assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_001735655.2_ASM173565v2	CP025495	Staphylococcus aureus subsp. aureus strain 3020.C01 chromosome, complete genome	1	425823-426131	1,1	CRT,CRISPRCasFinder	no		DEDDh,cas3,WYL,csa3,DinG	Orphan	CCAACTTGCANNNTNTNNNNAGCTGNCTTT,CCAGCCTCTGTGTTGGGGCCCCG	30,23	3	4	425936-425961|426050-426075|426050-426075|426076-426108	CP025495.1_977026-977051|CP025495.1_518204-518179|CP025495.1_555242-555267|CP025495.1_474632-474600	NA:NA	4,1	4	Orphan	DEDDh,cas3,WYL,csa3,DinG	NA,NA	NA|301aa|up_9|CP025495.1_409947_410850_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1218aa|up_8|CP025495.1_411015_414669_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1159aa|up_7|CP025495.1_414669_418146_-	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|192aa|up_6|CP025495.1_418305_418881_-	TIGR02227, Inactive_signal_peptidase_IA	NA|175aa|up_5|CP025495.1_418896_419421_-	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_4|CP025495.1_419425_420001_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|444aa|up_3|CP025495.1_420325_421657_-	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|402aa|up_2|CP025495.1_422007_423213_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|460aa|up_1|CP025495.1_423202_424582_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|310aa|up_0|CP025495.1_424823_425753_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|415aa|down_0|CP025495.1_426255_427500_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_1|CP025495.1_427608_428799_-	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|376aa|down_2|CP025495.1_429106_430234_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|126aa|down_3|CP025495.1_430595_430973_-	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|198aa|down_4|CP025495.1_431388_431982_-	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|128aa|down_5|CP025495.1_432045_432429_+	pfam08810, KapB, Kinase associated protein B	NA|802aa|down_6|CP025495.1_432559_434965_+	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|143aa|down_7|CP025495.1_434957_435386_+	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|110aa|down_8|CP025495.1_435397_435727_+	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|499aa|down_9|CP025495.1_435719_437216_+	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed
GCA_001735655.2_ASM173565v2	CP025495	Staphylococcus aureus subsp. aureus strain 3020.C01 chromosome, complete genome	2	474880-474961	2	CRISPRCasFinder	no		DEDDh,cas3,WYL,csa3,DinG	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	2	474904-474937|474904-474937	CP025495.1_2775745-2775778|CP025495.1_2864970-2864937	NA	1	1	Orphan	DEDDh,cas3,WYL,csa3,DinG	NA|38aa|up_0|CP025495.1_474532_474646_-,NA|38aa|down_1|CP025495.1_475944_476058_-	NA|436aa|up_9|CP025495.1_466719_468027_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_8|CP025495.1_468124_468886_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_7|CP025495.1_469213_470065_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_6|CP025495.1_470297_470492_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_5|CP025495.1_470845_471667_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_4|CP025495.1_471684_472380_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_3|CP025495.1_472372_473398_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_2|CP025495.1_473647_473944_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_1|CP025495.1_473936_474323_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|38aa|up_0|CP025495.1_474532_474646_-	NA	NA|293aa|down_0|CP025495.1_475064_475943_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_1|CP025495.1_475944_476058_-	NA	NA|127aa|down_2|CP025495.1_476121_476502_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_3|CP025495.1_476659_477016_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_4|CP025495.1_477159_477480_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_5|CP025495.1_477629_478169_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_6|CP025495.1_478251_478968_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_7|CP025495.1_479115_479538_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_8|CP025495.1_479936_480431_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_9|CP025495.1_480585_481203_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]
GCA_001735655.2_ASM173565v2	CP025495	Staphylococcus aureus subsp. aureus strain 3020.C01 chromosome, complete genome	3	510848-510940	3	CRISPRCasFinder	no		DEDDh,cas3,WYL,csa3,DinG	Orphan	AGTTGGGGTGGGGCCCCAACATAGTGAAATTGG	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL,csa3,DinG	NA|153aa|up_6|CP025495.1_502377_502836_-,NA|45aa|down_6|CP025495.1_518115_518250_+	NA|791aa|up_9|CP025495.1_498815_501188_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|247aa|up_8|CP025495.1_501221_501962_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|78aa|up_7|CP025495.1_502077_502311_-	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|153aa|up_6|CP025495.1_502377_502836_-	NA	NA|435aa|up_5|CP025495.1_503175_504480_-	PRK00077, eno, enolase; Provisional	NA|506aa|up_4|CP025495.1_504609_506127_-	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|254aa|up_3|CP025495.1_506129_506891_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|up_2|CP025495.1_507012_508203_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|up_1|CP025495.1_508341_509352_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|338aa|up_0|CP025495.1_509404_510418_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|210aa|down_0|CP025495.1_511177_511807_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|301aa|down_1|CP025495.1_512508_513411_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|down_2|CP025495.1_513653_514241_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|down_3|CP025495.1_514814_515759_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|down_4|CP025495.1_515868_516864_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|down_5|CP025495.1_516860_517772_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|45aa|down_6|CP025495.1_518115_518250_+	NA	NA|312aa|down_7|CP025495.1_518595_519531_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|down_8|CP025495.1_519597_521037_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|down_9|CP025495.1_521044_521530_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins
GCA_001735655.2_ASM173565v2	CP025495	Staphylococcus aureus subsp. aureus strain 3020.C01 chromosome, complete genome	4	693952-694044	4	CRISPRCasFinder	no		DEDDh,cas3,WYL,csa3,DinG	Orphan	TAGCATCCAACTGCGTTCCTCTTCATCTTTAG	32	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL,csa3,DinG	NA|239aa|up_5|CP025495.1_688819_689536_-,NA|169aa|up_4|CP025495.1_689697_690204_-,NA|82aa|down_1|CP025495.1_695032_695278_+,NA|36aa|down_4|CP025495.1_697451_697559_-	NA|168aa|up_9|CP025495.1_684501_685005_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|179aa|up_8|CP025495.1_684985_685522_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|125aa|up_7|CP025495.1_687237_687612_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_6|CP025495.1_687862_688651_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_5|CP025495.1_688819_689536_-	NA	NA|169aa|up_4|CP025495.1_689697_690204_-	NA	NA|267aa|up_3|CP025495.1_690339_691140_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|CP025495.1_691123_691843_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|317aa|up_1|CP025495.1_691897_692848_-	pfam01032, FecCD, FecCD transport family	NA|276aa|up_0|CP025495.1_692995_693823_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|CP025495.1_694261_694897_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|82aa|down_1|CP025495.1_695032_695278_+	NA	NA|554aa|down_2|CP025495.1_695284_696946_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|128aa|down_3|CP025495.1_696942_697326_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|36aa|down_4|CP025495.1_697451_697559_-	NA	NA|337aa|down_5|CP025495.1_697633_698644_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|174aa|down_6|CP025495.1_699142_699664_-	pfam08741, YwhD, YwhD family	NA|432aa|down_7|CP025495.1_699691_700987_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_8|CP025495.1_701026_701503_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_9|CP025495.1_701671_702208_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]
