The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP016858	Staphylococcus aureus subsp. aureus strain 1971.C01 chromosome, complete genome	2873208	298735	307208	2873208		Synechococcus_phage(33.33%)	9	NA	NA
AOH61160.2|298735_299302_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
AOH62495.1|299304_300333_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
AOH60461.2|300325_301810_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
AOH60291.1|301788_303978_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
AOH60456.1|303970_304642_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
AOH61436.1|304643_304907_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AOH62315.1|304906_305611_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
AOH61710.1|305614_306739_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AOH61842.2|306725_307208_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
>prophage 2
CP016858	Staphylococcus aureus subsp. aureus strain 1971.C01 chromosome, complete genome	2873208	468123	487353	2873208	protease,terminase,integrase,capsid	Staphylococcus_phage(63.16%)	25	470845:470861	484801:484817
AOH60890.1|468123_468885_-	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
AOH60940.1|469212_470064_+	DUF368 domain-containing protein	NA	NA	NA	NA	NA
AOH60945.1|470296_470491_-	CsbD family protein	NA	NA	NA	NA	NA
470845:470861	attL	TTATTTAGCAGGAATAA	NA	NA	NA	NA
AOH61712.1|471524_472079_+	hypothetical protein	NA	A0A1W6JQE5	Staphylococcus_phage	76.1	4.8e-71
AOH60510.1|472313_473282_-|protease	CAAX protease	protease	A0A0H4U080	Erysipelothrix_phage	27.3	5.9e-24
AVG21341.1|473558_473714_-|terminase	terminase	terminase	A0A1W6JQF0	Staphylococcus_phage	92.0	3.1e-20
AOH61780.1|473710_474202_-	pathogenicity island protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	40.5	7.9e-25
AOH60997.1|474385_475444_-|capsid	phage capsid protein	capsid	A0A0K2CZ99	Paenibacillus_phage	26.6	3.6e-14
AOH61988.1|475430_475637_-	hypothetical protein	NA	NA	NA	NA	NA
AOH61322.1|475861_476206_-	pathogenicity island protein	NA	A0A1W6JQD5	Staphylococcus_phage	65.2	9.4e-41
AOH60928.1|476876_479249_-	DNA primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	39.3	9.8e-137
AOH62419.1|479340_479589_-	hypothetical protein	NA	Q4ZE75	Staphylococcus_phage	58.6	1.4e-22
AOH62136.1|479589_479973_-	pathogenicity island protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.9	4.4e-63
AOH63094.1|479974_480178_-	pathogenicity island protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
AOH61959.1|480144_480318_-	pathogenicity island protein	NA	NA	NA	NA	NA
AOH62963.1|480329_480602_-	pathogenicity island protein	NA	Q4ZE77	Staphylococcus_phage	88.9	4.8e-40
AOH63032.2|480594_480858_-	XRE family transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	94.8	4.1e-36
AOH60904.1|481050_481383_+	XRE family transcriptional regulator	NA	A0A1J0MFC1	Staphylococcus_phage	74.5	1.6e-37
AOH61327.1|481394_481853_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2I6PEK4	Staphylococcus_phage	82.1	4.3e-65
AVG21005.1|481869_482598_+	exotoxin	NA	A0EX09	Staphylococcus_phage	34.1	1.6e-26
AOH60678.1|482621_483350_+	exotoxin	NA	A0EX09	Staphylococcus_phage	31.8	1.2e-21
AOH60290.1|483437_484658_+|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.5	2.9e-100
AOH61077.2|484800_485622_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
484801:484817	attR	TTATTTAGCAGGAATAA	NA	NA	NA	NA
AOH60754.2|485639_486335_-	ABC transporter permease	NA	NA	NA	NA	NA
AOH60626.1|486327_487353_-	methionine import ATP-binding protein MetN 2	NA	G3M9Y6	Bacillus_virus	33.3	3.9e-26
>prophage 3
CP016858	Staphylococcus aureus subsp. aureus strain 1971.C01 chromosome, complete genome	2873208	566044	580775	2873208		uncultured_Caudovirales_phage(50.0%)	18	NA	NA
AOH62990.1|566044_566806_-	iron ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
AOH61389.2|566802_567759_-	iron ABC transporter permease	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
AOH60621.1|567745_568717_-	iron ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
AVG21016.1|568755_568911_-	hypothetical protein	NA	NA	NA	NA	NA
AVG21017.1|569187_569292_-	hypothetical protein	NA	NA	NA	NA	NA
AOH61732.1|569424_570396_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
AVG21018.1|570513_572619_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
AOH62295.1|572581_572980_-	protein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
