The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP014099	Shigella sonnei strain FDAARGOS_90, complete genome	4878943	3911	45926	4878943	transposase,tRNA,tail	Enterobacteria_phage(35.71%)	40	NA	NA
AMG14134.1|3911_5099_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AMG14136.1|5539_6712_+|transposase	IS21-like element IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	100.0	2.2e-230
AMG14137.2|6708_7509_+	AAA family ATPase	NA	U5N3V8	Enterobacteria_phage	100.0	6.6e-146
AMG14139.2|7889_9102_+|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	98.6	2.7e-167
AMG14141.1|9513_9825_+	type IV conjugative transfer system protein TraL	NA	NA	NA	NA	NA
AVH84538.1|10009_11281_+	DUF87 domain-containing protein	NA	NA	NA	NA	NA
AMG14142.1|11277_11664_+	type-F conjugative transfer system protein TrbI	NA	NA	NA	NA	NA
AMG18476.2|11660_12965_+	DNA helicase	NA	NA	NA	NA	NA
AMG14143.1|13786_14347_+	conjugal transfer protein	NA	NA	NA	NA	NA
AMG14144.1|14476_14689_+	hypothetical protein	NA	NA	NA	NA	NA
AMG14145.2|15055_16212_-|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AMG14147.2|16342_17470_+|transposase	IS110 family transposase ISSso6	transposase	NA	NA	NA	NA
AMG14150.2|18597_18978_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZBP6	Stx2-converting_phage	99.2	4.2e-66
AMG14151.1|18974_19322_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZBY2	Stx2-converting_phage	98.3	5.3e-60
AMG14152.1|19371_20910_+|transposase	IS66 family transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	94.3	1.0e-283
AMG14154.2|21934_23209_-	TieB	NA	NA	NA	NA	NA
AMG14155.1|23178_25440_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AMG14156.1|25608_26385_-	energy transducer TonB	NA	NA	NA	NA	NA
AMG14157.2|26392_27310_-	iron-regulated protein	NA	NA	NA	NA	NA
AMG14159.2|28697_29971_-|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AVH84539.1|30728_30911_-	hypothetical protein	NA	NA	NA	NA	NA
AVH84540.1|30914_31124_+	hypothetical protein	NA	NA	NA	NA	NA
AVH84541.1|31141_31477_-	colicin transporter	NA	NA	NA	NA	NA
AVH84542.1|31454_31673_-	hypothetical protein	NA	NA	NA	NA	NA
AVH84543.1|31605_31953_+	hypothetical protein	NA	NA	NA	NA	NA
AMG14161.1|31972_32563_-	hypothetical protein	NA	NA	NA	NA	NA
AMG14162.1|32559_32820_-	hypothetical protein	NA	NA	NA	NA	NA
AMG14164.2|32917_34130_+|transposase	IS3-like element IS629 family transposase	transposase	Q6H9S3	Enterobacteria_phage	99.3	1.9e-168
AMG14165.1|34505_35633_+|transposase	IS110 family transposase ISSso6	transposase	NA	NA	NA	NA
AVH84544.1|35959_36178_+	hypothetical protein	NA	B6DZU5	Stx2-converting_phage	100.0	2.4e-34
AMG14167.2|36229_37385_+|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	1.2e-66
AMG14168.1|37624_37972_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZBY2	Stx2-converting_phage	98.3	5.3e-60
AMG14170.1|38539_39706_+|tail	phage tail protein	tail	Q8W611	Enterobacteria_phage	38.9	4.9e-57
AMG14171.1|39656_40280_+	DUF4376 domain-containing protein	NA	A0A0U2QQK4	Escherichia_phage	75.9	1.2e-78
AMG14172.1|40279_40459_+	hypothetical protein	NA	NA	NA	NA	NA
AMG14173.1|40459_42286_-	invasion protein	NA	NA	NA	NA	NA
AVH84545.1|43385_43568_+	hypothetical protein	NA	NA	NA	NA	NA
AMG14174.1|43672_44521_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AMG14175.1|44729_45365_+	phosphatidylglycerophosphatase C	NA	NA	NA	NA	NA
AMG18477.2|45389_45926_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	NA	NA	NA	NA
>prophage 2
CP014099	Shigella sonnei strain FDAARGOS_90, complete genome	4878943	213986	340717	4878943	holin,terminase,head,lysis,transposase,tRNA,portal,capsid,tail	Enterobacteria_phage(54.9%)	113	NA	NA
AMG14314.1|213986_215402_+|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
AMG14315.1|215453_215846_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AMG14316.1|215847_216192_-	hypothetical protein	NA	NA	NA	NA	NA
AMG14317.1|219064_220267_-	NupC/NupG family nucleoside CNT transporter	NA	NA	NA	NA	NA
AMG14318.1|220602_221841_+	divalent metal cation transporter	NA	NA	NA	NA	NA
AMG14320.1|221981_222308_-	DUF2502 domain-containing protein	NA	NA	NA	NA	NA
AMG14321.1|222422_223679_-	ion channel protein	NA	NA	NA	NA	NA
AMG14322.1|223882_224848_+	glucokinase	NA	NA	NA	NA	NA
AMG14323.1|225067_225394_+	fructose-like phosphotransferase enzyme IIB component 1	NA	NA	NA	NA	NA
AMG14324.1|225415_226663_+	fructose-like permease IIC component	NA	NA	NA	NA	NA
AMG14325.1|227762_228800_+	aminopeptidase	NA	NA	NA	NA	NA
AMG14326.1|231322_232180_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AMG14327.1|232192_232927_-	DNA-binding response regulator	NA	A0A2R2ZGH8	Clostridioides_phage	25.4	3.6e-13
AMG14329.1|235792_237031_+	glutamate--pyruvate aminotransferase AlaC	NA	NA	NA	NA	NA
AVH84815.1|237095_237167_-	membrane protein YpdK	NA	NA	NA	NA	NA
AMG14330.1|237522_238443_-	lipid A biosynthesis palmitoleoyl acyltransferase	NA	A0A1W6JP29	Morganella_phage	54.8	1.1e-75
AVH84816.1|238487_238562_+	hypothetical protein	NA	NA	NA	NA	NA
AMG14331.1|238795_239038_+	DUF2545 domain-containing protein	NA	NA	NA	NA	NA
AMG14333.1|239114_239390_-	lipoprotein	NA	NA	NA	NA	NA
AMG14334.1|239686_240310_+	hypothetical protein	NA	NA	NA	NA	NA
AMG14335.1|240822_242073_+	formyl-CoA--oxalate CoA-transferase	NA	NA	NA	NA	NA
AMG14336.1|242126_243821_+	oxalyl-CoA decarboxylase	NA	E5ERI2	Ostreococcus_lucimarinus_virus	23.6	1.4e-23
AMG14337.1|243890_244835_+	transporter YfdV	NA	NA	NA	NA	NA
AMG14338.1|244908_246054_+	CoA:oxalate CoA-transferase	NA	NA	NA	NA	NA
AMG18485.2|246109_249703_-	two-component system sensor histidine kinase EvgS	NA	A0A1V0SGX0	Hokovirus	32.1	6.0e-37
AMG14339.1|249707_250322_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AMG14340.1|250737_251901_+	EmrA/EmrK family multidrug efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AMG14341.1|251900_253439_+	multidrug resistance protein EmrY	NA	NA	NA	NA	NA
AVH84552.1|253546_254875_-	D-serine dehydratase	NA	NA	NA	NA	NA
AMG18486.1|255341_256337_+	transcriptional regulator	NA	NA	NA	NA	NA
AMG14343.1|256344_257778_-	glycoside hydrolase family 32 protein	NA	F8WPR5	Bacillus_phage	25.4	5.3e-29
AMG14344.1|258022_259351_-|transposase	IS4-like element IS4 family transposase	transposase	NA	NA	NA	NA
AMG14346.2|259914_261082_+|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	99.7	5.8e-183
AVH84817.1|261039_261387_+	fructokinase	NA	NA	NA	NA	NA
AMG18487.1|262298_262829_-	hypothetical protein	NA	NA	NA	NA	NA
AVH84553.1|262719_262950_-	hypothetical protein	NA	NA	NA	NA	NA
AMG14348.1|263142_263487_+	hypothetical protein	NA	K7PJY7	Enterobacterial_phage	97.4	1.9e-57
AMG14349.1|263609_263810_+	transcriptional regulator	NA	K7P7V0	Enterobacteria_phage	100.0	2.4e-33
AMG14350.1|264338_265586_-	MFS transporter	NA	NA	NA	NA	NA
AMG14352.2|266319_267120_-	AAA family ATPase	NA	U5N3V8	Enterobacteria_phage	100.0	6.6e-146
AMG14353.1|267116_268289_-|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	99.7	6.3e-230
AMG14354.1|269152_269530_-	hypothetical protein	NA	NA	NA	NA	NA
AMG14355.1|269794_270250_+	hypothetical protein	NA	I6PD71	Cronobacter_phage	66.2	2.7e-59
AMG14356.1|270249_270420_+	hypothetical protein	NA	K7P7K0	Enterobacteria_phage	67.9	1.5e-12
AMG14357.1|270412_270703_+	DUF1364 domain-containing protein	NA	K7PGZ6	Enterobacteria_phage	95.8	3.0e-48
AMG14358.1|270699_271062_+	crossover junction endodeoxyribonuclease RusA	NA	K7PM48	Enterobacteria_phage	96.5	7.3e-60
AMG14359.1|271058_271199_+	YlcG family protein	NA	K7PHH3	Enterobacteria_phage	67.4	5.5e-08
AMG14360.1|271284_271668_+	antitermination protein Q	NA	A0A088CD47	Shigella_phage	83.3	4.4e-55
AMG14361.1|271856_272939_-	porin OmpD	NA	Q1MVN1	Enterobacteria_phage	76.3	8.9e-154
AMG14363.1|274287_274503_+|holin	holin	holin	A5LH82	Enterobacteria_phage	100.0	2.6e-33
AMG14364.1|274502_275000_+	lysozyme	NA	M1FJA0	Enterobacteria_phage	94.5	2.1e-86
AMG14365.1|274996_275455_+|lysis	lysis protein	lysis	K7PJW6	Enterobacteria_phage	80.9	1.2e-56
AMG14366.1|275656_276154_+	DNA-binding protein	NA	A0A220NRM9	Escherichia_phage	100.0	1.1e-93
AMG14367.1|276150_276408_+	hypothetical protein	NA	A0A0P0ZBT1	Stx2-converting_phage	98.8	1.5e-38
AVH84554.1|276411_276600_-	hypothetical protein	NA	NA	NA	NA	NA
AVH84555.1|276879_278152_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AMG14370.1|278332_278743_-	hypothetical protein	NA	C6ZCX4	Enterobacteria_phage	76.3	1.3e-52
AMG14371.1|278800_279034_-	DUF3950 domain-containing protein	NA	A0A0K2FIR8	Escherichia_phage	96.3	9.5e-21
AMG14372.1|279181_279283_+	hypothetical protein	NA	NA	NA	NA	NA
AMG14373.1|279422_279968_+|terminase	terminase small subunit	terminase	A0A0K2FIG2	Enterobacteria_phage	98.3	2.3e-94
AMG14374.1|279942_281868_+|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	99.4	0.0e+00
AMG14375.1|281864_282071_+|head,tail	Lambda prophage-derived head-to-tail joining protein W	head,tail	A0A2R9YJL2	Escherichia_phage	100.0	5.8e-30
AMG14376.1|282067_283669_+|portal	phage portal protein	portal	A0A0K2FJC0	Enterobacteria_phage	99.2	2.2e-310
AMG14377.1|283649_284969_+	S49 family peptidase	NA	A0A2I6TC87	Escherichia_phage	98.2	3.4e-232
AMG14378.1|284978_285311_+|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	99.1	3.8e-55
AMG14379.1|285366_286392_+|capsid	minor capsid protein E	capsid	C6ZCY2	Enterobacteria_phage	98.8	4.3e-190
AMG14380.2|286433_286832_+	DNA-packaging protein FI	NA	A0A0K2FIR1	Enterobacteria_phage	83.3	1.2e-50
AMG14381.1|286843_287197_+|tail	phage tail protein	tail	A0A0K2FJB7	Enterobacteria_phage	99.1	4.4e-62
AMG14382.1|287208_287787_+|tail	phage tail protein	tail	A0A2R9YJK4	Escherichia_phage	89.6	2.0e-80
AMG14383.1|287783_288179_+|tail	phage tail protein	tail	A0A2R9YJI2	Escherichia_phage	99.2	6.5e-70
AMG18490.1|288186_288927_+|tail	phage tail protein	tail	A0A0K2FJ05	Enterobacteria_phage	97.6	1.0e-129
AMG14384.1|288942_289365_+|tail	phage minor tail protein G	tail	A0A0K2FIQ8	Enterobacteria_phage	96.4	3.1e-70
AMG14385.1|289346_289781_+|tail	phage tail assembly protein T	tail	A0A0K2FJB3	Enterobacteria_phage	99.2	2.0e-64
AMG14386.1|289773_292335_+|tail	phage tail tape measure protein	tail	A0A2R9YJM8	Escherichia_phage	89.2	0.0e+00
AMG14387.1|292331_292661_+|tail	phage tail protein	tail	A0A0K2FIE9	Enterobacteria_phage	97.2	3.1e-57
AMG14388.1|292660_293359_+|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	98.3	8.1e-132
AMG14389.1|293364_294108_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	99.2	7.5e-152
AMG14390.2|294005_294677_+|tail	tail assembly protein	tail	A0A2R9YJH6	Escherichia_phage	97.8	2.2e-102
AMG14391.1|294737_298235_+	host specificity protein J	NA	A0A291AWT4	Escherichia_phage	97.6	0.0e+00
AVH84818.1|298886_301970_+|tail	phage tail protein	tail	U5N099	Enterobacteria_phage	82.1	7.3e-68
AMG14394.1|301969_302551_+|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	93.2	8.0e-101
AMG14398.1|305529_306687_-	DUF4102 domain-containing protein	NA	A5VW56	Enterobacteria_phage	99.5	1.4e-221
AMG14399.1|306998_307931_-	transporter	NA	E7DYY8	Enterobacteria_phage	100.0	1.2e-167
AVH84556.1|308028_308199_+	hypothetical protein	NA	NA	NA	NA	NA
AMG14400.1|308224_308980_+	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA	NA
AMG14402.1|311159_312356_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AMG14403.1|312821_314162_-	long-chain fatty acid transporter	NA	NA	NA	NA	NA
AVH84557.1|314197_314449_+	hypothetical protein	NA	NA	NA	NA	NA
AMG14404.1|314533_314818_+	DUF406 domain-containing protein	NA	NA	NA	NA	NA
AMG14405.1|314997_316308_+	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA	NA
AMG14406.1|316307_318452_+	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA	NA
AMG14407.1|318654_319140_+	phosphohistidine phosphatase	NA	NA	NA	NA	NA
AMG14408.1|319823_320387_+	type 1 fimbrial protein	NA	NA	NA	NA	NA
AMG14409.1|320468_323111_+	outer membrane usher protein	NA	NA	NA	NA	NA
AMG14411.2|323790_324405_+	fimbrial protein	NA	NA	NA	NA	NA
AMG14412.1|324401_324872_+	fimbrial protein	NA	NA	NA	NA	NA
AMG14413.1|324868_325393_+	fimbrial protein	NA	NA	NA	NA	NA
AMG14414.1|325394_326252_+	DUF2544 domain-containing protein	NA	NA	NA	NA	NA
AMG14415.1|326373_326925_-	endonuclease SmrB	NA	NA	NA	NA	NA
AMG14416.1|327090_328023_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AMG14417.1|328057_329143_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	48.4	9.1e-90
AMG14418.1|329146_329971_+	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA	NA
AMG14419.1|329970_330780_+	hypothetical protein	NA	NA	NA	NA	NA
AMG14420.1|330779_331328_+	elongation factor P hydroxylase	NA	NA	NA	NA	NA
AMG14421.1|331361_331640_+	YfcL family protein	NA	NA	NA	NA	NA
AMG14422.1|331760_333767_-|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	tRNA	NA	NA	NA	NA
AMG14423.1|333925_335146_+	beta-ketoacyl-[acyl-carrier-protein] synthase I	NA	NA	NA	NA	NA
AVH84819.1|335257_335479_-	hypothetical protein	NA	NA	NA	NA	NA
AMG14424.1|335420_336599_+	MFS transporter	NA	NA	NA	NA	NA
AMG14425.1|336595_337591_-	flagella biosynthesis regulator Flk	NA	NA	NA	NA	NA
AMG14426.1|337689_338826_+	erythronate-4-phosphate dehydrogenase	NA	A0A2R8FDS8	Brazilian_cedratvirus	29.1	5.9e-23
AMG14427.1|338891_339905_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AMG14428.1|339904_340717_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
>prophage 3
CP014099	Shigella sonnei strain FDAARGOS_90, complete genome	4878943	568570	576009	4878943		Enterobacteria_phage(100.0%)	7	NA	NA
AMG14627.1|568570_568819_-	DNA damage-inducible protein DinI	NA	Q687E4	Enterobacteria_phage	97.6	9.1e-38
AMG18499.1|569333_571019_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	99.5	9.5e-304
AMG14628.1|571015_571735_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AMG14629.1|571781_572252_+	DUF1456 domain-containing protein	NA	Q9EYF4	Enterobacteria_phage	100.0	1.8e-82
AMG14630.1|572292_572754_-	hypothetical protein	NA	Q9EYF5	Enterobacteria_phage	100.0	1.9e-76
AMG14631.1|572875_574876_-	hypothetical protein	NA	Q9EYF6	Enterobacteria_phage	95.5	0.0e+00
AMG14632.1|574872_576009_-	VWA domain-containing protein	NA	Q9EYF7	Enterobacteria_phage	97.7	8.5e-163
>prophage 4
CP014099	Shigella sonnei strain FDAARGOS_90, complete genome	4878943	710257	767515	4878943	transposase,integrase	Shigella_phage(18.18%)	52	743284:743301	762108:762125
AMG14750.1|710257_711289_-|transposase	IS630 family transposase IS630	transposase	NA	NA	NA	NA
AVH84573.1|712471_713639_+|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	100.0	1.8e-184
AVH84574.1|713645_717518_-	hypothetical protein	NA	NA	NA	NA	NA
AMG18503.1|720090_720888_-	protein MtfA	NA	NA	NA	NA	NA
AMG14753.1|721375_721618_-	hypothetical protein	NA	NA	NA	NA	NA
AMG14755.1|722513_723164_-	metal-binding protein ZinT	NA	NA	NA	NA	NA
AMG14756.1|723420_724056_-	sulfoxide reductase heme-binding subunit YedZ	NA	NA	NA	NA	NA
AMG14757.1|724056_725061_-	mononuclear molybdenum enzyme YedY	NA	NA	NA	NA	NA
AMG14758.1|725169_725583_-	5-hydroxyisourate hydrolase	NA	NA	NA	NA	NA
AMG14759.1|725715_726387_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	35.2	5.4e-32
AMG14760.1|726386_727745_+	HAMP domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	20.5	8.7e-05
AMG14763.1|728929_729781_-	Molecular chaperone Hsp31 and glyoxalase 3	NA	NA	NA	NA	NA
AMG18504.2|732878_733244_+	permease	NA	NA	NA	NA	NA
AMG14767.1|733283_733940_+	phosphohydrolase	NA	NA	NA	NA	NA
AMG14768.1|734006_735425_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	54.8	4.0e-101
AMG14769.1|735405_735876_+	very short patch repair endonuclease	NA	E5E3X5	Burkholderia_phage	47.6	4.4e-33
AMG14770.1|736958_737876_+	DUF808 domain-containing protein	NA	NA	NA	NA	NA
AMG14771.1|737954_738137_+	DUF2158 domain-containing protein	NA	NA	NA	NA	NA
AVH84827.1|738198_738387_+	hypothetical protein	NA	NA	NA	NA	NA
AMG14772.2|738307_740002_+	cellulose biosynthesis regulator YedQ	NA	A0A127AWB9	Bacillus_phage	35.6	1.3e-18
AMG14773.1|739998_740814_-	mannosyl-3-phosphoglycerate phosphatase-related protein	NA	NA	NA	NA	NA
AMG14774.1|741111_741339_-	DUF2525 domain-containing protein	NA	NA	NA	NA	NA
AMG14775.2|741447_741690_+	DsrB protein	NA	NA	NA	NA	NA
AMG14776.1|741733_742357_-	transcriptional regulator RcsA	NA	NA	NA	NA	NA
AMG14777.1|742641_743427_-	flagellar type III secretion system protein FliR	NA	NA	NA	NA	NA
743284:743301	attL	CATTGCCAGCCCCAGTTT	NA	NA	NA	NA
AMG14778.1|743435_743705_-	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AMG14779.1|743714_744452_-	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AMG14780.1|744451_744817_-	flagellar protein FliO	NA	NA	NA	NA	NA
AMG14781.1|744819_745233_-	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AMG14782.1|745229_746234_-	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AMG14783.1|746238_746703_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
AMG14784.1|746807_747935_-	flagellar hook length control protein FliK	NA	NA	NA	NA	NA
AMG14785.1|747931_748375_-	flagellar protein FliJ	NA	NA	NA	NA	NA
AMG14786.1|748393_749767_-	flagellum-specific ATP synthase FliI	NA	NA	NA	NA	NA
AMG14787.1|749766_750453_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
AMG14788.1|750445_751441_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
AMG14789.1|751433_753092_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
AMG18505.1|753307_753622_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
AMG14790.1|753541_753856_-|integrase	integrase	integrase	A0A286S1S8	Klebsiella_phage	58.8	2.6e-05
AMG14791.1|753955_754288_+	multidrug SMR transporter	NA	NA	NA	NA	NA
AMG14792.1|754456_755008_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
AMG14793.1|755017_755815_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AVH84575.1|756334_757608_-|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	95.7	2.1e-170
AMG14797.1|759320_760529_+|transposase	transposase	transposase	A0A1B0VCD8	Salmonella_phage	91.5	8.9e-211
AMG14798.1|760568_761240_-	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	59.9	4.8e-81
AMG14799.1|761346_761580_-	SirA-like protein	NA	NA	NA	NA	NA
AMG14800.1|761576_762782_-	YeeE/YedE family protein	NA	NA	NA	NA	NA
762108:762125	attR	CATTGCCAGCCCCAGTTT	NA	NA	NA	NA
AMG14801.1|762968_763382_+	hypothetical protein	NA	NA	NA	NA	NA
AMG14802.1|763415_764903_-	alpha-amylase	NA	NA	NA	NA	NA
AMG14803.1|764980_765346_-	flagellar protein FliT	NA	NA	NA	NA	NA
AMG14804.1|765345_765756_-	flagella export chaperone FliS	NA	NA	NA	NA	NA
AMG14806.2|766359_767515_+|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
>prophage 5
CP014099	Shigella sonnei strain FDAARGOS_90, complete genome	4878943	776224	836570	4878943	transposase,tRNA	Planktothrix_phage(15.38%)	55	NA	NA
AMG14814.1|776224_777481_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
AMG14815.1|777522_778605_+	peptide chain release factor 1	NA	W8EDB3	Pseudomonas_phage	41.6	1.5e-07
AVH84576.1|778604_779438_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AMG14816.1|779434_779827_+	protein sirB2	NA	NA	NA	NA	NA
AMG14817.1|780674_781529_+	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	39.0	8.3e-46
AMG14818.2|781677_781785_-	small toxic polypeptide LdrA/LdrC	NA	NA	NA	NA	NA
AMG14819.1|782212_782347_-	type I toxin-antitoxin system toxin Ldr family protein	NA	NA	NA	NA	NA
AMG14820.2|782748_782856_-	small toxic polypeptide LdrA/LdrC	NA	NA	NA	NA	NA
AVH84577.1|782894_783080_+	hypothetical protein	NA	NA	NA	NA	NA
AMG14821.1|783258_784359_-	sodium-potassium/proton antiporter ChaA	NA	NA	NA	NA	NA
AMG14822.1|784628_784859_+	cation transport regulator ChaB	NA	A5IZT6	Spodoptera_litura_granulovirus	40.0	8.5e-06
AMG14823.1|785016_785712_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AMG14824.1|785755_786109_-	hypothetical protein	NA	NA	NA	NA	NA
AMG14825.1|786293_787688_+	YchO family inverse autotransporter domain-containing protein	NA	NA	NA	NA	NA
AMG14826.1|787688_788339_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AMG14827.1|788331_790128_-	nitrate/nitrite two-component system sensor histidine kinase NarX	NA	NA	NA	NA	NA
AMG14828.1|790153_790372_+	hypothetical protein	NA	NA	NA	NA	NA
AMG14829.1|790466_791858_+	nitrate/nitrite transporter NarK	NA	NA	NA	NA	NA
AMG14830.1|792250_795994_+	nitrate reductase subunit alpha	NA	NA	NA	NA	NA
AMG14831.1|795990_797529_+	nitrate reductase subunit beta	NA	A0A077SL61	Escherichia_phage	40.8	6.3e-20
AMG14832.1|797525_798236_+	nitrate reductase molybdenum cofactor assembly chaperone	NA	NA	NA	NA	NA
AMG14833.1|798235_798913_+	respiratory nitrate reductase subunit gamma	NA	NA	NA	NA	NA
AMG14834.1|799519_800362_-	formyltetrahydrofolate deformylase	NA	M4QRX9	Synechococcus_phage	46.3	3.1e-13
AMG14835.1|800411_800870_-	hypothetical protein	NA	NA	NA	NA	NA
AMG14836.1|800982_801888_+	patatin family protein	NA	NA	NA	NA	NA
AMG14837.1|801979_802993_+	two-component system response regulator RssB	NA	NA	NA	NA	NA
AMG14838.1|803194_804103_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	46.8	1.4e-59
AMG14839.1|804246_804660_-	DNA-binding protein H-NS	NA	NA	NA	NA	NA
AMG14840.1|805264_805882_+	thymidine kinase	NA	A0A0A0YP64	Citrobacter_phage	53.6	1.3e-53
AMG14841.1|806238_807567_+|transposase	IS4-like element IS4 family transposase	transposase	NA	NA	NA	NA
AMG14842.1|807621_810297_-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase	NA	NA	NA	NA	NA
AMG14843.1|810774_811422_+	MarC family protein	NA	NA	NA	NA	NA
AVH84578.1|811743_811935_-	hypothetical protein	NA	NA	NA	NA	NA
AMG18509.1|812159_813791_+	oligopeptide ABC transporter substrate-binding protein OppA	NA	NA	NA	NA	NA
AMG14844.1|813876_814797_+	oligopeptide ABC transporter permease OppB	NA	NA	NA	NA	NA
AMG14845.1|814811_815720_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
AMG14846.1|815731_816745_+	oligopeptide ABC transporter ATP-binding protein OppD	NA	G9BWD6	Planktothrix_phage	31.7	2.0e-14
AMG14847.1|816741_817746_+	oligopeptide ABC transporter ATP-binding protein OppF	NA	G9BWD6	Planktothrix_phage	35.6	1.8e-23
AMG14848.1|817798_818128_-	dsDNA-mimic protein	NA	NA	NA	NA	NA
AMG14849.1|818162_819623_-	cardiolipin synthase A	NA	NA	NA	NA	NA
AMG14850.1|819654_819939_+	hypothetical protein	NA	NA	NA	NA	NA
AMG14851.1|819993_821247_-	voltage-gated potassium channel	NA	NA	NA	NA	NA
AMG14853.2|821555_822711_+|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AMG14854.1|822813_823110_-	hypothetical protein	NA	NA	NA	NA	NA
AMG14855.1|823908_824460_+	recombinase family protein	NA	G8I4U3	Mycobacterium_phage	40.9	1.5e-27
AMG14856.1|826023_826581_+	hypothetical protein	NA	NA	NA	NA	NA
AMG14857.1|826581_826860_+	hypothetical protein	NA	NA	NA	NA	NA
AMG14858.1|826862_827135_+	HNH endonuclease	NA	NA	NA	NA	NA
AMG14859.1|827134_827335_+	hypothetical protein	NA	NA	NA	NA	NA
AMG14861.2|828398_828614_+	hypothetical protein	NA	NA	NA	NA	NA
AMG14862.1|829129_829840_+|transposase	transposase	transposase	NA	NA	NA	NA
AVH84579.1|829862_830072_+	hypothetical protein	NA	NA	NA	NA	NA
AMG14863.1|831511_832543_-|transposase	IS630 family transposase IS630	transposase	NA	NA	NA	NA
AMG14866.2|833117_834273_+|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AMG14868.2|835296_836570_-|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
>prophage 6
CP014099	Shigella sonnei strain FDAARGOS_90, complete genome	4878943	842633	877336	4878943	tail,holin,transposase,capsid,protease	Escherichia_phage(29.63%)	38	NA	NA
AMG14875.1|842633_842852_-	sugar acetyltransferase inhibitor	NA	A0A1I9LJM2	Stx_converting_phage	91.7	5.2e-29
AMG14876.1|842884_843097_-	hypothetical protein	NA	A0A2R2Z310	Escherichia_phage	90.0	4.4e-33
AMG14878.1|843980_844367_-	DUF977 domain-containing protein	NA	A0A0U2QQN3	Escherichia_phage	89.0	9.5e-58
AMG14880.2|844434_845590_+|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AMG14881.1|845602_845833_+	hypothetical protein	NA	A0A2P0P958	Salmonella_phage	76.9	5.0e-22
AMG14882.1|845843_846011_+	hypothetical protein	NA	A0A192Y6F5	Salmonella_phage	89.4	2.1e-14
AMG14883.1|846007_846352_+	hypothetical protein	NA	A0A2R2Z2X8	Escherichia_phage	99.1	3.8e-58
AMG14884.1|846586_846799_+	Hok/Gef family protein	NA	A0A0U2QV81	Escherichia_phage	96.9	8.9e-26
AMG18511.1|847102_847375_+	hypothetical protein	NA	NA	NA	NA	NA
AMG14885.1|847376_848435_+	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	47.4	1.3e-88
AMG14886.1|848435_848816_+	RusA family crossover junction endodeoxyribonuclease	NA	V5URS4	Shigella_phage	63.6	1.5e-34
AMG14887.1|848812_849634_+	antitermination protein	NA	K7P7B9	Enterobacteria_phage	59.7	1.4e-79
AMG14888.1|849858_850056_+	TrmB family transcriptional regulator	NA	Q9MC00	Enterobacteria_phage	100.0	2.1e-29
AMG14889.1|850206_851265_+	site-specific DNA-methyltransferase	NA	A0A0N7KZF8	Stx2-converting_phage	94.6	2.3e-199
AMG14890.2|852042_853199_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	1.8e-67
AMG14892.1|853797_855651_+	DUF1737 domain-containing protein	NA	Q08JA2	Stx2-converting_phage	90.2	0.0e+00
AMG14893.1|855801_856017_+|holin	holin	holin	G9L6J5	Escherichia_phage	100.0	9.0e-34
AMG14894.1|856021_856336_+	hypothetical protein	NA	K7PGU6	Enterobacteria_phage	99.0	8.3e-52
AMG14895.2|856769_857926_-|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AMG14898.1|858280_858808_+|tail	tail fiber assembly protein	tail	A0A0C4UR05	Shigella_phage	84.0	7.1e-80
AMG14899.1|858836_859370_-|tail	tail fiber assembly protein	tail	C9DGR0	Escherichia_phage	85.9	3.4e-82
AVH84828.1|860361_860544_+	recombinase family protein	NA	A0A0C4UR34	Shigella_phage	95.0	1.4e-24
AVH84581.1|860660_860798_+|capsid	nucleocapsid protein	capsid	NA	NA	NA	NA
AMG14900.2|860742_861369_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AMG14902.1|862148_862706_-	Rha family transcriptional regulator	NA	Q8H9L9	Vibrio_phage	63.8	4.2e-30
AVH84829.1|862702_862978_-	hypothetical protein	NA	S5MQL6	Escherichia_phage	52.9	1.1e-10
AMG14904.1|864152_864959_-	tryptophan synthase subunit alpha	NA	NA	NA	NA	NA
AMG14905.1|864958_866152_-	tryptophan synthase subunit beta	NA	NA	NA	NA	NA
AMG18512.1|866163_867522_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	NA	A0A0P0IR83	Acinetobacter_phage	40.7	8.6e-37
AMG14906.1|867525_869121_-	bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	38.5	3.8e-52
AMG14907.1|869120_870683_-	anthranilate synthase component I	NA	NA	NA	NA	NA
AVH84830.1|870774_870819_-	trp operon leader peptide	NA	NA	NA	NA	NA
AMG14908.1|870956_871838_+	5'-3' exoribonuclease	NA	NA	NA	NA	NA
AMG14909.1|871834_872455_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
AMG14910.1|873809_874682_+	23S rRNA pseudouridylate synthase B	NA	NA	NA	NA	NA
AMG14911.1|874721_875312_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
AMG14912.1|875308_876067_-	YciK family oxidoreductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	23.9	2.6e-06
AMG14914.1|876286_877336_+|protease	protease	protease	A0A2H4UUF9	Bodo_saltans_virus	31.5	1.3e-21
>prophage 7
CP014099	Shigella sonnei strain FDAARGOS_90, complete genome	4878943	947092	1045454	4878943	transposase,tRNA,protease,tail	Escherichia_phage(31.58%)	81	NA	NA
AVH84584.1|947092_947789_+|transposase	IS1-like element IS1A family transposase	transposase	A0A077SLN4	Escherichia_phage	98.3	4.0e-131
AMG14983.1|948233_948491_+	DUF2534 domain-containing protein	NA	NA	NA	NA	NA
AMG14984.1|948540_949491_-	universal stress protein E	NA	NA	NA	NA	NA
AMG14985.1|949642_950395_-	transcriptional regulator FNR	NA	NA	NA	NA	NA
AMG14986.1|950589_951105_-	methylated-DNA--protein-cysteine methyltransferase	NA	M1PFU9	Streptococcus_phage	42.8	2.4e-24
AMG14987.2|951590_952747_-|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AMG14989.1|953838_954033_-	hypothetical protein	NA	NA	NA	NA	NA
AVH84585.1|953945_955391_-	amidohydrolase	NA	NA	NA	NA	NA
AMG14990.1|955390_956701_-	amidohydrolase	NA	NA	NA	NA	NA
AMG14991.1|956876_957785_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AMG14992.1|958114_958678_+	DNA endonuclease SmrA	NA	NA	NA	NA	NA
AMG14993.1|958698_959931_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	39.5	3.1e-17
AVH84586.1|960185_961169_+	zinc transporter ZntB	NA	NA	NA	NA	NA
AMG14994.1|961443_961617_+	hypothetical protein	NA	NA	NA	NA	NA
AMG14995.1|961646_963020_+	ATP-dependent RNA helicase DbpA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.1	6.6e-53
AMG14996.1|963148_964084_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	98.8	5.9e-146
AMG14997.2|964669_965826_-|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AMG15000.1|966814_967138_+	hypothetical protein	NA	A0A2R2Z307	Escherichia_phage	98.1	3.8e-52
AMG15001.1|967230_967449_+	sugar acetyltransferase inhibitor	NA	A0A1I9LJM2	Stx_converting_phage	91.7	6.8e-29
AMG15002.1|967450_967816_+	HNH endonuclease	NA	A0A2R2Z2X9	Escherichia_phage	100.0	5.1e-69
AMG15003.1|967812_968478_+	hypothetical protein	NA	A0A076G611	Escherichia_phage	44.9	4.6e-36
AMG15004.1|968477_968843_+	DUF551 domain-containing protein	NA	Q08J61	Stx2-converting_phage	53.0	2.3e-29
AMG15005.1|969240_969453_+	Hok/Gef family protein	NA	A0A0P0ZAX5	Stx2-converting_phage	91.4	6.8e-26
AMG15007.2|970307_970577_+	hypothetical protein	NA	NA	NA	NA	NA
AMG15008.1|970648_971248_+	DUF1367 domain-containing protein	NA	A0A0U2RT94	Escherichia_phage	91.5	2.9e-106
AMG15009.1|971247_971538_+	DUF1364 domain-containing protein	NA	A0A0U2KD41	Escherichia_phage	89.6	1.5e-47
AMG15010.1|971534_972089_+	DUF1133 domain-containing protein	NA	A0A0U2S606	Escherichia_phage	69.1	6.5e-68
AMG15011.2|972814_973971_-|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AMG15013.1|974147_974450_-	hypothetical protein	NA	NA	NA	NA	NA
AMG15015.1|974853_975183_+|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	97.2	1.4e-57
AMG15016.1|975192_975891_+|tail	phage minor tail protein L	tail	A5LH40	Enterobacteria_phage	94.0	1.0e-126
AMG15017.2|975895_976639_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	90.7	2.8e-138
AMG15018.2|976536_977178_+|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	87.0	1.0e-96
AVH84587.1|977238_980718_+	host specificity protein J	NA	A5LH43	Enterobacteria_phage	87.3	0.0e+00
AVH84588.1|980785_981385_+	Ail/Lom family protein	NA	H6WZM8	Escherichia_phage	93.5	2.7e-104
AMG15020.2|982231_983388_-|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AMG15024.2|984102_985258_+|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AVH84589.1|985286_985973_+|tail	phage tail protein	tail	NA	NA	NA	NA
AMG15025.1|985923_986547_+	DUF4376 domain-containing protein	NA	A0A0U2QQK4	Escherichia_phage	78.1	3.1e-82
AMG15026.1|986747_987605_-	metal ABC transporter permease	NA	NA	NA	NA	NA
AMG15027.1|987601_988459_-	metal ABC transporter permease	NA	NA	NA	NA	NA
AMG15028.1|988455_989283_-	manganese/iron ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.5	3.8e-11
AMG15029.1|989282_990197_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AMG15030.1|990782_991217_-	universal stress protein UspF	NA	A0A1W6JNV4	Morganella_phage	52.8	1.4e-28
AMG15031.1|991485_992814_-|transposase	IS4-like element IS4 family transposase	transposase	NA	NA	NA	NA
AMG15032.1|994296_997821_-	pyruvate:ferredoxin (flavodoxin) oxidoreductase	NA	NA	NA	NA	NA
AMG15033.1|998094_998361_+	DUF333 domain-containing protein	NA	NA	NA	NA	NA
AMG15034.1|998357_998780_-	heat-shock protein HslJ	NA	NA	NA	NA	NA
AMG15035.1|998890_999880_-	D-lactate dehydrogenase	NA	M1I4S0	Paramecium_bursaria_Chlorella_virus	44.0	2.5e-70
AMG15036.1|1000087_1002727_+	YdbH family protein	NA	NA	NA	NA	NA
AMG15037.1|1002723_1002909_+	YnbE family lipoprotein	NA	NA	NA	NA	NA
AMG15038.1|1002916_1003243_+	DUF1318 domain-containing protein	NA	NA	NA	NA	NA
AVH84590.1|1003414_1003627_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AMG15039.2|1003601_1004875_-|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AMG15042.2|1005545_1006701_+|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AMG15043.1|1007633_1009391_+	hypothetical protein	NA	NA	NA	NA	NA
AMG15044.2|1009404_1010697_+	hypothetical protein	NA	NA	NA	NA	NA
AMG15045.1|1010747_1011353_-	FMN-dependent NADH-azoreductase	NA	NA	NA	NA	NA
AMG15046.1|1011553_1015456_+	ATP-dependent RNA helicase HrpA	NA	A0A1V0SIV3	Klosneuvirus	29.5	2.2e-53
AMG15047.1|1015727_1016408_+	YdcF family protein	NA	NA	NA	NA	NA
AVH84591.1|1019705_1019858_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AVH84592.1|1020099_1020732_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AMG15054.2|1021313_1022469_+|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AMG15055.1|1023230_1023761_+	cytochrome b561	NA	A0A0U2QLA7	Escherichia_phage	44.9	4.1e-19
AMG15056.1|1024005_1024179_+	hypothetical protein	NA	A0A0R6PKG1	Moraxella_phage	67.4	4.4e-07
AMG15057.1|1024250_1024400_-	protein HokB	NA	NA	NA	NA	NA
AMG15058.1|1024798_1026439_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
AMG18518.1|1026476_1027400_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AMG15059.1|1027616_1028960_+	DUF1338 domain-containing protein	NA	NA	NA	NA	NA
AMG15060.1|1029184_1030840_+	glucan biosynthesis protein D	NA	NA	NA	NA	NA
AMG15061.1|1030760_1030964_-	hypothetical protein	NA	NA	NA	NA	NA
AMG15062.1|1030979_1031204_+	DUF465 domain-containing protein	NA	NA	NA	NA	NA
AMG15063.1|1031266_1031803_+	50S ribosomal protein L7/L12-serine acetyltransferase	NA	NA	NA	NA	NA
AMG15064.1|1031797_1032778_-	hypothetical protein	NA	NA	NA	NA	NA
AMG15065.1|1032901_1033894_+	TDT family transporter	NA	NA	NA	NA	NA
AMG15066.1|1033890_1034484_+	tellurite methyltransferase	NA	NA	NA	NA	NA
AMG15071.2|1036758_1037967_+|transposase	transposase	transposase	A0A077SL42	Escherichia_phage	92.0	2.1e-204
AMG15076.1|1041305_1041842_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AMG15077.1|1041914_1043876_+|protease	collagenase-like protease	protease	Q6DW11	Phage_TP	28.9	9.2e-24
AMG18520.2|1043967_1044198_-	DUF2554 domain-containing protein	NA	NA	NA	NA	NA
AMG15078.2|1044297_1045454_-|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
>prophage 8
CP014099	Shigella sonnei strain FDAARGOS_90, complete genome	4878943	1058714	1139392	4878943	transposase	Acidithiobacillus_phage(14.29%)	50	NA	NA
AMG15092.2|1058714_1059871_-|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AMG15094.1|1060330_1062433_-	TonB-dependent siderophore receptor	NA	A0A1B0VCF0	Salmonella_phage	65.6	1.1e-134
AVH84596.1|1062347_1062527_+	hypothetical protein	NA	NA	NA	NA	NA
AVH84597.1|1062466_1062592_-	tonB-dependent receptor yncD	NA	NA	NA	NA	NA
AMG15095.1|1062674_1063736_+	YncE family protein	NA	NA	NA	NA	NA
AMG15096.1|1063850_1065350_-	L-asparagine permease	NA	NA	NA	NA	NA
AMG15097.1|1065616_1066234_+	glutathione S-transferase family protein	NA	NA	NA	NA	NA
AMG15098.1|1066309_1066522_+	hypothetical protein	NA	NA	NA	NA	NA
AMG15099.1|1067339_1069448_+	type VI secretion system tip protein VgrG	NA	A0A077K8Q4	Ralstonia_phage	25.4	8.1e-26
AMG18522.1|1070400_1073511_+	RHS repeat protein	NA	A0A2H4JHK7	uncultured_Caudovirales_phage	42.5	3.6e-22
AMG15101.1|1079454_1079694_+	hypothetical protein	NA	NA	NA	NA	NA
AMG15102.1|1080763_1082299_+|transposase	IS21-like element ISSso4 family transposase	transposase	K4I413	Acidithiobacillus_phage	40.7	1.7e-102
AMG15103.1|1082315_1083071_+	AAA family ATPase	NA	K4HZD4	Acidithiobacillus_phage	43.4	2.4e-44
AMG15105.1|1085085_1086222_+|transposase	ISAs1 family transposase	transposase	NA	NA	NA	NA
AMG15107.1|1087596_1087824_+	tautomerase PptA	NA	NA	NA	NA	NA
AMG15108.1|1087827_1088397_-	flavin reductase family protein	NA	NA	NA	NA	NA
AMG15109.1|1088569_1089415_+	N-hydroxyarylamine O-acetyltransferase	NA	NA	NA	NA	NA
AMG15110.1|1089510_1090404_-	PhzF family isomerase	NA	NA	NA	NA	NA
AMG15111.1|1090482_1091163_-	respiratory nitrate reductase subunit gamma	NA	NA	NA	NA	NA
AMG15112.1|1091159_1091855_-	nitrate reductase molybdenum cofactor assembly chaperone	NA	NA	NA	NA	NA
AMG15113.1|1091854_1093399_-	nitrate reductase subunit beta	NA	A0A077SL61	Escherichia_phage	39.2	6.4e-20
AMG15114.1|1093395_1097136_-	nitrate reductase subunit alpha	NA	NA	NA	NA	NA
AMG15117.2|1098490_1099763_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AMG15118.1|1101064_1102096_-|transposase	IS630 family transposase IS630	transposase	NA	NA	NA	NA
AVH84598.1|1102179_1102752_-	hypothetical protein	NA	NA	NA	NA	NA
AMG15119.1|1104532_1105564_+|transposase	IS630 family transposase IS630	transposase	NA	NA	NA	NA
AMG15120.2|1106026_1106908_-	drug/metabolite DMT transporter permease	NA	NA	NA	NA	NA
AMG15121.1|1107139_1107727_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AMG15122.1|1107775_1110187_+	formate dehydrogenase-N subunit alpha	NA	NA	NA	NA	NA
AMG15123.1|1110199_1111084_+	formate dehydrogenase subunit beta	NA	NA	NA	NA	NA
AMG15124.1|1111076_1111730_+	formate dehydrogenase nitrate-inducible cytochrome b556(Fdn) subunit	NA	NA	NA	NA	NA
AMG15125.1|1111957_1112242_-	transcriptional regulator	NA	A0A2L1IV52	Escherichia_phage	51.1	1.2e-20
AMG15126.1|1113523_1115221_-	NAD-dependent malic enzyme	NA	NA	NA	NA	NA
AMG15127.1|1115377_1115515_-	stationary-phase-induced ribosome-associated protein	NA	NA	NA	NA	NA
AMG15128.1|1115616_1115817_-	biofilm-dependent modulation protein	NA	NA	NA	NA	NA
AMG15130.1|1116952_1117384_+	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AMG15131.1|1117439_1118330_-	peptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.8	3.0e-14
AMG15132.1|1118358_1119345_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.1	6.5e-18
AMG15133.1|1119341_1120238_-	D-ala-D-ala transporter subunit	NA	NA	NA	NA	NA
AMG15134.1|1120234_1121257_-	ABC transporter permease	NA	NA	NA	NA	NA
AMG15135.1|1121258_1122809_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AMG15136.1|1122822_1123404_-	D-alanyl-D-alanine dipeptidase	NA	NA	NA	NA	NA
AMG15137.1|1123662_1126086_-	oxygen-sensing cyclic-di-GMP phosphodiesterase	NA	A0A1V0SL97	Klosneuvirus	22.0	1.6e-09
AMG15138.1|1126086_1127469_-	diguanylate cyclase	NA	G3MA91	Bacillus_virus	31.0	7.7e-17
AMG15139.2|1127840_1129160_-	glycoside hydrolase family 10 protein	NA	NA	NA	NA	NA
AMG15140.1|1129290_1130826_-	glutamate:gamma-aminobutyrate antiporter	NA	NA	NA	NA	NA
AMG15141.1|1130981_1132382_-	glutamate decarboxylase beta	NA	NA	NA	NA	NA
AMG15143.2|1132743_1135539_-	insulinase family protein	NA	A0A167R9K4	Powai_lake_megavirus	23.5	2.8e-18
AMG15144.1|1135583_1137956_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AVH84599.1|1138063_1139392_+|transposase	IS4-like element IS4 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP014099	Shigella sonnei strain FDAARGOS_90, complete genome	4878943	1188417	1194140	4878943		Escherichia_phage(57.14%)	11	NA	NA
AMG18524.1|1188417_1188774_-	hypothetical protein	NA	A0A2R2Z307	Escherichia_phage	94.9	6.3e-56
AMG15186.1|1188831_1189254_-	DUF977 domain-containing protein	NA	A0A0U2QQN3	Escherichia_phage	93.5	2.1e-66
AMG15187.1|1189269_1189995_-	DUF1627 domain-containing protein	NA	A0A0U2SAW4	Escherichia_phage	70.5	9.7e-88
AMG15188.1|1190016_1190763_-	DNA replication protein DnaC	NA	A0A088CBP4	Shigella_phage	82.1	4.0e-113
AMG15189.1|1190769_1191834_-	phage replisome organizer	NA	A0A088CD36	Shigella_phage	65.2	7.1e-63
AMG15190.1|1191905_1192331_-	Rha family transcriptional regulator	NA	NA	NA	NA	NA
AVH84603.1|1192327_1192591_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AMG15191.1|1192702_1193203_+	transcriptional regulator	NA	A0A0U2QW76	Escherichia_phage	34.9	1.5e-15
AMG15192.1|1193222_1193417_+	antitoxin	NA	NA	NA	NA	NA
AMG15193.1|1193416_1193707_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
AMG18525.1|1193987_1194140_+	DUF1391 domain-containing protein	NA	M4QQ57	Salicola_phage	55.3	1.7e-07
>prophage 10
CP014099	Shigella sonnei strain FDAARGOS_90, complete genome	4878943	1421562	1465817	4878943	transposase,tRNA,protease,integrase	Acinetobacter_phage(27.27%)	41	1448466:1448480	1469631:1469645
AMG15406.1|1421562_1422258_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
AMG15407.1|1422315_1424226_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	31.7	6.5e-91
AMG18534.1|1424357_1424702_+	hypothetical protein	NA	NA	NA	NA	NA
AMG15409.2|1425875_1426199_+	DUF1889 domain-containing protein	NA	NA	NA	NA	NA
AMG15410.1|1426318_1426498_-	YoaH family protein	NA	NA	NA	NA	NA
AMG15411.1|1426571_1427933_+	aminodeoxychorismate synthase component 1	NA	S4VT78	Pandoravirus	33.4	3.4e-41
AMG15412.1|1427936_1428515_+	coenzyme A pyrophosphatase	NA	NA	NA	NA	NA
AMG15413.1|1428698_1430063_+	L-serine ammonia-lyase	NA	NA	NA	NA	NA
AMG15414.1|1430193_1431792_+	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AMG15415.1|1431795_1433346_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	45.4	1.7e-41
AMG15416.1|1433333_1433543_-	hypothetical protein	NA	NA	NA	NA	NA
AVH84617.1|1433643_1433838_-	hypothetical protein	NA	NA	NA	NA	NA
AMG15417.1|1433808_1434780_+	PTS mannose transporter subunit EIIAB	NA	NA	NA	NA	NA
AMG15418.1|1434842_1435643_+	PTS mannose/fructose/sorbose transporter subunit IIC	NA	NA	NA	NA	NA
AMG15419.1|1435655_1436507_+	PTS mannose transporter subunit IID	NA	NA	NA	NA	NA
AMG15420.1|1436561_1437020_+	DUF986 domain-containing protein	NA	NA	NA	NA	NA
AMG15421.1|1437206_1437452_+	hypothetical protein	NA	NA	NA	NA	NA
AMG15422.2|1437394_1438015_+	manganese efflux pump MntP	NA	NA	NA	NA	NA
AMG15423.1|1438011_1438821_-	23S rRNA (guanine(745)-N(1))-methyltransferase	NA	NA	NA	NA	NA
AMG15424.1|1438986_1439196_-	cold-shock protein CspC	NA	A0A1W6JNX5	Morganella_phage	78.1	1.6e-22
AMG15425.1|1439208_1439352_-	DUF2627 domain-containing protein	NA	NA	NA	NA	NA
AMG15426.1|1439313_1439520_+	hypothetical protein	NA	NA	NA	NA	NA
AMG15427.1|1440021_1440309_-	hypothetical protein	NA	NA	NA	NA	NA
AMG15428.1|1440383_1440527_-	PhoP regulon feedback inhibition membrane protein MgrB	NA	NA	NA	NA	NA
AMG15429.1|1440685_1440925_+	hypothetical protein	NA	NA	NA	NA	NA
AMG15430.1|1441067_1441859_-	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA	NA
AMG15431.1|1443144_1444026_-|protease	protease HtpX	protease	NA	NA	NA	NA
AMG15432.1|1444217_1446266_-	carboxy terminal-processing peptidase	NA	A0A0R6PIZ1	Moraxella_phage	33.5	8.8e-86
AMG15433.1|1446285_1446984_-	RNA chaperone ProQ	NA	NA	NA	NA	NA
AMG15434.1|1447080_1447578_-	GAF domain-containing protein	NA	NA	NA	NA	NA
AMG15435.1|1447707_1448991_+	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
1448466:1448480	attL	CCCGCTACGCCTGCG	NA	NA	NA	NA
AMG15436.1|1448959_1451593_+	MCE family protein	NA	NA	NA	NA	NA
AMG18535.1|1451673_1453113_+	ribosomal RNA small subunit methyltransferase F	NA	NA	NA	NA	NA
AMG18536.1|1454348_1454540_+	DUF1482 domain-containing protein	NA	NA	NA	NA	NA
AVH84618.1|1454782_1455939_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	3.0e-67
AMG15442.2|1457891_1459047_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	3.6e-68
AMG15443.1|1459258_1460965_+	E3 ubiquitin--protein ligase	NA	NA	NA	NA	NA
AMG15444.2|1461080_1462237_-|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AVH84835.1|1462381_1462642_+	excisionase	NA	A0A2H4J5E1	uncultured_Caudovirales_phage	50.9	5.9e-11
AMG15447.2|1463174_1464447_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AMG15449.1|1464740_1465817_+|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	52.0	1.2e-97
1469631:1469645	attR	CGCAGGCGTAGCGGG	NA	NA	NA	NA
>prophage 11
CP014099	Shigella sonnei strain FDAARGOS_90, complete genome	4878943	1499480	1552747	4878943	transposase,tRNA,tail	Enterobacteria_phage(33.33%)	48	NA	NA
AMG15482.1|1499480_1501253_-|tRNA	aspartate--tRNA ligase	tRNA	NA	NA	NA	NA
AMG15483.1|1501562_1502129_+	hydrolase	NA	NA	NA	NA	NA
AMG15485.1|1502483_1502732_+	damage-inducible protein DinI	NA	K7PLW4	Enterobacteria_phage	100.0	1.8e-38
AMG15486.1|1503332_1505084_+	E3 ubiquitin--protein ligase	NA	NA	NA	NA	NA
AMG15487.1|1505084_1505264_-	hypothetical protein	NA	NA	NA	NA	NA
AMG15488.1|1505263_1505887_-	DUF4376 domain-containing protein	NA	A0A0U2QQK4	Escherichia_phage	76.5	3.2e-79
AMG15489.1|1505837_1506791_-|tail	phage tail protein	tail	Q8W611	Enterobacteria_phage	36.7	2.0e-32
AMG15493.2|1508867_1510171_-|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AMG15495.2|1510057_1511194_+|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	99.7	7.3e-223
AMG15496.2|1511190_1511991_+	AAA family ATPase	NA	U5N3V8	Enterobacteria_phage	100.0	6.6e-146
AMG15497.1|1512340_1512583_+	hypothetical protein	NA	Q8W639	Enterobacteria_phage	95.0	3.5e-34
AMG15498.1|1512582_1512957_+	RusA family crossover junction endodeoxyribonuclease	NA	V5URS4	Shigella_phage	62.2	2.9e-35
AMG15499.1|1512953_1513808_+	antitermination protein	NA	K7P7B9	Enterobacteria_phage	59.0	9.7e-79
AMG15500.1|1514300_1514627_+	hypothetical protein	NA	NA	NA	NA	NA
AMG15501.1|1515074_1515410_-	anti-adapter protein IraM	NA	Q8HAJ1	Enterobacteria_phage	73.8	3.4e-43
AVH84619.1|1515670_1515844_+	DUF1737 domain-containing protein	NA	Q5MBW4	Stx1-converting_phage	95.3	2.1e-17
AMG15502.2|1515840_1516997_-|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AMG15505.1|1518089_1518413_-	hypothetical protein	NA	NA	NA	NA	NA
AMG15506.1|1518580_1519000_-	hypothetical protein	NA	NA	NA	NA	NA
AMG15507.1|1518999_1519290_-	hypothetical protein	NA	NA	NA	NA	NA
AMG15508.1|1519428_1519614_+	hypothetical protein	NA	NA	NA	NA	NA
AMG15509.1|1519610_1519901_-	hypothetical protein	NA	NA	NA	NA	NA
AVH84620.1|1521153_1521816_-	DNA methylase	NA	NA	NA	NA	NA
AMG15511.1|1522184_1522736_-	recombinase family protein	NA	G8I4U3	Mycobacterium_phage	40.9	8.6e-28
AVH84621.1|1523322_1523670_+	DUF72 domain-containing protein	NA	NA	NA	NA	NA
AMG15512.1|1523722_1524118_+	hypothetical protein	NA	NA	NA	NA	NA
AMG15513.1|1524158_1524902_+	carboxy-S-adenosyl-L-methionine synthase CmoA	NA	F5B419	Synechococcus_phage	30.0	2.7e-24
AMG15514.1|1524898_1525870_+|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	tRNA	NA	NA	NA	NA
AMG18542.2|1526034_1528416_-	molybdopterin guanine dinucleotide-containing S/N-oxide reductase	NA	NA	NA	NA	NA
AMG15515.2|1528408_1529565_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	3.6e-68
AVH84622.1|1529626_1529731_-	transcriptional initiation protein Tat	NA	NA	NA	NA	NA
AMG15517.1|1529755_1530856_-	cytochrome C	NA	NA	NA	NA	NA
AMG15518.1|1531243_1531990_-	copper homeostasis protein CutC	NA	NA	NA	NA	NA
AMG15519.1|1532003_1532570_-	VOC family protein	NA	NA	NA	NA	NA
AMG15520.1|1532785_1534522_+|tRNA	arginine--tRNA ligase	tRNA	A0A1V0SIS8	Klosneuvirus	34.7	1.1e-84
AMG15522.1|1539696_1540341_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
AMG15523.1|1540351_1540741_-	two-component system response regulator	NA	A0A2K9L4R0	Tupanvirus	32.0	1.3e-06
AMG15524.1|1540755_1541805_-	chemotaxis response regulator protein-glutamate methylesterase	NA	Q56AR1	Bacillus_thuringiensis_phage	32.8	1.0e-05
AMG15525.1|1541807_1542668_-	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA	NA
AMG15526.1|1542686_1544288_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	29.7	6.4e-15
AMG15527.1|1544333_1545995_-	methyl-accepting chemotaxis protein II	NA	A0A2H4J162	uncultured_Caudovirales_phage	38.4	7.6e-11
AMG15528.1|1546139_1546643_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AMG15529.2|1546663_1548628_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
AMG15530.1|1548632_1549559_-	motility protein MotB	NA	NA	NA	NA	NA
AMG15531.1|1549555_1550443_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AMG15532.1|1550568_1551147_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AMG15533.1|1551149_1551500_-	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AMG15535.2|1551591_1552747_+|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
>prophage 12
CP014099	Shigella sonnei strain FDAARGOS_90, complete genome	4878943	1695865	1753944	4878943	transposase	Enterobacteria_phage(38.46%)	55	NA	NA
AMG15678.2|1695865_1697138_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AMG15679.1|1698026_1699562_+|transposase	IS21-like element ISSso4 family transposase	transposase	K4I413	Acidithiobacillus_phage	40.6	4.3e-101
AMG15680.1|1699578_1700334_+	AAA family ATPase	NA	K4HZD4	Acidithiobacillus_phage	43.4	2.4e-44
AMG15681.1|1700691_1701888_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AMG15682.1|1702184_1702760_+	recombinase family protein	NA	A0A1S5Y2X8	uncultured_archaeal_virus	39.3	9.6e-22
AVH84634.1|1703087_1704137_+	multidrug transporter MdtG	NA	NA	NA	NA	NA
AVH84635.1|1704219_1704594_+	secY/secA suppressor protein	NA	NA	NA	NA	NA
AMG15684.1|1704594_1704822_-	YceK/YidQ family lipoprotein	NA	NA	NA	NA	NA
AMG15685.1|1704874_1706203_-|transposase	IS4-like element IS4 family transposase	transposase	NA	NA	NA	NA
AMG18546.2|1706433_1708977_-	glucan biosynthesis protein H	NA	NA	NA	NA	NA
AMG15686.2|1708969_1710505_-	glucan biosynthesis protein G	NA	NA	NA	NA	NA
AMG15687.1|1710576_1710708_+	hypothetical protein	NA	NA	NA	NA	NA
AMG15688.1|1710711_1710855_+	hypothetical protein	NA	NA	NA	NA	NA
AMG15689.1|1710899_1712057_+	glucan biosynthesis protein C	NA	NA	NA	NA	NA
AMG18547.1|1712064_1713486_-	phospholipase D family protein	NA	NA	NA	NA	NA
AMG15690.1|1713487_1714021_-	O-acetyl-ADP-ribose deacetylase	NA	Q71G61	Red_sea_bream_iridovirus	40.2	5.9e-26
AMG15691.1|1714115_1714427_-	type 1 fimbrial protein	NA	NA	NA	NA	NA
AMG15692.1|1714547_1714880_-	curli assembly protein CsgC	NA	NA	NA	NA	NA
AMG15693.2|1714986_1715787_-	AAA family ATPase	NA	U5N3V8	Enterobacteria_phage	100.0	6.6e-146
AMG15694.1|1715783_1716956_-|transposase	IS21-like element IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	100.0	2.2e-230
AMG15695.1|1717071_1717524_-	major curlin subunit CsgA	NA	NA	NA	NA	NA
AMG15696.1|1717564_1718020_-	minor curlin subunit	NA	NA	NA	NA	NA
AMG15699.1|1720464_1720977_+	transcriptional regulator CsgD	NA	NA	NA	NA	NA
AMG15700.1|1720981_1721371_+	curli production assembly/transport component CsgE	NA	NA	NA	NA	NA
AMG15701.1|1721395_1721812_+	curli production assembly/transport component CsgF	NA	NA	NA	NA	NA
AMG15702.1|1721838_1722672_+	curli production assembly/transport protein CsgG	NA	M1ICK2	Pelagibacter_phage	39.7	4.3e-39
AMG18548.1|1722736_1723228_-	hypothetical protein	NA	NA	NA	NA	NA
AMG15703.1|1723329_1723884_-	molecular chaperone	NA	NA	NA	NA	NA
AMG15704.1|1723907_1724645_-	phosphatase	NA	NA	NA	NA	NA
AMG15705.1|1724699_1725638_-	glyoxylate/hydroxypyruvate reductase GhrA	NA	NA	NA	NA	NA
AMG18549.2|1726230_1726917_-	DUF2726 domain-containing protein	NA	NA	NA	NA	NA
AVH84636.1|1727497_1728562_-	phosphate starvation-inducible protein PhoH	NA	R4II13	Cronobacter_phage	76.2	3.4e-89
AMG15707.1|1728906_1730178_-	deferrochelatase/peroxidase EfeB	NA	NA	NA	NA	NA
AMG15708.1|1730183_1731311_-	iron uptake system component EfeO	NA	NA	NA	NA	NA
AMG15709.1|1731368_1732199_-	ferrous iron permease EfeU	NA	NA	NA	NA	NA
AVH84637.1|1732532_1732790_-	hypothetical protein	NA	NA	NA	NA	NA
AMG15711.1|1732864_1734373_-	sodium/proline symporter PutP	NA	NA	NA	NA	NA
AMG15712.1|1734794_1738757_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AMG15713.1|1738796_1739435_-	pyrimidine utilization regulatory protein R	NA	NA	NA	NA	NA
AMG18550.1|1741590_1742283_+	peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB	NA	NA	NA	NA	NA
AMG15716.1|1743464_1744265_+	pyrimidine utilization protein D	NA	NA	NA	NA	NA
AMG15717.1|1744274_1744865_+	nitroreductase family protein	NA	NA	NA	NA	NA
AMG15718.1|1744875_1745370_+	FMN reductase	NA	Q9KX93	Enterobacteria_phage	96.9	1.1e-50
AMG15719.1|1745390_1746719_+	pyrimidine utilization transport protein G	NA	Q9KX94	Enterobacteria_phage	99.1	1.1e-233
AMG15720.1|1746976_1747150_-	stress-induced protein	NA	Q9KX95	Enterobacteria_phage	96.3	4.9e-06
AMG15721.1|1747082_1747319_-	hypothetical protein	NA	NA	NA	NA	NA
AMG15722.1|1747876_1748446_-	recombinase family protein	NA	A0A219Y9V9	Aeromonas_phage	37.1	3.1e-20
AVH84638.1|1748961_1749624_+	DNA methylase	NA	NA	NA	NA	NA
AMG15723.1|1750006_1750960_+	hypothetical protein	NA	NA	NA	NA	NA
AMG15724.1|1750959_1751256_+	hypothetical protein	NA	NA	NA	NA	NA
AMG18551.1|1751579_1751870_+	hypothetical protein	NA	NA	NA	NA	NA
AMG15725.1|1751869_1752091_+	hypothetical protein	NA	NA	NA	NA	NA
AMG15726.1|1752090_1752306_+	hypothetical protein	NA	NA	NA	NA	NA
AMG15727.1|1752452_1752758_+	hypothetical protein	NA	NA	NA	NA	NA
AMG15728.1|1753233_1753944_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 13
CP014099	Shigella sonnei strain FDAARGOS_90, complete genome	4878943	1845025	1920640	4878943	transposase,tRNA,protease	Bacillus_phage(21.05%)	58	NA	NA
AMG15800.1|1845025_1846426_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2K9V902	Bandra_megavirus	36.1	5.3e-82
AMG15801.1|1847027_1848116_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	54.0	7.0e-98
AMG18562.2|1848131_1848314_-	hypothetical protein	NA	NA	NA	NA	NA
AMG15802.1|1848300_1849491_+	aspartate aminotransferase	NA	NA	NA	NA	NA
AMG15803.1|1849712_1850360_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AMG18563.1|1850386_1850935_-	DUF882 domain-containing protein	NA	A0A0K1LKR7	Rhodobacter_phage	33.7	7.0e-06
AMG15804.1|1851115_1852963_-	L,D-transpeptidase	NA	NA	NA	NA	NA
AMG15805.1|1853170_1854499_-|transposase	IS4-like element IS4 family transposase	transposase	NA	NA	NA	NA
AMG15806.1|1854661_1859122_-	chromosome partition protein MukB	NA	NA	NA	NA	NA
AMG15807.1|1859121_1859826_-	chromosome partition protein MukE	NA	NA	NA	NA	NA
AMG15808.1|1859806_1861129_-	chromosome partition protein MukF	NA	NA	NA	NA	NA
AMG15809.1|1861125_1861911_-|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	tRNA	NA	NA	NA	NA
AMG15810.1|1862046_1862826_+	envelope biogenesis factor ElyC	NA	NA	NA	NA	NA
AMG15811.1|1862802_1863696_-	hypothetical protein	NA	NA	NA	NA	NA
AMG15812.1|1863849_1864596_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AMG15813.1|1864592_1864775_-	protein YcaR	NA	NA	NA	NA	NA
AMG15814.1|1864826_1866059_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AMG15815.1|1866095_1867082_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AMG15816.1|1867078_1868827_-	lipid A export ATP-binding/permease MsbA	NA	W8CYL7	Bacillus_phage	29.8	2.5e-57
AVH84641.1|1868863_1871128_-	ComEC family protein	NA	NA	NA	NA	NA
AMG15817.1|1871334_1871619_-	integration host factor subunit beta	NA	A7KV42	Bacillus_phage	40.2	3.2e-10
AMG15818.1|1871778_1873452_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
AMG15819.1|1873562_1874246_-	cytidylate kinase	NA	NA	NA	NA	NA
AMG15820.1|1874418_1875183_-|protease	metalloprotease	protease	NA	NA	NA	NA
AMG15821.1|1875318_1876647_-|transposase	IS4-like element IS4 family transposase	transposase	NA	NA	NA	NA
AVH84642.1|1876790_1878074_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AMG15822.1|1878144_1879233_-	3-phosphoserine/phosphohydroxythreonine aminotransferase	NA	M1Q1P2	Streptococcus_phage	46.8	3.5e-81
AMG15823.1|1879431_1880124_-	DUF421 domain-containing protein	NA	NA	NA	NA	NA
AMG18564.1|1880253_1882014_+	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA	NA
AMG15824.1|1882419_1883277_+	formate transporter FocA	NA	NA	NA	NA	NA
AMG15825.1|1883331_1885614_+	formate acetyltransferase 1	NA	A0A2P0VNR5	Tetraselmis_virus	41.5	1.0e-162
AMG15826.1|1885805_1886546_+	pyruvate formate lyase-activating protein	NA	A0A2P0VNQ0	Tetraselmis_virus	26.5	8.0e-21
AVH84643.1|1886638_1886815_-	NAD(P)H oxidoreductase	NA	NA	NA	NA	NA
AMG15828.1|1890240_1891389_-	MFS transporter	NA	NA	NA	NA	NA
AMG15829.1|1891703_1892330_+	hydrolase	NA	NA	NA	NA	NA
AMG15830.1|1892365_1893229_-	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA	NA
AMG15831.1|1893230_1893848_-	dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	60.6	5.0e-77
AMG15832.1|1893858_1896303_-	dimethylsulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	49.8	8.6e-221
AMG15833.1|1896541_1897834_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.2	1.5e-94
AMG15834.1|1897924_1899268_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	40.6	3.6e-80
AMG15835.1|1899278_1899890_-	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AMG15836.1|1900044_1904112_-	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	48.7	1.2e-86
AMG15837.1|1904246_1904741_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA	NA
AMG15838.1|1905285_1906251_+	thioredoxin reductase	NA	A0A2I2L5E1	Orpheovirus	44.6	8.5e-63
AMG15839.1|1906373_1908140_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	22.3	5.4e-23
AMG15840.1|1908140_1909862_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	NA	W8CYL7	Bacillus_phage	26.2	4.0e-23
AMG15841.1|1909903_1910608_+|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
AMG15842.1|1910892_1911111_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
AVH84840.1|1911627_1911849_+	hypothetical protein	NA	NA	NA	NA	NA
AMG15843.1|1911857_1914134_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.5	1.9e-166
AMG15844.1|1914164_1914485_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	44.4	1.6e-13
AVH84644.1|1914626_1914872_+	hypothetical protein	NA	NA	NA	NA	NA
AMG15845.1|1915124_1915406_-	hypothetical protein	NA	NA	NA	NA	NA
AMG18565.1|1915443_1915698_+	hypothetical protein	NA	NA	NA	NA	NA
AMG15846.1|1917528_1917723_-	hypothetical protein	NA	NA	NA	NA	NA
AMG15847.1|1918191_1918614_-	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
AMG15848.1|1918610_1918856_-	hypothetical protein	NA	NA	NA	NA	NA
AMG15850.2|1919483_1920640_-|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
>prophage 14
CP014099	Shigella sonnei strain FDAARGOS_90, complete genome	4878943	2017561	2106071	4878943	head,terminase,integrase,lysis,transposase,tail	Salmonella_phage(12.5%)	86	2049424:2049440	2094132:2094148
AMG15940.1|2017561_2018890_+|transposase	IS4-like element IS4 family transposase	transposase	NA	NA	NA	NA
AMG15941.1|2020934_2021612_+	PKHD-type hydroxylase	NA	Q5GQB0	Synechococcus_phage	29.7	5.8e-18
AMG15942.1|2021685_2021952_+	DksA/TraR family C4-type zinc finger protein	NA	E5G6L7	Salmonella_phage	45.6	6.9e-07
AMG15943.1|2022216_2022477_+	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
AMG15944.1|2022705_2023791_-	dehydrogenase	NA	NA	NA	NA	NA
AMG15945.1|2023931_2024894_-	DNA-binding protein YbiB	NA	NA	NA	NA	NA
AMG18568.1|2024921_2027072_-	ATP-dependent DNA helicase DinG	NA	A0A127AW80	Bacillus_phage	26.1	6.3e-42
AMG15946.2|2027191_2027674_+	Swarming motility protein YbiA	NA	A0A0H3TLU0	Faustovirus	52.0	1.7e-35
AMG15948.1|2027905_2029270_-	ATP-dependent RNA helicase RhlE	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.2	1.9e-52
AMG18569.1|2029498_2030170_+	transcriptional regulator	NA	NA	NA	NA	NA
AMG15949.2|2030169_2031168_+	secretion protein HlyD	NA	NA	NA	NA	NA
AMG15950.1|2031160_2032897_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	29.8	1.8e-18
AMG15951.1|2032889_2034023_+	inner membrane transport permease YbhS	NA	NA	NA	NA	NA
AMG15952.1|2034033_2035140_+	inner membrane transport permease YbhR	NA	NA	NA	NA	NA
AMG15953.1|2035101_2035512_-	hypothetical protein	NA	NA	NA	NA	NA
AMG15954.1|2035644_2036406_+	EEP domain-containing protein	NA	NA	NA	NA	NA
AMG15955.1|2036402_2037644_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AMG15956.1|2039337_2040042_-	hypothetical protein	NA	NA	NA	NA	NA
AMG15957.1|2040178_2040631_-	molybdopterin synthase catalytic subunit MoaE	NA	NA	NA	NA	NA
AMG15958.1|2040632_2040878_-	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA	NA
AMG15959.1|2040870_2041356_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AMG15960.1|2041358_2041871_-	molybdenum cofactor biosynthesis protein	NA	NA	NA	NA	NA
AMG15961.1|2041892_2042882_-	cyclic pyranopterin monophosphate synthase	NA	NA	NA	NA	NA
AMG15962.1|2043278_2044187_+	hypothetical protein	NA	A1IMD5	Streptococcus_phage	31.1	1.4e-27
AVH84648.1|2044378_2046400_-	excinuclease ABC subunit B	NA	NA	NA	NA	NA
AMG15963.1|2046978_2047656_-	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA	NA
AMG15964.1|2047648_2048404_-	malonyl-[acyl-carrier protein] O-methyltransferase BioC	NA	NA	NA	NA	NA
AMG15965.1|2048390_2049545_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
2049424:2049440	attL	TACTGGCGATCATCCGC	NA	NA	NA	NA
AMG15966.1|2049541_2050582_-	biotin synthase	NA	NA	NA	NA	NA
AMG15967.2|2050668_2051958_+	adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA	NA	A0A1V0SKB7	Klosneuvirus	27.5	5.3e-20
AMG15968.1|2052016_2052493_+	kinase inhibitor	NA	NA	NA	NA	NA
AVH84649.1|2052407_2052587_+	hypothetical protein	NA	NA	NA	NA	NA
AMG15970.1|2053074_2054838_+	invasion plasmid antigen	NA	NA	NA	NA	NA
AMG15971.1|2054838_2055018_-	hypothetical protein	NA	NA	NA	NA	NA
AMG15972.1|2055017_2055641_-	DUF4376 domain-containing protein	NA	A0A0U2QQK4	Escherichia_phage	76.5	5.4e-79
AMG15973.2|2055591_2056845_-|tail	phage tail protein	tail	Q8W611	Enterobacteria_phage	40.2	1.3e-63
AVH84650.1|2056860_2058016_+|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AMG18571.1|2058164_2058857_+|integrase	integrase	integrase	K7P6P6	Enterobacteria_phage	99.1	1.6e-124
AMG15975.1|2058991_2060275_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AMG15976.1|2060508_2062689_-	hydratase	NA	NA	NA	NA	NA
AMG15978.1|2063643_2064597_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AMG15979.1|2064637_2065633_-	6-phosphogluconolactonase	NA	NA	NA	NA	NA
AVH84651.1|2065892_2066024_-	DNA invertase	NA	A0A0C4UR34	Shigella_phage	84.4	8.8e-08
AMG15981.1|2066823_2067330_-	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	79.9	3.7e-70
AMG15982.1|2067333_2068554_-	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	86.1	4.5e-194
AMG18572.2|2068557_2069301_-|head	phage head morphogenesis protein	head	A0A0M4REK0	Salmonella_phage	84.4	5.3e-89
AMG15985.1|2070657_2072061_-|terminase	PBSX family phage terminase large subunit	terminase	A0A077KAW0	Edwardsiella_phage	69.0	1.2e-187
AMG15986.1|2072011_2072776_-	hypothetical protein	NA	G8C7P2	Escherichia_phage	53.8	5.9e-11
AMG15987.1|2072973_2073483_+	DedA family protein	NA	NA	NA	NA	NA
AMG15988.1|2073571_2074042_-|lysis	lysis protein	lysis	Q9AZ06	Salmonella_phage	94.8	2.2e-72
AMG15989.1|2074038_2074536_-	lysozyme	NA	A0A0N7KZA0	Stx2-converting_phage	96.4	3.9e-88
AVH84652.1|2074444_2074639_-	hypothetical protein	NA	NA	NA	NA	NA
AMG15991.2|2074604_2075877_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AVH84653.1|2077757_2078054_-	hypothetical protein	NA	NA	NA	NA	NA
AVH84654.1|2078167_2079335_+|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	99.7	5.8e-183
AMG15997.1|2080062_2080218_-	DUF1391 domain-containing protein	NA	M4QQ57	Salicola_phage	53.2	1.8e-07
AMG15998.1|2080420_2080828_-	transcriptional regulator	NA	I6PD69	Cronobacter_phage	49.6	1.7e-28
AMG15999.1|2080904_2081132_+	transcriptional regulator	NA	NA	NA	NA	NA
AMG16000.2|2081141_2081537_+	hypothetical protein	NA	A0A0U2RXZ9	Escherichia_phage	92.2	1.6e-60
AMG16001.2|2081764_2082921_-|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AMG16003.1|2083668_2084415_+	DNA replication protein DnaC	NA	V5UQI5	Shigella_phage	81.7	2.0e-112
AMG16004.1|2084429_2084852_+	hypothetical protein	NA	A0A2I6TCA7	Escherichia_phage	76.6	5.9e-53
AMG18573.1|2084909_2085266_+	hypothetical protein	NA	A0A2R2Z307	Escherichia_phage	99.2	1.4e-58
AMG16005.1|2085434_2086100_+	hypothetical protein	NA	NA	NA	NA	NA
AMG16006.1|2086270_2086483_+	Hok/Gef family protein	NA	A0A0P0ZAX5	Stx2-converting_phage	90.0	4.0e-26
AMG16007.1|2086732_2087020_+	hypothetical protein	NA	NA	NA	NA	NA
AMG16008.2|2087408_2088565_-|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AVH84655.1|2088642_2089086_+|integrase	integrase	integrase	K7PHK0	Enterobacteria_phage	49.3	9.9e-35
AVH84656.1|2089262_2089391_+	hydrolase	NA	NA	NA	NA	NA
AMG16010.1|2089391_2090450_-	molybdenum import ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	35.9	1.5e-20
AMG16011.1|2090452_2091142_-	molybdenum ABC transporter permease	NA	NA	NA	NA	NA
AMG16012.1|2091141_2091915_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AMG16013.1|2092080_2092230_-	multidrug efflux pump accessory protein AcrZ	NA	NA	NA	NA	NA
AMG16014.1|2092358_2093147_+	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AMG16015.1|2093214_2094687_+	molybdate ABC transporter ATP-binding protein ModF	NA	A0A1M7XV31	Cedratvirus	28.3	7.2e-13
2094132:2094148	attR	TACTGGCGATCATCCGC	NA	NA	NA	NA
AMG16016.1|2094947_2095964_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	46.0	1.0e-79
AMG16017.1|2095973_2097020_+	galactose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
AMG16018.1|2097023_2098172_+	galactokinase	NA	NA	NA	NA	NA
AMG16019.1|2098165_2099206_+	galactose-1-epimerase	NA	NA	NA	NA	NA
AMG16020.1|2099408_2100161_+	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA	NA
AMG16021.1|2100319_2101372_-	3-deoxy-7-phosphoheptulonate synthase	NA	A0A2I6UFP9	Klebsiella_phage	49.4	8.9e-82
AMG16022.1|2101687_2102068_+	hypothetical protein	NA	NA	NA	NA	NA
AMG16023.1|2102181_2103123_+	zinc transporter ZitB	NA	A0A1V0SED0	Indivirus	28.4	7.5e-24
AMG16024.1|2103119_2103839_-	nicotinamide riboside transporter PnuC	NA	A0A126HGA3	Vibrio_phage	32.7	9.2e-22
AMG16025.2|2104101_2104902_-	AAA family ATPase	NA	U5N3V8	Enterobacteria_phage	100.0	6.6e-146
AMG16026.1|2104898_2106071_-|transposase	IS21-like element IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	100.0	2.2e-230
>prophage 15
CP014099	Shigella sonnei strain FDAARGOS_90, complete genome	4878943	2481255	2590457	4878943	transposase,plate	Shigella_phage(15.38%)	90	NA	NA
AMG16357.2|2481255_2482528_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AMG16358.1|2483028_2483700_+	PIG-L family deacetylase	NA	NA	NA	NA	NA
AMG16361.1|2485467_2486241_+	YaiO family outer membrane beta-barrel protein	NA	NA	NA	NA	NA
AMG16362.1|2486428_2486704_+	transcriptional regulator	NA	NA	NA	NA	NA
AMG16363.1|2486738_2487848_+	S-(hydroxymethyl)glutathione dehydrogenase	NA	A0A0K0KVL7	Prochlorococcus_phage	28.6	1.2e-31
AMG16364.1|2487940_2488774_+	S-formylglutathione hydrolase FrmB	NA	NA	NA	NA	NA
AVH84681.1|2488743_2488971_-	hypothetical protein	NA	NA	NA	NA	NA
AMG16365.1|2488999_2489539_-	DUF2058 domain-containing protein	NA	NA	NA	NA	NA
AMG16366.1|2489640_2490852_-	3-(3-hydroxy-phenyl)propionate transporter MhpT	NA	NA	NA	NA	NA
AMG16367.1|2491138_2492152_-	4-hydroxy-2-oxovalerate aldolase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	30.8	7.1e-44
AMG16368.1|2492148_2493099_-	acetaldehyde dehydrogenase	NA	G9E526	Ostreococcus_lucimarinus_virus	35.2	8.7e-36
AMG16369.1|2493095_2493905_-	2-keto-4-pentenoate hydratase	NA	NA	NA	NA	NA
AMG16371.2|2494487_2495643_+|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AMG16372.2|2495688_2496916_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.3e-177
AMG16373.2|2497162_2498047_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	41.4	2.8e-52
AMG16374.1|2498206_2498800_-	protein RclC	NA	NA	NA	NA	NA
AMG16375.1|2498811_2499048_-	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
AMG16376.1|2499156_2500482_-	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	47.8	1.1e-113
AMG16377.1|2500707_2501562_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AMG16378.1|2502089_2502809_+	(Fe-S)-binding protein	NA	NA	NA	NA	NA
AMG16379.1|2502819_2504247_+	iron-sulfur cluster-binding protein	NA	NA	NA	NA	NA
AMG16380.1|2504239_2504935_+	lactate utilization protein C	NA	NA	NA	NA	NA
AVH84844.1|2504889_2505045_-	hypothetical protein	NA	NA	NA	NA	NA
AMG16382.1|2506089_2506953_+	DUF2877 domain-containing protein	NA	NA	NA	NA	NA
AMG16383.1|2506942_2508490_+	acyl-CoA synthetase FdrA	NA	NA	NA	NA	NA
AMG16384.1|2508489_2509848_+	DUF1116 domain-containing protein	NA	NA	NA	NA	NA
AMG16385.1|2509990_2510941_+	carbamate kinase	NA	NA	NA	NA	NA
AMG16386.1|2510950_2512333_+	deaminase	NA	NA	NA	NA	NA
AMG16387.1|2512709_2513759_+	NAD(P)-dependent alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	45.0	1.4e-71
AMG16389.1|2514778_2515594_+	hypothetical protein	NA	NA	NA	NA	NA
AMG16390.2|2515802_2516959_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	3.0e-67
AMG16392.1|2517273_2517519_+	hypothetical protein	NA	NA	NA	NA	NA
AMG16393.2|2517535_2518183_-	hypothetical protein	NA	NA	NA	NA	NA
AMG16396.1|2519281_2522356_-	beta-galactosidase	NA	L0N6M2	Herpes_simplex_virus	97.9	0.0e+00
AMG18588.2|2522478_2523561_-	lactose operon repressor	NA	C6ZCU4	Enterobacteria_phage	100.0	7.5e-193
AMG16399.1|2524512_2526177_+	bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase	NA	NA	NA	NA	NA
AMG16400.1|2526178_2527123_+	2,3-dihydroxyphenylpropionate/2, 3-dihydroxicinnamic acid 1,2-dioxygenase	NA	NA	NA	NA	NA
AMG16401.2|2527544_2528701_-|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AMG16403.1|2528855_2529827_-	hypothetical protein	NA	I7HJD8	Enterobacteria_phage	32.7	5.6e-14
AMG16405.1|2530777_2531809_-|transposase	IS630 family transposase IS630	transposase	NA	NA	NA	NA
AMG16407.2|2532560_2533716_+|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AVH84682.1|2534032_2534368_-	hypothetical protein	NA	NA	NA	NA	NA
AVH84683.1|2535099_2535414_+	hypothetical protein	NA	NA	NA	NA	NA
AMG16409.1|2535662_2536916_-	gamma-glutamyl-phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	47.2	9.8e-96
AMG16410.1|2536927_2538031_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.1e-61
AMG16411.1|2538318_2539374_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	61.1	9.1e-119
AMG16412.1|2539412_2539814_-	sigma factor-binding protein Crl	NA	NA	NA	NA	NA
AMG16413.1|2539871_2541116_-	esterase	NA	NA	NA	NA	NA
AMG16414.1|2541207_2541666_-	xanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
AMG16415.1|2541926_2543384_+	cytosol nonspecific dipeptidase	NA	NA	NA	NA	NA
AMG18589.1|2543440_2544055_-	peptide chain release factor H	NA	NA	NA	NA	NA
AMG16417.1|2544897_2546094_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AVH84684.1|2546072_2546666_-	RNA ligase RtcB family protein	NA	A0A0A0RRX9	Bacillus_phage	31.1	1.6e-08
AVH84685.1|2546586_2546850_-	hypothetical protein	NA	NA	NA	NA	NA
AMG18590.2|2546884_2547337_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AMG16418.1|2547333_2548389_-	DNA polymerase IV	NA	NA	NA	NA	NA
AMG18591.1|2548459_2549230_-	putative lateral flagellar export/assembly protein LafU	NA	NA	NA	NA	NA
AMG16419.1|2549189_2550929_+	flagellar type III secretion system protein FlhA	NA	NA	NA	NA	NA
AMG16420.1|2551051_2551549_-|transposase	transposase	transposase	NA	NA	NA	NA
AVH84845.1|2551619_2551922_-|transposase	transposase	transposase	NA	NA	NA	NA
AVH84846.1|2551817_2552078_+	hypothetical protein	NA	Q71TE9	Escherichia_phage	97.7	5.2e-44
AMG16421.1|2551996_2552500_+|transposase	IS1 family transposase	transposase	U5P0U6	Shigella_phage	98.8	1.1e-93
AMG16422.1|2552788_2553538_-	peptidoglycan endopeptidase	NA	A0A1V0DZX6	Clostridioides_phage	37.7	1.2e-19
AMG16423.1|2553747_2554008_+	type II toxin-antitoxin system antitoxin DinJ	NA	NA	NA	NA	NA
AMG16424.1|2554010_2554289_+	type II toxin-antitoxin system mRNA interferase toxin YafQ	NA	NA	NA	NA	NA
AMG16425.1|2554444_2555185_+	transpeptidase	NA	NA	NA	NA	NA
AMG16426.1|2555155_2555923_-	class II glutamine amidotransferase	NA	NA	NA	NA	NA
AMG16427.1|2556128_2556707_-	phosphoheptose isomerase	NA	A0A067XQR2	Caulobacter_phage	32.0	1.1e-14
AMG16428.1|2556946_2559391_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AMG16429.2|2559433_2559907_-	C-lysozyme inhibitor	NA	NA	NA	NA	NA
AMG16430.1|2560060_2560831_+	amidohydrolase	NA	NA	NA	NA	NA
AMG16431.1|2560872_2562009_-|transposase	ISAs1 family transposase	transposase	NA	NA	NA	NA
AMG16432.1|2562477_2562855_-	hypothetical protein	NA	NA	NA	NA	NA
AMG18592.1|2564700_2565150_-	hypothetical protein	NA	NA	NA	NA	NA
AMG16436.1|2565161_2569370_-	type IV secretion protein Rhs	NA	A0A2H4JHK7	uncultured_Caudovirales_phage	44.2	1.1e-21
AMG16437.1|2569445_2571587_-	type VI secretion system tip protein VgrG	NA	A0A077K8Q4	Ralstonia_phage	25.2	2.8e-26
AMG16438.1|2571626_2571764_-	hypothetical protein	NA	NA	NA	NA	NA
AMG16439.1|2571796_2572315_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
AMG16441.1|2573011_2573512_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
AMG16442.1|2573546_2573771_+	hypothetical protein	NA	NA	NA	NA	NA
AMG16443.1|2575303_2575717_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
AVH84686.1|2575720_2577571_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
AMG16444.1|2577534_2578617_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
AMG16445.1|2578641_2579922_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA	NA
AMG16446.1|2579918_2580443_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
AMG16447.1|2581779_2582541_+	hypothetical protein	NA	NA	NA	NA	NA
AMG16450.1|2585329_2586073_+	type VI secretion system-associated protein TagO	NA	NA	NA	NA	NA
AMG16451.1|2586077_2587490_+	type VI secretion system protein TssA	NA	NA	NA	NA	NA
AVH84687.1|2587508_2589188_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA	NA
AMG16453.2|2589184_2590457_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
>prophage 16
CP014099	Shigella sonnei strain FDAARGOS_90, complete genome	4878943	2624530	2694465	4878943	transposase,tRNA,protease	Shigella_phage(18.18%)	58	NA	NA
AMG16482.1|2624530_2625859_+|transposase	IS4-like element IS4 family transposase	transposase	NA	NA	NA	NA
AMG16483.1|2625907_2626867_-	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA	NA
AMG16484.1|2626879_2630362_-	DNA polymerase III subunit alpha	NA	Q8W6C3	Saccharomonospora_phage	37.0	7.4e-210
AMG16485.1|2630398_2630995_-	ribonuclease HII	NA	V5LS49	Emiliania_huxleyi_virus	40.0	1.0e-26
AMG16486.1|2630991_2632140_-	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
AMG16487.1|2632139_2632928_-	acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
AMG16488.1|2632931_2633387_-	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
AMG16489.1|2633491_2634517_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
AMG16490.1|2634520_2635006_-	chaperone protein Skp	NA	NA	NA	NA	NA
AMG16491.1|2635127_2637560_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
AMG16492.1|2637589_2638942_-	zinc metallopeptidase RseP	NA	NA	NA	NA	NA
AMG16493.1|2638953_2639811_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
AMG16494.1|2639823_2640582_-	(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase	NA	R9W0U9	Flavobacterium_phage	44.4	7.7e-27
AMG16495.1|2640770_2641967_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
AMG16496.1|2642058_2642616_-	ribosome-recycling factor	NA	NA	NA	NA	NA
AMG16497.1|2642907_2643633_-	UMP kinase	NA	NA	NA	NA	NA
AMG16498.1|2643779_2644631_-	elongation factor Ts	NA	NA	NA	NA	NA
AVH84689.1|2644649_2644937_+	hypothetical protein	NA	NA	NA	NA	NA
AMG16499.1|2644888_2645614_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
AMG16500.1|2645981_2646776_+	methionine aminopeptidase	NA	NA	NA	NA	NA
AMG16501.1|2646837_2649510_+	bifunctional uridylyltransferase/uridylyl-removing protein	NA	NA	NA	NA	NA
AMG16502.1|2649540_2650365_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AMG16503.1|2650419_2651232_+	phosphodiesterase	NA	NA	NA	NA	NA
AMG16504.1|2651393_2651780_+	hypothetical protein	NA	NA	NA	NA	NA
AMG16505.1|2651868_2653026_-	carbohydrate diacid regulon transcriptional regulator CdaR	NA	NA	NA	NA	NA
AMG16506.1|2653180_2654605_-|protease	periplasmic serine endoprotease DegP	protease	A0A1B1IT49	uncultured_Mediterranean_phage	28.8	1.9e-26
AVH84690.1|2656168_2657029_-	dGTPase	NA	NA	NA	NA	NA
AMG16508.1|2657112_2657811_+	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	NA	NA	NA	NA	NA
AMG16509.1|2657803_2658604_+	cobalamin-binding protein	NA	NA	NA	NA	NA
AMG16510.1|2658641_2659265_+	hypothetical protein	NA	NA	NA	NA	NA
AMG16511.1|2659311_2659656_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	51.4	4.5e-27
AMG16512.1|2659737_2661159_-	ClC family H(+)/Cl(-) exchange transporter	NA	NA	NA	NA	NA
AMG16513.1|2661383_2662664_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
AMG16514.1|2662821_2664804_-	Fe(3+)-hydroxamate ABC transporter permease FhuB	NA	NA	NA	NA	NA
AMG16515.1|2664800_2665691_-	Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD	NA	NA	NA	NA	NA
AMG16516.1|2665690_2666488_-	iron-hydroxamate transporter ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	26.9	6.0e-14
AMG16517.1|2666538_2668728_-	ferrichrome porin FhuA	NA	NA	NA	NA	NA
AMG16518.1|2668947_2671482_-	bifunctional glycosyl transferase/transpeptidase	NA	NA	NA	NA	NA
AMG16519.1|2671468_2671675_-	hypothetical protein	NA	NA	NA	NA	NA
AMG16520.2|2671677_2674107_-	ATP-dependent helicase HrpB	NA	A0A0G2Y9F4	Acanthamoeba_polyphaga_mimivirus	29.1	1.0e-40
AMG16521.1|2674180_2674711_+	RNA 2',3'-cyclic phosphodiesterase	NA	NA	NA	NA	NA
AMG16522.1|2674725_2675430_+	DNA/RNA nuclease SfsA	NA	NA	NA	NA	NA
AMG16523.1|2675607_2676063_+	RNA polymerase-binding transcription factor DksA	NA	NA	NA	NA	NA
AMG18593.2|2676099_2677026_+|tRNA	tRNA glutamyl-Q(34) synthetase GluQRS	tRNA	NA	NA	NA	NA
AMG16524.2|2677064_2678483_+	polynucleotide adenylyltransferase PcnB	NA	H7BUW3	unidentified_phage	37.9	3.2e-26
AMG16525.1|2678479_2678959_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AMG16526.1|2679328_2679913_+	fimbrial protein	NA	NA	NA	NA	NA
AMG16527.1|2680017_2680758_+	fimbrial chaperone	NA	NA	NA	NA	NA
AVH84691.1|2683869_2684028_-	nitrite extrusion protein 2	NA	NA	NA	NA	NA
AMG16530.1|2684040_2685072_+|transposase	IS630 family transposase IS630	transposase	NA	NA	NA	NA
AMG16531.2|2685121_2686349_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.3e-177
AMG16532.2|2686356_2686830_+	fimbrial protein	NA	NA	NA	NA	NA
AMG16533.1|2686844_2687447_+	fimbrial protein StaE	NA	NA	NA	NA	NA
AMG16534.1|2687473_2688070_+	fimbrial protein StaF	NA	NA	NA	NA	NA
AMG16535.2|2688850_2690124_-|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AMG16538.1|2691619_2692414_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	NA	NA	NA	NA
AMG16539.1|2692425_2693277_+	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AMG16540.1|2693568_2694465_-|transposase	ISNCY family transposase	transposase	Q2A0A7	Sodalis_phage	48.8	1.6e-60
>prophage 17
CP014099	Shigella sonnei strain FDAARGOS_90, complete genome	4878943	2831313	2927064	4878943	integrase,terminase,lysis,transposase,portal,tRNA,tail	Enterobacteria_phage(45.9%)	99	2871505:2871520	2935942:2935957
AMG16654.1|2831313_2832486_-|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	99.7	8.3e-230
AMG16655.2|2834019_2834229_+	regulatory protein MokC	NA	A0A0P0ZAX5	Stx2-converting_phage	73.9	8.0e-19
AMG16656.1|2834332_2835463_-	molecular chaperone DnaJ	NA	E3T4P7	Cafeteria_roenbergensis_virus	34.6	4.6e-28
AMG16657.1|2835551_2837468_-	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	51.1	6.9e-149
AMG16658.1|2837844_2838249_+	hypothetical protein	NA	NA	NA	NA	NA
AMG16659.1|2838274_2838988_+	hypothetical protein	NA	NA	NA	NA	NA
AMG16660.1|2839136_2839703_+	succinate-acetate/proton symporter SatP	NA	NA	NA	NA	NA
AMG16661.1|2839737_2840325_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AMG16662.1|2840439_2841393_-	transaldolase 1	NA	A0A127KNC6	Cyanophage	31.5	1.7e-10
AMG16664.1|2843947_2844724_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AMG16665.1|2844876_2845173_-	DUF2502 domain-containing protein	NA	NA	NA	NA	NA
AMG16667.1|2845386_2846673_-	threonine synthase	NA	NA	NA	NA	NA
AMG16668.1|2846673_2847606_-	homoserine kinase	NA	NA	NA	NA	NA
AMG16669.1|2847607_2850070_-	bifunctional aspartate kinase/homoserine dehydrogenase I	NA	NA	NA	NA	NA
AMG18602.1|2850151_2850217_-	thr operon leader peptide	NA	NA	NA	NA	NA
AMG16670.1|2850430_2851117_-|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
AMG16671.1|2851516_2851657_-	hypothetical protein	NA	NA	NA	NA	NA
AMG16672.1|2851752_2852469_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AMG16673.1|2852528_2853881_-	cell envelope integrity protein CreD	NA	NA	NA	NA	NA
AMG16674.1|2853938_2855363_-	two-component system sensor histidine kinase CreC	NA	Q8QKV7	Ectocarpus_siliculosus_virus	21.7	1.2e-09
AMG16675.1|2855362_2856052_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	35.3	2.0e-29
AMG16676.1|2856064_2856538_-	hypothetical protein	NA	NA	NA	NA	NA
AMG16677.1|2856748_2857618_+	right origin-binding protein	NA	NA	NA	NA	NA
AMG16678.1|2857614_2858262_-	phosphoglycerate mutase GpmB	NA	NA	NA	NA	NA
AMG18603.1|2858313_2858835_+	non-canonical purine NTP phosphatase	NA	NA	NA	NA	NA
AMG16679.1|2858919_2859246_-	Trp operon repressor	NA	NA	NA	NA	NA
AMG18604.1|2859335_2861273_-	murein transglycosylase	NA	A0A1P8CWQ1	Bacillus_phage	34.8	4.0e-11
AVH84848.1|2861381_2861510_-	methionine aminopeptidase	NA	NA	NA	NA	NA
AMG16680.1|2861483_2863151_+	energy-dependent translational throttle protein EttA	NA	A0A1V0SKJ1	Klosneuvirus	26.4	3.7e-42
AMG16682.1|2863457_2864690_-	trifunctional nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase/transcriptional regulator NadR	NA	A0A0C5K935	Enterococcus_phage	42.6	1.6e-82
AMG16683.1|2864710_2866093_-	DNA repair protein RadA	NA	NA	NA	NA	NA
AMG16684.1|2866141_2867110_-	phosphoserine phosphatase	NA	NA	NA	NA	NA
AMG16685.1|2867215_2867860_+	protein Smp	NA	NA	NA	NA	NA
AMG16686.1|2867887_2868904_+	lipoate--protein ligase A	NA	NA	NA	NA	NA
AMG16688.1|2869359_2870079_-	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
AMG16689.1|2870158_2871382_-	phosphopentomutase	NA	NA	NA	NA	NA
AMG16690.1|2871433_2872756_-	thymidine phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	39.8	2.3e-79
2871505:2871520	attL	TCACCGCTTTCGCCGC	NA	NA	NA	NA
AMG16691.1|2872882_2873662_-	2-deoxyribose-5-phosphate aldolase	NA	NA	NA	NA	NA
AMG16693.1|2873919_2875470_+	YjjI family glycine radical enzyme	NA	NA	NA	NA	NA
AMG16694.1|2875441_2876305_+	YjjW family glycine radical enzyme activase	NA	NA	NA	NA	NA
AMG16695.1|2876820_2877603_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
AMG16696.1|2877599_2878673_-	patatin family protein	NA	NA	NA	NA	NA
AMG16697.2|2878794_2878974_-	DUF1328 domain-containing protein	NA	A0A0N7CBR2	Salmonella_phage	64.2	2.0e-10
AMG16698.1|2879082_2879688_-	molecular chaperone OsmY	NA	NA	NA	NA	NA
AMG16699.1|2880080_2881667_-	peptide chain release factor 3	NA	D0R0F5	Streptococcus_phage	24.9	1.2e-29
AMG16701.1|2882350_2882902_+	hypothetical protein	NA	NA	NA	NA	NA
AMG16702.1|2882879_2884250_+	reverse transcriptase	NA	NA	NA	NA	NA
AMG16703.1|2884362_2884947_-|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	94.3	1.0e-103
AVH84700.1|2884946_2888237_-|tail	phage tail protein	tail	X2KTY7	Enterobacteria_phage	58.8	6.5e-06
AMG16704.1|2888301_2888901_-	Ail/Lom family protein	NA	H6WZM8	Escherichia_phage	95.0	3.2e-105
AMG16705.1|2888968_2892448_-	host specificity protein J	NA	A0A291AWT4	Escherichia_phage	90.4	0.0e+00
AMG16706.1|2892508_2893156_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	98.6	2.7e-113
AMG16707.1|2893053_2893797_-|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	98.8	6.3e-151
AMG16708.1|2893802_2894501_-|tail	phage minor tail protein L	tail	A5LH40	Enterobacteria_phage	99.6	1.3e-134
AMG16709.1|2894510_2894840_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	100.0	1.7e-60
AVH84701.1|2894839_2897905_-|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	98.7	0.0e+00
AMG16710.1|2897876_2898206_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	100.0	7.6e-56
AMG18606.1|2898214_2898601_-|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	100.0	4.3e-66
AMG16711.1|2898661_2899405_-|tail	phage tail protein	tail	A5LH35	Enterobacteria_phage	99.6	7.8e-133
AMG16712.1|2899415_2899817_-|tail	phage tail protein	tail	A5LH34	Enterobacteria_phage	99.2	1.9e-72
AMG16713.1|2899813_2900392_-|tail	phage tail protein	tail	A0A291AWZ0	Escherichia_phage	99.5	9.4e-102
AMG16714.1|2900403_2900679_-	DNA breaking-rejoining protein	NA	K7PH43	Enterobacteria_phage	98.9	8.6e-45
AMG16715.2|2900671_2901040_-	DUF2190 domain-containing protein	NA	K7PLV6	Enterobacteria_phage	100.0	9.7e-52
AMG16716.2|2901081_2903109_-	peptidase S14	NA	A5LH30	Enterobacteria_phage	99.5	0.0e+00
AMG16717.1|2903053_2904562_-|portal	phage portal protein	portal	K7PJP3	Enterobacteria_phage	99.2	2.3e-288
AMG16718.1|2904561_2904774_-	hypothetical protein	NA	A5LH28	Enterobacteria_phage	98.6	7.1e-31
AMG16719.1|2904770_2906873_-|terminase	phage terminase large subunit family protein	terminase	A0A291AWY5	Escherichia_phage	99.7	0.0e+00
AMG16720.1|2906872_2907367_-	DUF1441 domain-containing protein	NA	A0A291AWV8	Escherichia_phage	100.0	9.9e-84
AVH84702.1|2907764_2907899_+	hypothetical protein	NA	NA	NA	NA	NA
AMG16721.1|2908044_2908284_-	hypothetical protein	NA	NA	NA	NA	NA
AMG16722.1|2908330_2908792_-|lysis	lysis protein	lysis	A0A0K2FJD0	Enterobacteria_phage	67.1	4.5e-46
AMG16723.1|2908788_2909286_-	lysozyme	NA	A5LH83	Enterobacteria_phage	98.2	3.2e-90
AMG16724.1|2909285_2909501_-|lysis	lysis protein S	lysis	A5LH82	Enterobacteria_phage	100.0	9.0e-34
AMG16725.1|2909568_2910621_-	site-specific DNA-methyltransferase	NA	A5LH81	Enterobacteria_phage	99.4	4.0e-207
AMG16726.1|2910771_2910975_-	hypothetical protein	NA	A0A291AWX6	Escherichia_phage	98.5	1.8e-31
AMG16727.1|2911198_2911624_-	hypothetical protein	NA	A0A291AWZ9	Escherichia_phage	97.9	3.0e-73
AMG16728.1|2911904_2912657_-	antitermination protein	NA	Q8SBE4	Shigella_phage	98.0	1.7e-135
AMG16729.1|2912670_2913660_-	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	99.7	4.3e-195
AMG16730.1|2913667_2914477_-	KilA-N domain-containing protein	NA	A5LH75	Enterobacteria_phage	98.5	4.5e-150
AMG16731.1|2914496_2914886_-	RusA family crossover junction endodeoxyribonuclease	NA	A5LH74	Enterobacteria_phage	99.2	1.6e-68
AMG16732.1|2914882_2915209_-	LexA family transcriptional regulator	NA	A5LH73	Enterobacteria_phage	100.0	1.6e-53
AMG16733.1|2915205_2915859_-	phage N-6-adenine-methyltransferase	NA	A5LH72	Enterobacteria_phage	99.5	1.9e-127
AMG16734.2|2915858_2916353_-	PerC family transcriptional regulator	NA	U5P0U0	Shigella_phage	97.0	1.6e-86
AMG16735.1|2916349_2917168_-	helix-turn-helix domain-containing protein	NA	Q8SBF1	Shigella_phage	99.6	8.9e-122
AMG18607.1|2917164_2917389_-	hypothetical protein	NA	A0A291AX25	Escherichia_phage	98.6	7.0e-37
AMG16736.1|2917393_2918230_-	ash family protein	NA	Q8SBF3	Shigella_phage	91.7	2.6e-137
AMG16737.1|2918226_2918778_-	hypothetical protein	NA	Q8SBF4	Shigella_phage	100.0	7.6e-101
AMG16738.1|2918821_2919022_-	transcriptional regulator	NA	U5P445	Shigella_phage	100.0	7.9e-32
AMG16739.1|2919112_2919787_+	LexA family transcriptional repressor	NA	Q8SBF6	Shigella_phage	100.0	1.2e-132
AVH84703.1|2920186_2920381_-	hypothetical protein	NA	A0A291AWX8	Escherichia_phage	100.0	1.0e-31
AMG16740.1|2920453_2920816_+	hypothetical protein	NA	U5P4J6	Shigella_phage	100.0	3.3e-60
AMG16741.1|2920881_2921706_+	DUF2303 domain-containing protein	NA	U5P439	Shigella_phage	100.0	6.0e-150
AMG16742.1|2921833_2922370_+	HD family hydrolase	NA	S5MW55	Escherichia_phage	100.0	7.4e-101
AMG16743.1|2922360_2922726_+	hypothetical protein	NA	K7PH61	Enterobacteria_phage	97.4	1.7e-64
AMG16744.1|2922722_2923343_+	DUF551 domain-containing protein	NA	A5LH60	Enterobacteria_phage	91.3	1.7e-112
AVH84704.1|2923342_2923537_+	DNA-binding protein	NA	A5LH59	Enterobacteria_phage	96.9	1.3e-31
AMG16745.1|2923881_2924067_+	hypothetical protein	NA	NA	NA	NA	NA
AMG16746.1|2924077_2925673_+	cytidine deaminase	NA	NA	NA	NA	NA
AMG16747.1|2925825_2927064_-|integrase	site-specific integrase	integrase	A5LH57	Enterobacteria_phage	98.3	1.0e-233
2935942:2935957	attR	TCACCGCTTTCGCCGC	NA	NA	NA	NA
>prophage 18
CP014099	Shigella sonnei strain FDAARGOS_90, complete genome	4878943	2955040	3014644	4878943	transposase,tRNA	Acinetobacter_phage(14.29%)	45	NA	NA
AMG16772.2|2955040_2956196_+|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AMG16773.1|2957137_2958700_+	4-hydroxyphenylacetate 3-monooxygenase, oxygenase component	NA	NA	NA	NA	NA
AMG16774.1|2958717_2959230_+	4-hydroxyphenylacetate 3-monooxygenase reductase component	NA	NA	NA	NA	NA
AMG16775.1|2959308_2959455_+	hypothetical protein	NA	NA	NA	NA	NA
AMG18610.1|2959622_2961773_+	carbon starvation protein A	NA	NA	NA	NA	NA
AMG16776.1|2961822_2962026_+	DUF466 domain-containing protein	NA	NA	NA	NA	NA
AMG16777.1|2962036_2962993_+	GTPase	NA	NA	NA	NA	NA
AMG16779.1|2964194_2965391_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AMG16782.1|2967051_2967882_+	DUF2686 domain-containing protein	NA	NA	NA	NA	NA
AMG16783.1|2968022_2968796_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AMG16784.1|2968794_2968989_+	hypothetical protein	NA	NA	NA	NA	NA
AMG16785.1|2969010_2970471_-	fructuronate reductase	NA	H8ZJP8	Ostreococcus_tauri_virus	32.2	9.5e-50
AMG16786.1|2970551_2971736_-	mannonate dehydratase	NA	NA	NA	NA	NA
AMG16787.1|2971687_2971996_-	hypothetical protein	NA	NA	NA	NA	NA
AMG16790.1|2974148_2975180_-|transposase	IS630 family transposase IS630	transposase	NA	NA	NA	NA
AMG16791.2|2975524_2975674_-	hypothetical protein	NA	NA	NA	NA	NA
AMG16792.2|2976038_2976755_+	N-acetylneuraminic acid outer membrane channel protein NanC	NA	NA	NA	NA	NA
AMG16793.1|2976774_2977881_+	N-acetylneuraminate epimerase	NA	NA	NA	NA	NA
AMG18611.1|2977945_2978926_+	sialate O-acetylesterase	NA	Q08JA2	Stx2-converting_phage	56.6	2.7e-101
AMG16795.1|2979990_2980248_-	biofilm development YmgB/AriR family protein	NA	NA	NA	NA	NA
AMG16797.2|2980763_2982036_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AMG16801.1|2984111_2984633_+	RNA polymerase sigma factor FecI	NA	NA	NA	NA	NA
AMG16802.1|2984629_2985583_+	iron dicitrate transport regulator FecR	NA	NA	NA	NA	NA
AMG16803.1|2985669_2987994_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AMG16804.1|2988038_2988941_+	Fe(3+)-dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA	NA
AMG16805.1|2988937_2989936_+	Fe3+ dicitrate ABC transporter permease	NA	NA	NA	NA	NA
AMG16806.1|2989932_2990889_+	iron-dicitrate transporter subunit FecD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	26.1	1.8e-17
AMG16807.1|2990889_2991657_+	ferric citrate ABC transporter ATP-binding protein FecE	NA	G3M9Y6	Bacillus_virus	24.3	1.4e-12
AVH84708.1|2992172_2993341_-|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	99.7	5.8e-183
AMG16811.2|2993618_2994774_+|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AMG16812.1|2995788_2996808_+	aldehyde reductase Ahr	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	30.4	9.3e-44
AMG16813.1|2996811_2997375_-	gluconate kinase	NA	NA	NA	NA	NA
AMG16814.1|2997591_2998623_+	L-idonate 5-dehydrogenase	NA	NA	NA	NA	NA
AMG16815.1|2998646_2999411_+	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
AMG16816.1|2999475_3000795_+	gluconate permease	NA	NA	NA	NA	NA
AMG16817.1|3000861_3001860_+	transcriptional regulator	NA	NA	NA	NA	NA
AMG16818.1|3001937_3003440_+	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.6	1.8e-83
AMG16819.1|3003558_3004641_-	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
AMG16820.1|3004640_3005741_-	LPS export ABC transporter permease LptF	NA	NA	NA	NA	NA
AMG16821.1|3006007_3007519_+	cytosol aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	38.0	6.0e-47
AMG18612.1|3007652_3008096_+	DNA polymerase III subunit chi	NA	NA	NA	NA	NA
AMG16822.1|3008095_3010951_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	36.7	1.3e-140
AMG16823.1|3011006_3012203_-	DUF898 domain-containing protein	NA	NA	NA	NA	NA
AMG16825.2|3012674_3013475_-	AAA family ATPase	NA	U5N3V8	Enterobacteria_phage	100.0	6.6e-146
AMG16826.1|3013471_3014644_-|transposase	IS21-like element IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	100.0	2.2e-230
>prophage 19
CP014099	Shigella sonnei strain FDAARGOS_90, complete genome	4878943	3091331	3145285	4878943	transposase,tRNA,protease	Vibrio_phage(18.18%)	46	NA	NA
AMG16903.1|3091331_3092336_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
AMG16904.1|3092338_3093598_-|protease	protease modulator HflK	protease	A0A1L2CVV0	Pectobacterium_phage	25.5	3.6e-05
AMG16905.1|3093683_3094964_-	GTPase HflX	NA	NA	NA	NA	NA
AMG16906.1|3095040_3095349_-	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AMG16907.1|3095434_3096385_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AMG16908.1|3096377_3098225_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	41.3	4.4e-60
AMG16909.1|3098234_3099572_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A067ZJB6	Vibrio_phage	31.0	8.8e-18
AMG16910.1|3099590_3100052_-|tRNA	tRNA (N6-adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase TsaE	tRNA	NA	NA	NA	NA
AMG18615.2|3100023_3101571_-	bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AMG16911.1|3101569_3102709_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
AVH84850.1|3102691_3102745_-	hypothetical protein	NA	NA	NA	NA	NA
AMG16912.1|3103608_3104154_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	40.4	2.2e-28
AMG16913.1|3104248_3105301_+	ribosome small subunit-dependent GTPase	NA	NA	NA	NA	NA
AMG16914.1|3105397_3106366_+	phosphatidylserine decarboxylase proenzyme	NA	NA	NA	NA	NA
AMG16915.1|3106387_3109711_+	miniconductance mechanosensitive channel MscM	NA	NA	NA	NA	NA
AMG16916.2|3109861_3111229_-	glutamate/gamma-aminobutyrate family transporter YjeM	NA	NA	NA	NA	NA
AMG16918.1|3111952_3112141_-	transporter	NA	NA	NA	NA	NA
AMG16919.1|3112359_3113337_-	elongation factor P--(R)-beta-lysine ligase	NA	A0A2K9KZX5	Tupanvirus	28.2	6.8e-28
AMG16920.1|3113661_3115470_+	fumarate reductase (quinol) flavoprotein subunit	NA	NA	NA	NA	NA
AMG16921.1|3115462_3116197_+	succinate dehydrogenase/fumarate reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AMG16922.1|3116207_3116603_+	fumarate reductase subunit C	NA	NA	NA	NA	NA
AMG16923.1|3116613_3116973_+	fumarate reductase subunit D	NA	NA	NA	NA	NA
AMG16924.1|3117035_3118169_+	BlaEC family class C beta-lactamase	NA	NA	NA	NA	NA
AMG16925.1|3118257_3118791_+	hypothetical protein	NA	A0A1W6JNX6	Morganella_phage	55.0	2.7e-47
AMG16926.1|3118787_3119105_-	quaternary ammonium compound-resistance protein SugE	NA	NA	NA	NA	NA
AMG16927.1|3119279_3119426_-	entericidin B	NA	NA	NA	NA	NA
AMG16928.1|3119536_3119662_-	entericidin A	NA	NA	NA	NA	NA
AMG16929.1|3119713_3120280_-	elongation factor P	NA	NA	NA	NA	NA
AMG16930.1|3120321_3121350_+	EF-P beta-lysylation protein EpmB	NA	NA	NA	NA	NA
AMG16932.1|3122627_3123386_+	hypothetical protein	NA	NA	NA	NA	NA
AMG16933.1|3123588_3123942_-	DUF4156 domain-containing protein	NA	NA	NA	NA	NA
AMG16934.1|3124079_3125726_-	molecular chaperone GroEL	NA	A0A2I7SAK5	Vibrio_phage	68.9	5.3e-190
AMG16935.1|3125769_3126063_-	co-chaperone GroES	NA	K4F9I2	Cronobacter_phage	45.4	9.2e-13
AMG16936.1|3126338_3127595_+	L-methionine/branched-chain amino acid transporter	NA	NA	NA	NA	NA
AMG16937.1|3127616_3128087_-	membrane protein FxsA	NA	NA	NA	NA	NA
AMG16938.1|3128423_3129860_+	aspartate ammonia-lyase	NA	NA	NA	NA	NA
AMG16939.1|3129977_3131279_+	anaerobic C4-dicarboxylate transporter DcuA	NA	NA	NA	NA	NA
AMG16940.1|3131394_3131733_+	divalent-cation tolerance protein CutA	NA	NA	NA	NA	NA
AMG16941.1|3131708_3133406_+	thiol:disulfide interchange protein DsbD	NA	NA	NA	NA	NA
AMG16942.1|3133442_3134018_+	transcriptional regulator	NA	NA	NA	NA	NA
AMG16943.1|3134311_3134530_-	hypothetical protein	NA	NA	NA	NA	NA
AMG16944.1|3137710_3139039_-|transposase	IS4-like element IS4 family transposase	transposase	NA	NA	NA	NA
AMG16945.2|3139143_3140300_-|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AMG16947.1|3140411_3140759_+	calcium-binding protein	NA	NA	NA	NA	NA
AMG16949.2|3141897_3143170_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AMG16951.2|3144129_3145285_+|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
>prophage 20
CP014099	Shigella sonnei strain FDAARGOS_90, complete genome	4878943	3551647	3609232	4878943	transposase,integrase	Shigella_phage(20.0%)	44	3608020:3608033	3615054:3615067
AMG17293.2|3551647_3552920_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AMG18632.2|3552905_3553244_+	growth inhibitor PemK	NA	NA	NA	NA	NA
AMG17294.1|3553442_3553724_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
AMG17295.1|3553810_3555286_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AMG17296.1|3555435_3556329_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AMG17297.1|3556380_3557925_-	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
AVH84731.1|3557927_3559778_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AMG17298.1|3559842_3560772_-	branched-chain-amino-acid transaminase	NA	NA	NA	NA	NA
AMG17299.1|3560791_3561055_-	acetolactate synthase isozyme 2 small subunit	NA	NA	NA	NA	NA
AMG17300.1|3561051_3562698_-	acetolactate synthase 2 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	31.8	6.3e-66
AVH84855.1|3562700_3562751_-	hypothetical protein	NA	NA	NA	NA	NA
AMG17301.1|3562837_3562936_-	IlvGMEDA operon leader peptide	NA	NA	NA	NA	NA
AVH84854.1|3564936_3565215_+	magnesium chelatase	NA	NA	NA	NA	NA
AMG17303.1|3565301_3566474_+|transposase	IS21-like element IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	100.0	2.2e-230
AMG17304.2|3566470_3567271_+	AAA family ATPase	NA	U5N3V8	Enterobacteria_phage	100.0	6.6e-146
AMG17306.1|3567745_3568084_-	DUF413 domain-containing protein	NA	NA	NA	NA	NA
AMG17307.1|3568202_3569042_+	transcriptional regulator	NA	NA	NA	NA	NA
AMG17308.1|3574842_3575535_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AMG17309.1|3575557_3576985_+	MFS transporter	NA	NA	NA	NA	NA
AMG17310.2|3576950_3577943_-	ribose operon repressor	NA	NA	NA	NA	NA
AMG18633.1|3577946_3578876_-	ribokinase	NA	NA	NA	NA	NA
AMG17311.1|3579912_3580878_-	ribose ABC transporter permease	NA	NA	NA	NA	NA
AMG17312.1|3580882_3582388_-	ribose import ATP-binding protein RbsA	NA	A0A2H4PQG7	Staphylococcus_phage	26.7	3.0e-14
AMG18634.1|3582395_3582815_-	D-ribose pyranase	NA	NA	NA	NA	NA
AMG17313.1|3582981_3584850_-	low affinity potassium transport system protein kup	NA	M1I6H8	Paramecium_bursaria_Chlorella_virus	30.6	6.0e-65
AMG17314.1|3585008_3586337_-|transposase	IS4-like element IS4 family transposase	transposase	NA	NA	NA	NA
AMG17315.2|3586418_3586643_-	xylanase	NA	NA	NA	NA	NA
AMG17316.1|3586642_3588259_-	carbohydrate porin	NA	NA	NA	NA	NA
AVH84732.1|3588344_3589433_-	glycoside hydrolase	NA	NA	NA	NA	NA
AVH84733.1|3590812_3591028_+	hypothetical protein	NA	NA	NA	NA	NA
AMG17319.1|3591275_3593153_-	PTS beta-glucoside transporter subunit IIABC	NA	NA	NA	NA	NA
AMG17320.1|3593286_3594123_-	PRD domain-containing protein	NA	NA	NA	NA	NA
AMG17321.1|3594408_3595134_-	phosphate-specific transport system accessory protein PhoU	NA	NA	NA	NA	NA
AMG17322.1|3595148_3595922_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.6	1.3e-18
AMG17323.1|3596012_3596903_-	phosphate ABC transporter permease PtsA	NA	NA	NA	NA	NA
AMG17324.1|3596902_3597862_-	phosphate ABC transporter permease	NA	NA	NA	NA	NA
AMG17325.1|3597948_3598989_-	phosphate ABC transporter substrate-binding protein PstS	NA	A0A1D7SRJ6	Cyanophage	38.3	4.7e-51
AMG17326.1|3599236_3600310_-	fimbrial protein	NA	NA	NA	NA	NA
AVH84734.1|3601948_3603116_+|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	99.7	5.8e-183
AVH84735.1|3605325_3605628_-	fimbrial protein	NA	NA	NA	NA	NA
AMG17331.1|3605675_3606248_-	fimbrial protein	NA	NA	NA	NA	NA
AMG17332.1|3606539_3607868_-|transposase	IS4-like element IS4 family transposase	transposase	NA	NA	NA	NA
3608020:3608033	attL	TAAGGATTATTTAG	NA	NA	NA	NA
AVH84736.1|3608478_3608718_+	DUF1819 domain-containing protein	NA	NA	NA	NA	NA
AMG17333.1|3608905_3609232_-|integrase	integrase	integrase	A0A1P8DJJ6	Virus_Rctr41k	52.0	2.1e-18
3615054:3615067	attR	CTAAATAATCCTTA	NA	NA	NA	NA
>prophage 21
CP014099	Shigella sonnei strain FDAARGOS_90, complete genome	4878943	3795011	3803403	4878943	transposase	Enterobacteria_phage(50.0%)	8	NA	NA
AMG17490.1|3795011_3796196_+	DUF4102 domain-containing protein	NA	Q7M297	Enterobacteria_phage	69.9	3.4e-162
AMG17491.1|3796607_3797651_+	hypothetical protein	NA	NA	NA	NA	NA
AMG17493.2|3798397_3799198_-	AAA family ATPase	NA	U5N3V8	Enterobacteria_phage	99.6	2.5e-145
AMG17494.1|3799194_3800367_-|transposase	IS21-like element IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	100.0	2.2e-230
AMG17496.1|3800838_3801135_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AMG17497.1|3801268_3801694_-	arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	70.7	1.5e-51
AMG17498.1|3801706_3802996_-	arsenical efflux pump membrane protein ArsB	NA	A0A2H4J144	uncultured_Caudovirales_phage	73.5	4.6e-173
AMG17499.1|3803049_3803403_-	transcriptional regulator	NA	A0A2H4J145	uncultured_Caudovirales_phage	50.9	9.7e-25
>prophage 22
CP014099	Shigella sonnei strain FDAARGOS_90, complete genome	4878943	3921944	3968011	4878943	transposase	Escherichia_phage(36.36%)	40	NA	NA
AMG17605.2|3921944_3923153_+|transposase	transposase	transposase	A0A077SL42	Escherichia_phage	92.8	1.6e-207
AMG17606.1|3923401_3923851_-	hypothetical protein	NA	NA	NA	NA	NA
AMG17607.1|3923959_3924307_+	hypothetical protein	NA	NA	NA	NA	NA
AMG17608.1|3924296_3924659_+	hypothetical protein	NA	NA	NA	NA	NA
AMG17609.1|3924655_3925153_+	radical SAM protein	NA	NA	NA	NA	NA
AMG17610.1|3925160_3926345_-	multidrug transporter EmrD	NA	S4TR35	Salmonella_phage	23.5	6.8e-14
AMG17611.1|3926624_3926714_-	type I toxin-antitoxin system toxin TisB	NA	NA	NA	NA	NA
AVH84756.1|3926710_3926824_-	LexA family transcriptional regulator	NA	NA	NA	NA	NA
AMG17612.1|3926846_3927005_-	hypothetical protein	NA	NA	NA	NA	NA
AMG17613.1|3927001_3927292_-	hypothetical protein	NA	NA	NA	NA	NA
AMG17614.1|3927278_3927377_+	ilvB operon leader peptide IvbL	NA	NA	NA	NA	NA
AMG17615.1|3927482_3929171_+	acetolactate synthase large subunit	NA	E5EQ70	Micromonas_sp._RCC1109_virus	29.4	4.6e-56
AMG17616.1|3929174_3929465_+	acetolactate synthase isozyme 1 small subunit	NA	NA	NA	NA	NA
AMG17617.1|3929539_3930130_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AMG17618.1|3930129_3931632_+	signal transduction histidine-protein kinase/phosphatase UhpB	NA	NA	NA	NA	NA
AMG17619.1|3931641_3932961_+	MFS transporter family glucose-6-phosphate receptor UhpC	NA	NA	NA	NA	NA
AMG17620.1|3933098_3934490_+	hexose phosphate transporter	NA	NA	NA	NA	NA
AMG17621.1|3934534_3936301_-	adenine deaminase	NA	NA	NA	NA	NA
AMG17622.2|3936397_3936586_+	sulfate permease	NA	NA	NA	NA	NA
AMG17624.1|3938262_3938715_+	DUF1198 domain-containing protein	NA	NA	NA	NA	NA
AVH84757.1|3938735_3938927_-	hypothetical protein	NA	NA	NA	NA	NA
AMG17625.1|3940146_3940440_-	hypothetical protein	NA	NA	NA	NA	NA
AVH84858.1|3940476_3940665_+	hypothetical protein	NA	NA	NA	NA	NA
AMG17627.1|3940661_3941429_+	lipoprotein NlpA	NA	NA	NA	NA	NA
AVH84758.1|3942191_3942398_-|transposase	IS3 family transposase	transposase	H6WZH1	Escherichia_phage	91.2	9.3e-28
AVH84759.1|3942413_3942812_-	hypothetical protein	NA	A0A0N7C1X7	Escherichia_phage	97.6	9.1e-64
AMG17630.1|3942897_3943173_-	hypothetical protein	NA	A0A0N7C1Z2	Escherichia_phage	94.5	3.6e-43
AVH84859.1|3943583_3944033_+|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	59.7	1.0e-47
AVH84760.1|3944303_3945471_+|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	99.7	5.8e-183
AVH84761.1|3945789_3946080_-	hypothetical protein	NA	NA	NA	NA	NA
AMG17634.1|3947600_3947798_+	hypothetical protein	NA	NA	NA	NA	NA
AMG17635.2|3947783_3950063_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AMG17636.1|3949984_3951322_-	lysine 6-monooxygenase	NA	NA	NA	NA	NA
AMG17637.1|3951318_3953061_-	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA	NA
AMG17638.1|3953060_3954008_-	N-acetyltransferase	NA	NA	NA	NA	NA
AMG17639.2|3954008_3955796_-	aerobactin synthase IucA	NA	NA	NA	NA	NA
AMG17640.1|3955868_3957062_+	MFS transporter	NA	NA	NA	NA	NA
AMG17642.2|3959453_3960610_-|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	3.0e-67
AMG17651.2|3964991_3965792_+	AAA family ATPase	NA	U5N3V8	Enterobacteria_phage	100.0	6.6e-146
AMG17653.2|3966855_3968011_+|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
>prophage 23
CP014099	Shigella sonnei strain FDAARGOS_90, complete genome	4878943	4321448	4384785	4878943	transposase,tRNA	Enterobacteria_phage(18.18%)	52	NA	NA
AMG17983.1|4321448_4322468_+|transposase	IS110 family transposase ISEc11	transposase	NA	NA	NA	NA
AVH84785.1|4323143_4323407_-	hypothetical protein	NA	NA	NA	NA	NA
AMG17985.1|4323495_4327011_+	DNA helicase	NA	NA	NA	NA	NA
AMG18664.2|4328083_4329121_+	conjugal transfer protein TraF	NA	NA	NA	NA	NA
AVH84786.1|4329110_4329317_-	hypothetical protein	NA	NA	NA	NA	NA
AMG17988.1|4329481_4333339_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	Q9LA58	Enterobacterial_phage	38.4	3.5e-224
AMG17989.1|4333385_4333967_+	hypothetical protein	NA	NA	NA	NA	NA
AMG17991.1|4334949_4336308_-	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AMG17992.1|4336353_4337112_-	hypothetical protein	NA	NA	NA	NA	NA
AMG18665.2|4337143_4337857_-	thymidylate kinase	NA	NA	NA	NA	NA
AMG17993.1|4338030_4338270_+	hypothetical protein	NA	NA	NA	NA	NA
AMG17994.1|4338285_4339317_-|transposase	IS630 family transposase IS630	transposase	NA	NA	NA	NA
AMG17996.1|4340067_4340517_-	evolved beta-galactosidase subunit beta	NA	NA	NA	NA	NA
AMG17998.1|4343839_4345168_+|transposase	IS4-like element IS4 family transposase	transposase	NA	NA	NA	NA
AMG17999.1|4345227_4346211_-	transcriptional regulator EbgR	NA	NA	NA	NA	NA
AVH84787.1|4346140_4346323_-	hypothetical protein	NA	NA	NA	NA	NA
AMG18000.1|4346429_4346762_+|tRNA	tRNA-binding protein	tRNA	NA	NA	NA	NA
AMG18666.1|4346803_4348183_-	putrescine aminotransferase	NA	A0A1V0SKB7	Klosneuvirus	28.4	2.9e-32
AVH84865.1|4348118_4348325_-	hypothetical protein	NA	NA	NA	NA	NA
AMG18001.1|4348600_4350121_+	hypothetical protein	NA	A0A1B0V854	Salmonella_phage	52.2	1.4e-35
AMG18002.1|4350227_4350851_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AMG18003.2|4351138_4351903_+	siderophore-interacting protein	NA	NA	NA	NA	NA
AMG18004.1|4352156_4352663_+	mismatch-specific DNA-glycosylase	NA	NA	NA	NA	NA
AVH84788.1|4352767_4352983_+	hypothetical protein	NA	NA	NA	NA	NA
AMG18005.2|4352942_4353743_-	AAA family ATPase	NA	U5N3V8	Enterobacteria_phage	100.0	6.6e-146
AMG18006.1|4353739_4354912_-|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	99.7	8.3e-230
AMG18008.1|4356314_4358156_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.7	8.3e-35
AVH84789.1|4358214_4358337_-	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AMG18009.1|4358350_4360096_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	38.4	1.1e-76
AMG18010.1|4360206_4360422_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
AMG18011.1|4360658_4361672_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	59.2	4.8e-109
AMG18012.1|4361714_4363178_-	L-tartrate/succinate antiporter	NA	NA	NA	NA	NA
AMG18013.1|4363226_4363832_-	L(+)-tartrate dehydratase subunit beta	NA	NA	NA	NA	NA
AMG18667.2|4363828_4364740_-	L+-tartrate dehydratase subunit alpha	NA	NA	NA	NA	NA
AMG18016.1|4365891_4366509_-	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AMG18017.1|4366613_4366982_+	bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase	NA	NA	NA	NA	NA
AMG18018.1|4367072_4367894_+	undecaprenyl-diphosphatase	NA	NA	NA	NA	NA
AMG18019.1|4368056_4369295_-|tRNA	multifunctional CCA tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	51.0	6.5e-92
AMG18020.1|4369358_4369979_-	SH3 domain-containing protein	NA	NA	NA	NA	NA
AMG18668.1|4370018_4370204_+	hypothetical protein	NA	NA	NA	NA	NA
AMG18021.1|4370220_4371522_+	inorganic triphosphatase	NA	NA	NA	NA	NA
AMG18022.1|4371544_4374385_+	glutamine-synthetase adenylyltransferase	NA	NA	NA	NA	NA
AMG18023.1|4374432_4375866_+	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	29.4	3.0e-40
AMG18024.1|4375932_4376325_-	hypothetical protein	NA	NA	NA	NA	NA
AVH84866.1|4376361_4376421_-	small toxic protein IbsD	NA	NA	NA	NA	NA
AMG18026.1|4376659_4378321_-	flotillin family protein	NA	NA	NA	NA	NA
AMG18027.1|4378347_4378977_-	DUF1449 domain-containing protein	NA	NA	NA	NA	NA
AMG18028.1|4379245_4379446_+	glycogen synthase	NA	NA	NA	NA	NA
AMG18029.1|4379592_4380624_+|transposase	IS630-like element IS630 family transposase	transposase	NA	NA	NA	NA
AMG18030.1|4380643_4381708_-	hypothetical protein	NA	NA	NA	NA	NA
AMG18031.1|4381709_4382459_-	molecular chaperone	NA	NA	NA	NA	NA
AMG18033.2|4383512_4384785_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
>prophage 24
CP014099	Shigella sonnei strain FDAARGOS_90, complete genome	4878943	4513331	4584230	4878943	transposase,tRNA	Acinetobacter_phage(18.18%)	58	NA	NA
AMG18155.1|4513331_4514312_-|tRNA	tRNA-modifying protein YgfZ	tRNA	NA	NA	NA	NA
AMG18156.1|4514554_4514821_+	antitoxin CptB	NA	NA	NA	NA	NA
AMG18157.1|4514801_4515209_+	toxin CptA	NA	NA	NA	NA	NA
AMG18158.1|4515248_4515770_-	flavodoxin-2	NA	NA	NA	NA	NA
AMG18159.1|4515881_4516778_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	28.6	6.7e-30
AMG18160.1|4516802_4517513_+	bifunctional protein-disulfide isomerase/oxidoreductase DsbC	NA	NA	NA	NA	NA
AMG18161.1|4517518_4519252_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.5	7.1e-60
AMG18162.2|4519342_4520440_+	peptide chain release factor 2	NA	A0A0S4KWG0	Pseudomonas_phage	39.0	1.8e-05
AMG18163.1|4520450_4521968_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.7	5.9e-87
AMG18164.1|4522010_4522559_-	isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA	NA
AMG18165.1|4522681_4522807_-	hypothetical protein	NA	NA	NA	NA	NA
AMG18166.1|4522808_4524257_-	purine permease	NA	Q9KX94	Enterobacteria_phage	26.8	2.1e-25
AVH84795.1|4524303_4524420_-	purine permease YgfU	NA	NA	NA	NA	NA
AVH84796.1|4524510_4524765_-	hypothetical protein	NA	NA	NA	NA	NA
AMG18167.1|4524777_4525809_+|transposase	IS630 family transposase IS630	transposase	NA	NA	NA	NA
AMG18168.1|4525847_4527767_+	oxidoreductase (Fe-S)-binding subunit	NA	NA	NA	NA	NA
AMG18169.1|4527766_4528255_+	oxidoreductase	NA	NA	NA	NA	NA
AMG18171.2|4528709_4529060_-	guanine deaminase	NA	NA	NA	NA	NA
AMG18172.1|4528956_4531896_-	molybdopterin-dependent oxidoreductase Mo/Fe-S-binding subunit	NA	NA	NA	NA	NA
AMG18173.1|4531892_4532672_-	molybdopterin-dependent oxidoreductase FAD-binding subunit	NA	NA	NA	NA	NA
AMG18174.1|4532722_4534051_-	putative aminohydrolase SsnA	NA	NA	NA	NA	NA
AMG18176.2|4535465_4536621_+|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AMG18177.1|4536726_4538055_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
AMG18178.1|4540178_4540757_-	molybdenum cofactor cytidylyltransferase	NA	NA	NA	NA	NA
AMG18179.1|4540859_4541630_+	putative selenium-dependent hydroxylase accessory protein YqeC	NA	NA	NA	NA	NA
AMG18180.1|4541677_4543303_+	hypothetical protein	NA	NA	NA	NA	NA
AMG18181.1|4543343_4544276_-	carbamate kinase-like protein YqeA	NA	NA	NA	NA	NA
AMG18182.1|4545760_4546972_-	YgeY family selenium metabolism-linked hydrolase	NA	NA	NA	NA	NA
AMG18183.1|4547029_4548226_-	diaminopropionate ammonia-lyase	NA	NA	NA	NA	NA
AMG18674.2|4548283_4549474_-	knotted carbamoyltransferase YgeW	NA	NA	NA	NA	NA
AMG18184.1|4549949_4551728_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AMG18185.1|4551767_4552247_-	xanthine dehydrogenase iron-sulfur-binding subunit	NA	NA	NA	NA	NA
AMG18186.1|4552243_4553122_-	xanthine dehydrogenase FAD-binding subunit XdhB	NA	NA	NA	NA	NA
AMG18187.1|4553132_4555430_-	xanthine dehydrogenase molybdenum-binding subunit XdhA	NA	NA	NA	NA	NA
AVH84797.1|4555656_4555848_+	formate dehydrogenase	NA	NA	NA	NA	NA
AMG18188.1|4555844_4556600_+	lipoprotein	NA	I2E8W3	Clostridium_phage	36.8	1.1e-12
AVH84798.1|4558231_4559505_-|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.0	5.2e-177
AMG18190.1|4560341_4560833_-	CesD/SycD/LcrH family type III secretion system chaperone	NA	NA	NA	NA	NA
AMG18192.1|4561601_4561838_+	hypothetical protein	NA	NA	NA	NA	NA
AMG18193.1|4561788_4561938_+	hypothetical protein	NA	NA	NA	NA	NA
AVH84799.1|4562437_4562518_+	hypothetical protein	NA	NA	NA	NA	NA
AMG18194.1|4562551_4563034_-	hypothetical protein	NA	NA	NA	NA	NA
AMG18195.1|4563026_4563362_-	transcriptional regulator	NA	NA	NA	NA	NA
AVH84800.1|4564732_4564942_+	hypothetical protein	NA	NA	NA	NA	NA
AMG18676.1|4564945_4565578_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AMG18196.1|4566037_4567267_-	transporter	NA	NA	NA	NA	NA
AMG18197.1|4567521_4568703_+	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA	NA
AMG18198.1|4568989_4569826_+	5-keto-4-deoxyuronate isomerase	NA	NA	NA	NA	NA
AMG18199.1|4569890_4570652_+	2-deoxy-D-gluconate 3-dehydrogenase	NA	Q06VL0	Trichoplusia_ni_ascovirus	32.1	1.2e-19
AMG18200.1|4570966_4572385_+	arabinose-proton symporter	NA	O13311	Aichi_virus	26.9	1.8e-24
AMG18201.1|4573149_4574085_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AMG18202.1|4574206_4575469_+	diaminopimelate decarboxylase	NA	NA	NA	NA	NA
AMG18203.1|4575475_4576507_-	transcriptional regulator	NA	NA	NA	NA	NA
AMG18204.1|4577092_4579252_+	bifunctional 2-acylglycerophosphoethanolamine acyltransferase/acyl-ACP synthetase	NA	NA	NA	NA	NA
AMG18205.1|4579244_4580438_+	MFS transporter	NA	NA	NA	NA	NA
AMG18206.1|4580469_4581510_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AMG18207.1|4581620_4582949_-|transposase	IS4-like element IS4 family transposase	transposase	NA	NA	NA	NA
AMG18209.2|4583074_4584230_+|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
>prophage 25
CP014099	Shigella sonnei strain FDAARGOS_90, complete genome	4878943	4691495	4699436	4878943		uncultured_Mediterranean_phage(33.33%)	8	NA	NA
AMG18304.1|4691495_4692257_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	48.0	3.4e-59
AMG18305.1|4692250_4692877_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	49.1	2.2e-35
AMG18306.1|4693016_4694156_+	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	35.6	1.7e-06
AMG18307.1|4694218_4695211_+	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	37.6	6.1e-32
AMG18308.1|4695304_4696669_-	GntP family transporter	NA	NA	NA	NA	NA
AMG18309.1|4696757_4697534_-	hypothetical protein	NA	NA	NA	NA	NA
AMG18310.1|4697538_4698177_-	aldolase	NA	A0A077SK32	Escherichia_phage	75.0	1.4e-82
AMG18311.1|4698173_4699436_-	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	61.2	1.4e-134
>prophage 26
CP014099	Shigella sonnei strain FDAARGOS_90, complete genome	4878943	4742313	4842930	4878943	plate,holin,terminase,head,lysis,transposase,tRNA,portal,protease,tail	Enterobacteria_phage(53.19%)	103	NA	NA
AMG18349.1|4742313_4744944_+|tRNA	alanine--tRNA ligase	tRNA	A0A2K9L1X7	Tupanvirus	38.6	5.5e-80
AMG18350.1|4745178_4745364_+	carbon storage regulator	NA	A0A2I7RT00	Vibrio_phage	66.7	4.9e-12
AMG18351.1|4746687_4747254_+	fructose-1-phosphate/6-phosphogluconate phosphatase	NA	NA	NA	NA	NA
AMG18352.1|4747250_4747679_+	DedA family protein	NA	NA	NA	NA	NA
AMG18353.1|4747751_4749308_+	glutamate--cysteine ligase	NA	NA	NA	NA	NA
AMG18354.1|4749457_4749973_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
AMG18355.1|4750036_4751575_-	multidrug efflux MFS transporter subunit EmrB	NA	NA	NA	NA	NA
AMG18356.1|4751591_4752764_-	multidrug export protein EmrA	NA	NA	NA	NA	NA
AMG18357.1|4752890_4753421_-	transcriptional regulator	NA	NA	NA	NA	NA
AMG18358.1|4753511_4753847_-	L-valine transporter subunit YgaH	NA	NA	NA	NA	NA
AMG18359.1|4753836_4754574_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AMG18360.1|4754697_4755882_-	MFS transporter	NA	NA	NA	NA	NA
AMG18361.1|4756172_4757165_-	proline/glycine betaine ABC transporter substrate-binding protein ProX	NA	NA	NA	NA	NA
AMG18362.1|4757222_4758287_-	proline/glycine betaine ABC transporter permease ProW	NA	NA	NA	NA	NA
AMG18363.1|4758279_4759482_-	proline/glycine betaine ABC transporter ATP-binding protein ProV	NA	G3M9Y6	Bacillus_virus	39.4	4.9e-28
AVH84804.1|4759471_4759720_-	hypothetical protein	NA	NA	NA	NA	NA
AMG18364.1|4759837_4760797_-	ribonucleoside-diphosphate reductase 2 subunit beta	NA	R4TBI6	Mycobacterium_phage	71.8	3.5e-133
AMG18365.1|4760806_4762951_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	48.1	2.4e-195
AMG18366.1|4763330_4763576_-	NrdH-redoxin	NA	Q5K5J3	Oenococcus_phage	35.3	1.8e-06
AMG18367.1|4763823_4764153_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AMG18368.1|4764304_4764649_+	hypothetical protein	NA	NA	NA	NA	NA
AMG18369.1|4764685_4765135_-	L-alanine exporter AlaE	NA	NA	NA	NA	NA
AMG18370.1|4765543_4766740_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AMG18371.1|4767254_4767659_+	DNA-binding protein StpA	NA	NA	NA	NA	NA
AVH84805.1|4767705_4768230_-	rhodanese-like domain-containing protein YgaP	NA	NA	NA	NA	NA
AMG18372.1|4768239_4768539_-	transcriptional regulator	NA	NA	NA	NA	NA
AMG18373.1|4768721_4768880_+	YqaE/Pmp3 family membrane protein	NA	NA	NA	NA	NA
AMG18374.1|4768963_4769413_+	peptidoglycan-binding protein LysM	NA	A0A090DBR9	Clostridium_phage	39.5	2.0e-06
AMG18375.1|4769413_4770076_-	transcriptional regulator	NA	NA	NA	NA	NA
AMG18376.1|4770096_4771413_-	GABA permease	NA	NA	NA	NA	NA
AMG18377.1|4771723_4773004_-	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	30.1	3.2e-33
AMG18378.1|4773017_4774466_-	NADP-dependent succinate-semialdehyde dehydrogenase I	NA	NA	NA	NA	NA
AMG18379.1|4774488_4775757_-	L-2-hydroxyglutarate oxidase	NA	NA	NA	NA	NA
AMG18380.1|4775776_4776754_-	protein CsiD	NA	NA	NA	NA	NA
AVH84806.1|4779684_4779960_+|transposase	IS1 family transposase	transposase	Q71TE9	Escherichia_phage	98.9	2.0e-46
AMG18382.1|4779878_4780382_+|transposase	IS1 family transposase	transposase	U5P0U6	Shigella_phage	98.8	1.1e-93
AMG18384.1|4782048_4783527_+	hypothetical protein	NA	NA	NA	NA	NA
AMG18385.2|4783910_4784099_+	DNA invertase	NA	A0A1S6L009	Salmonella_phage	69.2	1.6e-05
AVH84870.1|4784437_4785817_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AVH84807.1|4785892_4787120_+|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	96.3	6.3e-172
AMG18387.1|4787236_4788628_+	replicative DNA helicase	NA	Q8W640	Enterobacteria_phage	96.8	7.0e-260
AMG18684.1|4788639_4788882_+	hypothetical protein	NA	Q8W639	Enterobacteria_phage	95.0	3.9e-33
AMG18388.1|4788881_4789253_+	RusA family crossover junction endodeoxyribonuclease	NA	V5URS4	Shigella_phage	64.0	8.0e-38
AMG18389.1|4789242_4789629_+	antitermination protein	NA	Q777W5	Enterobacteria_phage	83.9	1.1e-58
AVH84808.1|4789633_4789858_+	hypothetical protein	NA	NA	NA	NA	NA
AMG18390.1|4790109_4790673_+	hypothetical protein	NA	Q8HA19	Enterobacteria_phage	56.9	2.6e-40
AMG18391.1|4791853_4792069_+|holin	holin	holin	M1FN85	Enterobacteria_phage	91.5	4.2e-31
AMG18392.1|4792068_4792566_+	lysozyme	NA	A5LH83	Enterobacteria_phage	98.2	2.4e-90
AMG18393.1|4792562_4793027_+|lysis	lysis protein	lysis	A0A0K2FJD0	Enterobacteria_phage	90.8	1.2e-67
AMG18394.1|4793069_4793420_+	HNH endonuclease	NA	Q8W633	Enterobacteria_phage	99.1	4.7e-64
AMG18395.2|4793532_4794036_+|terminase	phage terminase small subunit P27 family	terminase	A0A1B3B2F4	Salmonella_phage	99.4	6.7e-88
AMG18396.1|4794032_4795766_+|terminase	terminase large subunit	terminase	U5P0Q5	Shigella_phage	99.5	0.0e+00
AMG18397.1|4795777_4795960_+	hypothetical protein	NA	Q8W630	Enterobacteria_phage	98.3	2.9e-25
AMG18398.1|4796084_4797116_+|portal	phage portal protein	portal	Q8W629	Enterobacteria_phage	97.6	1.1e-193
AVH84809.1|4798232_4799506_-|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AMG18401.1|4799906_4800248_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
AMG18402.1|4800396_4802058_-	DNA repair protein RecN	NA	NA	NA	NA	NA
AMG18403.1|4802143_4803022_-	NAD(+) kinase	NA	NA	NA	NA	NA
AMG18686.2|4802953_4803148_+	molecular chaperone GrpE	NA	NA	NA	NA	NA
AMG18404.1|4803144_4803738_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
AMG18687.1|4803792_4805034_-	DUF21 domain-containing protein	NA	NA	NA	NA	NA
AMG18688.1|4805099_4805891_-	inner membrane protein YpjD	NA	NA	NA	NA	NA
AMG18405.1|4806057_4807419_+	signal recognition particle protein	NA	NA	NA	NA	NA
AMG18406.1|4807667_4807916_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AMG18407.1|4807934_4808483_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AMG18408.1|4808513_4809281_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AMG18409.1|4809322_4809670_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
AMG18410.1|4809746_4810229_-	hypothetical protein	NA	NA	NA	NA	NA
AMG18412.2|4811355_4812156_-	AAA family ATPase	NA	U5N3V8	Enterobacteria_phage	100.0	6.6e-146
AMG18413.1|4812152_4813325_-|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	99.7	2.8e-230
AMG18414.1|4813398_4813539_-	diguanylate cyclase	NA	NA	NA	NA	NA
AVH84810.1|4813605_4813809_+	hypothetical protein	NA	NA	NA	NA	NA
AMG18416.2|4813860_4815016_+|transposase	IS3-like element IS600 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	1.2e-66
AMG18417.1|4815116_4815635_-	DUF4154 domain-containing protein	NA	NA	NA	NA	NA
AMG18419.1|4816549_4816927_-	DUF2799 domain-containing protein	NA	NA	NA	NA	NA
AMG18420.1|4817135_4818206_+	3-deoxy-7-phosphoheptulonate synthase	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.2	4.0e-90
AMG18421.1|4818216_4819338_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
AMG18422.1|4819380_4820541_-	P-protein	NA	NA	NA	NA	NA
AVH84871.1|4820640_4820688_-	hypothetical protein	NA	NA	NA	NA	NA
AMG18423.1|4820791_4821133_-	ribosome-associated inhibitor A	NA	NA	NA	NA	NA
AMG18424.1|4821167_4821374_-	hypothetical protein	NA	NA	NA	NA	NA
AMG18425.1|4821393_4822722_-|transposase	IS4-like element IS4 family transposase	transposase	NA	NA	NA	NA
AMG18426.1|4822833_4823124_-	RnfH family protein	NA	NA	NA	NA	NA
AMG18427.1|4823113_4823590_-	ubiquinone-binding protein	NA	NA	NA	NA	NA
AMG18428.1|4823721_4824204_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	46.8	4.0e-29
AMG18429.1|4824979_4825603_-	DUF4376 domain-containing protein	NA	A0A0U2QQK4	Escherichia_phage	77.4	1.3e-80
AMG18430.2|4825553_4826822_-|tail	phage tail protein	tail	Q8W611	Enterobacteria_phage	43.7	3.2e-78
AMG18689.2|4826845_4827334_-|tail	tail fiber assembly protein	tail	Q8W612	Enterobacteria_phage	77.9	6.0e-65
AMG18431.1|4827393_4828434_-|tail	phage tail protein	tail	Q8W613	Enterobacteria_phage	83.5	1.5e-158
AMG18432.1|4828420_4829011_-	DUF2313 domain-containing protein	NA	Q8W614	Enterobacteria_phage	98.0	1.4e-113
AMG18433.1|4829010_4829514_-|tail	phage tail protein	tail	Q8W615	Enterobacteria_phage	95.8	3.7e-86
AMG18436.1|4830862_4831273_-	hypothetical protein	NA	Q8W616	Enterobacteria_phage	95.6	3.0e-70
AMG18437.1|4831278_4831812_-|plate	phage baseplate assembly protein V	plate	Q8W617	Enterobacteria_phage	96.0	3.7e-92
AMG18438.1|4831789_4832872_-|plate	baseplate protein	plate	Q8W618	Enterobacteria_phage	98.8	8.0e-195
AMG18439.1|4832868_4834260_-	DNA circularization protein	NA	Q8W619	Enterobacteria_phage	95.7	1.4e-247
AMG18690.1|4834306_4834513_-	hypothetical protein	NA	NA	NA	NA	NA
AMG18441.1|4835633_4837583_-|tail	phage tail tape measure protein	tail	Q8W620	Enterobacteria_phage	97.8	0.0e+00
AMG18691.1|4837667_4837997_-|tail	phage tail assembly protein	tail	Q8W621	Enterobacteria_phage	98.2	8.7e-52
AMG18442.1|4838002_4838359_-|tail	phage tail protein	tail	Q8W622	Enterobacteria_phage	98.3	5.3e-63
AMG18443.1|4838358_4839855_-|tail	phage tail protein	tail	Q8W623	Enterobacteria_phage	97.2	6.5e-272
AMG18444.2|4839917_4841074_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	1.2e-66
AVH84811.1|4841135_4841498_-|head,protease	HK97 family phage prohead protease	head,protease	U5P4H2	Shigella_phage	100.0	1.1e-63
AMG18446.1|4841601_4842930_-|transposase	IS4-like element IS4 family transposase	transposase	NA	NA	NA	NA
