The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP016855	Staphylococcus aureus subsp. aureus strain 5118.N chromosome, complete genome	2873063	51731	126644	2873063	transposase,holin,portal,plate,capsid,head,integrase,tail,tRNA,terminase	Staphylococcus_phage(72.31%)	89	43570:43587	70749:70766
43570:43587	attL	ATCATCATCTTGTTCGTC	NA	NA	NA	NA
AOH71161.2|51731_52778_-|integrase	site-specific integrase	integrase	Q4ZE08	Staphylococcus_virus	100.0	4.2e-201
AOH69914.1|52988_53669_-	hypothetical protein	NA	A0A2H4PQQ5	Staphylococcus_phage	100.0	5.1e-123
AOH70145.2|53808_53976_-	hypothetical protein	NA	Q4ZDJ4	Staphylococcus_virus	98.2	2.5e-23
AOH71468.1|54045_54765_-	XRE family transcriptional regulator	NA	A0A2H4PQQ2	Staphylococcus_phage	100.0	1.3e-132
AOH72334.1|54907_55126_+	XRE family transcriptional regulator	NA	Q8SDX1	Staphylococcus_phage	100.0	2.9e-35
AOH70038.1|55141_55933_+	phage antirepressor	NA	Q8SDX0	Staphylococcus_phage	99.6	3.2e-145
AOH69907.1|55933_56158_+	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
AOH72027.1|56197_56341_+	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
AOH70571.1|56350_57004_-	hypothetical protein	NA	Q4ZBF5	Staphylococcus_virus	99.5	1.3e-115
AOH71259.1|57074_57296_+	hypothetical protein	NA	B2ZYU8	Staphylococcus_phage	100.0	8.7e-32
AVG20101.1|57288_57450_+	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
AOH69834.1|57538_57856_+	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	100.0	3.9e-33
AOH70869.2|57788_58121_+	DUF1108 domain-containing protein	NA	A0A2I6PDT0	Staphylococcus_phage	100.0	2.9e-55
AOH72387.1|58130_58352_+	DUF2483 domain-containing protein	NA	A7TWM6	Staphylococcus_phage	100.0	3.2e-34
AOH71448.1|58344_59133_+	chromosomal replication initiator DnaA	NA	Q4ZBM5	Staphylococcus_phage	100.0	2.6e-142
AOH70432.1|59161_59713_+	single-stranded DNA-binding protein	NA	Q4ZBM4	Staphylococcus_phage	100.0	3.4e-101
AOH70126.1|59725_60391_+	hypothetical protein	NA	Q8SDW3	Staphylococcus_phage	99.5	4.1e-125
AOH70841.1|60390_61173_+	AP2 domain-containing protein	NA	A0A2I6PDA5	Staphylococcus_phage	98.0	5.3e-140
AOH71591.1|61144_61948_+	replication protein	NA	A0A2H4JCF5	uncultured_Caudovirales_phage	99.6	2.5e-121
AOH72305.1|61957_62737_+	DNA replication protein DnaC	NA	A0A1X9H042	Staphylococcus_phage	100.0	1.4e-145
AOH71960.1|62904_63126_+	DUF3269 domain-containing protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
AOH70598.1|63135_63540_+	DUF1064 domain-containing protein	NA	Q4ZDQ2	Staphylococcus_virus	99.3	1.5e-66
AOH72542.1|63544_63730_+	hypothetical protein	NA	A0A0F6N3K7	Staphylococcus_phage	100.0	1.1e-27
AOH71921.1|63730_64036_+	hypothetical protein	NA	A0A0F6N4H9	Staphylococcus_phage	100.0	1.7e-49
AOH70554.1|64163_64520_+	hypothetical protein	NA	A0A0F6N3E3	Staphylococcus_phage	100.0	6.5e-61
AOH71044.1|64523_64766_+	hypothetical protein	NA	A0A0F6N3E1	Staphylococcus_phage	100.0	6.6e-41
AOH72245.1|64780_65032_+	DUF1024 domain-containing protein	NA	A0A1W6JPK6	Staphylococcus_phage	97.6	3.5e-37
AOH72009.1|65195_65477_+	hypothetical protein	NA	A0A2I6PDX3	Staphylococcus_phage	100.0	8.5e-48
AOH70603.1|65653_66190_+	dUTPase	NA	E0Y3R2	Staphylococcus_virus	65.7	2.0e-58
AOH70276.1|66226_66415_+	DUF1381 domain-containing protein	NA	A0A2I6PDV0	Staphylococcus_phage	100.0	2.1e-26
AOH71038.1|66389_66590_+	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
AOH70678.2|66577_66766_+	transcriptional regulator	NA	Q77FU4	Staphylococcus_phage	100.0	5.1e-25
AOH71166.1|66766_66913_+	hypothetical protein	NA	A0A059T5A8	Staphylococcus_phage	100.0	2.2e-15
AOH70729.1|66936_67359_+	transcriptional regulator	NA	Q8SDV1	Staphylococcus_phage	100.0	1.6e-74
AOH69923.2|67545_67986_+|terminase	terminase small subunit	terminase	Q8SDV0	Staphylococcus_phage	100.0	2.8e-74