AVG21019.1|573129_573396_-	ribonucleoside-diphosphate reductase	NA	NA	NA	NA	NA
AOH61912.2|573780_574647_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AOH60939.1|574666_575167_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
AVG21020.1|575196_575442_+	hypothetical protein	NA	NA	NA	NA	NA
AOH60287.1|575507_577013_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
AVG21021.1|577090_577192_-	hypothetical protein	NA	NA	NA	NA	NA
AOH62125.1|577282_578200_+	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
AVG21022.1|578612_578711_-	hypothetical protein	NA	NA	NA	NA	NA
AOH61397.1|578823_579366_-	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
AOH62168.1|579716_580775_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
>prophage 4
CP016858	Staphylococcus aureus subsp. aureus strain 1971.C01 chromosome, complete genome	2873208	592747	600567	2873208		Pandoravirus(16.67%)	10	NA	NA
AOH62970.1|592747_593899_-	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
AOH60342.1|593882_594476_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
AOH62936.1|594826_595495_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
AOH61760.1|595496_595916_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
AOH60568.1|595919_596633_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
AOH60564.1|596731_597316_+	hypothetical protein	NA	NA	NA	NA	NA
AOH61855.1|597595_598036_+	hypothetical protein	NA	NA	NA	NA	NA
AOH62243.1|598377_598851_+	DoxX family protein	NA	NA	NA	NA	NA
AOH61969.2|598825_599512_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AOH61478.1|599511_600567_+	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
>prophage 5
CP016858	Staphylococcus aureus subsp. aureus strain 1971.C01 chromosome, complete genome	2873208	2110310	2197956	2873208	protease,terminase,tail,integrase,capsid,head,holin,portal	Staphylococcus_phage(92.41%)	114	2124177:2124194	2149108:2149125
AOH61456.1|2110310_2111054_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AOH62444.1|2111228_2111513_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
AOH62846.1|2111588_2113205_+	molecular chaperone GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
AVG21223.1|2113906_2114119_+	pathogenicity island family protein	NA	Q4ZE86	Staphylococcus_phage	74.3	1.1e-23
AOH60770.1|2114115_2114706_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	95.8	1.1e-97
AOH61520.2|2115023_2115401_+	hypothetical protein	NA	NA	NA	NA	NA
AOH63086.1|2115565_2116009_+	N-acetyltransferase	NA	NA	NA	NA	NA
AOH60320.1|2116861_2118169_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
AOH62075.2|2118329_2119241_+	ferrichrome ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AOH60950.2|2119302_2120148_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AOH61422.2|2120519_2121743_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AVG21224.1|2122177_2123233_+	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
AOH62742.2|2123254_2124271_+	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.0	1.1e-25
2124177:2124194	attL	AAAAAGAAGAAAAATTAT	NA	NA	NA	NA
AOH62474.2|2125389_2126427_-|integrase	site-specific integrase	integrase	A0A1X9H022	Staphylococcus_phage	99.7	3.8e-178
AOH62147.1|2126617_2127331_-	toxin MazF	NA	A0A1X9H026	Staphylococcus_phage	100.0	5.0e-129
AOH61939.2|2127408_2127591_-	hypothetical protein	NA	A0A0H3U4Z4	Staphylococcus_phage	100.0	4.1e-27
AOH61503.1|2127794_2128136_-	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
AOH60709.1|2128141_2129074_-	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
AOH61935.1|2129089_2129803_-	XRE family transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
AVG21225.1|2129765_2129939_+	transcriptional regulator	NA	NA	NA	NA	NA
AOH61195.1|2129935_2130199_+	XRE family transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
AVG21226.1|2130214_2130430_+	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
AOH61460.1|2130418_2130748_-	hypothetical protein	NA	A0A0H3U4Z1	Staphylococcus_phage	100.0	4.6e-53
AOH60604.1|2130798_2131551_+	oxidoreductase	NA	A0A0H3U319	Staphylococcus_phage	100.0	5.6e-139
AOH62523.2|2131739_2131970_-	hypothetical protein	NA	A0A0H3U2T9	Staphylococcus_phage	100.0	9.4e-37
AOH60270.1|2132028_2132349_+	DUF771 domain-containing protein	NA	A0A0H3U4C3	Staphylococcus_phage	100.0	1.5e-56
AVG21227.1|2132345_2132507_+	DUF1270 domain-containing protein	NA	A0A0H3U4Y7	Staphylococcus_phage	100.0	3.8e-21
