The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP030175	Salmonella enterica subsp. enterica serovar Milwaukee str. SA19950795 chromosome, complete genome	4822474	1659755	1668926	4822474	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
AXD04083.1|1659755_1660703_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
AXD04084.1|1660686_1661418_+	ABC transporter permease	NA	NA	NA	NA	NA
AXD04085.1|1661398_1661506_-	hypothetical protein	NA	NA	NA	NA	NA
AXD04086.1|1661565_1662297_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
AXD04087.1|1662519_1664205_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
AXD04088.1|1664201_1664921_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AXD04089.1|1664967_1665435_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
AXD04090.1|1665491_1666022_-	DUF1307 domain-containing protein	NA	NA	NA	NA	NA
AXD04091.1|1666193_1666652_-	DUF1307 domain-containing protein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
AXD04092.1|1666892_1668926_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 2
CP030175	Salmonella enterica subsp. enterica serovar Milwaukee str. SA19950795 chromosome, complete genome	4822474	1751903	1760767	4822474		Bacillus_phage(33.33%)	8	NA	NA
AXD04156.1|1751903_1752797_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
AXD04157.1|1753128_1754148_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	47.1	2.4e-84
AXD04158.1|1754184_1755309_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AXD04159.1|1755356_1756475_+	GDP-mannose 4,6-dehydratase	NA	M1HXY1	Acanthocystis_turfacea_Chlorella_virus	65.3	5.3e-133
AXD07087.1|1756477_1757443_+	GDP-L-fucose synthase	NA	D1LW79	Prochlorococcus_phage	50.2	7.9e-85
AXD04160.1|1757445_1757946_+	GDP-mannose mannosyl hydrolase	NA	NA	NA	NA	NA
AXD04161.1|1757938_1759387_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	32.2	2.7e-57
AXD04162.1|1759390_1760767_+	phosphomannomutase CpsG	NA	A0A127AWJ1	Bacillus_phage	27.4	7.6e-33
>prophage 3
CP030175	Salmonella enterica subsp. enterica serovar Milwaukee str. SA19950795 chromosome, complete genome	4822474	1946790	1955100	4822474		Escherichia_phage(42.86%)	9	NA	NA
AXD04347.1|1946790_1948041_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.6	1.1e-19
AXD04348.1|1948499_1949624_+	DUF3626 domain-containing protein	NA	NA	NA	NA	NA
AXD04349.1|1949783_1949978_+	hypothetical protein	NA	NA	NA	NA	NA
AXD04350.1|1950680_1951094_+	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	38.6	1.4e-19
AXD04351.1|1951110_1951839_+	pertussis toxin-like subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	53.3	1.4e-62
AXD04352.1|1952030_1952573_+	hypothetical protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
AXD04353.1|1952721_1953099_-	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
AXD04354.1|1953171_1953981_-	cytolethal distending toxin subunit B family protein	NA	A5LH53	Enterobacteria_phage	50.0	1.2e-62
AXD04355.1|1954860_1955100_-	virulence protein MsgA	NA	K7P6H1	Enterobacteria_phage	88.6	8.5e-33
>prophage 4
CP030175	Salmonella enterica subsp. enterica serovar Milwaukee str. SA19950795 chromosome, complete genome	4822474	2210189	2302084	4822474	protease,terminase,holin,tail,portal,plate,tRNA	Escherichia_phage(26.92%)	113	NA	NA
AXD04619.1|2210189_2212628_-	dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	49.7	1.2e-219
AXD04620.1|2212784_2213093_-	DUF1161 domain-containing protein	NA	NA	NA	NA	NA
AXD04621.1|2213196_2213907_+	YnfC family lipoprotein	NA	NA	NA	NA	NA
AXD04622.1|2213947_2214508_-	spermidine N1-acetyltransferase	NA	NA	NA	NA	NA
