assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_001650235.2_ASM165023v2	CP026328	Acidithiobacillus caldus strain MTH-04 chromosome, complete genome	1	1072868-1072954	1	CRISPRCasFinder	no		csa3,DEDDh,PrimPol,cas6e,cas3,DinG,Cas9_archaeal	Orphan	AAACTCTAGCCAGACTCTAGCCAG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,PrimPol,cas6e,cas3,DinG,Cas9_archaeal,cas14j,RT	NA|80aa|up_8|CP026328.1_1066075_1066315_+,NA|75aa|up_6|CP026328.1_1066924_1067149_+,NA|151aa|up_4|CP026328.1_1067705_1068158_+,NA|60aa|up_2|CP026328.1_1071765_1071945_+,NA|88aa|up_1|CP026328.1_1071962_1072226_-,NA|71aa|up_0|CP026328.1_1072372_1072585_-,NA|72aa|down_4|CP026328.1_1076314_1076530_+,NA|173aa|down_9|CP026328.1_1079807_1080326_+	NA|262aa|up_9|CP026328.1_1065293_1066079_+	COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair]	NA|80aa|up_8|CP026328.1_1066075_1066315_+	NA	NA|88aa|up_7|CP026328.1_1066373_1066637_+	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|75aa|up_6|CP026328.1_1066924_1067149_+	NA	NA|182aa|up_5|CP026328.1_1067163_1067709_+	TIGR03830, transcriptional_regulator_XRE_family, putative zinc finger/helix-turn-helix protein, YgiT family	NA|151aa|up_4|CP026328.1_1067705_1068158_+	NA	NA|1053aa|up_3|CP026328.1_1068154_1071313_+	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|60aa|up_2|CP026328.1_1071765_1071945_+	NA	NA|88aa|up_1|CP026328.1_1071962_1072226_-	NA	NA|71aa|up_0|CP026328.1_1072372_1072585_-	NA	NA|314aa|down_0|CP026328.1_1073309_1074251_+	cd09128, PLDc_unchar1_2, Putative catalytic domain, repeat 2, of uncharacterized phospholipase D-like proteins	NA|256aa|down_1|CP026328.1_1074252_1075020_+	cd07404, MPP_MS158, Microscilla MS158 and related proteins, metallophosphatase domain	NA|115aa|down_2|CP026328.1_1075242_1075587_+	TIGR02419, kDa_protein_in_gpA_5'region, phage/conjugal plasmid C-4 type zinc finger protein, TraR family	NA|169aa|down_3|CP026328.1_1075632_1076139_+	PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional	NA|72aa|down_4|CP026328.1_1076314_1076530_+	NA	NA|178aa|down_5|CP026328.1_1076604_1077138_+	cd10030, UDG-F4_TTUDGA_SPO1dp_like, Uracil DNA glycosylase family 4, includes Thermotoga maritima TTUDGA, Bacillus phage SPO1 DNA polymerase, and similar proteins	NA|104aa|down_6|CP026328.1_1077252_1077564_+	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase	NA|405aa|down_7|CP026328.1_1077690_1078905_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|139aa|down_8|CP026328.1_1079022_1079439_+	pfam10577, UPF0560, Uncharacterized protein family UPF0560	NA|173aa|down_9|CP026328.1_1079807_1080326_+	NA