AOH61700.1|2132601_2132862_+	hypothetical protein	NA	A0A0H3U2W4	Staphylococcus_phage	100.0	9.3e-41
AOH60867.1|2132901_2133162_+	DUF1108 domain-containing protein	NA	A0A0H3U2T6	Staphylococcus_phage	100.0	6.8e-44
AVG21228.1|2133170_2133434_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
AOH62563.1|2133442_2135386_+	ATPase	NA	A0A2I6PDH3	Staphylococcus_phage	94.7	0.0e+00
AOH63120.1|2135387_2136308_+	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
AOH60392.2|2136388_2137006_+	MBL fold metallo-hydrolase	NA	A0A0H3U2T4	Staphylococcus_phage	100.0	4.1e-87
AOH62559.1|2137006_2137477_+	single-stranded DNA-binding protein	NA	A0A0H3U4B5	Staphylococcus_phage	100.0	4.4e-81
AOH61052.1|2137506_2138400_+	DnaD domain protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
AOH61863.1|2138406_2138625_+	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
AOH60431.1|2138633_2139038_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A0H3U2W2	Staphylococcus_phage	100.0	1.4e-72
AOH61862.1|2139050_2139419_+	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
AOH61997.2|2139422_2139665_+	hypothetical protein	NA	A0A0H3U4B0	Staphylococcus_phage	100.0	1.1e-40
AOH62723.2|2139673_2140045_+	acetyltransferase	NA	A0A0H3U4X7	Staphylococcus_phage	97.3	4.7e-54
AOH63146.1|2140037_2140274_+	DUF1024 domain-containing protein	NA	A0A0H3U313	Staphylococcus_phage	100.0	5.3e-35
AOH61149.1|2140263_2140506_+	hypothetical protein	NA	A0A2I6PF40	Staphylococcus_phage	100.0	3.7e-36
AOH61475.2|2140498_2141032_+	dUTP pyrophosphatase	NA	A0A0H3U2T1	Staphylococcus_phage	100.0	1.6e-95
AOH61328.1|2141068_2141314_+	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
AOH61186.1|2141310_2141517_+	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
AOH60715.1|2141513_2141900_+	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
AOH62408.1|2141896_2142046_+	transcriptional regulator	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
AOH63035.1|2142045_2142246_+	hypothetical protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
AOH60401.2|2142273_2142690_+	transcriptional regulator	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
AOH61476.1|2142921_2143221_+	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
AOH60978.1|2143350_2143695_+	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
AOH62330.1|2143691_2145353_+|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
AOH60821.1|2145368_2146556_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
AOH62878.1|2146539_2147277_+|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
AOH61810.1|2147300_2148446_+|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
AOH63040.1|2148465_2148750_+	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
AOH61360.1|2148739_2149024_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
AOH61665.1|2149007_2149370_+|head,tail	phage head-tail adapter protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
2149108:2149125	attR	AAAAAGAAGAAAAATTAT	NA	NA	NA	NA
AOH61001.1|2149366_2149771_+	hypothetical protein	NA	A0A0H3U2V1	Staphylococcus_phage	100.0	8.7e-70
AVG21229.1|2149767_2150172_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	95.5	1.4e-67
AOH60296.1|2150175_2150820_+|tail	phage tail protein	tail	A0A0H3U4E6	Staphylococcus_phage	100.0	6.5e-120
AVG21230.1|2150846_2151086_+	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	94.6	4.0e-30
AOH62730.1|2151135_2151486_+	hypothetical protein	NA	A0A0H3U503	Staphylococcus_phage	100.0	1.3e-58
AOH60680.1|2151730_2156260_+|tail	phage tail tape measure protein	tail	A0A1X9H084	Staphylococcus_phage	95.0	0.0e+00
AOH62392.2|2156256_2157741_+|tail	phage tail protein	tail	A0A0H3U501	Staphylococcus_phage	100.0	2.0e-297
AOH62653.1|2157756_2161542_+	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.5	0.0e+00
AOH61390.1|2161531_2161684_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
AOH62778.1|2161730_2162018_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
AOH60708.1|2162075_2162372_+	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
AOH62881.2|2162521_2162698_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
AVG21231.1|2162750_2162858_-	hypothetical protein	NA	NA	NA	NA	NA
AOH62648.1|2162909_2163164_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
AOH62500.1|2163175_2163931_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
AOH61943.1|2164121_2164613_+	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