AXD04623.1|2214543_2214885_-	DUF1283 family protein	NA	NA	NA	NA	NA
AXD04624.1|2215037_2215364_+	YnfA family protein	NA	A0A218MNG8	uncultured_virus	52.9	2.2e-23
AXD04625.1|2215485_2216700_+	D-galactonate dehydratase family member RspA	NA	Q6A202	Oenococcus_phage	28.7	2.0e-45
AXD04626.1|2216710_2217730_+	Zn-dependent oxidoreductase	NA	NA	NA	NA	NA
AXD04627.1|2217783_2217891_+	transporter	NA	NA	NA	NA	NA
AXD04628.1|2217919_2219194_-	DUF3596 domain-containing protein	NA	B6DZ48	Enterobacteria_phage	61.6	4.7e-154
AXD07107.1|2219228_2219480_-	DNA-binding protein	NA	S4TND0	Salmonella_phage	50.0	2.2e-15
AXD04629.1|2219552_2221727_-	exonuclease	NA	S4TNL0	Salmonella_phage	53.0	5.7e-107
AXD04630.1|2221748_2222063_-	hypothetical protein	NA	NA	NA	NA	NA
AXD04631.1|2222147_2222369_-	cell division protein FtsZ	NA	A0A0U2RTC4	Escherichia_phage	83.6	7.9e-33
AXD04632.1|2222869_2223070_+	hypothetical protein	NA	NA	NA	NA	NA
AXD04633.1|2223038_2223404_-	hypothetical protein	NA	NA	NA	NA	NA
AXD04634.1|2223415_2223544_-	hypothetical protein	NA	NA	NA	NA	NA
AXD07108.1|2223733_2224102_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AXD04635.1|2224270_2224552_+	hypothetical protein	NA	H6WRX5	Salmonella_phage	45.6	1.8e-10
AXD04636.1|2225075_2225909_+	helix-turn-helix domain-containing protein	NA	Q8W642	Enterobacteria_phage	62.2	1.8e-32
AXD04637.1|2226163_2226559_+	DUF977 family protein	NA	A0A0U2QQN3	Escherichia_phage	43.0	1.2e-18
AXD04638.1|2226555_2226846_+	DUF4406 domain-containing protein	NA	A0A0U2SAZ1	Escherichia_phage	83.9	4.8e-38
AXD04639.1|2226842_2227124_+	DUF4752 family protein	NA	A0A2I6TCB0	Escherichia_phage	86.7	1.4e-37
AXD04640.1|2227116_2227371_+	hypothetical protein	NA	A0A0U2RK51	Escherichia_phage	85.7	1.4e-38
AXD04641.1|2227363_2227678_+	hypothetical protein	NA	A0A222YY67	Escherichia_phage	85.4	4.8e-52
AXD04642.1|2227674_2228109_+	ead/Ea22-like family protein	NA	Q8HAA6	Salmonella_phage	83.7	2.0e-40
AXD04643.1|2228113_2228302_+	hypothetical protein	NA	NA	NA	NA	NA
AXD04644.1|2228441_2229014_+	DUF551 domain-containing protein	NA	Q9KXA0	Enterobacteria_phage	57.2	8.6e-39
AXD04645.1|2229013_2229409_+	hypothetical protein	NA	A0A193GYM6	Enterobacter_phage	60.8	8.6e-38
AXD04646.1|2229643_2229856_+	Hok/Gef family protein	NA	A0A0P0ZAX5	Stx2-converting_phage	94.3	1.2e-27
AXD04647.1|2230442_2230721_+	hypothetical protein	NA	NA	NA	NA	NA
AXD04648.1|2230722_2231766_+	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	57.5	5.1e-114
AXD04649.1|2231777_2232152_+	RusA family crossover junction endodeoxyribonuclease	NA	A5VW85	Enterobacteria_phage	66.7	1.9e-39
AXD04650.1|2232141_2232525_+	antitermination protein	NA	Q777W5	Enterobacteria_phage	86.9	3.2e-58
AXD04651.1|2233113_2233320_+	hypothetical protein	NA	NA	NA	NA	NA
AXD07109.1|2233459_2233963_+	hypothetical protein	NA	NA	NA	NA	NA
AXD04652.1|2234151_2234577_+	tellurite/colicin resistance protein	NA	Q71TK7	Escherichia_phage	87.2	2.3e-60
AXD04653.1|2234573_2234726_+	DUF3927 domain-containing protein	NA	S4TRP5	Salmonella_phage	58.7	2.3e-07
AXD04654.1|2234818_2235208_+|holin	holin	holin	Q9MBZ5	Enterobacteria_phage	63.1	2.1e-36
AXD04655.1|2235197_2235479_+|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	49.4	1.3e-16
AXD04656.1|2235475_2236021_+	hypothetical protein	NA	A0A0U2S643	Escherichia_phage	83.4	3.0e-89
AXD04657.1|2236017_2236200_+	hypothetical protein	NA	NA	NA	NA	NA
AXD07110.1|2236390_2236768_+	hypothetical protein	NA	Q6UAR9	Klebsiella_phage	65.4	7.9e-41
AXD04658.1|2237017_2237518_+	DUF1441 family protein	NA	A0A291AWV8	Escherichia_phage	70.5	6.1e-57
