assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_002073735.2_ASM207373v2	CP020424	Clostridioides difficile strain FDAARGOS_267 chromosome, complete genome	1	374552-375699	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no		csa3,DEDDh,cas14j,WYL,DinG,cas3,cas6,cas8b2,cas7,cas5,cas1,cas2,cas14k	Orphan	ATTTACATACCACTTAGTTAATATAAAAC,ATTTACATACCACTTAGTTAATATAAAAC,ATTTACATACCACTTAGTTAATATAAAAC	29,29,29	0	0	NA	NA	I-A:I-A:I-A	17,17,13	17	Orphan	csa3,DEDDh,cas14j,WYL,DinG,cas3,cas6,cas8b2,cas7,cas5,cas1,cas2,cas14k,c2c4_V-U1	NA|258aa|up_8|CP020424.2_364011_364785_-,NA|341aa|up_6|CP020424.2_365691_366714_-,NA|59aa|up_5|CP020424.2_367288_367465_+,NA|96aa|up_0|CP020424.2_373855_374143_-,NA	NA|242aa|up_9|CP020424.2_363174_363900_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|258aa|up_8|CP020424.2_364011_364785_-	NA	NA|296aa|up_7|CP020424.2_364790_365678_-	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component	NA|341aa|up_6|CP020424.2_365691_366714_-	NA	NA|59aa|up_5|CP020424.2_367288_367465_+	NA	NA|195aa|up_4|CP020424.2_368567_369152_-	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|615aa|up_3|CP020424.2_369473_371318_-	cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	NA|321aa|up_2|CP020424.2_371612_372575_-	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|184aa|up_1|CP020424.2_372765_373317_+	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|96aa|up_0|CP020424.2_373855_374143_-	NA	NA|59aa|down_0|CP020424.2_375949_376126_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|424aa|down_1|CP020424.2_376345_377617_+	cd01303, GDEase, Guanine deaminase (GDEase)	NA|106aa|down_2|CP020424.2_378200_378518_+	pfam06865, DUF1255, Protein of unknown function (DUF1255)	NA|786aa|down_3|CP020424.2_378603_380961_-	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7	NA|486aa|down_4|CP020424.2_381383_382841_-	PRK04366, PRK04366, aminomethyl-transferring glycine dehydrogenase subunit GcvPB	NA|825aa|down_5|CP020424.2_382840_385315_-	PRK00451, PRK00451, aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA|172aa|down_6|CP020424.2_386120_386636_-	pfam13787, HXXEE, Protein of unknown function with HXXEE motif	NA|577aa|down_7|CP020424.2_387160_388891_-	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|329aa|down_8|CP020424.2_389374_390361_+	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|266aa|down_9|CP020424.2_390670_391468_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]
GCA_002073735.2_ASM207373v2	CP020424	Clostridioides difficile strain FDAARGOS_267 chromosome, complete genome	2	549274-549765	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas14j	csa3,DEDDh,cas14j,WYL,DinG,cas3,cas6,cas8b2,cas7,cas5,cas1,cas2,cas14k	Unclear	ATTTACATTCCATATAGTTAATATAAAAC,ATTTACATTCCATATAGTTAATATAAAAC,ATTTACATTCCATATAGTTAATATAAAAC	29,29,29	0	0	NA	NA	I-A:I-A:I-A	7,7,6	7	TypeV	csa3,DEDDh,cas14j,WYL,DinG,cas3,cas6,cas8b2,cas7,cas5,cas1,cas2,cas14k,c2c4_V-U1	NA|323aa|up_5|CP020424.2_543383_544352_-,NA|91aa|up_0|CP020424.2_548833_549106_+,NA|49aa|down_4|CP020424.2_556208_556355_+,NA|190aa|down_7|CP020424.2_559304_559874_-,NA|50aa|down_9|CP020424.2_560788_560938_-	NA|182aa|up_9|CP020424.2_538658_539204_-	cd01046, Rubrerythrin_like, rubrerythrin-like, diiron-binding domain	NA|305aa|up_8|CP020424.2_539426_540341_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|294aa|up_7|CP020424.2_540756_541638_+	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins	NA|403aa|up_6|CP020424.2_541698_542907_-	PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional	NA|323aa|up_5|CP020424.2_543383_544352_-	