protein	NA	R9QMC5	Lactococcus_phage	83.6	4.0e-22
ARE13928.1|1699234_1699726_-	prophage protein	NA	NA	NA	NA	NA
ARE13929.1|1699722_1700016_-	prophage protein	NA	Q9AZV2	Lactococcus_phage	94.0	1.2e-28
ARE13930.1|1699996_1700278_-	prophage protein	NA	A0A1B1IM06	Lactococcus_phage	95.6	2.8e-43
ARE13931.1|1700261_1700492_-	prophage protein	NA	A0A1B1IMQ7	Lactococcus_phage	89.7	3.3e-34
ARE13932.1|1700798_1701491_+	Integrase	NA	A0A059NT56	Lactococcus_phage	97.0	3.5e-119
ARE13933.1|1701684_1702659_-	monosaccharide ABC transporter substrate-binding protein CUT2 family	NA	NA	NA	NA	NA
ARE13934.1|1702670_1703612_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
ARE13935.1|1703614_1705093_-	ribose ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.9	1.3e-14
>prophage 7
CP015904	Lactococcus lactis subsp. lactis strain UC11 chromosome, complete genome	2381789	1795425	1805283	2381789	tRNA	Prochlorococcus_phage(33.33%)	9	NA	NA
ARE14020.1|1795425_1796187_-	phosphate transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.0	1.5e-17
ARE14021.1|1796352_1797162_-	phosphate ABC transporter ATP-binding protein PhoT family	NA	W8CYL7	Bacillus_phage	26.5	7.0e-10
ARE14022.1|1797195_1798089_-	phosphate ABC transporter membrane protein 2 PhoT family	NA	NA	NA	NA	NA
ARE14023.1|1798088_1799012_-	phosphate transport system permease protein pstD	NA	NA	NA	NA	NA
ARE14024.1|1799132_1799957_-	phosphate ABC transporter substrate-binding protein PhoT family	NA	E3SNT9	Prochlorococcus_phage	29.4	1.8e-05
ARE14025.1|1800330_1801227_-	phosphate transport substrate binding protein pstF	NA	E3SM63	Prochlorococcus_phage	32.4	7.2e-08
ARE14026.1|1801503_1801971_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	56.6	2.7e-43
ARE14027.1|1802002_1802560_-	Lysophospholipase L1 related esterase	NA	NA	NA	NA	NA
ARE14028.1|1802664_1805283_-|tRNA	alanyl-tRNA synthetase	tRNA	A0A1V0SK38	Klosneuvirus	33.3	1.9e-64
>prophage 8
CP015904	Lactococcus lactis subsp. lactis strain UC11 chromosome, complete genome	2381789	2287840	2300464	2381789	head	Lactococcus_phage(78.57%)	20	NA	NA
ARE14487.1|2287840_2288035_+	prophage protein	NA	Q9AZJ4	Lactococcus_phage	96.9	5.1e-28
ARE14488.1|2288038_2288563_+	prophage protein	NA	Q9AZJ3	Lactococcus_phage	74.1	3.4e-66
ARE14489.1|2288559_2288712_+	prophage protein	NA	Q9AZH4	Lactococcus_phage	91.8	4.6e-16
ARE14490.1|2288708_2288990_+	prophage protein	NA	Q9AZJ1	Lactococcus_phage	94.6	5.1e-45
ARE14491.1|2289033_2289273_+	prophage protein	NA	Q9AZJ0	Lactococcus_phage	92.4	2.8e-36
ARE14492.1|2289520_2289832_+	prophage protein	NA	NA	NA	NA	NA
ARE14493.1|2289828_2290155_+	prophage protein	NA	Q9AZE7	Lactococcus_phage	68.5	1.5e-35
ARE14494.1|2290167_2290962_+	prophage protein	NA	Q9AZI6	Lactococcus_phage	92.8	2.5e-145
ARE14495.1|2290972_2292607_+	Phage DNA polymerase (ATPase domain)	NA	Q9AZI5	Lactococcus_phage	89.3	4.2e-288
ARE14496.1|2292961_2294191_+|head	major head protein precursor	head	E9LUQ3	Lactobacillus_phage	62.1	2.6e-141
ARE14497.1|2294209_2294830_+	prophage protein	NA	NA	NA	NA	NA
ARE14498.1|2294918_2295251_+	prophage protein	NA	Q9AZE0	Lactococcus_phage	85.2	5.5e-46