AVG21232.1|2165139_2165598_+	amidase	NA	R9QTN8	Staphylococcus_phage	98.7	4.9e-85
AOH62051.2|2165692_2166142_-	chemotaxis inhibitory protein	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
AOH61672.1|2166826_2167177_+	inhibitor	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
AOH63114.2|2167229_2167490_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
AVG21233.1|2167468_2167777_-	hypothetical protein	NA	M9NTD8	Staphylococcus_phage	100.0	2.1e-39
AVG21234.1|2167800_2167980_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
AOH61512.2|2168351_2168552_-	hypothetical protein	NA	A0A1P8L6A7	Staphylococcus_phage	100.0	3.4e-27
AOH61795.1|2168937_2170692_+	MAP domain-containing protein	NA	NA	NA	NA	NA
AVG21235.1|2170702_2170993_+	MAP domain-containing protein	NA	NA	NA	NA	NA
AOH61459.1|2171316_2172603_-	aspartate aminotransferase	NA	NA	NA	NA	NA
AVG21236.1|2172802_2172901_+	hypothetical protein	NA	NA	NA	NA	NA
AOH62285.1|2173143_2173320_+	hypothetical protein	NA	NA	NA	NA	NA
AOH62376.1|2173583_2173964_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AOH63132.1|2173960_2174857_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
AOH60752.1|2174857_2175538_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
AOH60471.1|2175534_2176407_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
AOH63070.1|2176406_2177147_+	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
AOH60808.2|2177212_2177776_-	thioredoxin family protein	NA	NA	NA	NA	NA
AVG21237.1|2177896_2178421_+	hypothetical protein	NA	NA	NA	NA	NA
AOH62048.1|2178480_2179038_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
AOH61250.1|2179034_2179877_+	hypothetical protein	NA	NA	NA	NA	NA
AOH60306.1|2179933_2180974_-	linear amide C-N hydrolase	NA	NA	NA	NA	NA
AOH62623.1|2181424_2181598_+	hypothetical protein	NA	NA	NA	NA	NA
AOH62880.1|2182170_2182572_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
AOH62816.1|2182841_2183870_+	hypothetical protein	NA	NA	NA	NA	NA
AOH63019.1|2183989_2185369_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AOH62757.2|2185420_2185594_+	hypothetical protein	NA	NA	NA	NA	NA
AOH61736.1|2185788_2186718_-	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
AOH62676.1|2186770_2187331_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
AOH62626.1|2187702_2188800_+	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	1.9e-47
AOH61977.1|2189004_2190567_+	sodium-dependent dicarboxylate transporter SdcS	NA	NA	NA	NA	NA
AVG21238.1|2190577_2190685_-	hypothetical protein	NA	NA	NA	NA	NA
AOH60333.1|2190756_2191551_-	ACT domain-containing protein	NA	NA	NA	NA	NA
AOH61483.1|2191570_2192647_-	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
AOH62770.2|2192830_2194300_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	4.5e-108
AOH61634.1|2194292_2195114_+	NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	1.8e-69
AOH60910.1|2195384_2195987_+	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
AOH62930.1|2195967_2196141_+	NETI motif-containing protein	NA	NA	NA	NA	NA
AOH61584.1|2196432_2196759_-	staphostatin A	NA	NA	NA	NA	NA
AOH61112.2|2196789_2197956_-|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
>prophage 6
CP016858	Staphylococcus aureus subsp. aureus strain 1971.C01 chromosome, complete genome	2873208	2257928	2359143	2873208	transposase,tRNA,bacteriocin,protease	Staphylococcus_phage(89.66%)	104	NA	NA
AVG21248.1|2257928_2259290_-|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
AOH61311.1|2259782_2260844_+	PTS transporter subunit IIC	NA	NA	NA	NA	NA
AOH62854.1|2261101_2262559_+	ABC transporter permease	NA	NA	NA	NA	NA
AOH63020.2|2262545_2263274_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
AOH60656.2|2263409_2264552_+	epoxyqueuosine reductase	NA	NA	NA	NA	NA
AOH61341.2|2264556_2265027_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
AOH61017.1|2265185_2265785_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA	NA
AOH62166.1|2265809_2265962_+	hypothetical protein	NA	NA	NA	NA	NA
AVG21249.1|2266026_2266233_-	hypothetical protein	NA	NA	NA	NA	NA
AVG21250.1|2266257_2266620_-	hypothetical protein	NA	NA	NA	NA	NA
AOH62646.1|2266738_2267134_+	hypothetical protein	NA	NA	NA	NA	NA
AOH61438.1|2267329_2268715_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AOH60523.2|2269177_2269999_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
AOH61399.1|2270161_2271274_+	histidine kinase	NA	NA	NA	NA	NA