NA	NA|147aa|up_4|CP020424.2_544524_544965_+	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|76aa|up_3|CP020424.2_545290_545518_+	pfam04023, FeoA, FeoA domain	NA|707aa|up_2|CP020424.2_545543_547664_+	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|273aa|up_1|CP020424.2_547796_548615_-	cd04782, HTH_BltR, Helix-Turn-Helix DNA binding domain of the BltR transcription regulator	NA|91aa|up_0|CP020424.2_548833_549106_+	NA	NA|698aa|down_0|CP020424.2_550423_552517_-	cd01948, EAL, EAL domain	NA|308aa|down_1|CP020424.2_553169_554093_+	pfam10728, DUF2520, Domain of unknown function (DUF2520)	NA|276aa|down_2|CP020424.2_554067_554895_+	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|283aa|down_3|CP020424.2_554913_555762_+	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|49aa|down_4|CP020424.2_556208_556355_+	NA	NA|305aa|down_5|CP020424.2_557186_558101_+	pfam11155, DUF2935, Domain of unknown function (DUF2935)	NA|216aa|down_6|CP020424.2_558490_559138_+	pfam02589, LUD_dom, LUD domain	NA|190aa|down_7|CP020424.2_559304_559874_-	NA	NA|300aa|down_8|CP020424.2_559878_560778_-	TIGR02163, Ferredoxin-type_protein_NapH_homolog, ferredoxin-type protein, NapH/MauN family	NA|50aa|down_9|CP020424.2_560788_560938_-	NA
GCA_002073735.2_ASM207373v2	CP020424	Clostridioides difficile strain FDAARGOS_267 chromosome, complete genome	3	660027-660976	3,3,3	CRISPRCasFinder,CRT,PILER-CR	no	DinG	csa3,DEDDh,cas14j,WYL,DinG,cas3,cas6,cas8b2,cas7,cas5,cas1,cas2,cas14k	Type IV-A	ATTTACATACCACTTAGTTAATATAAAAC,ATTTACATACCACTTAGTTAATATAAAAC,ATTTACATACCACTTAGTTAATATAAAAC	29,29,29	0	0	NA	NA	I-A:I-A:I-A	14,14,13	14	Orphan	csa3,DEDDh,cas14j,WYL,DinG,cas3,cas6,cas8b2,cas7,cas5,cas1,cas2,cas14k,c2c4_V-U1	NA|45aa|up_9|CP020424.2_649516_649651_-,NA|59aa|up_5|CP020424.2_652277_652454_+,NA|80aa|up_4|CP020424.2_652640_652880_-,NA|35aa|down_0|CP020424.2_661505_661610_-,NA|82aa|down_1|CP020424.2_662234_662480_+,NA|183aa|down_5|CP020424.2_667452_668001_+	NA|45aa|up_9|CP020424.2_649516_649651_-	NA	NA|122aa|up_8|CP020424.2_649881_650247_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|185aa|up_7|CP020424.2_650324_650879_+	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases	NA|225aa|up_6|CP020424.2_651098_651773_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|59aa|up_5|CP020424.2_652277_652454_+	NA	NA|80aa|up_4|CP020424.2_652640_652880_-	NA	NA|270aa|up_3|CP020424.2_653024_653834_-	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|745aa|up_2|CP020424.2_654617_656852_+	cd01948, EAL, EAL domain	NA|282aa|up_1|CP020424.2_656882_657728_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|578aa|up_0|CP020424.2_657967_659701_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|35aa|down_0|CP020424.2_661505_661610_-	NA	NA|82aa|down_1|CP020424.2_662234_662480_+	NA	NA|452aa|down_2|CP020424.2_664664_666020_+	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|223aa|down_3|CP020424.2_666137_666806_-	cd01994, Alpha_ANH_like_IV, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	NA|143aa|down_4|CP020424.2_666872_667301_-	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ	NA|183aa|down_5|CP020424.2_667452_668001_+	NA	NA|312aa|down_6|CP020424.2_668119_669055_+	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|315aa|down_7|CP020424.2_669325_670270_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|477aa|down_8|CP020424.2_670587_672018_+	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|195aa|down_9|CP020424.2_672217_672802_+	pfam00882, Zn_dep_PLPC, Zinc dependent phospholipase C