AOH72357.1|67972_69250_+|terminase	PBSX family phage terminase large subunit	terminase	A0EWS5	Staphylococcus_virus	99.8	5.1e-249
AOH70961.1|69260_70796_+|portal	phage portal protein	portal	Q4ZDN2	Staphylococcus_virus	98.4	3.0e-288
70749:70766	attR	GACGAACAAGATGATGAT	NA	NA	NA	NA
AOH72053.1|70802_71798_+|head	phage head morphogenesis protein	head	B2ZYY2	Staphylococcus_phage	100.0	3.4e-184
AOH71575.1|71870_72041_+	hypothetical protein	NA	B2ZYY3	Staphylococcus_phage	100.0	6.7e-24
AOH69787.1|72149_72770_+	DUF4355 domain-containing protein	NA	B2ZYY4	Staphylococcus_phage	97.6	3.1e-74
AOH71302.1|72783_73758_+|capsid	phage major capsid protein	capsid	S4V686	Staphylococcus_phage	100.0	1.7e-183
AOH72129.2|73779_74067_+	hypothetical protein	NA	Q8SDU4	Staphylococcus_phage	100.0	6.2e-46
AOH71749.1|74075_74408_+|head,tail	phage head-tail adapter protein	head,tail	A0A0F6N3F4	Staphylococcus_phage	100.0	5.5e-54
AVG20102.1|74404_74707_+	hypothetical protein	NA	A4ZFB6	Staphylococcus_virus	100.0	1.1e-50
AOH71087.1|74706_75054_+	hypothetical protein	NA	A0A0F6N3F5	Staphylococcus_phage	100.0	4.1e-60
AOH71737.1|75065_75449_+	hypothetical protein	NA	Q8SDU1	Staphylococcus_phage	99.2	1.0e-67
AOH72433.1|75467_76049_+|tail	phage major tail protein, TP901-1 family	tail	Q4ZDE5	Staphylococcus_virus	100.0	8.3e-106
AOH72096.1|76110_76476_+|tail	phage tail protein	tail	Q8SDT9	Staphylococcus_phage	100.0	2.8e-59
AOH72037.1|76505_76850_+	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
AOH71122.1|76866_80331_+	hypothetical protein	NA	Q4ZDL9	Staphylococcus_virus	93.8	1.0e-259
AOH72397.1|80343_81291_+|tail	phage tail family protein	tail	E0Y3M0	Staphylococcus_virus	99.4	1.4e-182
AOH70497.1|81299_83201_+	peptidase	NA	Q8SDT5	Staphylococcus_phage	100.0	0.0e+00
AOH70793.1|83215_85126_+	hypothetical protein	NA	Q4ZDU1	Staphylococcus_virus	98.7	0.0e+00
AOH71320.1|85125_86949_+|plate	phage baseplate upper protein	plate	W5R8J5	Staphylococcus_phage	95.2	8.2e-277
AOH70150.1|86948_87326_+	DUF2977 domain-containing protein	NA	W5R9M2	Staphylococcus_phage	99.2	3.4e-60
AOH72038.2|87335_87509_+	XkdX family protein	NA	B2ZZ00	Staphylococcus_phage	100.0	1.0e-27
AOH70026.1|87549_87849_+	DUF2951 domain-containing protein	NA	A0EWU6	Staphylococcus_virus	91.9	1.9e-42
AOH71767.1|87985_89884_+	CHAP domain-containing protein	NA	Q4ZDD0	Staphylococcus_virus	99.4	0.0e+00
AOH71777.1|89896_91069_+	DUF2479 domain-containing protein	NA	S4V7L6	Staphylococcus_phage	100.0	3.8e-198
AOH70953.1|91074_91470_+	hypothetical protein	NA	S4V997	Staphylococcus_phage	100.0	1.6e-68
AOH70100.1|91526_91964_+|holin	phage holin	holin	S4V690	Staphylococcus_phage	99.3	3.4e-72
AOH70494.1|91944_93390_+	CHAP domain-containing protein	NA	S4V6E6	Staphylococcus_phage	100.0	1.8e-295
AOH70477.1|94071_94686_+	hypothetical protein	NA	C8CH40	Staphylococcus_phage	100.0	1.0e-109
AVG20448.1|94798_94879_-	hypothetical protein	NA	NA	NA	NA	NA
AOH69957.1|95225_95387_+	hypothetical protein	NA	NA	NA	NA	NA
AOH71431.1|95517_96033_+	type 1 glutamine amidotransferase	NA	NA	NA	NA	NA
AOH70355.1|96373_97183_+	monofunctional glycosyltransferase	NA	NA	NA	NA	NA
AOH70885.2|97443_98262_+	regulatory protein RecX	NA	NA	NA	NA	NA
AOH71597.2|98239_98554_+	DUF1811 domain-containing protein	NA	NA	NA	NA	NA
AOH71799.1|98568_100086_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AOH70978.1|100094_100931_+	hypothetical protein	NA	NA	NA	NA	NA
AVG20103.1|100857_101088_-	hypothetical protein	NA	NA	NA	NA	NA
AOH70784.1|101191_102169_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
AOH71479.1|102320_103358_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AOH72359.2|103659_104202_+	DUF402 domain-containing protein	NA	NA	NA	NA	NA
AOH70644.1|104492_106229_+	multidrug ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.4	1.7e-53
AVG20104.1|106237_106330_+	hypothetical protein	NA	NA	NA	NA	NA
