The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP020421	Neisseria meningitidis strain FDAARGOS_210 chromosome, complete genome	2273276	438726	504338	2273276	transposase,protease	Staphylococcus_phage(50.0%)	58	NA	NA
ARC07159.1|438726_439692_-|transposase	IS30 family transposase IS1655	transposase	W5R8L2	Staphylococcus_phage	35.5	8.0e-37
ARC07160.1|440270_447815_+	hemagglutinin	NA	NA	NA	NA	NA
ARC07161.1|447818_448235_+	hypothetical protein	NA	NA	NA	NA	NA
ARC07162.1|448303_449317_+	hemagglutinin	NA	NA	NA	NA	NA
ARC08876.1|449297_449597_+	hypothetical protein	NA	NA	NA	NA	NA
ARC07163.1|449608_449923_+	hypothetical protein	NA	NA	NA	NA	NA
ARC07164.1|450088_450547_+	toxin-activating lysine-acyltransferase HlyC	NA	NA	NA	NA	NA
ARC07165.1|450601_452389_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA	NA
ARC07166.1|452713_453967_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
ARC07167.1|454129_454636_-	hypothetical protein	NA	NA	NA	NA	NA
ARC08877.1|454996_456361_-	Fic family protein	NA	A0A1V0E025	Clostridioides_phage	29.7	2.2e-24
ARC07168.1|456543_456756_-	hypothetical protein	NA	NA	NA	NA	NA
ARC07169.1|456781_457144_+|transposase	transposase	transposase	NA	NA	NA	NA
ARC07170.1|457589_457784_-	hypothetical protein	NA	NA	NA	NA	NA
ARC07171.1|458091_458436_-	hypothetical protein	NA	NA	NA	NA	NA
AVI44568.1|458581_458683_+	hypothetical protein	NA	NA	NA	NA	NA
ARC07172.1|458679_459117_-	VapD	NA	NA	NA	NA	NA
ARC07174.1|460932_461121_-	hemagglutinin	NA	NA	NA	NA	NA
ARC07175.1|461265_462216_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
ARC08879.1|462384_462576_-	hypothetical protein	NA	NA	NA	NA	NA
ARC07176.1|462841_463927_-	hypothetical protein	NA	NA	NA	NA	NA
ARC07177.1|463936_464227_-	DUF2523 domain-containing protein	NA	NA	NA	NA	NA
ARC07178.1|464227_465733_-	T cell/B cell stimulating protein TspB	NA	NA	NA	NA	NA
ARC07179.1|465773_466064_-	hypothetical protein	NA	NA	NA	NA	NA
ARC07180.1|466191_466470_-	hypothetical protein	NA	NA	NA	NA	NA
ARC07181.1|466476_466761_-	hypothetical protein	NA	NA	NA	NA	NA
ARC07182.1|466768_466966_-	hypothetical protein	NA	NA	NA	NA	NA
ARC07183.1|466970_467261_-	hypothetical protein	NA	NA	NA	NA	NA
ARC07184.1|467305_468340_-	replication protein	NA	S0F3I3	Stenotrophomonas_phage	31.8	3.1e-23
AVI44569.1|468732_469299_-	hypothetical protein	NA	NA	NA	NA	NA
ARC07186.1|469813_471241_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
ARC07187.1|471309_472713_+	TolC family protein	NA	NA	NA	NA	NA
ARC07188.2|472876_473664_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
ARC07189.1|473956_476170_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	NA	NA	NA	NA
ARC07190.1|476312_476954_+	glutaredoxin, GrxB family	NA	NA	NA	NA	NA
ARC07191.2|477290_477797_+	hypothetical protein	NA	NA	NA	NA	NA
ARC07192.1|477932_478733_+	cation transporter	NA	NA	NA	NA	NA
ARC07193.1|478651_478981_-	site-specific DNA-methyltransferase	NA	NA	NA	NA	NA
ARC07194.1|479071_479290_+	hypothetical protein	NA	NA	NA	NA	NA
ARC07195.1|479184_479823_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
ARC07196.1|480077_480920_+	protein TonB	NA	NA	NA	NA	NA
ARC07197.1|480985_481648_+	biopolymer transporter ExbB	NA	NA	NA	NA	NA
ARC07198.1|481650_482085_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
ARC08881.2|482771_483239_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
ARC07200.1|485326_486772_+	cytochrome-c oxidase, cbb3-type subunit I	NA	NA	NA	NA	NA
ARC07201.1|486798_487410_+	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
ARC07202.1|487414_487585_+	CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone	NA	NA	NA	NA	NA
ARC07203.1|487608_488706_+	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