GCA_002073735.2_ASM207373v2	CP020424	Clostridioides difficile strain FDAARGOS_267 chromosome, complete genome	4	1897714-1898137	4,4,4	CRISPRCasFinder,CRT,PILER-CR	no		csa3,DEDDh,cas14j,WYL,DinG,cas3,cas6,cas8b2,cas7,cas5,cas1,cas2,cas14k	Orphan	ATTTACATTCCATATAGTTAATCTAAAAC,ATTTACATTCCATATAGTTAATCTAAAAC,ATTTACATTCCATATAGTTAATCTAAAAC	29,29,29	0	0	NA	NA	I-A:I-A:I-A	6,6,3	6	Orphan	csa3,DEDDh,cas14j,WYL,DinG,cas3,cas6,cas8b2,cas7,cas5,cas1,cas2,cas14k,c2c4_V-U1	NA|132aa|up_1|CP020424.2_1896425_1896821_-,NA|58aa|up_0|CP020424.2_1897376_1897550_-,NA|54aa|down_0|CP020424.2_1898874_1899036_-,NA|59aa|down_5|CP020424.2_1901693_1901870_-,NA|146aa|down_6|CP020424.2_1901862_1902300_-,NA|121aa|down_8|CP020424.2_1902717_1903080_-	NA|206aa|up_9|CP020424.2_1887842_1888460_-	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)	NA|350aa|up_8|CP020424.2_1888452_1889502_-	pfam04865, Baseplate_J, Baseplate J-like protein	NA|140aa|up_7|CP020424.2_1889502_1889922_-	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|87aa|up_6|CP020424.2_1889926_1890187_-	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|657aa|up_5|CP020424.2_1890200_1892171_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|230aa|up_4|CP020424.2_1892163_1892853_-	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|790aa|up_3|CP020424.2_1892868_1895238_-	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|257aa|up_2|CP020424.2_1895304_1896075_-	pfam09851, SHOCT, Short C-terminal domain	NA|132aa|up_1|CP020424.2_1896425_1896821_-	NA	NA|58aa|up_0|CP020424.2_1897376_1897550_-	NA	NA|54aa|down_0|CP020424.2_1898874_1899036_-	NA	NA|65aa|down_1|CP020424.2_1899182_1899377_-	TIGR02247, Hypothetical_protein_K09H11	NA|147aa|down_2|CP020424.2_1899376_1899817_-	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|159aa|down_3|CP020424.2_1899885_1900362_-	pfam09393, DUF2001, Phage tail tube protein	NA|437aa|down_4|CP020424.2_1900382_1901693_-	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|59aa|down_5|CP020424.2_1901693_1901870_-	NA	NA|146aa|down_6|CP020424.2_1901862_1902300_-	NA	NA|142aa|down_7|CP020424.2_1902292_1902718_-	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component	NA|121aa|down_8|CP020424.2_1902717_1903080_-	NA	NA|115aa|down_9|CP020424.2_1903079_1903424_-	cd08055, gp15, Head-Tail Connector Protein gp15 of Bacteriophage SPP1 and similar proteins
GCA_002073735.2_ASM207373v2	CP020424	Clostridioides difficile strain FDAARGOS_267 chromosome, complete genome	5	2048565-2048644	5	CRISPRCasFinder	no		csa3,DEDDh,cas14j,WYL,DinG,cas3,cas6,cas8b2,cas7,cas5,cas1,cas2,cas14k	Orphan	TTATAATATTATCCACATTATAAACA	26	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas14j,WYL,DinG,cas3,cas6,cas8b2,cas7,cas5,cas1,cas2,cas14k,c2c4_V-U1	NA|226aa|up_5|CP020424.2_2031067_2031745_-,NA|40aa|up_2|CP020424.2_2033925_2034045_-,NA	NA|186aa|up_9|CP020424.2_2028391_2028949_-	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase	NA|251aa|up_8|CP020424.2_2028949_2029702_-	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	NA|360aa|up_7|CP020424.2_2029701_2030781_-	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated	NA|72aa|up_6|CP020424.2_2030809_2031025_-	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|226aa|up_5|CP020424.2_2031067_2031745_-	NA	NA|360aa|up_4|CP020424.2_2031734_2032814_-	PRK03011, PRK03011, butyrate kinase; Provisional	NA|301aa|up_3|CP020424.2_2032835_2033738_-	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|40aa|up_2|CP020424.2_2033925_2034045_-	NA	NA|394aa|up_1|CP020424.2_2034041_2035223_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|280aa|up_0|CP020424.2_2035219_2036059_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|180aa|down_0|CP020424.2_2049124_2049664_-	