AOH70754.2|106419_107514_-	aromatic acid exporter family protein	NA	NA	NA	NA	NA
AOH72549.1|107806_109096_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
AOH70890.1|109176_109632_+	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA	NA
AOH70031.1|109637_110588_+	hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
AOH70965.1|110684_111131_+	transcriptional repressor	NA	NA	NA	NA	NA
AVG20105.1|119455_119569_-	hypothetical protein	NA	NA	NA	NA	NA
AOH71818.1|119704_120907_-|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
AOH72455.1|121399_122461_+	hypothetical protein	NA	NA	NA	NA	NA
AOH69818.1|122718_124176_+	ABC transporter permease	NA	NA	NA	NA	NA
AOH72538.2|124162_124891_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
AOH70274.2|125026_126169_+	epoxyqueuosine reductase	NA	NA	NA	NA	NA
AOH71124.1|126173_126644_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
>prophage 2
CP016855	Staphylococcus aureus subsp. aureus strain 5118.N chromosome, complete genome	2873063	157304	220761	2873063	protease,bacteriocin,transposase	Staphylococcus_phage(96.23%)	67	NA	NA
AOH71612.1|157304_158240_+	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
AOH71426.1|158241_159225_+	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	98.8	1.2e-184
AVG20112.1|159466_159610_+	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
AVG20113.1|159711_159903_-	hypothetical protein	NA	NA	NA	NA	NA
AOH70967.1|160346_160490_+	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
AOH71548.1|160554_163548_+|bacteriocin	bacteriocin biosynthesis protein	bacteriocin	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
AOH71703.1|163540_164785_+	lanthionine synthetase	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
AOH70357.1|164800_165319_+	enterotoxin	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
AOH72283.1|165328_166702_+	peptidase S8	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
AOH72046.1|166724_167417_+	lantibiotic ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
AOH72226.1|167413_168175_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
AOH71135.2|168171_168870_+	BsaG protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
AOH70993.1|169343_169910_-	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
AVG20114.1|170220_170439_+	hypothetical protein	NA	NA	NA	NA	NA
AOH72055.1|170874_171582_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
AOH71872.1|171706_172429_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
AOH71250.1|172486_173206_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
AOH70738.1|173326_174046_+|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
AVG20115.1|173994_174102_-	hypothetical protein	NA	NA	NA	NA	NA
AOH70103.1|174203_174920_+|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
AOH72109.1|175070_175790_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
AVG20116.1|175854_175989_+	hypothetical protein	NA	NA	NA	NA	NA
AOH72286.2|175969_177709_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.0	8.4e-287
AVG20117.1|177701_178901_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
AVG20118.1|179750_183863_+	ATP-binding protein	NA	A0A2H4PQT3	Staphylococcus_phage	100.0	0.0e+00
AOH72551.2|184401_184761_+	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
AVG20119.1|185108_185210_-	hypothetical protein	NA	NA	NA	NA	NA
AOH71839.1|185630_185774_+	hypothetical protein	NA	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
AVG20120.1|185976_186186_+|transposase	transposase	transposase	A0A2H4PQV6	Staphylococcus_phage	100.0	1.4e-31
AOH72541.1|186377_186761_+	hypothetical protein	NA	NA	NA	NA	NA
AOH70003.1|186771_186948_+	hypothetical protein	NA	NA	NA	NA	NA
AOH70854.1|186949_187135_+	hypothetical protein	NA	NA	NA	NA	NA
AOH71586.2|187248_187890_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
AOH72390.1|188107_188659_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
AOH71916.1|188756_189101_-	DUF3969 domain-containing protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
AOH69866.1|189141_189612_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	80.1	7.0e-63
AOH71065.1|189843_190839_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
AOH72413.2|190919_191570_-	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
AOH71672.2|191872_192328_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
AOH71514.1|192486_193965_+	2-succinylbenzoate-CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
AOH71020.1|193969_194971_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
AOH71067.1|194967_195225_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
AOH71410.2|195290_195764_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
AOH72256.2|195768_196515_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
AOH70208.1|197510_199103_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
AOH71268.1|199473_200667_+	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
AOH72175.1|200791_201700_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
AOH71700.1|201911_202745_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
AOH71572.1|204840_205194_-	camphor resistance protein CrcB	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
AOH70141.1|205190_205556_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	1.4e-58
AVG20121.1|205811_206114_-	hypothetical protein	NA	NA	NA	NA	NA
AOH69906.1|206373_207087_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
AOH71382.1|207526_208162_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AOH69815.1|208457_208901_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
AVG20122.1|208887_209331_-	competence protein ComK	NA	NA	NA	NA	NA
AOH72532.2|209443_209914_-	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
AOH70386.1|210112_210337_+	hypothetical protein	NA	NA	NA	NA	NA
AOH71125.1|210612_211467_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
AOH70414.1|211761_212157_-	protein ArsC	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
AOH70734.1|212174_213467_-	arsenical efflux pump membrane protein ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
AVG20123.1|213466_213781_-	ArsR family transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
AOH72579.1|214303_215806_+	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
AOH70512.2|216298_217330_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	4.8e-197
AOH70517.1|217336_217969_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
AOH70618.1|217979_219161_+	riboflavin biosynthesis protein RibBA	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
AOH71256.1|219173_219638_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
AOH72511.2|219759_220761_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
>prophage 3
CP016855	Staphylococcus aureus subsp. aureus strain 5118.N chromosome, complete genome	2873063	223921	236650	2873063	tRNA	Staphylococcus_phage(100.0%)	6	NA	NA
AOH72032.1|223921_224485_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
AOH70836.1|224481_225435_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
AOH69932.1|225544_226726_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
AOH70373.2|227013_229431_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
AOH70616.1|229452_229764_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
AOH71488.1|230089_236650_+	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	2.0e-304
>prophage 4
CP016855	Staphylococcus aureus subsp. aureus strain 5118.N chromosome, complete genome	2873063	362106	371149	2873063	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