AOH62633.1|2271295_2271919_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AOH62848.1|2272274_2272739_+	transcriptional regulator	NA	NA	NA	NA	NA
AOH61027.1|2272917_2274042_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AOH60418.1|2274110_2274455_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
AVG21251.1|2274837_2274936_+	hypothetical protein	NA	NA	NA	NA	NA
AVG21252.1|2275226_2276423_+	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
AOH61260.1|2276412_2279349_+	DNA repair protein Rad50	NA	NA	NA	NA	NA
AOH61078.1|2279345_2280287_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
AOH61652.1|2280407_2281370_-	foldase	NA	NA	NA	NA	NA
AOH60834.1|2281574_2282132_-	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
AOH62130.1|2282864_2283230_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
AOH61561.1|2283371_2283794_-	HIT family protein	NA	NA	NA	NA	NA
AOH62976.1|2283927_2284668_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
AOH60598.2|2284660_2285884_+	multidrug ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AOH60385.1|2286007_2286511_-	signal transduction protein TRAP	NA	NA	NA	NA	NA
AVG21253.1|2286673_2286784_+	hypothetical protein	NA	NA	NA	NA	NA
AOH62808.1|2286773_2287811_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
AOH62470.1|2287868_2288792_+	ferrochelatase	NA	NA	NA	NA	NA
AOH62775.1|2288815_2290216_+	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
AVG21254.1|2290217_2290445_-	hypothetical protein	NA	NA	NA	NA	NA
AOH61909.1|2290538_2291093_+	serine hydrolase family protein	NA	NA	NA	NA	NA
AOH62859.2|2294349_2294889_-	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.8	2.0e-61
AOH60952.1|2295687_2296623_+	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
AOH62835.2|2296624_2297608_+	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
AVG21255.1|2297849_2297993_+	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
AVG21256.1|2298094_2298286_-	hypothetical protein	NA	NA	NA	NA	NA
AOH61589.1|2298729_2298873_+	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
AOH60853.2|2298937_2301931_+|bacteriocin	bacteriocin biosynthesis protein	bacteriocin	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
AOH62191.1|2301923_2303168_+	lanthionine synthetase	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
AOH62162.1|2303183_2303702_+	enterotoxin	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
AVG21257.1|2303711_2305085_+	peptidase S8	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
AOH61737.1|2305107_2305800_+	lantibiotic ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
AOH60300.1|2305796_2306558_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
AOH62281.1|2306554_2307253_+	BsaG protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
AOH60551.1|2307726_2308293_-	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
AVG21258.1|2308602_2308821_+	hypothetical protein	NA	NA	NA	NA	NA
AOH62696.1|2309256_2309964_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
AOH61479.1|2310088_2310811_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
AOH62293.1|2310868_2311588_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
AOH62771.1|2311708_2312428_+|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
AVG21259.1|2312376_2312484_-	hypothetical protein	NA	NA	NA	NA	NA
AOH60981.1|2312585_2313302_+|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
AOH60980.1|2313452_2314172_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
AVG21260.1|2314236_2314371_+	hypothetical protein	NA	NA	NA	NA	NA
AOH60593.2|2314351_2316091_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.4	4.4e-288
AOH61207.2|2316083_2317283_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
AVG21261.1|2318132_2322245_+	ATP-binding protein	NA	A0A2H4PQT3	Staphylococcus_phage	100.0	0.0e+00
AVG21358.1|2322783_2323143_+	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
AVG21262.1|2323490_2323592_-	hypothetical protein	NA	NA	NA	NA	NA
AOH62586.1|2324012_2324156_+	hypothetical protein	NA	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
AVG21263.1|2324358_2324568_+|transposase	transposase	transposase	A0A2H4PQV6	Staphylococcus_phage	100.0	1.4e-31
AOH60723.1|2324759_2325143_+	hypothetical protein	NA	NA	NA	NA	NA
AOH61528.1|2325153_2325330_+	hypothetical protein	NA	NA	NA	NA	NA
AOH62847.1|2325331_2325517_+	hypothetical protein	NA	NA	NA	NA	NA
AOH61774.2|2325630_2326272_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
AOH60687.1|2326489_2327041_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
