assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_001717975.3_ASM171797v3	CP017094	Staphylococcus aureus subsp. aureus strain 2148.C01 chromosome, complete genome	1	41702-41780	1	CRISPRCasFinder	no	DEDDh	DEDDh,csa3,cas3,DinG,WYL	Unclear	TGCAGGTTGGCGGGGCCCCAACA	23	1	6	41725-41757|41725-41757|41725-41757|41725-41757|41725-41757|41725-41757	CP017094.2_376817-376849|CP017094.2_691367-691335|CP017094.2_899492-899460|CP017094.2_1223536-1223568|CP017094.2_2261495-2261527|CP017094.2_602051-602083	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|31aa|up_7|CP017094.2_36308_36401_+,NA|37aa|up_3|CP017094.2_39406_39517_+,NA|138aa|up_2|CP017094.2_39545_39959_+,NA|71aa|up_1|CP017094.2_40220_40433_+,NA|129aa|down_1|CP017094.2_42937_43324_+,NA|92aa|down_6|CP017094.2_47309_47585_-	NA|357aa|up_9|CP017094.2_34401_35472_+	PRK02406, PRK02406, DNA polymerase IV; Validated	DEDDh|185aa|up_8|CP017094.2_35539_36094_-	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|31aa|up_7|CP017094.2_36308_36401_+	NA	NA|167aa|up_6|CP017094.2_36482_36983_-	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|438aa|up_5|CP017094.2_37274_38588_+	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|244aa|up_4|CP017094.2_38589_39321_+	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|37aa|up_3|CP017094.2_39406_39517_+	NA	NA|138aa|up_2|CP017094.2_39545_39959_+	NA	NA|71aa|up_1|CP017094.2_40220_40433_+	NA	NA|329aa|up_0|CP017094.2_40448_41435_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|253aa|down_0|CP017094.2_41962_42721_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|129aa|down_1|CP017094.2_42937_43324_+	NA	NA|234aa|down_2|CP017094.2_43338_44040_+	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|348aa|down_3|CP017094.2_44036_45080_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|210aa|down_4|CP017094.2_45069_45699_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|406aa|down_5|CP017094.2_45814_47032_-	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|92aa|down_6|CP017094.2_47309_47585_-	NA	NA|155aa|down_7|CP017094.2_47591_48056_-	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|67aa|down_8|CP017094.2_48202_48403_+	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|419aa|down_9|CP017094.2_48405_49662_+	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)
GCA_001717975.3_ASM171797v3	CP017094	Staphylococcus aureus subsp. aureus strain 2148.C01 chromosome, complete genome	2	1117213-1117521	1,2	CRT,CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCAACTTGCANNNTNTNNNNAGCTGNCTTT,CCAGCCTCTGTGTTGGGGCCCCG	30,23	3	4	1117326-1117351|1117326-1117351|1117440-1117465|1117466-1117498	CP017094.2_1223548-1223523|CP017094.2_1682430-1682455|CP017094.2_1260642-1260667|CP017094.2_1179976-1179944	NA:NA	4,1	4	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|301aa|up_9|CP017094.2_1101337_1102240_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1218aa|up_8|CP017094.2_1102405_1106059_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1159aa|up_7|CP017094.2_1106059_1109536_-	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|192aa|up_6|CP017094.2_1109695_1110271_-	TIGR02227, Inactive_signal_peptidase_IA	NA|175aa|up_5|CP017094.2_1110286_1110811_-	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_4|CP017094.2_1110815_1111391_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|444aa|up_3|CP017094.2_1111715_1113047_-	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|402aa|up_2|CP017094.2_1113397_1114603_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|460aa|up_1|CP017094.2_1114592_1115972_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|310aa|up_0|CP017094.2_1116213_1117143_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|415aa|down_0|CP017094.2_1117645_1118890_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_1|CP017094.2_1118998_1120189_-	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|376aa|down_2|CP017094.2_1120496_1121624_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|126aa|down_3|CP017094.2_1121985_1122363_-	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|198aa|down_4|CP017094.2_1122778_1123372_-	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|128aa|down_5|CP017094.2_1123435_1123819_+	pfam08810, KapB, Kinase associated protein B	NA|802aa|down_6|CP017094.2_1123949_1126355_+	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|143aa|down_7|CP017094.2_1126347_1126776_+	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|110aa|down_8|CP017094.2_1126787_1127117_+	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|499aa|down_9|CP017094.2_1127109_1128606_+	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed
GCA_001717975.3_ASM171797v3	CP017094	Staphylococcus aureus subsp. aureus strain 2148.C01 chromosome, complete genome	3	1180224-1180305	3	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	2	1180248-1180281|1180248-1180281	CP017094.2_602096-602129|CP017094.2_691322-691289	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|38aa|up_0|CP017094.2_1179876_1179990_-,NA|38aa|down_1|CP017094.2_1181288_1181402_-	NA|153aa|up_9|CP017094.2_1172783_1173242_+	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|243aa|up_8|CP017094.2_1173258_1173987_+	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|up_7|CP017094.2_1174010_1174739_+	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|407aa|up_6|CP017094.2_1174826_1176047_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|274aa|up_5|CP017094.2_1176189_1177011_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_4|CP017094.2_1177028_1177724_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_3|CP017094.2_1177716_1178742_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_2|CP017094.2_1178991_1179288_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_1|CP017094.2_1179280_1179667_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|38aa|up_0|CP017094.2_1179876_1179990_-	NA	NA|293aa|down_0|CP017094.2_1180408_1181287_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_1|CP017094.2_1181288_1181402_-	NA	NA|127aa|down_2|CP017094.2_1181465_1181846_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_3|CP017094.2_1182003_1182360_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_4|CP017094.2_1182503_1182824_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_5|CP017094.2_1182973_1183513_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_6|CP017094.2_1183595_1184312_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_7|CP017094.2_1184459_1184882_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_8|CP017094.2_1185280_1185775_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_9|CP017094.2_1185929_1186547_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]
GCA_001717975.3_ASM171797v3	CP017094	Staphylococcus aureus subsp. aureus strain 2148.C01 chromosome, complete genome	4	1216192-1216284	4	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	AGTTGGGGTGGGGCCCCAACATAGTGAAATTGG	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|153aa|up_6|CP017094.2_1207721_1208180_-,NA|70aa|down_6|CP017094.2_1223459_1223669_+	NA|791aa|up_9|CP017094.2_1204159_1206532_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|247aa|up_8|CP017094.2_1206565_1207306_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|78aa|up_7|CP017094.2_1207421_1207655_-	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|153aa|up_6|CP017094.2_1207721_1208180_-	NA	NA|435aa|up_5|CP017094.2_1208519_1209824_-	PRK00077, eno, enolase; Provisional	NA|506aa|up_4|CP017094.2_1209953_1211471_-	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|254aa|up_3|CP017094.2_1211473_1212235_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|up_2|CP017094.2_1212356_1213547_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|up_1|CP017094.2_1213685_1214696_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|338aa|up_0|CP017094.2_1214748_1215762_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|210aa|down_0|CP017094.2_1216521_1217151_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|301aa|down_1|CP017094.2_1217852_1218755_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|down_2|CP017094.2_1218997_1219585_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|down_3|CP017094.2_1220158_1221103_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|down_4|CP017094.2_1221212_1222208_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|down_5|CP017094.2_1222204_1223116_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|70aa|down_6|CP017094.2_1223459_1223669_+	NA	NA|312aa|down_7|CP017094.2_1223995_1224931_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|down_8|CP017094.2_1224997_1226437_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|down_9|CP017094.2_1226444_1226930_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins
GCA_001717975.3_ASM171797v3	CP017094	Staphylococcus aureus subsp. aureus strain 2148.C01 chromosome, complete genome	6	1399352-1399444	6	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TAGCATCCAACTGCGTTCCTCTTCATCTTTAG	32	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|239aa|up_5|CP017094.2_1394219_1394936_-,NA|169aa|up_4|CP017094.2_1395097_1395604_-,NA|82aa|down_1|CP017094.2_1400432_1400678_+,NA|36aa|down_4|CP017094.2_1402851_1402959_-	NA|168aa|up_9|CP017094.2_1389901_1390405_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|179aa|up_8|CP017094.2_1390385_1390922_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|125aa|up_7|CP017094.2_1392637_1393012_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_6|CP017094.2_1393262_1394051_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_5|CP017094.2_1394219_1394936_-	NA	NA|169aa|up_4|CP017094.2_1395097_1395604_-	NA	NA|267aa|up_3|CP017094.2_1395739_1396540_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|CP017094.2_1396523_1397243_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|317aa|up_1|CP017094.2_1397297_1398248_-	pfam01032, FecCD, FecCD transport family	NA|276aa|up_0|CP017094.2_1398395_1399223_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|CP017094.2_1399661_1400297_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|82aa|down_1|CP017094.2_1400432_1400678_+	NA	NA|554aa|down_2|CP017094.2_1400684_1402346_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|128aa|down_3|CP017094.2_1402342_1402726_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|36aa|down_4|CP017094.2_1402851_1402959_-	NA	NA|337aa|down_5|CP017094.2_1403033_1404044_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|174aa|down_6|CP017094.2_1404542_1405064_-	pfam08741, YwhD, YwhD family	NA|432aa|down_7|CP017094.2_1405091_1406387_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_8|CP017094.2_1406426_1406903_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_9|CP017094.2_1407071_1407608_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]