ARC07204.1|488745_488940_+	cytochrome c5 family protein	NA	NA	NA	NA	NA
ARC07205.1|489141_490551_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
ARC07206.2|490652_493853_+	exodeoxyribonuclease V subunit gamma	NA	NA	NA	NA	NA
ARC07207.1|493922_495491_-	aminobenzoyl-glutamate transporter	NA	NA	NA	NA	NA
ARC07208.1|495779_496037_+	hypothetical protein	NA	NA	NA	NA	NA
ARC07209.1|496315_496948_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
ARC07210.1|497351_498590_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
ARC07211.1|498601_501805_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
ARC07212.1|501859_503263_+	multidrug transporter	NA	NA	NA	NA	NA
ARC07213.1|503372_504338_+|transposase	IS30 family transposase IS1655	transposase	W5R8L2	Staphylococcus_phage	35.5	8.0e-37
>prophage 2
CP020421	Neisseria meningitidis strain FDAARGOS_210 chromosome, complete genome	2273276	984587	993801	2273276		Burkholderia_phage(28.57%)	9	NA	NA
ARC07631.1|984587_986867_+	ribonucleoside-diphosphate reductase subunit alpha	NA	I3UMG3	Colwellia_phage	67.6	1.2e-309
ARC07632.1|986924_987938_+	DNA (cytosine-5-)-methyltransferase	NA	E5E3X6	Burkholderia_phage	52.8	8.0e-88
ARC07633.1|987930_989118_+	type II restriction enzyme	NA	E5E3X4	Burkholderia_phage	38.9	6.6e-33
ARC07634.1|989178_990312_+	ribonucleotide-diphosphate reductase subunit beta	NA	W6AT53	Erwinia_phage	75.1	1.4e-165
ARC07635.1|990546_990837_+	2Fe-2S ferredoxin-like protein	NA	G9IAA2	Pseudomonas_phage	54.5	7.5e-15
ARC07636.1|990877_991156_-	cell division protein FtsB	NA	NA	NA	NA	NA
ARC07637.1|991169_992456_-	enolase	NA	A0A1X9I5Z8	Streptococcus_phage	62.3	2.5e-147
ARC07638.2|992503_992944_-	DUF4149 domain-containing protein	NA	NA	NA	NA	NA
ARC07639.1|992958_993801_-	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	41.6	5.7e-47
>prophage 3
CP020421	Neisseria meningitidis strain FDAARGOS_210 chromosome, complete genome	2273276	1144365	1185258	2273276	tail,head,transposase,tRNA,plate	Mannheimia_phage(34.62%)	52	NA	NA
ARC07775.1|1144365_1145646_-|tRNA	tRNA(Ile)-lysidine synthetase	tRNA	NA	NA	NA	NA
ARC07776.1|1145743_1146703_-	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA	NA
ARC07777.1|1146914_1147316_+	RNA-binding S4 domain-containing protein	NA	NA	NA	NA	NA
ARC07778.1|1147383_1147581_-	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
ARC07779.1|1147577_1147784_-	hypothetical protein	NA	NA	NA	NA	NA
ARC07780.1|1147793_1148348_+	amino acid permease	NA	NA	NA	NA	NA
ARC07781.1|1148352_1148496_-	hypothetical protein	NA	NA	NA	NA	NA
AVI44686.1|1148561_1148660_+	hypothetical protein	NA	NA	NA	NA	NA
ARC07782.1|1148770_1149112_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
ARC07783.1|1149166_1149928_-	hypothetical protein	NA	NA	NA	NA	NA
ARC08933.1|1149964_1150621_-	hypothetical protein	NA	NA	NA	NA	NA
ARC07784.1|1150697_1152560_-	molecular chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.2	2.8e-107
ARC07785.1|1152730_1153603_+	squalene synthase HpnD	NA	NA	NA	NA	NA
ARC07786.1|1153764_1153971_+	hypothetical protein	NA	NA	NA	NA	NA
ARC07787.1|1154000_1155314_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
ARC07788.1|1155396_1156116_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
ARC07789.1|1156280_1156952_+	hypothetical protein	NA	NA	NA	NA	NA
ARC07790.1|1156958_1157330_+	DUF4810 domain-containing protein	NA	NA	NA	NA	NA
ARC07791.1|1157326_1157974_+	hypothetical protein	NA	NA	NA	NA	NA
ARC07792.1|1158013_1158211_+	hypothetical protein	NA	NA	NA	NA	NA
AVI44608.1|1158415_1159558_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AVI44609.1|1159667_1159877_-	hypothetical protein	NA	A0A0R6PHB4	Moraxella_phage	48.2	4.1e-07