GCA_001650235.2_ASM165023v2	CP026328	Acidithiobacillus caldus strain MTH-04 chromosome, complete genome	2	1113335-1113437	2	CRISPRCasFinder	no		csa3,DEDDh,PrimPol,cas6e,cas3,DinG,Cas9_archaeal	Orphan	CCCCTGCGGGGCGCAGCCCTGCCG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,PrimPol,cas6e,cas3,DinG,Cas9_archaeal,cas14j,RT	NA|456aa|up_7|CP026328.1_1101349_1102717_-,NA|102aa|up_6|CP026328.1_1106017_1106323_+,NA|131aa|up_5|CP026328.1_1106797_1107190_+,NA|278aa|up_0|CP026328.1_1112440_1113274_+,NA|115aa|down_0|CP026328.1_1113722_1114067_+,NA|151aa|down_1|CP026328.1_1114204_1114657_+,NA|338aa|down_2|CP026328.1_1114853_1115867_+,NA|62aa|down_3|CP026328.1_1116155_1116341_-,NA|87aa|down_6|CP026328.1_1119166_1119427_+,NA|164aa|down_7|CP026328.1_1119448_1119940_+,NA|112aa|down_8|CP026328.1_1120564_1120900_+,NA|232aa|down_9|CP026328.1_1120899_1121595_+	NA|177aa|up_9|CP026328.1_1099235_1099766_+	pfam07419, PilM, PilM	NA|521aa|up_8|CP026328.1_1099778_1101341_+	pfam04917, Shufflon_N, Bacterial shufflon protein, N-terminal constant region	NA|456aa|up_7|CP026328.1_1101349_1102717_-	NA	NA|102aa|up_6|CP026328.1_1106017_1106323_+	NA	NA|131aa|up_5|CP026328.1_1106797_1107190_+	NA	NA|124aa|up_4|CP026328.1_1107208_1107580_+	PRK13823, PRK13823, conjugal transfer protein TrbD; Provisional	NA|1168aa|up_3|CP026328.1_1107582_1111086_+	PRK13873, PRK13873, conjugal transfer ATPase TrbE; Provisional	NA|65aa|up_2|CP026328.1_1111412_1111607_+	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,	NA|134aa|up_1|CP026328.1_1111603_1112005_+	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system	NA|278aa|up_0|CP026328.1_1112440_1113274_+	NA	NA|115aa|down_0|CP026328.1_1113722_1114067_+	NA	NA|151aa|down_1|CP026328.1_1114204_1114657_+	NA	NA|338aa|down_2|CP026328.1_1114853_1115867_+	NA	NA|62aa|down_3|CP026328.1_1116155_1116341_-	NA	NA|260aa|down_4|CP026328.1_1116339_1117119_+	TIGR02780, TrbJ_protein, P-type conjugative transfer protein TrbJ	NA|653aa|down_5|CP026328.1_1117128_1119087_+	TIGR02783, probable_conjugal_transfer_protein_TrbL, P-type conjugative transfer protein TrbL	NA|87aa|down_6|CP026328.1_1119166_1119427_+	NA	NA|164aa|down_7|CP026328.1_1119448_1119940_+	NA	NA|112aa|down_8|CP026328.1_1120564_1120900_+	NA	NA|232aa|down_9|CP026328.1_1120899_1121595_+	NA
GCA_001650235.2_ASM165023v2	CP026328	Acidithiobacillus caldus strain MTH-04 chromosome, complete genome	3	1146369-1147431	3,1,4,1	CRISPRCasFinder,CRT,CRISPRCasFinder,PILER-CR	no	cas6e	csa3,DEDDh,PrimPol,cas6e,cas3,DinG,Cas9_archaeal	Unclear	GGTTTTCCCCCGCGCACGCGGGGACGAC,GGTTTTCCCCCGCGCACGCGGGGACGAC,GGTTTTCCCCCGCGCACGCGGGGACGAC,GGTTTTCCCCCGCGCACGCGGGGACGAC	28,28,28,28	0	0	NA	NA	I-C,I-E,II-B:I-C,I-E,II-B:I-C,I-E,II-B:I-C,I-E,II-B	15,17,15,8	17	Unclear	csa3,DEDDh,PrimPol,cas6e,cas3,DinG,Cas9_archaeal,cas14j,RT	NA|67aa|up_3|CP026328.1_1142341_1142542_-,NA|156aa|up_0|CP026328.1_1145881_1146349_+,NA|252aa|down_2|CP026328.1_1150333_1151089_-,NA|228aa|down_3|CP026328.1_1151115_1151799_-,NA|63aa|down_8|CP026328.1_1157747_1157936_-	NA|431aa|up_9|CP026328.1_1135231_1136524_+	cd16393, SPO0J_N, Thermus thermophilus stage 0 sporulation protein J-like N-terminal domain, ParB family member	NA|297aa|up_8|CP026328.1_1136438_1137329_-	pfam08346, AntA, AntA/AntB antirepressor	NA|135aa|up_7|CP026328.1_1137429_1137834_-	pfam13455, MUG113, Meiotically up-regulated gene 113	NA|406aa|up_6|CP026328.1_1137972_1139190_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|76aa|up_5|CP026328.1_1139152_1139380_-	