AXD04659.1|2237517_2239635_+|terminase	phage terminase large subunit family protein	terminase	A5LH27	Enterobacteria_phage	73.0	4.7e-300
AXD07111.1|2239631_2239850_+	hypothetical protein	NA	NA	NA	NA	NA
AXD04660.1|2239858_2241370_+|portal	phage portal protein	portal	K7PHM5	Enterobacterial_phage	54.1	4.8e-145
AXD04661.1|2241326_2243417_+|protease	Clp protease ClpP	protease	A0A1W6JT88	Pseudomonas_phage	55.7	1.1e-203
AXD04662.1|2243444_2243819_+	DUF2190 family protein	NA	NA	NA	NA	NA
AXD04663.1|2243818_2244175_+	hypothetical protein	NA	NA	NA	NA	NA
AXD04664.1|2244196_2244877_+	hypothetical protein	NA	A0A193GYC6	Enterobacter_phage	29.1	6.2e-12
AXD04665.1|2244891_2245455_+	hypothetical protein	NA	NA	NA	NA	NA
AXD04666.1|2245447_2246068_+|plate	phage baseplate assembly protein V	plate	A0A1B2LRU5	Wolbachia_phage	38.4	2.1e-14
AXD04667.1|2246106_2247576_+|tail	phage tail protein	tail	R9TMQ0	Vibrio_phage	37.6	4.7e-73
AXD04668.1|2247572_2248079_+|tail	phage tail protein	tail	NA	NA	NA	NA
AXD04669.1|2248130_2248430_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
AXD04670.1|2248532_2250191_+	hypothetical protein	NA	A0A2I7R3J9	Vibrio_phage	33.3	5.2e-28
AXD04671.1|2250187_2250667_+|tail	phage tail protein	tail	R9TMP6	Vibrio_phage	42.0	7.2e-23
AXD04672.1|2250641_2250857_+|tail	phage tail protein	tail	R9TR63	Vibrio_phage	51.4	2.8e-11
AXD04673.1|2250865_2251969_+	late control protein D	NA	D4HTW7	Vibrio_phage	36.4	5.5e-34
AXD04674.1|2251971_2252325_+|plate	baseplate assembly protein	plate	V5YTB2	Pseudomonas_phage	49.1	3.8e-21
AXD04675.1|2252308_2253214_+|plate	baseplate assembly protein	plate	D5LGZ3	Escherichia_phage	49.3	1.4e-64
AXD04676.1|2253216_2253771_+|tail	phage tail protein I	tail	A0A193GYD1	Enterobacter_phage	43.8	1.5e-24
AXD04677.1|2253774_2254845_+	hypothetical protein	NA	A0A0M3ULH6	Salmonella_phage	33.6	5.7e-44
AXD04678.1|2254844_2255426_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	66.5	1.5e-67
AXD04679.1|2255489_2258045_+	shikimate transporter	NA	A0A0U2SH60	Escherichia_phage	34.5	1.5e-127
AXD04680.1|2258059_2258638_+	DUF4376 domain-containing protein	NA	Q8W610	Enterobacteria_phage	67.9	3.1e-68
AXD04681.1|2258800_2259004_+	hypothetical protein	NA	NA	NA	NA	NA
AXD04682.1|2258981_2259452_+	DUF2335 domain-containing protein	NA	A0A1B0YZW3	Pseudomonas_phage	32.0	2.6e-09
AXD04683.1|2259494_2260058_-	ORF6N domain-containing protein	NA	A0A0N7C203	Escherichia_phage	75.2	1.3e-52
AXD04684.1|2260035_2260332_-	hypothetical protein	NA	NA	NA	NA	NA
AXD04685.1|2260762_2262058_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	25.8	1.1e-25
AXD04686.1|2262201_2263668_+	mannitol dehydrogenase family protein	NA	G8DCZ3	Micromonas_pusilla_virus	30.0	5.6e-42
AXD04687.1|2263734_2263938_-	putative selenium delivery protein YdfZ	NA	J9Q802	Salmonella_phage	55.2	2.9e-13
AXD04688.1|2264118_2264805_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXD04689.1|2264934_2265681_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AXD04690.1|2265819_2267862_+	peptidyl-dipeptidase Dcp	NA	NA	NA	NA	NA
AXD04691.1|2268205_2268388_+	stress-induced acidophilic repeat motif-containing protein	NA	NA	NA	NA	NA
AXD04692.1|2268507_2269035_-	2-oxo-tetronate isomerase	NA	NA	NA	NA	NA
AXD04693.1|2269461_2269854_+	TIGR00156 family protein	NA	NA	NA	NA	NA
AXD04694.1|2270201_2270297_-	hypothetical protein	NA	NA	NA	NA	NA
AXD04695.1|2270544_2271732_-	transporter	NA	NA	NA	NA	NA
AXD04696.1|2271959_2272862_+	O-acetylserine/cysteine exporter	NA	NA	NA	NA	NA