ARE14499.1|2295352_2295691_+	prophage protein	NA	Q9AZD9	Lactococcus_phage	70.3	7.8e-32
ARE14500.1|2295681_2296179_+	Endonuclease	NA	Q9AZT3	Lactococcus_phage	69.0	2.4e-61
ARE14501.1|2296869_2297070_+	hypothetical protein	NA	NA	NA	NA	NA
ARE14502.1|2297128_2298469_-	Glutamine synthetase	NA	A0A2P1EM84	Moumouvirus	23.7	1.8e-10
ARE14503.1|2298530_2298896_-	glutamine synthetase repressor	NA	NA	NA	NA	NA
ARE14504.1|2298996_2299434_-	protein tyrosine phosphatase	NA	NA	NA	NA	NA
ARE14505.1|2299577_2299742_-	hypothetical protein	NA	NA	NA	NA	NA
ARE14506.1|2299846_2300464_-	ABC-2 type transport system ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	3.4e-09
>prophage 1
CP016720	Lactococcus lactis subsp. lactis strain UC11 plasmid pUC11A, complete sequence	59284	2105	8735	59284		unidentified_phage(16.67%)	7	NA	NA
ARE12183.1|2105_2864_+	chromosome partitioning protein ParA	NA	H7BUL8	unidentified_phage	28.8	1.2e-16
ARE12184.1|2867_3596_+	chromosome segregation DNA-binding protein	NA	Q4ZC37	Staphylococcus_virus	27.2	2.1e-05
ARE12185.1|3736_4366_-	Transposase	NA	A0A1X9I6C6	Streptococcus_phage	82.3	3.6e-99
ARE12186.1|4641_5391_+	Nicotinamide mononucleotide transporter	NA	A0A2K9VCL6	Lactobacillus_phage	45.6	3.6e-53
ARE12187.1|5991_6234_-	Transposase	NA	NA	NA	NA	NA
ARE12188.1|6393_6954_+	resolvase	NA	A0A1J1J8Z4	Escherichia_phage	45.1	1.8e-33
ARE12189.1|7895_8735_-	Transposase	NA	U5P429	Shigella_phage	41.0	1.6e-46
>prophage 1
CP016721	Lactococcus lactis subsp. lactis strain UC11 plasmid pUC11B, complete sequence	49307	32072	48081	49307		Streptococcus_phage(50.0%)	16	NA	NA
ARE12281.1|32072_32432_+	transcriptional regulator ArsR family	NA	E4ZFI8	Streptococcus_phage	48.2	5.4e-23
ARE12282.1|34648_34939_+	Transposase	NA	NA	NA	NA	NA
ARE12283.1|34956_35796_+	Transposase	NA	U5P429	Shigella_phage	41.1	4.8e-46
ARE12284.1|35923_36574_+	ABC-type spermidine/putrescine transport system ATPase component	NA	G9BWD6	Planktothrix_phage	31.1	1.1e-21
ARE12285.1|36570_37326_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
ARE12286.1|37556_37979_-	mannose-6-phosphate isomerase	NA	Q2I8C5	Bacillus_phage	61.0	3.1e-38
ARE12287.1|38144_38531_+	Transposase	NA	A0A1X9I6E7	Streptococcus_phage	89.4	1.2e-60
ARE12288.1|38617_38824_+	Transposase	NA	A0A1X9I6C6	Streptococcus_phage	85.3	8.7e-26
ARE12289.1|38945_40877_-	hypothetical protein	NA	NA	NA	NA	NA
ARE12290.1|40863_41796_-	N6-adenine methyltransferase	NA	A0A1W6JN66	Lactococcus_phage	45.4	3.0e-65
ARE12291.1|41777_42974_-	Adenine-specific methyltransferase	NA	A0A2I4R668	Erysipelothrix_phage	28.8	2.4e-19
ARE12292.1|43059_43191_-	Transposase	NA	NA	NA	NA	NA
ARE12293.1|43274_43478_+	hypothetical protein	NA	A0A1S5SF22	Streptococcus_phage	42.9	5.2e-07
ARE12294.1|44306_46247_+	tetracycline resistance ribosomal protection protein Tet(S)	NA	A0A2K5B2A5	Erysipelothrix_phage	78.7	6.0e-294
ARE12295.1|47015_47375_-	hypothetical protein	NA	A0A1S5SFA6	Streptococcus_phage	60.2	2.3e-26
ARE12296.1|47901_48081_+	DNA-binding protein	NA	A0A1S5SEW0	Streptococcus_phage	60.3	2.1e-12
