assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_001448785.2_ASM144878v2	CP030175	Salmonella enterica subsp. enterica serovar Milwaukee str. SA19950795 chromosome, complete genome	1	943449-944942	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	1	1	944576-944608	CP030175.1_3036056-3036024	I-E:I-E:I-E	23,24,24	24	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	NA,NA|57aa|down_2|CP030175.1_946215_946386_+,NA|81aa|down_6|CP030175.1_950920_951163_-	NA|179aa|up_9|CP030175.1_931995_932532_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_8|CP030175.1_932528_932999_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_7|CP030175.1_933013_933520_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|CP030175.1_933539_934313_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|900aa|up_5|CP030175.1_934325_937025_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|CP030175.1_937104_937692_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|CP030175.1_938298_939099_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|CP030175.1_939326_940964_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|CP030175.1_941046_942345_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|CP030175.1_942480_943152_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|CP030175.1_945039_945837_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|CP030175.1_945924_946287_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|57aa|down_2|CP030175.1_946215_946386_+	NA	NA|600aa|down_3|CP030175.1_946710_948510_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_4|CP030175.1_948509_950222_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_5|CP030175.1_950297_951032_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|81aa|down_6|CP030175.1_950920_951163_-	NA	NA|318aa|down_7|CP030175.1_951244_952198_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|down_8|CP030175.1_952578_955278_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|down_9|CP030175.1_955874_957410_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1
GCA_001448785.2_ASM144878v2	CP030175	Salmonella enterica subsp. enterica serovar Milwaukee str. SA19950795 chromosome, complete genome	2	961847-962241	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	5,6,6	6	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	NA|81aa|up_9|CP030175.1_950920_951163_-,NA	NA|81aa|up_9|CP030175.1_950920_951163_-	NA	NA|318aa|up_8|CP030175.1_951244_952198_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|up_7|CP030175.1_952578_955278_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|up_6|CP030175.1_955874_957410_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|up_5|CP030175.1_957426_958029_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|355aa|up_4|CP030175.1_958045_959110_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|CP030175.1_959119_959845_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|up_2|CP030175.1_959844_960549_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|CP030175.1_960548_961466_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP030175.1_961468_961762_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|CP030175.1_962255_963302_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP030175.1_963552_964461_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|CP030175.1_964470_965910_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP030175.1_965896_966502_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|CP030175.1_966519_966876_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP030175.1_967066_967378_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP030175.1_967396_968107_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP030175.1_968106_968586_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP030175.1_968582_969632_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP030175.1_969612_970374_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
