The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP014015	Citrobacter amalonaticus strain FDAARGOS_122, complete genome	4904719	78074	86378	4904719		Escherichia_phage(28.57%)	7	NA	NA
AMG91048.1|78074_79181_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2P1ELT3	Moumouvirus	29.1	1.4e-21
AMG91049.1|79177_80047_-	glucose-1-phosphate thymidylyltransferase	NA	A0A291LA53	Escherichia_phage	66.7	4.6e-108
AMG91050.1|80043_81132_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	50.7	5.5e-95
AMG91051.1|81134_82163_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	46.1	6.2e-72
AMG91052.1|82198_83479_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	A0A218MKK1	uncultured_virus	24.7	3.5e-08
AMG91053.1|83903_84797_-	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	40.8	2.1e-47
AMG91054.1|84974_86378_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	32.1	4.4e-20
>prophage 2
CP014015	Citrobacter amalonaticus strain FDAARGOS_122, complete genome	4904719	144409	152832	4904719	tRNA	Enterobacteria_phage(66.67%)	9	NA	NA
AMG91097.1|144409_146443_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.4	5.2e-54
AMG91098.1|146646_147105_+	DUF1307 domain-containing protein	NA	Q9EYF5	Enterobacteria_phage	66.7	1.1e-49
AMG91099.1|147150_147621_-	DUF1456 domain-containing protein	NA	Q9EYF4	Enterobacteria_phage	76.8	3.1e-63
AMG91100.1|147667_148387_-	two-component system response regulator YehT	NA	NA	NA	NA	NA
AVI00349.1|148379_150068_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.4	6.9e-278
AMG91101.1|150290_151022_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	92.5	6.8e-105
AVI00350.1|151081_151189_+	hypothetical protein	NA	NA	NA	NA	NA
AMG91102.1|151169_151901_-	ABC transporter permease	NA	NA	NA	NA	NA
AMG91103.1|151884_152832_-	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.0	1.2e-08
>prophage 3
CP014015	Citrobacter amalonaticus strain FDAARGOS_122, complete genome	4904719	2411700	2419373	4904719		Thermobifida_phage(16.67%)	10	NA	NA
AMG92988.1|2411700_2412555_-	RNase adaptor protein RapZ	NA	A0A0R8VB27	Thermobifida_phage	28.4	1.4e-05
AMG92989.1|2412588_2413080_-	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA	NA
AMG92990.1|2413195_2413483_-	ribosome hibernation promoting factor	NA	A0A0M7QCF2	Escherichia_phage	43.2	4.2e-10
AMG92991.1|2413505_2414939_-	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
AMG92992.1|2414986_2415712_-	lipopolysaccharide ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.4	1.4e-22
AMG92993.1|2415718_2416267_-	lipopolysaccharide ABC transporter substrate-binding protein LptA	NA	NA	NA	NA	NA
AMG92994.1|2416235_2416811_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AMG92995.1|2416807_2417374_-	3-deoxy-manno-octulosonate-8-phosphatase KdsC	NA	A0A140XBD6	Dickeya_phage	75.7	4.2e-54
AMG92996.1|2417394_2418381_-	arabinose-5-phosphate isomerase KdsD	NA	A0A2P0VNK5	Tetraselmis_virus	31.8	8.7e-39
AMG92997.1|2418395_2419373_-	calcium/sodium antiporter	NA	A0A2D1GNI8	Pseudoalteromonas_phage	21.7	9.6e-06
>prophage 4
CP014015	Citrobacter amalonaticus strain FDAARGOS_122, complete genome	4904719	3958037	3972761	4904719		Salmonella_phage(29.41%)	20	NA	NA
AMG94285.1|3958037_3959324_-	DUF3596 domain-containing protein	NA	A0A0U2JGI6	Escherichia_phage	49.1	6.7e-108
AMG94286.1|3959323_3959539_-	hypothetical protein	NA	A0A0U2RY08	Escherichia_phage	56.3	2.8e-19