AOH61236.1|2327138_2327483_-	DUF3969 domain-containing protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
AOH62694.1|2327523_2327994_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	80.1	7.0e-63
AOH61644.1|2328225_2329221_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
AOH61619.2|2329301_2329952_-	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
AOH61565.2|2330254_2330710_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
AOH61192.2|2330868_2332347_+	2-succinylbenzoate-CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
AOH60985.1|2332351_2333353_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
AOH62789.1|2333349_2333607_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
AOH62885.2|2333672_2334146_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
AOH61836.2|2334150_2334897_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
AOH62409.1|2335892_2337485_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
AOH63117.2|2337855_2339049_+	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
AOH63153.1|2339173_2340082_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
AOH60493.1|2340293_2341127_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
AVG21264.1|2341189_2342827_-|transposase	IS5/IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	96.7	2.6e-282
AOH61728.1|2343222_2343576_-	camphor resistance protein CrcB	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
AOH61752.1|2343572_2343938_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	1.4e-58
AOH62499.1|2344193_2344496_-	hypothetical protein	NA	NA	NA	NA	NA
AOH61602.1|2344755_2345469_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
AOH62643.1|2345908_2346544_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AVG21265.1|2346839_2347283_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
AVG21266.1|2347269_2347713_-	competence protein ComK	NA	NA	NA	NA	NA
AOH61525.1|2347825_2348296_-	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
AOH61590.1|2348494_2348719_+	hypothetical protein	NA	NA	NA	NA	NA
AOH62667.1|2348994_2349849_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
AOH63144.1|2350143_2350539_-	protein ArsC	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
AOH62402.1|2350556_2351849_-	arsenical efflux pump membrane protein ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
AVG21267.1|2351848_2352163_-	ArsR family transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
AOH61243.1|2352685_2354188_+	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
AOH61854.2|2354680_2355712_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	4.8e-197
AOH62820.1|2355718_2356351_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
AOH61532.1|2356361_2357543_+	riboflavin biosynthesis protein RibBA	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
AOH61859.1|2357555_2358020_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
AOH63065.2|2358141_2359143_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
>prophage 7
CP016858	Staphylococcus aureus subsp. aureus strain 1971.C01 chromosome, complete genome	2873208	2362303	2375032	2873208	tRNA	Staphylococcus_phage(100.0%)	6	NA	NA
AOH63045.1|2362303_2362867_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
AOH61040.1|2362863_2363817_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
AOH60974.2|2363926_2365108_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
AOH61383.2|2365395_2367813_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
AOH63079.1|2367834_2368146_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
AVG21269.1|2368471_2375032_+	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	2.0e-304
>prophage 8
CP016858	Staphylococcus aureus subsp. aureus strain 1971.C01 chromosome, complete genome	2873208	2500488	2509531	2873208	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
AOH62247.2|2500488_2501493_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
AOH61251.1|2501494_2502520_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AOH60368.1|2502542_2503682_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
AOH60729.1|2503700_2503961_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
AOH61666.1|2504235_2506515_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
AOH61098.2|2506717_2508991_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
AOH61539.1|2509012_2509531_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 9