AOH70231.1|362106_363111_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
AVG20141.1|363112_364138_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AOH72163.1|364160_365300_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
AOH70118.1|365318_365579_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
AOH69970.1|365853_368133_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
AVG20142.1|368335_370609_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
AOH70689.1|370630_371149_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 5
CP016855	Staphylococcus aureus subsp. aureus strain 5118.N chromosome, complete genome	2873063	440286	448598	2873063	tRNA	Caulobacter_phage(16.67%)	7	NA	NA
AOH70577.1|440286_442086_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
AOH72341.1|442309_443416_+	RNA polymerase sigma factor SigA	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
AOH71605.1|443546_444224_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
AOH72505.1|444226_445327_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
AOH71390.1|445440_446787_+	DEAD/DEAH box family ATP-dependent RNA helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
AOH70449.2|446796_447687_+	endonuclease	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
AOH71309.2|447812_448598_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
>prophage 6
CP016855	Staphylococcus aureus subsp. aureus strain 5118.N chromosome, complete genome	2873063	988240	996713	2873063		Synechococcus_phage(33.33%)	9	NA	NA
AOH72125.2|988240_988807_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
AOH70532.1|988809_989838_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
AOH69881.1|989830_991315_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
AOH70589.1|991293_993483_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
AOH71399.1|993475_994147_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
AOH71507.1|994148_994412_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AOH72446.1|994411_995116_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
AOH72489.1|995119_996244_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AOH72372.1|996230_996713_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
>prophage 7
CP016855	Staphylococcus aureus subsp. aureus strain 5118.N chromosome, complete genome	2873063	1161029	1176857	2873063	capsid,integrase,protease,terminase	Staphylococcus_phage(66.67%)	22	1160350:1160366	1174305:1174321
1160350:1160366	attL	TTATTTAGCAGGAATAA	NA	NA	NA	NA
AOH72064.1|1161029_1161584_+	hypothetical protein	NA	A0A1W6JQE5	Staphylococcus_phage	76.1	4.8e-71
AOH69803.2|1161818_1162787_-|protease	CAAX protease	protease	A0A0H4U080	Erysipelothrix_phage	27.3	5.9e-24
AVG20458.1|1163063_1163219_-|terminase	terminase	terminase	A0A1W6JQF0	Staphylococcus_phage	92.0	3.1e-20
AOH70001.1|1163215_1163707_-	pathogenicity island protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	40.5	7.9e-25
AOH72477.1|1163890_1164949_-|capsid	phage capsid protein	capsid	A0A0K2CZ99	Paenibacillus_phage	26.6	3.6e-14
AOH71406.1|1164935_1165142_-	hypothetical protein	NA	NA	NA	NA	NA
AOH71008.1|1165366_1165711_-	pathogenicity island protein	NA	A0A1W6JQD5	Staphylococcus_phage	65.2	9.4e-41
AOH72230.1|1166381_1168754_-	DNA primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	39.3	9.8e-137
AOH72219.1|1168845_1169094_-	hypothetical protein	NA	Q4ZE75	Staphylococcus_phage	58.6	1.4e-22
AOH70773.1|1169094_1169478_-	pathogenicity island protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.9	4.4e-63
AOH70421.1|1169479_1169683_-	pathogenicity island protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
AVG20222.1|1169649_1169823_-	pathogenicity island protein	NA	NA	NA	NA	NA