pfam08346, AntA, AntA/AntB antirepressor	NA|860aa|up_4|CP026328.1_1139664_1142244_+	PRK13880, PRK13880, conjugal transfer coupling protein TraG; Provisional	NA|67aa|up_3|CP026328.1_1142341_1142542_-	NA	NA|194aa|up_2|CP026328.1_1143308_1143890_-	cd16892, LT_VirB1-like, VirB1-like subfamily	NA|503aa|up_1|CP026328.1_1144166_1145675_-	pfam00580, UvrD-helicase, UvrD/REP helicase N-terminal domain	NA|156aa|up_0|CP026328.1_1145881_1146349_+	NA	NA|325aa|down_0|CP026328.1_1147470_1148445_-	TIGR03115, cas7_csf2, CRISPR type IV/AFERR-associated protein Csf2	cas6e|130aa|down_1|CP026328.1_1149881_1150271_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	NA|252aa|down_2|CP026328.1_1150333_1151089_-	NA	NA|228aa|down_3|CP026328.1_1151115_1151799_-	NA	NA|508aa|down_4|CP026328.1_1153660_1155184_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|262aa|down_5|CP026328.1_1155192_1155978_+	COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair]	NA|209aa|down_6|CP026328.1_1156281_1156908_-	TIGR01509, HAD-SF-IA-v3, haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED	NA|182aa|down_7|CP026328.1_1156907_1157453_-	COG2063, FlgH, Flagellar basal body L-ring protein [Cell motility and secretion]	NA|63aa|down_8|CP026328.1_1157747_1157936_-	NA	NA|143aa|down_9|CP026328.1_1157938_1158367_-	pfam01555, N6_N4_Mtase, DNA methylase
GCA_001650235.2_ASM165023v2	CP026328	Acidithiobacillus caldus strain MTH-04 chromosome, complete genome	4	1148490-1149776	5,2,6,2	CRISPRCasFinder,CRT,CRISPRCasFinder,PILER-CR	no	cas6e	csa3,DEDDh,PrimPol,cas6e,cas3,DinG,Cas9_archaeal	Unclear	GGTTTTCCCCCGCGCACGCGGGGACGAC,GGTTTTCCCCCGCNCNCGCGGGG,GGTTTTCCCCCGCGCACGCGGGGACGAC,GGTTTTCCCCCGCACACGCGGGGACGAC	28,23,28,28	0	0	NA	NA	I-C,I-E,II-B:NA:I-C,I-E,II-B:I-C,I-E,II-B	19,21,19,3	21	Unclear	csa3,DEDDh,PrimPol,cas6e,cas3,DinG,Cas9_archaeal,cas14j,RT	NA|67aa|up_4|CP026328.1_1142341_1142542_-,NA|156aa|up_1|CP026328.1_1145881_1146349_+,NA|252aa|down_1|CP026328.1_1150333_1151089_-,NA|228aa|down_2|CP026328.1_1151115_1151799_-,NA|63aa|down_7|CP026328.1_1157747_1157936_-,NA|128aa|down_9|CP026328.1_1158996_1159380_-	NA|297aa|up_9|CP026328.1_1136438_1137329_-	pfam08346, AntA, AntA/AntB antirepressor	NA|135aa|up_8|CP026328.1_1137429_1137834_-	pfam13455, MUG113, Meiotically up-regulated gene 113	NA|406aa|up_7|CP026328.1_1137972_1139190_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|76aa|up_6|CP026328.1_1139152_1139380_-	pfam08346, AntA, AntA/AntB antirepressor	NA|860aa|up_5|CP026328.1_1139664_1142244_+	PRK13880, PRK13880, conjugal transfer coupling protein TraG; Provisional	NA|67aa|up_4|CP026328.1_1142341_1142542_-	NA	NA|194aa|up_3|CP026328.1_1143308_1143890_-	cd16892, LT_VirB1-like, VirB1-like subfamily	NA|503aa|up_2|CP026328.1_1144166_1145675_-	pfam00580, UvrD-helicase, UvrD/REP helicase N-terminal domain	NA|156aa|up_1|CP026328.1_1145881_1146349_+	NA	NA|325aa|up_0|CP026328.1_1147470_1148445_-	TIGR03115, cas7_csf2, CRISPR type IV/AFERR-associated protein Csf2	cas6e|130aa|down_0|CP026328.1_1149881_1150271_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	