CP016858	Staphylococcus aureus subsp. aureus strain 1971.C01 chromosome, complete genome	2873208	2578668	2586980	2873208	tRNA	Caulobacter_phage(16.67%)	7	NA	NA
AOH62900.1|2578668_2580468_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
AOH62441.2|2580691_2581798_+	RNA polymerase sigma factor SigA	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
AOH62123.2|2581928_2582606_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
AOH60594.1|2582608_2583709_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
AOH61577.1|2583822_2585169_+	DEAD/DEAH box family ATP-dependent RNA helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
AOH62765.1|2585178_2586069_+	endonuclease	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
AOH62196.1|2586194_2586980_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
>prophage 10
CP016858	Staphylococcus aureus subsp. aureus strain 1971.C01 chromosome, complete genome	2873208	2642811	2694000	2873208	protease,terminase,tail,integrase,capsid,head,holin,portal	Staphylococcus_phage(96.97%)	68	2647774:2647794	2693666:2693686
AOH62050.2|2642811_2644563_+	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
AOH62328.1|2644807_2645737_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
AOH60892.1|2645729_2646575_+	hypothetical protein	NA	NA	NA	NA	NA
AOH63067.1|2646601_2647756_+	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	97.7	3.9e-115
2647774:2647794	attL	AGGGCAAAAAAAGGGCGGATT	NA	NA	NA	NA
AOH60694.1|2647798_2649004_-|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
AVG21307.1|2649129_2649744_+	ATPase	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
AOH62173.2|2649740_2649887_-	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	1.2e-16
AOH61662.1|2649976_2650372_-	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
AOH61950.1|2650400_2650835_-	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	96.5	3.6e-21
AOH62954.2|2650852_2651314_-	toxin	NA	A0A2I6PEK4	Staphylococcus_phage	98.7	2.9e-85
AOH60263.1|2651326_2651656_-	XRE family transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
AOH62350.1|2651816_2652008_+	XRE family transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
AOH61538.2|2652264_2652504_-	hypothetical protein	NA	A0A2I6PE22	Staphylococcus_phage	100.0	6.7e-38
AOH60764.1|2652550_2652766_+	hypothetical protein	NA	A0A2I6PEK7	Staphylococcus_phage	100.0	1.0e-32
AOH60805.1|2652790_2653054_+	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
AOH60590.2|2653319_2653637_+	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	100.0	1.1e-35
AOH61079.1|2653629_2653932_+	hypothetical protein	NA	A0A1X9IGX2	Staphylococcus_phage	100.0	2.4e-48
AOH62139.2|2653912_2654197_+	DUF1108 domain-containing protein	NA	A0A2I6PEM2	Staphylococcus_phage	100.0	1.5e-47
AOH62176.1|2654210_2654573_+	hypothetical protein	NA	A0A2I6PEM7	Staphylococcus_phage	100.0	3.7e-56
AOH61257.1|2654569_2655736_+	DUF2800 domain-containing protein	NA	A0A2I6PEL9	Staphylococcus_phage	100.0	1.4e-221
AOH63127.1|2655761_2656319_+	DUF2815 domain-containing protein	NA	A0A2I6PEP8	Staphylococcus_phage	100.0	1.8e-97
AOH60346.1|2656386_2658339_+	DNA polymerase	NA	A0A2I6PEL4	Staphylococcus_phage	100.0	0.0e+00
AOH62287.1|2658351_2658537_+	DUF3113 domain-containing protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
AOH63131.1|2658536_2658938_+	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
AOH62302.1|2658937_2659195_+	DUF3310 domain-containing protein	NA	A0A2I6PEN5	Staphylococcus_phage	100.0	2.6e-43
AOH62490.2|2659197_2659398_+	hypothetical protein	NA	A0A2I6PEM3	Staphylococcus_phage	100.0	2.5e-30
AOH61927.1|2659412_2659655_+	hypothetical protein	NA	A0A2I6PEV3	Staphylococcus_phage	100.0	1.5e-40
AOH61488.1|2659669_2659918_+	DUF1024 domain-containing protein	NA	A0A2I6PEP2	Staphylococcus_phage	100.0	1.4e-38
AOH61056.1|2659910_2660447_+	dUTPase	NA	A0A2I6PEN6	Staphylococcus_phage	100.0	1.6e-95
AOH60481.1|2660483_2660690_+	DUF1381 domain-containing protein	NA	A0A2I6PEM9	Staphylococcus_phage	100.0	1.6e-19
AVG21308.1|2660686_2660890_+	hypothetical protein	NA	A0A2I6PEQ8	Staphylococcus_phage	100.0	3.4e-30
AOH62622.1|2660882_2661119_+	hypothetical protein	NA	A0A2I6PEM4	Staphylococcus_phage	100.0	2.8e-36
AOH62055.1|2661111_2661498_+	hypothetical protein	NA	A0A1X9IGZ2	Staphylococcus_phage	100.0	3.0e-64
AOH60833.1|2661494_2661647_+	transcriptional regulator	NA	A0A2I6PEM5	Staphylococcus_phage	100.0	2.0e-19
AOH61062.1|2661714_2661915_+	DUF1514 domain-containing protein	NA	A0A2I6PEP5	Staphylococcus_phage	100.0	4.9e-26
AVG21309.1|2661941_2662148_-	hypothetical protein	NA	A0A1X9IGZ9	Staphylococcus_phage	100.0	7.6e-30
AOH61014.1|2662202_2664650_+	hypothetical protein	NA	A0A2I6PEP4	Staphylococcus_phage	100.0	0.0e+00
AVG21310.1|2664758_2664857_-	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	3.7e-11
AOH61043.1|2664990_2665281_+	VRR-NUC domain-containing protein	NA	A0A2I6PE31	Staphylococcus_phage	100.0	6.5e-51
AOH61610.1|2666640_2667078_+	transcriptional regulator	NA	A0A2I6PEN3	Staphylococcus_phage	100.0	7.9e-77
AOH61958.1|2667234_2667549_+	HNH endonuclease	NA	A0A2I6PEN4	Staphylococcus_phage	100.0	5.0e-57
AOH62254.1|2667675_2667981_+|terminase	phage terminase small subunit P27 family	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
AOH60480.1|2667970_2669662_+|terminase	terminase large subunit	terminase	A0A1X9IGU0	Staphylococcus_phage	100.0	0.0e+00
AOH61381.1|2669666_2670905_+|portal	phage portal protein	portal	A0A2I6PER5	Staphylococcus_phage	100.0	6.9e-235
AOH61637.1|2670888_2671662_+|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
AOH60299.1|2671673_2672837_+|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
AOH61105.1|2672905_2673184_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
AOH60710.1|2673195_2673528_+	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
AOH60317.1|2673524_2673926_+	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
AOH61066.1|2673926_2674322_+	DUF3168 domain-containing protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
AOH61934.1|2674356_2674998_+|tail	phage tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
AOH60958.1|2675089_2675545_+|tail	phage tail protein	tail	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
AOH62167.1|2675602_2675953_+	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
AOH62433.1|2675994_2676153_+	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
AOH62833.2|2676166_2682367_+|tail	phage tail tape measure protein	tail	A0A1X9IGU9	Staphylococcus_phage	99.7	0.0e+00
AOH60762.1|2682366_2683191_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
AVG21311.1|2683199_2684783_+	peptidase	NA	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
AOH62691.1|2684782_2685073_+	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
AOH60989.1|2685088_2686999_+	hypothetical protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
AVG21312.1|2686998_2688465_+	DUF2479 domain-containing protein	NA	A0A2I6PES7	Staphylococcus_phage	100.0	1.5e-273
AOH61579.1|2688464_2688854_+	hypothetical protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
AOH60496.1|2688846_2689011_+	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
AOH63029.1|2689056_2689356_+	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
AOH61761.1|2689491_2689794_+|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
AVG21313.1|2689804_2691259_+	CHAP domain-containing protein	NA	A0A2I6PET7	Staphylococcus_phage	100.0	5.7e-289
AOH61023.1|2691648_2692587_+	Panton-Valentine bi-component leukocidin subunit S	NA	A0A2I6PER8	Staphylococcus_phage	100.0	3.7e-180
AOH61991.2|2692582_2693566_+	Panton-Valentine bi-component leukocidin subunit F	NA	A0A2I6PEU3	Staphylococcus_phage	100.0	4.0e-185
AOH62242.2|2693748_2694000_+	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	2.4e-25
2693666:2693686	attR	AGGGCAAAAAAAGGGCGGATT	NA	NA	NA	NA
>prophage 1
CP016857	Staphylococcus aureus subsp. aureus strain 1971.C01 plasmid p1971.C01c, complete sequence	37941	10133	17147	37941	transposase	Staphylococcus_phage(50.0%)	9	NA	NA
AVG21373.1|10133_10712_+	HTH domain-containing protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.7	4.9e-42
AVG21374.1|10934_11120_-	hypothetical protein	NA	NA	NA	NA	NA
AOH60231.1|11381_12056_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9SKD3	Staphylococcus_phage	99.6	6.8e-128
AOH60240.1|12385_13180_-	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
AOH60233.2|13272_13803_-	streptothricin N-acetyltransferase Sat4	NA	A0A1B0RXL7	Streptococcus_phage	94.4	4.3e-85
AOH60253.1|14575_15250_-|transposase	IS6 family transposase	transposase	A0A0N9SKD3	Staphylococcus_phage	98.7	2.6e-127
AOH60243.1|15279_15483_-	UDP kinase	NA	NA	NA	NA	NA
AOH60237.2|15496_16234_-	ABC transporter permease	NA	NA	NA	NA	NA
AVG21375.1|16226_17147_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	42.2	1.0e-41