GCA_001735655.2_ASM173565v2	CP025495	Staphylococcus aureus subsp. aureus strain 3020.C01 chromosome, complete genome	5	938284-938385	5	CRISPRCasFinder	no		DEDDh,cas3,WYL,csa3,DinG	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL,csa3,DinG	NA|179aa|up_7|CP025495.1_929902_930439_+,NA|221aa|up_1|CP025495.1_936530_937193_+,NA|86aa|down_0|CP025495.1_938592_938850_+,NA|34aa|down_1|CP025495.1_939057_939159_-,NA|98aa|down_6|CP025495.1_944146_944440_+,NA|128aa|down_8|CP025495.1_945393_945777_+	NA|91aa|up_9|CP025495.1_928134_928407_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|235aa|up_8|CP025495.1_928805_929510_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|179aa|up_7|CP025495.1_929902_930439_+	NA	NA|514aa|up_6|CP025495.1_930551_932093_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|CP025495.1_932117_933584_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|CP025495.1_933621_934890_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|CP025495.1_934889_935468_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|CP025495.1_935980_936388_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|CP025495.1_936530_937193_+	NA	NA|319aa|up_0|CP025495.1_937310_938267_+	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|86aa|down_0|CP025495.1_938592_938850_+	NA	NA|34aa|down_1|CP025495.1_939057_939159_-	NA	NA|463aa|down_2|CP025495.1_939243_940632_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_3|CP025495.1_940712_941468_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_4|CP025495.1_941959_942529_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_5|CP025495.1_942544_944068_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|98aa|down_6|CP025495.1_944146_944440_+	NA	NA|209aa|down_7|CP025495.1_944512_945139_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_8|CP025495.1_945393_945777_+	NA	NA|194aa|down_9|CP025495.1_945842_946424_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
GCA_001735655.2_ASM173565v2	CP025495	Staphylococcus aureus subsp. aureus strain 3020.C01 chromosome, complete genome	6	1415107-1415280	1,6	PILER-CR,CRISPRCasFinder	no		DEDDh,cas3,WYL,csa3,DinG	Orphan	TGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGGAAAG,TTACAATAATGTGCAAGTTGGCGG	40,24	2	23	1415160-1415176|1415160-1415176|1415160-1415176|1415160-1415176|1415160-1415176|1415160-1415176|1415160-1415176|1415230-1415245|1415230-1415245|1415230-1415245|1415230-1415245|1415230-1415245|1415230-1415245|1415230-1415245|1415230-1415245|1415230-1415245|1415230-1415245|1415230-1415245|1415230-1415245|1415230-1415245|1415230-1415245|1415230-1415245|1415230-1415245	CP025495.1_523573-523589|CP025495.1_523628-523644|CP025495.1_1058797-1058781|CP025497.1_22525-22509|CP025497.1_23711-23695|CP025497.1_24521-24505|CP025497.1_35041-35057|CP025495.1_208085-208070|CP025495.1_308698-308713|CP025495.1_474607-474622|CP025495.1_518209-518224|CP025495.1_977021-977006|CP025495.1_1580581-1580596|CP025495.1_2204467-2204482|CP025495.1_2204525-2204540|CP025495.1_2775717-2775732|CP025495.1_2860586-2860601|CP025495.1_2864998-2864983|CP025495.1_212053-212038|CP025495.1_1767187-1767202|CP025495.1_2371919-2371904|CP025495.1_2550484-2550499|CP025495.1_2818930-2818945	NA:NA	2,1	2	Orphan	DEDDh,cas3,WYL,csa3,DinG	NA|60aa|up_1|CP025495.1_1412066_1412246_+,NA	NA|205aa|up_9|CP025495.1_1405784_1406399_+	PRK13584, hisG, ATP phosphoribosyltransferase	NA|417aa|up_8|CP025495.1_1406391_1407642_+	PRK13770, PRK13770, histidinol dehydrogenase; Provisional	NA|338aa|up_7|CP025495.1_1407657_1408671_+	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]	NA|193aa|up_6|CP025495.1_1408639_1409218_+	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase	NA|193aa|up_5|CP025495.1_1409214_1409793_+	PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|235aa|up_4|CP025495.1_1409785_1410490_+	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional	NA|253aa|up_3|CP025495.1_1410486_1411245_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|211aa|up_2|CP025495.1_1411241_1411874_+	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|60aa|up_1|CP025495.1_1412066_1412246_+	NA	NA|681aa|up_0|CP025495.1_1412966_1415009_+	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|351aa|down_0|CP025495.1_1415455_1416508_-	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]	NA|291aa|down_1|CP025495.1_1416494_1417367_-	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase	NA|102aa|down_2|CP025495.1_1417363_1417669_-	TIGR03932, IcaD_partial, intracellular adhesion protein D	NA|413aa|down_3|CP025495.1_1417632_1418871_-	TIGR03937, Poly-beta-16-N-acetyl-D-glucosamine_synthase, poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA|187aa|down_4|CP025495.1_1419034_1419595_+	pfam18665, TetR_C_37, Tetracyclin repressor-like, C-terminal domain	NA|221aa|down_5|CP025495.1_1420442_1421105_+	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|231aa|down_6|CP025495.1_1421121_1421814_+	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|256aa|down_7|CP025495.1_1421810_1422578_+	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|167aa|down_8|CP025495.1_1422812_1423313_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|159aa|down_9|CP025495.1_1423315_1423792_+	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase
GCA_001735655.2_ASM173565v2	CP025495	Staphylococcus aureus subsp. aureus strain 3020.C01 chromosome, complete genome	7	1856366-1856559	2	CRT	no		DEDDh,cas3,WYL,csa3,DinG	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	3	12	1856389-1856421|1856389-1856421|1856389-1856421|1856389-1856421|1856445-1856480|1856445-1856480|1856445-1856480|1856445-1856480|1856504-1856536|1856504-1856536|1856504-1856536|1856504-1856536	CP025495.1_208102-208070|CP025495.1_518192-518224|CP025495.1_1580564-1580596|CP025495.1_2865015-2864983|CP025495.1_208158-208123|CP025495.1_2372050-2372015|CP025495.1_2204566-2204601|CP025495.1_2550525-2550560|CP025495.1_208102-208070|CP025495.1_1580564-1580596|CP025495.1_2775700-2775732|CP025495.1_2865015-2864983	NA	3	3	Orphan	DEDDh,cas3,WYL,csa3,DinG	NA,NA|57aa|down_0|CP025495.1_1856618_1856789_-,NA|84aa|down_5|CP025495.1_1859928_1860180_-,NA|106aa|down_8|CP025495.1_1865304_1865622_-,NA|55aa|down_9|CP025495.1_1865866_1866031_-	NA|202aa|up_9|CP025495.1_1849260_1849866_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|CP025495.1_1850035_1851040_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|CP025495.1_1851070_1851577_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|CP025495.1_1851578_1852073_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|CP025495.1_1852135_1853395_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|CP025495.1_1853391_1853877_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|CP025495.1_1853890_1854337_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|CP025495.1_1854342_1854576_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|CP025495.1_1854582_1855182_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|CP025495.1_1855201_1856224_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|57aa|down_0|CP025495.1_1856618_1856789_-	NA	NA|117aa|down_1|CP025495.1_1856914_1857265_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|CP025495.1_1857366_1858578_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|CP025495.1_1858570_1859011_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|CP025495.1_1859172_1859937_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|CP025495.1_1859928_1860180_-	NA	NA|422aa|down_6|CP025495.1_1860568_1861834_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|CP025495.1_1861950_1865118_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|CP025495.1_1865304_1865622_-	NA	NA|55aa|down_9|CP025495.1_1865866_1866031_-	NA