NA|252aa|down_1|CP026328.1_1150333_1151089_-	NA	NA|228aa|down_2|CP026328.1_1151115_1151799_-	NA	NA|508aa|down_3|CP026328.1_1153660_1155184_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|262aa|down_4|CP026328.1_1155192_1155978_+	COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair]	NA|209aa|down_5|CP026328.1_1156281_1156908_-	TIGR01509, HAD-SF-IA-v3, haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED	NA|182aa|down_6|CP026328.1_1156907_1157453_-	COG2063, FlgH, Flagellar basal body L-ring protein [Cell motility and secretion]	NA|63aa|down_7|CP026328.1_1157747_1157936_-	NA	NA|143aa|down_8|CP026328.1_1157938_1158367_-	pfam01555, N6_N4_Mtase, DNA methylase	NA|128aa|down_9|CP026328.1_1158996_1159380_-	NA
GCA_001650235.2_ASM165023v2	CP026328	Acidithiobacillus caldus strain MTH-04 chromosome, complete genome	5	1928811-1928967	7	CRISPRCasFinder	no	cas3	csa3,DEDDh,PrimPol,cas6e,cas3,DinG,Cas9_archaeal	Unclear	GAACTAGAGCCAGAACTAGAGCCAG	25	0	0	NA	NA	NA	2	2	Unclear	csa3,DEDDh,PrimPol,cas6e,cas3,DinG,Cas9_archaeal,cas14j,RT	NA|63aa|up_3|CP026328.1_1923984_1924173_+,NA|135aa|down_3|CP026328.1_1931555_1931960_-,NA|242aa|down_6|CP026328.1_1934094_1934820_+	NA|262aa|up_9|CP026328.1_1914938_1915724_+	COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair]	NA|508aa|up_8|CP026328.1_1916026_1917550_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|262aa|up_7|CP026328.1_1917558_1918344_+	COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair]	NA|461aa|up_6|CP026328.1_1918703_1920086_-	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family	NA|522aa|up_5|CP026328.1_1920124_1921690_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|328aa|up_4|CP026328.1_1921688_1922672_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|63aa|up_3|CP026328.1_1923984_1924173_+	NA	NA|168aa|up_2|CP026328.1_1924256_1924760_-	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|405aa|up_1|CP026328.1_1924874_1926089_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|405aa|up_0|CP026328.1_1926817_1928032_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|257aa|down_0|CP026328.1_1929167_1929938_-	cd16279, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo	NA|272aa|down_1|CP026328.1_1929934_1930750_-	COG0084, TatD, Mg-dependent DNase [DNA replication, recombination, and repair]	NA|251aa|down_2|CP026328.1_1930751_1931504_-	PRK11181, PRK11181, 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA|135aa|down_3|CP026328.1_1931555_1931960_-	NA	NA|344aa|down_4|CP026328.1_1932010_1933042_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|299aa|down_5|CP026328.1_1933068_1933965_-	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]	NA|242aa|down_6|CP026328.1_1934094_1934820_+	NA	NA|373aa|down_7|CP026328.1_1934832_1935951_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|455aa|down_8|CP026328.1_1935932_1937297_+	PLN02576, PLN02576, protoporphyrinogen oxidase	NA|277aa|down_9|CP026328.1_1937336_1938167_-	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD
