assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_001717645.3_ASM171764v3	CP016855	Staphylococcus aureus subsp. aureus strain 5118.N chromosome, complete genome	1	41702-41780	1	CRISPRCasFinder	no	DEDDh	DEDDh,csa3,cas3,DinG,WYL	Unclear	TGCAGGTTGGCGGGGCCCCAACA	23	1	6	41725-41757|41725-41757|41725-41757|41725-41757|41725-41757|41725-41757	CP016855.2_420129-420161|CP016855.2_689482-689450|CP016855.2_897607-897575|CP016855.2_1221651-1221683|CP016855.2_2280041-2280073|CP016855.2_599252-599284	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|31aa|up_7|CP016855.2_36308_36401_+,NA|37aa|up_3|CP016855.2_39406_39517_+,NA|138aa|up_2|CP016855.2_39545_39959_+,NA|71aa|up_1|CP016855.2_40220_40433_+,NA|129aa|down_1|CP016855.2_42937_43324_+,NA|92aa|down_6|CP016855.2_47309_47585_-	NA|357aa|up_9|CP016855.2_34401_35472_+	PRK02406, PRK02406, DNA polymerase IV; Validated	DEDDh|185aa|up_8|CP016855.2_35539_36094_-	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|31aa|up_7|CP016855.2_36308_36401_+	NA	NA|167aa|up_6|CP016855.2_36482_36983_-	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|438aa|up_5|CP016855.2_37274_38588_+	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|244aa|up_4|CP016855.2_38589_39321_+	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|37aa|up_3|CP016855.2_39406_39517_+	NA	NA|138aa|up_2|CP016855.2_39545_39959_+	NA	NA|71aa|up_1|CP016855.2_40220_40433_+	NA	NA|329aa|up_0|CP016855.2_40448_41435_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|253aa|down_0|CP016855.2_41962_42721_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|129aa|down_1|CP016855.2_42937_43324_+	NA	NA|234aa|down_2|CP016855.2_43338_44040_+	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|348aa|down_3|CP016855.2_44036_45080_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|210aa|down_4|CP016855.2_45069_45699_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|406aa|down_5|CP016855.2_45814_47032_-	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|92aa|down_6|CP016855.2_47309_47585_-	NA	NA|155aa|down_7|CP016855.2_47591_48056_-	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|67aa|down_8|CP016855.2_48202_48403_+	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|419aa|down_9|CP016855.2_48405_49662_+	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)
GCA_001717645.3_ASM171764v3	CP016855	Staphylococcus aureus subsp. aureus strain 5118.N chromosome, complete genome	2	1115328-1115636	1,2	CRT,CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCAACTTGCANNNTNTNNNNAGCTGNCTTT,CCAGCCTCTGTGTTGGGGCCCCG	30,23	3	4	1115441-1115466|1115441-1115466|1115555-1115580|1115581-1115613	CP016855.2_1221663-1221638|CP016855.2_1680599-1680624|CP016855.2_1258812-1258837|CP016855.2_1178091-1178059	NA:NA	4,1	4	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|301aa|up_9|CP016855.2_1099452_1100355_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1218aa|up_8|CP016855.2_1100520_1104174_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1159aa|up_7|CP016855.2_1104174_1107651_-	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|192aa|up_6|CP016855.2_1107810_1108386_-	TIGR02227, Inactive_signal_peptidase_IA	NA|175aa|up_5|CP016855.2_1108401_1108926_-	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_4|CP016855.2_1108930_1109506_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|444aa|up_3|CP016855.2_1109830_1111162_-	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|402aa|up_2|CP016855.2_1111512_1112718_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|460aa|up_1|CP016855.2_1112707_1114087_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|310aa|up_0|CP016855.2_1114328_1115258_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|415aa|down_0|CP016855.2_1115760_1117005_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_1|CP016855.2_1117113_1118304_-	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|376aa|down_2|CP016855.2_1118611_1119739_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|126aa|down_3|CP016855.2_1120100_1120478_-	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|198aa|down_4|CP016855.2_1120893_1121487_-	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|128aa|down_5|CP016855.2_1121550_1121934_+	pfam08810, KapB, Kinase associated protein B	NA|802aa|down_6|CP016855.2_1122064_1124470_+	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|143aa|down_7|CP016855.2_1124462_1124891_+	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|110aa|down_8|CP016855.2_1124902_1125232_+	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|499aa|down_9|CP016855.2_1125224_1126721_+	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed
GCA_001717645.3_ASM171764v3	CP016855	Staphylococcus aureus subsp. aureus strain 5118.N chromosome, complete genome	3	1178339-1178420	3	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	2	1178363-1178396|1178363-1178396	CP016855.2_599297-599330|CP016855.2_689437-689404	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|38aa|up_0|CP016855.2_1177991_1178105_-,NA|38aa|down_1|CP016855.2_1179403_1179517_-	NA|153aa|up_9|CP016855.2_1170898_1171357_+	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|243aa|up_8|CP016855.2_1171373_1172102_+	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|up_7|CP016855.2_1172125_1172854_+	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|407aa|up_6|CP016855.2_1172941_1174162_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|274aa|up_5|CP016855.2_1174304_1175126_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_4|CP016855.2_1175143_1175839_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_3|CP016855.2_1175831_1176857_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_2|CP016855.2_1177106_1177403_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_1|CP016855.2_1177395_1177782_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|38aa|up_0|CP016855.2_1177991_1178105_-	NA	NA|293aa|down_0|CP016855.2_1178523_1179402_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_1|CP016855.2_1179403_1179517_-	NA	NA|127aa|down_2|CP016855.2_1179580_1179961_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_3|CP016855.2_1180118_1180475_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_4|CP016855.2_1180618_1180939_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_5|CP016855.2_1181088_1181628_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_6|CP016855.2_1181710_1182427_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_7|CP016855.2_1182574_1182997_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_8|CP016855.2_1183395_1183890_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_9|CP016855.2_1184044_1184662_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]
GCA_001717645.3_ASM171764v3	CP016855	Staphylococcus aureus subsp. aureus strain 5118.N chromosome, complete genome	4	1214307-1214399	4	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	AGTTGGGGTGGGGCCCCAACATAGTGAAATTGG	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|153aa|up_6|CP016855.2_1205836_1206295_-,NA|70aa|down_6|CP016855.2_1221574_1221784_+	NA|791aa|up_9|CP016855.2_1202274_1204647_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|247aa|up_8|CP016855.2_1204680_1205421_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|78aa|up_7|CP016855.2_1205536_1205770_-	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|153aa|up_6|CP016855.2_1205836_1206295_-	NA	NA|435aa|up_5|CP016855.2_1206634_1207939_-	PRK00077, eno, enolase; Provisional	NA|506aa|up_4|CP016855.2_1208068_1209586_-	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|254aa|up_3|CP016855.2_1209588_1210350_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|up_2|CP016855.2_1210471_1211662_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|up_1|CP016855.2_1211800_1212811_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|338aa|up_0|CP016855.2_1212863_1213877_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|210aa|down_0|CP016855.2_1214636_1215266_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|301aa|down_1|CP016855.2_1215967_1216870_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|down_2|CP016855.2_1217112_1217700_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|down_3|CP016855.2_1218273_1219218_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|down_4|CP016855.2_1219327_1220323_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|down_5|CP016855.2_1220319_1221231_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|70aa|down_6|CP016855.2_1221574_1221784_+	NA	NA|312aa|down_7|CP016855.2_1222110_1223046_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|down_8|CP016855.2_1223112_1224552_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|down_9|CP016855.2_1224559_1225045_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins
GCA_001717645.3_ASM171764v3	CP016855	Staphylococcus aureus subsp. aureus strain 5118.N chromosome, complete genome	6	1397522-1397614	6	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TAGCATCCAACTGCGTTCCTCTTCATCTTTAG	32	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|239aa|up_5|CP016855.2_1392389_1393106_-,NA|169aa|up_4|CP016855.2_1393267_1393774_-,NA|82aa|down_1|CP016855.2_1398602_1398848_+,NA|36aa|down_4|CP016855.2_1401021_1401129_-	NA|168aa|up_9|CP016855.2_1388071_1388575_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|179aa|up_8|CP016855.2_1388555_1389092_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|125aa|up_7|CP016855.2_1390807_1391182_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_6|CP016855.2_1391432_1392221_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_5|CP016855.2_1392389_1393106_-	NA	NA|169aa|up_4|CP016855.2_1393267_1393774_-	NA	NA|267aa|up_3|CP016855.2_1393909_1394710_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|CP016855.2_1394693_1395413_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|317aa|up_1|CP016855.2_1395467_1396418_-	pfam01032, FecCD, FecCD transport family	NA|276aa|up_0|CP016855.2_1396565_1397393_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|CP016855.2_1397831_1398467_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|82aa|down_1|CP016855.2_1398602_1398848_+	NA	NA|554aa|down_2|CP016855.2_1398854_1400516_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|128aa|down_3|CP016855.2_1400512_1400896_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|36aa|down_4|CP016855.2_1401021_1401129_-	NA	NA|337aa|down_5|CP016855.2_1401203_1402214_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|174aa|down_6|CP016855.2_1402712_1403234_-	pfam08741, YwhD, YwhD family	NA|432aa|down_7|CP016855.2_1403261_1404557_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_8|CP016855.2_1404596_1405073_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_9|CP016855.2_1405241_1405778_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]