AOH71027.1|1169834_1170107_-	pathogenicity island protein	NA	Q4ZE77	Staphylococcus_phage	88.9	4.8e-40
AOH70816.1|1170122_1170362_-	XRE family transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	88.6	7.7e-34
AOH70879.1|1170554_1170887_+	XRE family transcriptional regulator	NA	A0A1J0MFC1	Staphylococcus_phage	74.5	1.6e-37
AOH70966.1|1170898_1171357_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2I6PEK4	Staphylococcus_phage	82.1	4.3e-65
AOH71284.2|1171373_1172102_+	exotoxin	NA	A0EX09	Staphylococcus_phage	34.1	1.6e-26
AVG20223.1|1172125_1172854_+	exotoxin	NA	A0EX09	Staphylococcus_phage	31.8	1.2e-21
AOH72585.1|1172941_1174162_+|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.5	2.9e-100
AOH71405.2|1174304_1175126_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
1174305:1174321	attR	TTATTTAGCAGGAATAA	NA	NA	NA	NA
AOH71751.2|1175143_1175839_-	ABC transporter permease	NA	NA	NA	NA	NA
AOH70155.1|1175831_1176857_-	methionine import ATP-binding protein MetN 2	NA	G3M9Y6	Bacillus_virus	33.3	3.9e-26
>prophage 8
CP016855	Staphylococcus aureus subsp. aureus strain 5118.N chromosome, complete genome	2873063	1255622	1270353	2873063		uncultured_Caudovirales_phage(50.0%)	18	NA	NA
AOH71453.2|1255622_1256384_-	iron ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
AOH71077.2|1256380_1257337_-	iron ABC transporter permease	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
AOH72119.1|1257323_1258295_-	iron ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
AVG20238.1|1258333_1258489_-	hypothetical protein	NA	NA	NA	NA	NA
AVG20239.1|1258765_1258870_-	hypothetical protein	NA	NA	NA	NA	NA
AOH72401.1|1259002_1259974_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
AOH71009.1|1260091_1262197_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
AOH70416.1|1262159_1262558_-	protein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
AVG20240.1|1262707_1262974_-	ribonucleoside-diphosphate reductase	NA	NA	NA	NA	NA
AVG20241.1|1263358_1264225_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AVG20242.1|1264244_1264745_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
AVG20243.1|1264774_1265020_+	hypothetical protein	NA	NA	NA	NA	NA
AOH70030.1|1265085_1266591_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
AVG20244.1|1266668_1266770_-	hypothetical protein	NA	NA	NA	NA	NA
AOH71043.1|1266860_1267778_+	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
AVG20245.1|1268190_1268289_-	hypothetical protein	NA	NA	NA	NA	NA
AOH70542.1|1268401_1268944_-	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
AOH72057.1|1269294_1270353_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
>prophage 9
CP016855	Staphylococcus aureus subsp. aureus strain 5118.N chromosome, complete genome	2873063	1282325	1290145	2873063		Pandoravirus(16.67%)	10	NA	NA
AOH70825.1|1282325_1283477_-	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
AOH72047.2|1283460_1284054_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
AOH71951.1|1284404_1285073_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
AOH71884.1|1285074_1285494_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
AOH71837.1|1285497_1286211_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
AOH70495.2|1286309_1286894_+	hypothetical protein	NA	NA	NA	NA	NA
AOH71681.1|1287173_1287614_+	hypothetical protein	NA	NA	NA	NA	NA
AOH70364.1|1287955_1288429_+	DoxX family protein	NA	NA	NA	NA	NA
AOH72566.1|1288403_1289090_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AOH72031.1|1289089_1290145_+	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
>prophage 10
CP016855	Staphylococcus aureus subsp. aureus strain 5118.N chromosome, complete genome	2873063	2801634	2859876	2873063	holin,portal,protease,capsid,head,integrase,tail,terminase	Staphylococcus_phage(97.22%)	81	2815501:2815518	2840432:2840449