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|784aa|down_1|CP020424.2_2049685_2052037_-	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|395aa|down_2|CP020424.2_2052409_2053594_+	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|235aa|down_3|CP020424.2_2066124_2066829_-	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|131aa|down_4|CP020424.2_2067335_2067728_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|144aa|down_5|CP020424.2_2067756_2068188_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|244aa|down_6|CP020424.2_2068307_2069039_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|268aa|down_7|CP020424.2_2069070_2069874_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|289aa|down_8|CP020424.2_2069867_2070734_-	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|278aa|down_9|CP020424.2_2070721_2071555_-	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase
GCA_002073735.2_ASM207373v2	CP020424	Clostridioides difficile strain FDAARGOS_267 chromosome, complete genome	6	2064038-2064126	6	CRISPRCasFinder	no		csa3,DEDDh,cas14j,WYL,DinG,cas3,cas6,cas8b2,cas7,cas5,cas1,cas2,cas14k	Orphan	ATTCCGTTGCTTAAAGTGCTAACGCAC	27	1	5	2064065-2064099|2064065-2064099|2064065-2064099|2064065-2064099|2064065-2064099	CP020424.2_1040691-1040725|CP020424.2_2046570-2046604|CP020424.2_2163127-2163161|CP020424.2_2177464-2177498|CP020424.2_2478102-2478068	NA	1	1	Orphan	csa3,DEDDh,cas14j,WYL,DinG,cas3,cas6,cas8b2,cas7,cas5,cas1,cas2,cas14k,c2c4_V-U1	NA|226aa|up_8|CP020424.2_2031067_2031745_-,NA|40aa|up_5|CP020424.2_2033925_2034045_-,NA	NA|72aa|up_9|CP020424.2_2030809_2031025_-	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|226aa|up_8|CP020424.2_2031067_2031745_-	NA	NA|360aa|up_7|CP020424.2_2031734_2032814_-	PRK03011, PRK03011, butyrate kinase; Provisional	NA|301aa|up_6|CP020424.2_2032835_2033738_-	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|40aa|up_5|CP020424.2_2033925_2034045_-	NA	NA|394aa|up_4|CP020424.2_2034041_2035223_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|280aa|up_3|CP020424.2_2035219_2036059_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|180aa|up_2|CP020424.2_2049124_2049664_-	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|784aa|up_1|CP020424.2_2049685_2052037_-	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|395aa|up_0|CP020424.2_2052409_2053594_+	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|235aa|down_0|CP020424.2_2066124_2066829_-	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|131aa|down_1|CP020424.2_2067335_2067728_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|144aa|down_2|CP020424.2_2067756_2068188_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|244aa|down_3|CP020424.2_2068307_2069039_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|268aa|down_4|CP020424.2_2069070_2069874_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|289aa|down_5|CP020424.2_2069867_2070734_-	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|278aa|down_6|CP020424.2_2070721_2071555_-	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|114aa|down_7|CP020424.2_2071674_2072016_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|316aa|down_8|CP020424.2_2072036_2072984_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|208aa|down_9|CP020424.2_2073061_2073685_-	PRK05327, rpsD, 30S ribosomal protein S4; Validated