ARC07793.1|1159873_1160170_-	DNA helicase UvrD	NA	A0A0M3LNN9	Mannheimia_phage	60.2	1.2e-23
ARC07794.1|1160148_1160754_-	hypothetical protein	NA	Q7Y5S1	Haemophilus_phage	42.3	2.0e-14
ARC07795.1|1160833_1161121_+	hypothetical protein	NA	NA	NA	NA	NA
ARC07796.1|1161092_1161395_+	hypothetical protein	NA	A0A2H4J5Y5	uncultured_Caudovirales_phage	37.8	1.1e-05
AVI44687.1|1161621_1162104_-	hypothetical protein	NA	NA	NA	NA	NA
ARC07797.1|1162453_1164427_-|tail	phage tail protein	tail	Q94MY0	Haemophilus_virus	56.9	4.0e-136
ARC07798.1|1164437_1164998_-	DUF2313 domain-containing protein	NA	A0A0M3LQE1	Mannheimia_phage	39.2	3.1e-25
ARC07800.1|1165604_1166048_-	hypothetical protein	NA	A0A0M3LQN4	Mannheimia_phage	55.3	3.1e-36
ARC07801.1|1166061_1166409_-	hypothetical protein	NA	A0A0M3LQK5	Mannheimia_phage	59.5	4.7e-32
ARC07802.1|1166509_1167178_-|plate	phage baseplate assembly protein V	plate	A0A0M3LPA3	Mannheimia_phage	52.1	1.8e-59
ARC07803.1|1167174_1168320_-|tail	phage tail protein	tail	F6MIL3	Haemophilus_phage	57.3	1.6e-113
ARC07804.1|1168309_1169641_-	phage morphogenesis protein	NA	A0A0M3LQ21	Mannheimia_phage	35.5	1.2e-64
ARC08934.1|1169640_1171797_-	PRTRC system protein F	NA	A0A0M3LPB6	Mannheimia_phage	29.8	3.2e-38
ARC07805.1|1171966_1172569_+	hypothetical protein	NA	NA	NA	NA	NA
ARC07806.1|1172611_1172845_-	hypothetical protein	NA	NA	NA	NA	NA
ARC07807.1|1172819_1173185_-	hypothetical protein	NA	F6MIK9	Haemophilus_phage	37.7	5.3e-10
ARC07808.1|1173188_1173566_-|tail	phage tail protein	tail	A0A0M3LRV6	Mannheimia_phage	50.8	5.3e-29
ARC08935.1|1173630_1175040_-|tail	phage tail protein	tail	B7SDP8	Haemophilus_phage	52.8	2.5e-124
ARC07809.1|1175042_1175240_-	DUF2635 domain-containing protein	NA	NA	NA	NA	NA
ARC07810.1|1175236_1175887_-	DUF1834 domain-containing protein	NA	B7SDP5	Haemophilus_phage	38.4	5.2e-32
ARC07811.1|1175876_1176299_-	DUF1320 domain-containing protein	NA	A0A2P9JZJ4	Alteromonadaceae_phage	40.7	6.4e-15
ARC07812.1|1176298_1176781_-	hypothetical protein	NA	NA	NA	NA	NA
ARC07813.1|1176808_1177774_+|transposase	IS30-like element IS1655 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.5	1.0e-36
ARC07814.1|1177861_1178923_-	hypothetical protein	NA	A0A2D1GNS3	Pseudomonas_phage	43.0	9.6e-60
AVI44610.1|1179153_1179570_-	phage virion morphogenesis protein	NA	B7SDN8	Haemophilus_phage	48.2	2.4e-30
ARC07815.1|1179679_1180975_-|head	phage head morphogenesis protein	head	B7SDN5	Haemophilus_phage	50.1	9.8e-115
ARC07816.1|1180961_1182530_-	DUF935 domain-containing protein	NA	A0A0M3LRU4	Mannheimia_phage	61.6	6.2e-188
ARC08936.1|1182529_1184080_-	hypothetical protein	NA	B7SDN0	Haemophilus_phage	70.8	8.7e-219
ARC07817.1|1184164_1184755_+	hypothetical protein	NA	A0A127KNL4	Pseudomonas_phage	36.3	8.1e-08
ARC07818.1|1184751_1185258_-	DUF1804 domain-containing protein	NA	I6PBD1	Pseudomonas_phage	51.2	2.4e-40
>prophage 4
CP020421	Neisseria meningitidis strain FDAARGOS_210 chromosome, complete genome	2273276	1412827	1462201	2273276	transposase,protease,tRNA	Staphylococcus_phage(20.0%)	52	NA	NA
ARC08053.2|1412827_1414123_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
ARC08054.1|1414123_1414753_+	hypothetical protein	NA	NA	NA	NA	NA
ARC08055.1|1414902_1416360_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
ARC08056.1|1416390_1417290_+	recombination-associated protein RdgC	NA	L7TP07	Pseudomonas_virus	35.5	3.9e-46
ARC08057.1|1417341_1417758_+	hypothetical protein	NA	NA	NA	NA	NA
ARC08058.1|1417823_1418390_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	71.1	1.6e-74
ARC08059.1|1418453_1419158_-	DUF541 domain-containing protein	NA	NA	NA	NA	NA
ARC08960.1|1420045_1420654_+	glycosyl transferase	NA	NA	NA	NA	NA