AVI00505.1|3959603_3959843_-	DUF4060 domain-containing protein	NA	M9P0E0	Enterobacteria_phage	79.2	4.4e-29
AMG94287.1|3959885_3960995_-	hypothetical protein	NA	A0A2I7RQF1	Vibrio_phage	43.0	4.8e-62
AMG94288.1|3961006_3963691_-	exodeoxyribonuclease	NA	H6WRX1	Salmonella_phage	59.8	0.0e+00
AMG94289.1|3963818_3964106_-	DNA breaking-rejoining protein	NA	H6WRX2	Salmonella_phage	81.1	1.6e-38
AMG94290.1|3964191_3964350_-	hypothetical protein	NA	K7P7H7	Enterobacteria_phage	98.1	5.3e-23
AMG94291.1|3964349_3964544_-	DUF1482 domain-containing protein	NA	NA	NA	NA	NA
AMG94292.1|3964668_3964893_-	hypothetical protein	NA	NA	NA	NA	NA
AMG94293.1|3965369_3966332_-	hypothetical protein	NA	A9YX09	Burkholderia_phage	46.0	9.3e-70
AMG94294.1|3966491_3966899_-	hypothetical protein	NA	NA	NA	NA	NA
AMG94295.1|3967019_3967406_-	helix-turn-helix domain-containing protein	NA	A0A0M4R5D1	Salmonella_phage	88.9	4.0e-56
AMG94296.1|3967509_3967743_+	Rha family transcriptional regulator	NA	A0A0M4QX15	Salmonella_phage	83.1	1.7e-30
AMG94297.2|3967793_3968288_+	regulator	NA	M9NZI6	Enterobacteria_phage	54.9	3.9e-40
AMG94298.1|3968297_3968801_+	Fis family transcriptional regulator	NA	Q2NPG0	Xanthomonas_virus	42.3	1.2e-28
AMG94299.1|3969187_3970090_+	DNA-binding protein	NA	V5URT9	Shigella_phage	45.9	2.2e-81
AMG94300.1|3970092_3970848_+	DNA replication protein DnaC	NA	H6WRX8	Salmonella_phage	90.4	2.0e-128
AMG94301.1|3970863_3971598_+	hypothetical protein	NA	A0A0U2SAW4	Escherichia_phage	25.7	7.5e-11
AMG95230.1|3971621_3971903_+	DNA-binding protein	NA	A0A222YXX1	Escherichia_phage	73.6	3.0e-29
AMG95231.2|3972380_3972761_+	DUF550 domain-containing protein	NA	K7PGV7	Enterobacterial_phage	77.0	4.5e-44
>prophage 5
CP014015	Citrobacter amalonaticus strain FDAARGOS_122, complete genome	4904719	3975935	4009091	4904719	coat,terminase,tail,transposase,holin	Salmonella_phage(30.3%)	41	NA	NA
AVI00506.1|3975935_3976067_+	hypothetical protein	NA	A0A077SLL5	Escherichia_phage	81.2	3.7e-06
AMG94304.1|3976950_3977181_+	DNA polymerase III subunit theta	NA	Q71T70	Escherichia_phage	80.0	9.7e-26
AVI00507.1|3978137_3978386_+	hypothetical protein	NA	K7PHG9	Enterobacteria_phage	98.8	8.0e-42
AMG94305.1|3978420_3979023_+	DUF1367 domain-containing protein	NA	S4TTI0	Salmonella_phage	91.0	5.2e-103
AVI00587.1|3979028_3979229_+	hypothetical protein	NA	H6WRY8	Salmonella_phage	63.1	2.0e-19
AMG94306.1|3979231_3979513_+	hypothetical protein	NA	K7P7Q1	Enterobacteria_phage	93.3	4.3e-44
AVI00508.1|3979509_3979656_+	YlcG family protein	NA	H6WRZ0	Salmonella_phage	87.5	5.2e-17
AMG95232.1|3979645_3980443_+	antitermination protein	NA	H6WRZ1	Salmonella_phage	78.1	1.4e-119
AMG94307.1|3980605_3980818_-	KTSC domain-containing protein	NA	NA	NA	NA	NA
AMG94308.1|3981118_3981346_+	DUF333 domain-containing protein	NA	NA	NA	NA	NA
AMG94309.1|3982116_3983655_-|transposase	IS66 family transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	91.0	5.7e-271
AMG94310.1|3983704_3984052_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	98.3	4.8e-61
AMG94311.1|3984051_3984429_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZBP6	Stx2-converting_phage	90.4	3.2e-58
AMG94312.1|3984555_3984879_+|holin	phage holin, lambda family	holin	Q5G8R5	Enterobacteria_phage	81.9	5.2e-41
AMG94313.1|3984862_3985312_+	lysozyme	NA	A0A0M4R365	Salmonella_phage	78.5	6.7e-63
AMG94314.1|3985308_3985845_+	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	54.5	3.9e-09
AMG94315.1|3986088_3986301_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	75.7	5.4e-23
AVI00588.1|3986311_3986500_+	cold-shock protein	NA	NA	NA	NA	NA
AMG94316.1|3986570_3986801_+	hypothetical protein	NA	NA	NA	NA	NA
AMG94317.1|3987277_3988267_+|terminase	terminase small subunit	terminase	A0A0U2RXW9	Escherichia_phage	36.2	2.1e-32
AMG94318.1|3988247_3989549_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	60.0	2.0e-147
AMG94319.1|3989553_3990957_+	DUF4055 domain-containing protein	NA	G8C7P4	Escherichia_phage	71.5	4.8e-192
AMG94320.1|3990943_3992056_+	hypothetical protein	NA	I6PD76	Cronobacter_phage	56.9	8.1e-118
AMG94321.1|3992160_3992925_+	hypothetical protein	NA	G8C7P6	Escherichia_phage	68.5	1.5e-91
AMG94322.1|3993012_3994149_+|coat	P22 coat - protein 5 family protein	coat	G8C7P7	Escherichia_phage	76.5	7.4e-159
AMG94323.1|3994188_3994398_+	hypothetical protein	NA	G8C7P8	Escherichia_phage	54.8	2.0e-09
AMG94324.1|3994401_3994794_+	protein singed	NA	A0A0H5AUF0	Pseudomonas_phage	43.8	1.9e-13
AMG94325.1|3994795_3995179_+	glutamate 5-kinase	NA	A0A0S2SYG4	Pseudomonas_phage	42.9	1.1e-18
AMG94326.1|3995180_3995561_+	hypothetical protein	NA	A0A059VF88	Pseudomonas_phage	50.8	2.4e-29
AMG94327.1|3995557_3995950_+	electron transfer flavoprotein subunit beta	NA	NA	NA	NA	NA
AMG94328.1|3995974_3997150_+	Ig domain-containing protein	NA	A0A059VG08	Pseudomonas_phage	41.1	3.4e-58
AMG94329.1|3997212_3997680_+	hypothetical protein	NA	NA	NA	NA	NA
AMG94330.1|3997769_3997997_+	hypothetical protein	NA	NA	NA	NA	NA
AMG94331.1|3998017_3998572_-	hypothetical protein	NA	NA	NA	NA	NA
AVI00509.1|3998666_4001483_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	36.1	3.4e-112
AMG94332.1|4001486_4002080_+	hypothetical protein	NA	S4TSP7	Salmonella_phage	57.7	4.5e-59
AMG94333.1|4002079_4002664_+	hypothetical protein	NA	S4TND4	Salmonella_phage	88.7	1.9e-97
AMG94334.1|4002670_4003069_+	hypothetical protein	NA	S4TR39	Salmonella_phage	81.8	2.1e-60
AMG94335.1|4003068_4005789_+	DUF1983 domain-containing protein	NA	S4TTF5	Salmonella_phage	84.2	0.0e+00
AMG94336.1|4005788_4006733_+	hypothetical protein	NA	I6S634	Salmonella_phage	64.9	5.1e-113
AMG94337.1|4006742_4009091_+	hypothetical protein	NA	A0A0A7DVB5	Escherichia_phage	42.3	4.4e-113
>prophage 6
CP014015	Citrobacter amalonaticus strain FDAARGOS_122, complete genome	4904719	4500812	4509550	4904719	tRNA	Escherichia_phage(33.33%)	10	NA	NA
AMG94743.1|4500812_4501937_+	porin OmpS2	NA	Q1MVN1	Enterobacteria_phage	57.7	5.0e-115
AMG94744.1|4502094_4502307_+	KTSC domain-containing protein	NA	NA	NA	NA	NA
AMG94745.1|4502388_4502823_+	universal stress protein UspF	NA	A0A1W6JNV4	Morganella_phage	53.1	3.2e-30
AMG95256.1|4502874_4504071_-	MFS transporter	NA	NA	NA	NA	NA
AVI00536.1|4504266_4504491_+	hypothetical protein	NA	A0A0U2JGI6	Escherichia_phage	77.6	1.5e-15
AMG94746.1|4504502_4505438_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	94.1	1.4e-139
AMG94747.1|4505481_4506855_-	ATP-dependent RNA helicase DbpA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	31.2	2.4e-50
AVI00537.1|4506878_4507067_-	hypothetical protein	NA	NA	NA	NA	NA
AMG94748.1|4507343_4508327_-	zinc transporter ZntB	NA	NA	NA	NA	NA
AMG94749.1|4508416_4509550_-	chemoreceptor protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	39.4	2.2e-09