GCA_001717645.3_ASM171764v3	CP016855	Staphylococcus aureus subsp. aureus strain 5118.N chromosome, complete genome	7	1641857-1641958	7	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|179aa|up_7|CP016855.2_1633475_1634012_+,NA|221aa|up_1|CP016855.2_1640103_1640766_+,NA|86aa|down_0|CP016855.2_1642165_1642423_+,NA|34aa|down_1|CP016855.2_1642630_1642732_-,NA|98aa|down_6|CP016855.2_1647719_1648013_+,NA|128aa|down_8|CP016855.2_1648966_1649350_+	NA|91aa|up_9|CP016855.2_1631707_1631980_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|235aa|up_8|CP016855.2_1632378_1633083_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|179aa|up_7|CP016855.2_1633475_1634012_+	NA	NA|514aa|up_6|CP016855.2_1634124_1635666_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|CP016855.2_1635690_1637157_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|CP016855.2_1637194_1638463_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|CP016855.2_1638462_1639041_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|CP016855.2_1639553_1639961_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|CP016855.2_1640103_1640766_+	NA	NA|319aa|up_0|CP016855.2_1640883_1641840_+	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|86aa|down_0|CP016855.2_1642165_1642423_+	NA	NA|34aa|down_1|CP016855.2_1642630_1642732_-	NA	NA|463aa|down_2|CP016855.2_1642816_1644205_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_3|CP016855.2_1644285_1645041_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_4|CP016855.2_1645532_1646102_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_5|CP016855.2_1646117_1647641_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|98aa|down_6|CP016855.2_1647719_1648013_+	NA	NA|209aa|down_7|CP016855.2_1648085_1648712_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_8|CP016855.2_1648966_1649350_+	NA	NA|194aa|down_9|CP016855.2_1649415_1649997_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
GCA_001717645.3_ASM171764v3	CP016855	Staphylococcus aureus subsp. aureus strain 5118.N chromosome, complete genome	8	2114601-2114774	1,8	PILER-CR,CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGGAAAG,TTACAATAATGTGCAAGTTGGCGG	40,24	2	20	2114654-2114670|2114654-2114670|2114654-2114670|2114654-2114670|2114654-2114670|2114724-2114739|2114724-2114739|2114724-2114739|2114724-2114739|2114724-2114739|2114724-2114739|2114724-2114739|2114724-2114739|2114724-2114739|2114724-2114739|2114724-2114739|2114724-2114739|2114724-2114739|2114724-2114739|2114724-2114739	CP016855.2_1227088-1227104|CP016855.2_1227143-1227159|CP016855.2_1227198-1227214|CP016855.2_1758355-1758339|CP016854.2_38043-38027|CP016855.2_30820-30835|CP016855.2_30878-30893|CP016855.2_599269-599284|CP016855.2_685053-685068|CP016855.2_689465-689450|CP016855.2_897590-897575|CP016855.2_998203-998218|CP016855.2_1178066-1178081|CP016855.2_1680594-1680579|CP016855.2_2280058-2280073|CP016855.2_241583-241568|CP016855.2_420146-420161|CP016855.2_643397-643412|CP016855.2_901558-901543|CP016855.2_2466534-2466549	NA:NA	2,1	2	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|60aa|up_1|CP016855.2_2111560_2111740_+,NA	NA|205aa|up_9|CP016855.2_2105278_2105893_+	PRK13584, hisG, ATP phosphoribosyltransferase	NA|417aa|up_8|CP016855.2_2105885_2107136_+	PRK13770, PRK13770, histidinol dehydrogenase; Provisional	NA|338aa|up_7|CP016855.2_2107151_2108165_+	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]	NA|193aa|up_6|CP016855.2_2108133_2108712_+	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase	NA|193aa|up_5|CP016855.2_2108708_2109287_+	PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|235aa|up_4|CP016855.2_2109279_2109984_+	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional	NA|253aa|up_3|CP016855.2_2109980_2110739_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|211aa|up_2|CP016855.2_2110735_2111368_+	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|60aa|up_1|CP016855.2_2111560_2111740_+	NA	NA|681aa|up_0|CP016855.2_2112460_2114503_+	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|351aa|down_0|CP016855.2_2114949_2116002_-	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]	NA|291aa|down_1|CP016855.2_2115988_2116861_-	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase	NA|102aa|down_2|CP016855.2_2116857_2117163_-	TIGR03932, IcaD_partial, intracellular adhesion protein D	NA|413aa|down_3|CP016855.2_2117126_2118365_-	TIGR03937, Poly-beta-16-N-acetyl-D-glucosamine_synthase, poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA|187aa|down_4|CP016855.2_2118528_2119089_+	pfam18665, TetR_C_37, Tetracyclin repressor-like, C-terminal domain	NA|221aa|down_5|CP016855.2_2119936_2120599_+	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|231aa|down_6|CP016855.2_2120615_2121308_+	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|256aa|down_7|CP016855.2_2121304_2122072_+	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|167aa|down_8|CP016855.2_2122306_2122807_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|159aa|down_9|CP016855.2_2122809_2123286_+	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase
GCA_001717645.3_ASM171764v3	CP016855	Staphylococcus aureus subsp. aureus strain 5118.N chromosome, complete genome	9	2555713-2555906	2	CRT	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	3	13	2555736-2555768|2555736-2555768|2555736-2555768|2555736-2555768|2555792-2555827|2555792-2555827|2555792-2555827|2555792-2555827|2555851-2555883|2555851-2555883|2555851-2555883|2555851-2555883|2555851-2555883	CP016855.2_689482-689450|CP016855.2_897607-897575|CP016855.2_1221651-1221683|CP016855.2_2280041-2280073|CP016855.2_897663-897628|CP016855.2_241714-241679|CP016855.2_30919-30954|CP016855.2_420187-420222|CP016855.2_599252-599284|CP016855.2_689482-689450|CP016855.2_897607-897575|CP016855.2_1221651-1221683|CP016855.2_2280041-2280073	NA	3	3	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|57aa|down_0|CP016855.2_2555965_2556136_-,NA|84aa|down_5|CP016855.2_2559275_2559527_-,NA|106aa|down_8|CP016855.2_2564651_2564969_-,NA|55aa|down_9|CP016855.2_2565213_2565378_-	NA|202aa|up_9|CP016855.2_2548607_2549213_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|CP016855.2_2549382_2550387_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|CP016855.2_2550417_2550924_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|CP016855.2_2550925_2551420_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|CP016855.2_2551482_2552742_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|CP016855.2_2552738_2553224_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|CP016855.2_2553237_2553684_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|CP016855.2_2553689_2553923_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|CP016855.2_2553929_2554529_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|CP016855.2_2554548_2555571_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|57aa|down_0|CP016855.2_2555965_2556136_-	NA	NA|117aa|down_1|CP016855.2_2556261_2556612_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|CP016855.2_2556713_2557925_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|CP016855.2_2557917_2558358_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|CP016855.2_2558519_2559284_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|CP016855.2_2559275_2559527_-	NA	NA|422aa|down_6|CP016855.2_2559915_2561181_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|CP016855.2_2561297_2564465_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|CP016855.2_2564651_2564969_-	NA	NA|55aa|down_9|CP016855.2_2565213_2565378_-	NA
GCA_001717645.3_ASM171764v3	CP016855	Staphylococcus aureus subsp. aureus strain 5118.N chromosome, complete genome	10	2679696-2679846	9	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL	Type I-A	TGCATAAGAGCCCCTAACAACTAAAGTT	28	0	0	NA	NA	NA	2	2	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|31aa|up_3|CP016855.2_2677055_2677148_-,NA|35aa|up_0|CP016855.2_2679259_2679364_+,NA|364aa|down_0|CP016855.2_2679863_2680955_-,NA|77aa|down_5|CP016855.2_2684743_2684974_+	NA|145aa|up_9|CP016855.2_2667774_2668209_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_8|CP016855.2_2668220_2670353_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_7|CP016855.2_2670387_2671926_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_6|CP016855.2_2672606_2674412_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_5|CP016855.2_2674643_2675426_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_4|CP016855.2_2675493_2676351_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|31aa|up_3|CP016855.2_2677055_2677148_-	NA	NA|379aa|up_2|CP016855.2_2677436_2678573_+	pfam02037, SAP, SAP domain	NA|68aa|up_1|CP016855.2_2678631_2678835_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|35aa|up_0|CP016855.2_2679259_2679364_+	NA	NA|364aa|down_0|CP016855.2_2679863_2680955_-	NA	NA|327aa|down_1|CP016855.2_2681220_2682201_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|CP016855.2_2682202_2682523_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|CP016855.2_2682674_2683340_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|CP016855.2_2683774_2684713_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|CP016855.2_2684743_2684974_+	NA	NA|458aa|down_6|CP016855.2_2685645_2687019_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|CP016855.2_2687476_2687890_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|CP016855.2_2688089_2688533_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|CP016855.2_2688653_2689364_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