GCA_001717975.3_ASM171797v3	CP017094	Staphylococcus aureus subsp. aureus strain 2148.C01 chromosome, complete genome	7	1643688-1643789	7	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|179aa|up_7|CP017094.2_1635306_1635843_+,NA|221aa|up_1|CP017094.2_1641934_1642597_+,NA|86aa|down_0|CP017094.2_1643996_1644254_+,NA|34aa|down_1|CP017094.2_1644461_1644563_-,NA|98aa|down_6|CP017094.2_1649550_1649844_+,NA|128aa|down_8|CP017094.2_1650797_1651181_+	NA|91aa|up_9|CP017094.2_1633538_1633811_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|235aa|up_8|CP017094.2_1634209_1634914_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|179aa|up_7|CP017094.2_1635306_1635843_+	NA	NA|514aa|up_6|CP017094.2_1635955_1637497_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|CP017094.2_1637521_1638988_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|CP017094.2_1639025_1640294_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|CP017094.2_1640293_1640872_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|CP017094.2_1641384_1641792_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|CP017094.2_1641934_1642597_+	NA	NA|319aa|up_0|CP017094.2_1642714_1643671_+	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|86aa|down_0|CP017094.2_1643996_1644254_+	NA	NA|34aa|down_1|CP017094.2_1644461_1644563_-	NA	NA|463aa|down_2|CP017094.2_1644647_1646036_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_3|CP017094.2_1646116_1646872_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_4|CP017094.2_1647363_1647933_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_5|CP017094.2_1647948_1649472_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|98aa|down_6|CP017094.2_1649550_1649844_+	NA	NA|209aa|down_7|CP017094.2_1649916_1650543_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_8|CP017094.2_1650797_1651181_+	NA	NA|194aa|down_9|CP017094.2_1651246_1651828_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
GCA_001717975.3_ASM171797v3	CP017094	Staphylococcus aureus subsp. aureus strain 2148.C01 chromosome, complete genome	8	2095983-2096156	1,8	PILER-CR,CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGGAAAG,TTACAATAATGTGCAAGTTGGCGG	40,24	2	19	2096036-2096052|2096036-2096052|2096036-2096052|2096036-2096052|2096106-2096121|2096106-2096121|2096106-2096121|2096106-2096121|2096106-2096121|2096106-2096121|2096106-2096121|2096106-2096121|2096106-2096121|2096106-2096121|2096106-2096121|2096106-2096121|2096106-2096121|2096106-2096121|2096106-2096121	CP017094.2_1228973-1228989|CP017094.2_1229028-1229044|CP017094.2_1764201-1764185|CP017095.2_25900-25884|CP017094.2_30820-30835|CP017094.2_30878-30893|CP017094.2_602068-602083|CP017094.2_686938-686953|CP017094.2_691350-691335|CP017094.2_899475-899460|CP017094.2_1000088-1000103|CP017094.2_1179951-1179966|CP017094.2_1682425-1682410|CP017094.2_2261512-2261527|CP017094.2_198272-198257|CP017094.2_376834-376849|CP017094.2_645281-645296|CP017094.2_903443-903428|CP017094.2_2448115-2448130	NA:NA	2,1	2	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|60aa|up_1|CP017094.2_2092942_2093122_+,NA	NA|205aa|up_9|CP017094.2_2086660_2087275_+	PRK13584, hisG, ATP phosphoribosyltransferase	NA|417aa|up_8|CP017094.2_2087267_2088518_+	PRK13770, PRK13770, histidinol dehydrogenase; Provisional	NA|338aa|up_7|CP017094.2_2088533_2089547_+	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]	NA|193aa|up_6|CP017094.2_2089515_2090094_+	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase	NA|193aa|up_5|CP017094.2_2090090_2090669_+	PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|235aa|up_4|CP017094.2_2090661_2091366_+	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional	NA|253aa|up_3|CP017094.2_2091362_2092121_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|211aa|up_2|CP017094.2_2092117_2092750_+	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|60aa|up_1|CP017094.2_2092942_2093122_+	NA	NA|681aa|up_0|CP017094.2_2093842_2095885_+	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|351aa|down_0|CP017094.2_2096331_2097384_-	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]	NA|291aa|down_1|CP017094.2_2097370_2098243_-	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase	NA|102aa|down_2|CP017094.2_2098239_2098545_-	TIGR03932, IcaD_partial, intracellular adhesion protein D	NA|413aa|down_3|CP017094.2_2098508_2099747_-	TIGR03937, Poly-beta-16-N-acetyl-D-glucosamine_synthase, poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA|187aa|down_4|CP017094.2_2099910_2100471_+	pfam18665, TetR_C_37, Tetracyclin repressor-like, C-terminal domain	NA|221aa|down_5|CP017094.2_2101318_2101981_+	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|231aa|down_6|CP017094.2_2101997_2102690_+	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|256aa|down_7|CP017094.2_2102686_2103454_+	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|167aa|down_8|CP017094.2_2103688_2104189_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|159aa|down_9|CP017094.2_2104191_2104668_+	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase
GCA_001717975.3_ASM171797v3	CP017094	Staphylococcus aureus subsp. aureus strain 2148.C01 chromosome, complete genome	9	2538852-2539045	2	CRT	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	3	13	2538875-2538907|2538875-2538907|2538875-2538907|2538875-2538907|2538931-2538966|2538931-2538966|2538931-2538966|2538931-2538966|2538990-2539022|2538990-2539022|2538990-2539022|2538990-2539022|2538990-2539022	CP017094.2_691367-691335|CP017094.2_899492-899460|CP017094.2_1223536-1223568|CP017094.2_2261495-2261527|CP017094.2_899548-899513|CP017094.2_198403-198368|CP017094.2_30919-30954|CP017094.2_376875-376910|CP017094.2_602051-602083|CP017094.2_691367-691335|CP017094.2_899492-899460|CP017094.2_1223536-1223568|CP017094.2_2261495-2261527	NA	3	3	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|57aa|down_0|CP017094.2_2539104_2539275_-,NA|84aa|down_5|CP017094.2_2542414_2542666_-,NA|106aa|down_8|CP017094.2_2547790_2548108_-,NA|55aa|down_9|CP017094.2_2548352_2548517_-	NA|202aa|up_9|CP017094.2_2531746_2532352_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|CP017094.2_2532521_2533526_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|CP017094.2_2533556_2534063_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|CP017094.2_2534064_2534559_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|CP017094.2_2534621_2535881_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|CP017094.2_2535877_2536363_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|CP017094.2_2536376_2536823_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|CP017094.2_2536828_2537062_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|CP017094.2_2537068_2537668_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|CP017094.2_2537687_2538710_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|57aa|down_0|CP017094.2_2539104_2539275_-	NA	NA|117aa|down_1|CP017094.2_2539400_2539751_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|CP017094.2_2539852_2541064_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|CP017094.2_2541056_2541497_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|CP017094.2_2541658_2542423_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|CP017094.2_2542414_2542666_-	NA	NA|422aa|down_6|CP017094.2_2543054_2544320_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|CP017094.2_2544436_2547604_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|CP017094.2_2547790_2548108_-	NA	NA|55aa|down_9|CP017094.2_2548352_2548517_-	NA
GCA_001717975.3_ASM171797v3	CP017094	Staphylococcus aureus subsp. aureus strain 2148.C01 chromosome, complete genome	10	2662812-2662962	9	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL	Type I-A	TGCATAAGAGCCCCTAACAACTAAAGTT	28	0	0	NA	NA	NA	2	2	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|31aa|up_3|CP017094.2_2660171_2660264_-,NA|35aa|up_0|CP017094.2_2662375_2662480_+,NA|364aa|down_0|CP017094.2_2662979_2664071_-,NA|77aa|down_5|CP017094.2_2667859_2668090_+	NA|145aa|up_9|CP017094.2_2650890_2651325_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_8|CP017094.2_2651336_2653469_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_7|CP017094.2_2653503_2655042_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_6|CP017094.2_2655722_2657528_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_5|CP017094.2_2657759_2658542_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_4|CP017094.2_2658609_2659467_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|31aa|up_3|CP017094.2_2660171_2660264_-	NA	NA|379aa|up_2|CP017094.2_2660552_2661689_+	pfam02037, SAP, SAP domain	NA|68aa|up_1|CP017094.2_2661747_2661951_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|35aa|up_0|CP017094.2_2662375_2662480_+	NA	NA|364aa|down_0|CP017094.2_2662979_2664071_-	NA	NA|327aa|down_1|CP017094.2_2664336_2665317_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|CP017094.2_2665318_2665639_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|CP017094.2_2665790_2666456_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|CP017094.2_2666890_2667829_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|CP017094.2_2667859_2668090_+	NA	NA|458aa|down_6|CP017094.2_2668761_2670135_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|CP017094.2_2670592_2671006_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|CP017094.2_2671205_2671649_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|CP017094.2_2671769_2672480_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
