The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP020406	Staphylococcus lugdunensis strain FDAARGOS_222 chromosome, complete genome	2540323	833246	863499	2540323	tRNA	Staphylococcus_phage(96.15%)	31	NA	NA
ARB77496.1|833246_834641_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	62.3	1.5e-169
ARB77497.1|834647_835652_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	51.7	2.3e-95
ARB77498.1|835648_835906_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	70.4	1.2e-29
ARB77499.1|835972_836446_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	60.6	2.6e-49
ARB77500.1|836426_837200_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	69.4	5.0e-98
ARB77501.1|837263_838856_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	86.0	8.8e-275
ARB77502.1|839227_840424_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	87.4	1.7e-198
ARB77503.1|840522_841431_+	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	76.6	1.3e-102
ARB77504.1|841545_842379_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	72.6	2.1e-118
ARB77505.1|842563_842917_-	fluoride efflux transporter CrcB	NA	NA	NA	NA	NA
ARB77506.1|842913_843279_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	62.0	2.0e-33
ARB77507.1|843347_843653_-	hypothetical protein	NA	NA	NA	NA	NA
ARB77508.1|843909_844623_+	transaldolase	NA	M1PR54	Cyanophage	36.3	1.1e-19
ARB77509.1|844753_845206_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	43.6	1.6e-16
ARB77510.1|845648_846119_-	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	45.5	1.6e-27
ARB77511.1|846316_846541_+	hypothetical protein	NA	NA	NA	NA	NA
ARB77512.1|846742_847597_+	autolysin	NA	A0A1W6JNR1	Staphylococcus_phage	42.1	7.5e-39
ARB77513.1|847980_849480_+	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	77.2	9.9e-18
ARB79014.1|849791_850898_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	62.9	4.4e-124
ARB77514.1|850905_851538_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	70.5	1.4e-77
ARB77515.1|851550_852732_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	75.1	8.5e-174
ARB77516.1|852744_853203_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	80.9	8.6e-58
ARB77517.1|853280_854267_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	72.6	7.2e-134
ARB77518.1|854483_855317_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
ARB77519.1|855810_856212_+	transcriptional regulator	NA	NA	NA	NA	NA
ARB77520.1|856262_856826_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	67.4	3.5e-69
ARB77521.1|856822_857776_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	86.1	3.2e-70
ARB77522.1|857879_859055_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	78.5	5.8e-175
ARB77523.1|859376_861791_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	87.1	0.0e+00
ARB77524.1|861809_862121_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	68.0	6.5e-33
ARB77525.1|862239_863499_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	83.5	2.2e-42
>prophage 2
CP020406	Staphylococcus lugdunensis strain FDAARGOS_222 chromosome, complete genome	2540323	980215	989234	2540323	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
ARB77625.1|980215_981220_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	3.8e-05
ARB77626.1|981222_982248_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
ARB77627.1|982266_983406_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	45.0	4.2e-85
ARB77628.1|983424_983685_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	39.3	2.8e-05
ARB77629.1|983870_986159_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	34.4	2.8e-32
ARB77630.1|986419_988696_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	4.3e-65
ARB77631.1|988715_989234_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	1.4e-27
>prophage 3
CP020406	Staphylococcus lugdunensis strain FDAARGOS_222 chromosome, complete genome	2540323	1114905	1123602	2540323		uncultured_Mediterranean_phage(33.33%)	9	NA	NA
ARB77757.1|1114905_1115637_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	24.0	1.1e-06
ARB77758.1|1115629_1116163_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	29.1	3.5e-10
ARB77759.1|1116165_1116906_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
ARB77760.1|1117052_1117778_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	43.5	3.4e-48
ARB77761.1|1117761_1119510_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	31.6	3.2e-20
ARB77762.1|1120233_1120776_+	ECF transporter S component	NA	NA	NA	NA	NA
ARB77763.1|1120917_1121166_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	49.3	5.8e-16
ARB77764.1|1121276_1122236_+	hypothetical protein	NA	NA	NA	NA	NA
ARB77765.1|1122222_1123602_+	ATP-dependent DNA helicase RecQ	NA	J2YAJ8	Acanthamoeba_polyphaga_lentillevirus	33.2	1.6e-51
>prophage 4
CP020406	Staphylococcus lugdunensis strain FDAARGOS_222 chromosome, complete genome	2540323	1528121	1536591	2540323		Synechococcus_phage(33.33%)	9	NA	NA
ARB78116.1|1528121_1528688_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.2	3.4e-27
ARB78117.1|1528687_1529719_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.1	6.7e-66
ARB78118.1|1529711_1531196_-	amidophosphoribosyltransferase	NA	A0A1B1ISH6	uncultured_Mediterranean_phage	30.8	3.2e-45
ARB78119.1|1531174_1533364_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	37.8	2.6e-136
ARB78120.1|1533356_1534028_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
ARB78121.1|1534029_1534290_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
ARB78122.1|1534289_1534994_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	G8EYA2	Synechococcus_phage	42.4	4.0e-46
ARB78123.1|1534994_1536122_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
ARB78124.1|1536108_1536591_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.7	6.8e-21
>prophage 5
CP020406	Staphylococcus lugdunensis strain FDAARGOS_222 chromosome, complete genome	2540323	1813521	1831318	2540323		uncultured_Caudovirales_phage(58.33%)	16	NA	NA
ARB78380.2|1813521_1814475_-	iron ABC transporter permease	NA	A0A2H4J116	uncultured_Caudovirales_phage	62.5	2.5e-06
ARB78381.1|1814461_1815439_-	iron ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	79.3	5.8e-136
ARB78382.1|1815999_1817034_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
ARB78383.1|1817150_1817933_-	iron ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	30.1	2.8e-16
ARB78384.1|1817929_1818889_-	iron ABC transporter permease	NA	A0A2H4J116	uncultured_Caudovirales_phage	62.0	4.1e-09
ARB78385.1|1818869_1819847_-	iron ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	81.4	4.4e-144
ARB78386.1|1820215_1821184_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	92.9	7.4e-176
ARB78387.1|1821423_1823529_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
ARB78388.1|1823491_1823890_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	76.5	4.3e-53
ARB78389.1|1824763_1825633_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
ARB78390.1|1825645_1826146_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.8	1.0e-51
ARB78391.1|1826430_1827936_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	34.1	2.9e-62
ARB78392.1|1828263_1829178_+	diacylglycerol kinase family lipid kinase	NA	NA	NA	NA	NA
ARB78393.1|1829223_1829421_+	hypothetical protein	NA	NA	NA	NA	NA
ARB78394.1|1829494_1830025_-	5'(3')-deoxyribonucleotidase	NA	A0A0A0PKY7	Bacillus_phage	38.4	4.4e-29
ARB78395.1|1830262_1831318_-	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	27.7	3.0e-21
>prophage 6
CP020406	Staphylococcus lugdunensis strain FDAARGOS_222 chromosome, complete genome	2540323	1845840	1852461	2540323		Pandoravirus(16.67%)	8	NA	NA
ARB78406.1|1845840_1846992_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.1	6.0e-23
ARB78407.1|1846975_1847572_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.5	1.4e-39
ARB78408.1|1847907_1848579_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	7.9e-68
ARB78409.1|1848580_1849000_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
ARB78410.1|1848999_1849716_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	40.7	1.8e-49
ARB78411.1|1849814_1850405_+	hypothetical protein	NA	NA	NA	NA	NA
ARB78412.1|1850445_1851468_-	glycosyltransferase	NA	A0A192Y8W7	Salmonella_phage	41.9	5.4e-60
ARB78413.1|1851624_1852461_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	44.4	9.6e-63