GCA_001735655.2_ASM173565v2	CP025495	Staphylococcus aureus subsp. aureus strain 3020.C01 chromosome, complete genome	8	1980327-1980477	7	CRISPRCasFinder	no	csa3	DEDDh,cas3,WYL,csa3,DinG	Type I-A	TGCATAAGAGCCCCTAACAACTAAAGTT	28	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,WYL,csa3,DinG	NA|31aa|up_3|CP025495.1_1977686_1977779_-,NA|35aa|up_0|CP025495.1_1979890_1979995_+,NA|364aa|down_0|CP025495.1_1980494_1981586_-,NA|77aa|down_5|CP025495.1_1985374_1985605_+	NA|145aa|up_9|CP025495.1_1968405_1968840_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_8|CP025495.1_1968851_1970984_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_7|CP025495.1_1971018_1972557_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_6|CP025495.1_1973237_1975043_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_5|CP025495.1_1975274_1976057_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_4|CP025495.1_1976124_1976982_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|31aa|up_3|CP025495.1_1977686_1977779_-	NA	NA|379aa|up_2|CP025495.1_1978067_1979204_+	pfam02037, SAP, SAP domain	NA|68aa|up_1|CP025495.1_1979262_1979466_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|35aa|up_0|CP025495.1_1979890_1979995_+	NA	NA|364aa|down_0|CP025495.1_1980494_1981586_-	NA	NA|327aa|down_1|CP025495.1_1981851_1982832_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|CP025495.1_1982833_1983154_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|CP025495.1_1983305_1983971_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|CP025495.1_1984405_1985344_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|CP025495.1_1985374_1985605_+	NA	NA|458aa|down_6|CP025495.1_1986276_1987650_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|CP025495.1_1988107_1988521_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|CP025495.1_1988720_1989164_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|CP025495.1_1989284_1989995_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCA_001735655.2_ASM173565v2	CP025495	Staphylococcus aureus subsp. aureus strain 3020.C01 chromosome, complete genome	9	2215349-2215427	8	CRISPRCasFinder	no	DEDDh	DEDDh,cas3,WYL,csa3,DinG	Unclear	TGCAGGTTGGCGGGGCCCCAACA	23	1	5	2215372-2215404|2215372-2215404|2215372-2215404|2215372-2215404|2215372-2215404	CP025495.1_208102-208070|CP025495.1_1580564-1580596|CP025495.1_2550467-2550499|CP025495.1_2865015-2864983|CP025495.1_2775700-2775732	NA	1	1	Orphan	DEDDh,cas3,WYL,csa3,DinG	NA|31aa|up_7|CP025495.1_2209955_2210048_+,NA|37aa|up_3|CP025495.1_2213053_2213164_+,NA|138aa|up_2|CP025495.1_2213192_2213606_+,NA|71aa|up_1|CP025495.1_2213867_2214080_+,NA|129aa|down_1|CP025495.1_2216584_2216971_+,NA|92aa|down_6|CP025495.1_2220956_2221232_-	NA|357aa|up_9|CP025495.1_2208048_2209119_+	PRK02406, PRK02406, DNA polymerase IV; Validated	DEDDh|185aa|up_8|CP025495.1_2209186_2209741_-	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|31aa|up_7|CP025495.1_2209955_2210048_+	NA	NA|167aa|up_6|CP025495.1_2210129_2210630_-	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|438aa|up_5|CP025495.1_2210921_2212235_+	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|244aa|up_4|CP025495.1_2212236_2212968_+	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|37aa|up_3|CP025495.1_2213053_2213164_+	NA	NA|138aa|up_2|CP025495.1_2213192_2213606_+	NA	NA|71aa|up_1|CP025495.1_2213867_2214080_+	NA	NA|329aa|up_0|CP025495.1_2214095_2215082_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|253aa|down_0|CP025495.1_2215609_2216368_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|129aa|down_1|CP025495.1_2216584_2216971_+	NA	NA|234aa|down_2|CP025495.1_2216985_2217687_+	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|348aa|down_3|CP025495.1_2217683_2218727_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|210aa|down_4|CP025495.1_2218716_2219346_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|406aa|down_5|CP025495.1_2219461_2220679_-	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|92aa|down_6|CP025495.1_2220956_2221232_-	NA	NA|155aa|down_7|CP025495.1_2221238_2221703_-	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|67aa|down_8|CP025495.1_2221849_2222050_+	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|419aa|down_9|CP025495.1_2222052_2223309_+	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)