ARC08060.1|1420792_1421746_+	PhoH family protein	NA	H6X2N1	Pseudomonas_phage	47.3	2.1e-45
ARC08061.1|1421850_1422174_-	hypothetical protein	NA	NA	NA	NA	NA
ARC08062.1|1422346_1423708_-	polynucleotide adenylyltransferase PcnB	NA	H7BUW3	unidentified_phage	37.7	6.4e-24
ARC08063.1|1423777_1423921_+	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
ARC08064.1|1424008_1425709_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	31.9	4.0e-68
ARC08065.1|1425777_1426494_-	hypothetical protein	NA	NA	NA	NA	NA
ARC08066.2|1426540_1427047_-	hypothetical protein	NA	NA	NA	NA	NA
ARC08067.1|1427200_1428532_+|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
AVI44623.1|1428543_1428867_+	hypothetical protein	NA	NA	NA	NA	NA
ARC08068.1|1428829_1429033_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	78.8	3.4e-22
ARC08962.1|1429275_1429578_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	NA	NA	NA	NA
ARC08069.1|1429579_1431889_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.0	8.3e-165
ARC08071.1|1434767_1435733_+|transposase	IS30-like element IS1655 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.5	8.0e-37
ARC08072.1|1435721_1436108_-	type I restriction endonuclease	NA	NA	NA	NA	NA
ARC08073.1|1436104_1437247_-	anticodon nuclease	NA	NA	NA	NA	NA
ARC08963.2|1437304_1437910_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
ARC08074.1|1437965_1438454_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
ARC08075.1|1438619_1439630_-	cell filamentation protein Fic	NA	Q9JMN3	Wolbachia_phage	40.9	6.4e-53
ARC08076.1|1439626_1441171_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	41.7	7.3e-101
ARC08077.1|1441243_1442248_-	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SL51	Synechococcus_phage	33.0	1.9e-25
ARC08078.2|1442288_1443407_-	restriction endonuclease	NA	NA	NA	NA	NA
ARC08079.1|1443408_1444644_-	DNA (cytosine-5-)-methyltransferase	NA	Q6DMX0	Streptococcus_phage	31.2	2.9e-47
ARC08080.1|1444680_1445652_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	M4QF80	Synechococcus_phage	29.6	6.6e-15
ARC08081.1|1445706_1446447_-	orotidine-5'-phosphate decarboxylase	NA	NA	NA	NA	NA
ARC08082.1|1446972_1447620_-	adenylate kinase	NA	NA	NA	NA	NA
AVI44624.1|1447721_1447838_+	heat-shock protein HtpX	NA	NA	NA	NA	NA
ARC08083.2|1447834_1448674_+|protease	protease HtpX	protease	NA	NA	NA	NA
ARC08084.1|1448974_1449535_-	hypothetical protein	NA	NA	NA	NA	NA
ARC08085.1|1449452_1449641_-	hypothetical protein	NA	NA	NA	NA	NA
ARC08086.1|1449648_1450041_-	DUF723 domain-containing protein	NA	NA	NA	NA	NA
ARC08087.1|1450248_1450641_-	DUF723 domain-containing protein	NA	NA	NA	NA	NA
ARC08088.1|1450757_1451168_-	DUF723 domain-containing protein	NA	NA	NA	NA	NA
ARC08089.2|1451181_1451619_-	DUF723 domain-containing protein	NA	NA	NA	NA	NA
ARC08091.1|1452030_1453335_-	adenylosuccinate synthase	NA	A0A291AUF9	Pandoravirus	30.9	1.4e-57
ARC08092.1|1453431_1454583_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
ARC08964.1|1454556_1454751_+	transcriptional regulator	NA	NA	NA	NA	NA
ARC08093.1|1454916_1456296_+	multidrug efflux MATE transporter NorM	NA	NA	NA	NA	NA
ARC08094.1|1456339_1457380_+	UDP-N-acetylenolpyruvoylglucosamine reductase	NA	NA	NA	NA	NA
ARC08095.1|1457391_1458042_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
ARC08096.1|1458096_1458894_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
ARC08097.1|1458944_1459511_+	SCP2 domain-containing protein	NA	NA	NA	NA	NA
ARC08098.1|1459530_1460421_+	NAD kinase	NA	NA	NA	NA	NA
ARC08099.1|1460445_1461204_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
ARC08100.1|1461235_1462201_-|transposase	IS30-like element IS1655 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.1	4.0e-36