GCA_002073735.2_ASM207373v2	CP020424	Clostridioides difficile strain FDAARGOS_267 chromosome, complete genome	7	3041318-3042060	5,7,5,8	PILER-CR,CRISPRCasFinder,CRT,CRISPRCasFinder	no	WYL,cas6,cas8b2,cas7,cas5,cas3,cas1,cas2	csa3,DEDDh,cas14j,WYL,DinG,cas3,cas6,cas8b2,cas7,cas5,cas1,cas2,cas14k	Unclear	ATTTACATACCACTTAGTTAATATAAAAC,GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAATN,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,30,29	0	0	NA	NA	I-A:I-A:I-A:I-A	8,9,11,9	11	Unclear	csa3,DEDDh,cas14j,WYL,DinG,cas3,cas6,cas8b2,cas7,cas5,cas1,cas2,cas14k,c2c4_V-U1	NA,NA|260aa|down_1|CP020424.2_3043003_3043783_-,NA|67aa|down_7|CP020424.2_3048965_3049166_-	NA|249aa|up_9|CP020424.2_3028808_3029555_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|639aa|up_8|CP020424.2_3029554_3031471_+	pfam02687, FtsX, FtsX-like permease family	WYL|306aa|up_7|CP020424.2_3031749_3032667_+	pfam13280, WYL, WYL domain	cas6|246aa|up_6|CP020424.2_3032744_3033482_+	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	cas8b2|626aa|up_5|CP020424.2_3033487_3035365_+	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|305aa|up_4|CP020424.2_3035366_3036281_+	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas5|234aa|up_3|CP020424.2_3036282_3036984_+	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|774aa|up_2|CP020424.2_3036994_3039316_+	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas1|327aa|up_1|CP020424.2_3039884_3040865_+	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas2|89aa|up_0|CP020424.2_3040867_3041134_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|143aa|down_0|CP020424.2_3042120_3042549_+	PRK10562, PRK10562, putative acetyltransferase; Provisional	NA|260aa|down_1|CP020424.2_3043003_3043783_-	NA	NA|182aa|down_2|CP020424.2_3044106_3044652_+	pfam02632, BioY, BioY family	NA|379aa|down_3|CP020424.2_3044683_3045820_+	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|464aa|down_4|CP020424.2_3045823_3047215_+	cd17633, AFD_YhfT-like, fatty acid-CoA ligase VraA	NA|292aa|down_5|CP020424.2_3047290_3048166_+	PRK08306, PRK08306, dipicolinate synthase subunit DpsA	NA|197aa|down_6|CP020424.2_3048168_3048759_+	PRK08305, spoVFB, dipicolinate synthase subunit B; Reviewed	NA|67aa|down_7|CP020424.2_3048965_3049166_-	NA	NA|885aa|down_8|CP020424.2_3049669_3052324_+	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|740aa|down_9|CP020424.2_3052599_3054819_+	cd01948, EAL, EAL domain
GCA_002073735.2_ASM207373v2	CP020424	Clostridioides difficile strain FDAARGOS_267 chromosome, complete genome	12	3539206-3539767	6,13,6	PILER-CR,CRISPRCasFinder,CRT	no		csa3,DEDDh,cas14j,WYL,DinG,cas3,cas6,cas8b2,cas7,cas5,cas1,cas2,cas14k	Orphan	ATTTACATTCCATATAGTTAATATAAAAC,GTTTTATATTAACTATATGGAATGTAAAT,GTTTTATATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	8,8,8	8	Orphan	csa3,DEDDh,cas14j,WYL,DinG,cas3,cas6,cas8b2,cas7,cas5,cas1,cas2,cas14k,c2c4_V-U1	NA|53aa|up_0|CP020424.2_3538761_3538920_+,NA	NA|668aa|up_9|CP020424.2_3526148_3528152_-	PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme	NA|213aa|up_8|CP020424.2_3528304_3528943_-	PRK00117, recX, recombination regulator RecX; Reviewed	NA|230aa|up_7|CP020424.2_3529218_3529908_+	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase	NA|191aa|up_6|CP020424.2_3529908_3530481_+	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|117aa|up_5|CP020424.2_3530597_3530948_+	pfam02410, RsfS, Ribosomal silencing factor during starvation	NA|807aa|up_4|CP020424.2_3531301_3533722_+	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|223aa|up_3|CP020424.2_3534557_3535226_+	pfam04892, VanZ, VanZ like family	