AOH71317.1|2801634_2802378_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AOH69837.1|2802552_2802837_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
AOH70424.1|2802912_2804529_+	molecular chaperone GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
AVG20432.1|2805230_2805443_+	pathogenicity island family protein	NA	Q4ZE86	Staphylococcus_phage	74.3	1.1e-23
AOH70821.1|2805439_2806030_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	95.8	1.1e-97
AOH72472.2|2806347_2806725_+	hypothetical protein	NA	NA	NA	NA	NA
AVG20433.1|2806889_2807333_+	N-acetyltransferase	NA	NA	NA	NA	NA
AOH71073.1|2808185_2809493_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
AOH70654.1|2809653_2810565_+	ferrichrome ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AOH72165.2|2810626_2811472_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AOH71472.1|2811843_2813067_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AOH71339.2|2813501_2814557_+	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
AOH70580.1|2814578_2815595_+	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.0	1.1e-25
2815501:2815518	attL	AAAAAGAAGAAAAATTAT	NA	NA	NA	NA
AOH70605.1|2816713_2817751_-|integrase	site-specific integrase	integrase	A0A1X9H022	Staphylococcus_phage	99.7	3.8e-178
AOH72522.2|2817941_2818655_-	toxin MazF	NA	A0A1X9H026	Staphylococcus_phage	100.0	5.0e-129
AOH71577.1|2818732_2818915_-	hypothetical protein	NA	A0A0H3U4Z4	Staphylococcus_phage	100.0	4.1e-27
AOH69880.1|2819118_2819460_-	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
AOH70293.1|2819465_2820398_-	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
AOH70378.1|2820413_2821127_-	transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	99.6	1.3e-129
AVG20434.1|2821089_2821263_+	transcriptional regulator	NA	NA	NA	NA	NA
AOH70685.1|2821259_2821523_+	XRE family transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
AOH70124.1|2821538_2821754_+	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
AOH71486.2|2821742_2822072_-	hypothetical protein	NA	A0A0H3U4Z1	Staphylococcus_phage	100.0	4.6e-53
AVG20435.1|2822122_2822875_+	oxidoreductase	NA	A0A0H3U319	Staphylococcus_phage	100.0	5.6e-139
AOH70547.2|2823063_2823294_-	hypothetical protein	NA	A0A0H3U2T9	Staphylococcus_phage	100.0	9.4e-37
AOH71232.1|2823352_2823673_+	DUF771 domain-containing protein	NA	A0A0H3U4C3	Staphylococcus_phage	100.0	1.5e-56
AOH71367.1|2823669_2823831_+	DUF1270 domain-containing protein	NA	A0A0H3U4Y7	Staphylococcus_phage	100.0	3.8e-21
AOH70536.1|2823925_2824186_+	hypothetical protein	NA	A0A0H3U2W4	Staphylococcus_phage	100.0	9.3e-41
AOH69868.1|2824225_2824486_+	DUF1108 domain-containing protein	NA	A0A0H3U2T6	Staphylococcus_phage	100.0	6.8e-44
AVG20436.1|2824494_2824758_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
AOH72255.1|2824766_2826710_+	ATPase	NA	A0A2I6PDH3	Staphylococcus_phage	94.7	0.0e+00
AOH71849.1|2826711_2827632_+	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
AOH71705.2|2827712_2828330_+	MBL fold metallo-hydrolase	NA	A0A0H3U2T4	Staphylococcus_phage	100.0	4.1e-87
AOH70862.1|2828330_2828801_+	single-stranded DNA-binding protein	NA	A0A0H3U4B5	Staphylococcus_phage	100.0	4.4e-81
AOH70801.1|2828830_2829724_+	DnaD domain protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
AOH72500.1|2829730_2829949_+	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
AOH70539.1|2829957_2830362_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A0H3U2W2	Staphylococcus_phage	100.0	1.4e-72
AOH71547.1|2830374_2830743_+	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
AOH71773.1|2830746_2830989_+	hypothetical protein	NA	A0A0H3U4B0	Staphylococcus_phage	100.0	1.1e-40
AOH70694.2|2830997_2831369_+	acetyltransferase	NA	A0A0H3U4X7	Staphylococcus_phage	97.3	4.7e-54