NA|91aa|up_2|CP020424.2_3535708_3535981_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|457aa|up_1|CP020424.2_3537032_3538403_+	NF033435, S-layer_Clost, S-layer protein SlpA	NA|53aa|up_0|CP020424.2_3538761_3538920_+	NA	NA|332aa|down_0|CP020424.2_3540803_3541799_-	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase	NA|543aa|down_1|CP020424.2_3541919_3543548_-	TIGR03801, For_A_Pyridoxal-5-_Phosphate, aspartate 4-decarboxylase	NA|406aa|down_2|CP020424.2_3544206_3545424_+	PRK08198, PRK08198, threonine dehydratase; Provisional	NA|127aa|down_3|CP020424.2_3545518_3545899_+	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase	NA|161aa|down_4|CP020424.2_3546182_3546665_+	pfam00358, PTS_EIIA_1, phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1	NA|272aa|down_5|CP020424.2_3546685_3547501_+	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|517aa|down_6|CP020424.2_3547553_3549104_+	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component	NA|451aa|down_7|CP020424.2_3549200_3550553_+	cd05298, GH4_GlvA_pagL_like, Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases	NA|253aa|down_8|CP020424.2_3550683_3551442_+	COG2169, Ada, Adenosine deaminase [Nucleotide transport and metabolism]	NA|240aa|down_9|CP020424.2_3551488_3552208_+	pfam01841, Transglut_core, Transglutaminase-like superfamily
GCA_002073735.2_ASM207373v2	CP020424	Clostridioides difficile strain FDAARGOS_267 chromosome, complete genome	13	3786440-3786926	7,14,7	PILER-CR,CRISPRCasFinder,CRT	no		csa3,DEDDh,cas14j,WYL,DinG,cas3,cas6,cas8b2,cas7,cas5,cas1,cas2,cas14k	Orphan	TTTACATTCCATATAGTTAATCTAAAAC,GTTTTAGATTAACTATATGGAATGTAAAA,GTTTTAGATTAACTATATGGAATGTAAA	28,29,28	0	0	NA	NA	NA:NA:NA	6,7,7	7	Orphan	csa3,DEDDh,cas14j,WYL,DinG,cas3,cas6,cas8b2,cas7,cas5,cas1,cas2,cas14k,c2c4_V-U1	NA|59aa|up_8|CP020424.2_3778194_3778371_-,NA|85aa|up_3|CP020424.2_3784016_3784271_+,NA|111aa|up_2|CP020424.2_3784297_3784630_+,NA|51aa|up_1|CP020424.2_3784903_3785056_+,NA|132aa|down_1|CP020424.2_3787807_3788203_+,NA|54aa|down_2|CP020424.2_3788254_3788416_+,NA|155aa|down_3|CP020424.2_3788743_3789208_-,NA|106aa|down_4|CP020424.2_3789343_3789661_-,NA|99aa|down_5|CP020424.2_3789943_3790240_-,NA|138aa|down_6|CP020424.2_3790258_3790672_-	NA|67aa|up_9|CP020424.2_3777769_3777970_-	COG1278, CspC, Cold shock proteins [Transcription]	NA|59aa|up_8|CP020424.2_3778194_3778371_-	NA	NA|67aa|up_7|CP020424.2_3778693_3778894_-	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|117aa|up_6|CP020424.2_3778895_3779246_-	pfam12676, DUF3796, Protein of unknown function (DUF3796)	NA|163aa|up_5|CP020424.2_3780632_3781121_-	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]	NA|125aa|up_4|CP020424.2_3781924_3782299_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|85aa|up_3|CP020424.2_3784016_3784271_+	NA	NA|111aa|up_2|CP020424.2_3784297_3784630_+	NA	NA|51aa|up_1|CP020424.2_3784903_3785056_+	NA	NA|295aa|up_0|CP020424.2_3785249_3786134_+	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|122aa|down_0|CP020424.2_3787388_3787754_+	smart01040, Bro-N, BRO family, N-terminal domain	NA|132aa|down_1|CP020424.2_3787807_3788203_+	NA	NA|54aa|down_2|CP020424.2_3788254_3788416_+	NA	NA|155aa|down_3|CP020424.2_3788743_3789208_-	NA	NA|106aa|down_4|CP020424.2_3789343_3789661_-	NA	NA|99aa|down_5|CP020424.2_3789943_3790240_-	NA	NA|138aa|down_6|CP020424.2_3790258_3790672_-	NA	NA|78aa|down_7|CP020424.2_3790655_3790889_-	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|125aa|down_8|CP020424.2_3791107_3791482_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|231aa|down_9|CP020424.2_3792093_3792786_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