AOH71673.1|2831361_2831598_+	DUF1024 domain-containing protein	NA	A0A0H3U313	Staphylococcus_phage	100.0	5.3e-35
AOH70368.1|2831587_2831830_+	hypothetical protein	NA	A0A2I6PF40	Staphylococcus_phage	100.0	3.7e-36
AOH72292.1|2831822_2832356_+	dUTP pyrophosphatase	NA	A0A0H3U2T1	Staphylococcus_phage	100.0	1.6e-95
AVG20437.1|2832392_2832638_+	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
AOH71789.1|2832634_2832841_+	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
AOH71550.1|2832837_2833224_+	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
AOH70073.1|2833220_2833370_+	transcriptional regulator	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
AOH71260.1|2833369_2833570_+	hypothetical protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
AOH71667.1|2833597_2834014_+	transcriptional regulator	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
AOH69835.2|2834245_2834545_+	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
AOH69760.1|2834674_2835019_+	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
AOH70090.1|2835015_2836677_+|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
AOH71273.1|2836692_2837880_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
AOH71563.1|2837863_2838601_+|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
AOH72223.1|2838624_2839770_+|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
AOH72164.2|2839789_2840074_+	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
AOH71150.1|2840063_2840348_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
AVG20438.1|2840331_2840694_+|head,tail	phage head-tail adapter protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
2840432:2840449	attR	AAAAAGAAGAAAAATTAT	NA	NA	NA	NA
AOH72534.1|2840690_2841095_+	hypothetical protein	NA	A0A0H3U2V1	Staphylococcus_phage	100.0	8.7e-70
AVG20439.1|2841091_2841496_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	95.5	1.4e-67
AOH70901.1|2841499_2842144_+|tail	phage tail protein	tail	A0A0H3U4E6	Staphylococcus_phage	100.0	6.5e-120
AVG20440.1|2842170_2842410_+	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	94.6	4.0e-30
AOH70359.1|2842459_2842810_+	hypothetical protein	NA	A0A0H3U503	Staphylococcus_phage	100.0	1.3e-58
AOH72049.1|2843054_2847584_+|tail	phage tail tape measure protein	tail	A0A1X9H084	Staphylococcus_phage	95.0	0.0e+00
AOH71833.2|2847580_2849065_+|tail	phage tail protein	tail	A0A0H3U501	Staphylococcus_phage	100.0	2.0e-297
AOH71853.1|2849080_2852866_+	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.5	0.0e+00
AOH69802.1|2852855_2853008_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
AOH71722.1|2853054_2853342_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
AOH69926.2|2853399_2853696_+	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
AOH70702.2|2853845_2854022_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
AVG20441.1|2854074_2854182_-	hypothetical protein	NA	NA	NA	NA	NA
AOH71549.1|2854233_2854488_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
AOH70808.2|2854499_2855255_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
AOH70946.2|2855445_2855937_+	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
AVG20442.1|2856463_2856922_+	amidase	NA	R9QTN8	Staphylococcus_phage	98.7	4.9e-85
AOH70252.1|2857016_2857466_-	chemotaxis inhibitory protein	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
AOH69730.1|2858150_2858501_+	inhibitor	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
AOH70582.2|2858553_2858814_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
AVG20443.1|2858792_2859101_-	hypothetical protein	NA	M9NTD8	Staphylococcus_phage	100.0	2.1e-39
AVG20444.1|2859124_2859304_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
AOH71786.2|2859675_2859876_-	hypothetical protein	NA	A0A1P8L6A7	Staphylococcus_phage	100.0	3.4e-27