AXD04697.1|2272980_2273196_-	multiple antibiotic resistance regulatory periplasmic protein MarB	NA	NA	NA	NA	NA
AXD04698.1|2273224_2273659_-	MDR efflux pump AcrAB transcriptional activator MarA	NA	D0R0F8	Streptococcus_phage	32.3	4.1e-09
AXD04699.1|2273627_2274062_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AXD04700.1|2274320_2274986_+	stress protection protein MarC	NA	NA	NA	NA	NA
AXD04701.1|2275032_2276223_-	sugar efflux transporter	NA	NA	NA	NA	NA
AXD04702.1|2276338_2277211_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXD04703.1|2277313_2278702_+	succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AXD04704.1|2278774_2279701_+	glutaminase	NA	NA	NA	NA	NA
AXD04705.1|2279700_2280060_+	DUF4186 domain-containing protein	NA	NA	NA	NA	NA
AXD04706.1|2280283_2281231_+	hypothetical protein	NA	NA	NA	NA	NA
AXD04707.1|2281286_2281829_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
AXD04708.1|2282545_2283664_+	porin	NA	Q1MVN1	Enterobacteria_phage	58.5	1.6e-113
AXD04709.1|2283804_2284146_-	hydrogenase maturation nickel metallochaperone HypA	NA	NA	NA	NA	NA
AXD04710.1|2284158_2285046_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
AXD04711.1|2285033_2286095_-	hydrogenase-1 operon protein HyaF2	NA	NA	NA	NA	NA
AXD04712.1|2286112_2286523_-	hydrogenase	NA	NA	NA	NA	NA
AXD04713.1|2286519_2286819_-	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA	NA
AXD04714.1|2286818_2287427_-	HyaD/HybD family hydrogenase maturation endopeptidase	NA	NA	NA	NA	NA
AXD04715.1|2287432_2288176_-	Ni/Fe-hydrogenase, b-type cytochrome subunit	NA	NA	NA	NA	NA
AXD04716.1|2288126_2289929_-	nickel-dependent hydrogenase large subunit	NA	NA	NA	NA	NA
AXD04717.1|2289931_2291035_-	uptake hydrogenase small subunit	NA	NA	NA	NA	NA
AXD04718.1|2291463_2292555_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
AXD04719.1|2292600_2293392_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AXD04720.1|2293450_2294476_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AXD04721.1|2294450_2295737_-	MFS transporter	NA	NA	NA	NA	NA
AXD04722.1|2295913_2297470_-	PhoPQ-regulated protein	NA	NA	NA	NA	NA
AXD04723.1|2297539_2298781_-	MFS transporter	NA	NA	NA	NA	NA
AXD04724.1|2298770_2300279_-	hypothetical protein	NA	NA	NA	NA	NA
AXD04725.1|2300323_2300812_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AXD04726.1|2301004_2302084_+|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
>prophage 5
CP030175	Salmonella enterica subsp. enterica serovar Milwaukee str. SA19950795 chromosome, complete genome	4822474	2429216	2436425	4822474	tRNA,integrase	Escherichia_phage(60.0%)	8	2425617:2425631	2438714:2438728
2425617:2425631	attL	TGTTATGCGCCGCTA	NA	NA	NA	NA
AXD04834.1|2429216_2429651_+	universal stress protein UspF	NA	A0A1W6JNV4	Morganella_phage	52.1	9.4e-30
AXD04835.1|2429703_2430042_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AXD04836.1|2430316_2432149_-	DUF4765 family protein	NA	A0A0N7KZG3	Stx2-converting_phage	34.7	2.5e-47
AXD04837.1|2432592_2432796_+	hypothetical protein	NA	A0A0U2JGI6	Escherichia_phage	74.2	4.0e-23
AXD04838.1|2432787_2433996_-	hypothetical protein	NA	NA	NA	NA	NA
AXD04839.1|2434001_2435027_-	hypothetical protein	NA	NA	NA	NA	NA
AXD04840.1|2435234_2435441_+|integrase	integrase	integrase	A0A0U2JGI6	Escherichia_phage	76.9	1.6e-24
AXD04841.1|2435489_2436425_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	96.5	8.0e-143
2438714:2438728	attR	TAGCGGCGCATAACA	NA	NA	NA	NA
>prophage 6
CP030175	Salmonella enterica subsp. enterica serovar Milwaukee str. SA19950795 chromosome, complete genome	4822474	2614414	2713664	4822474	protease,terminase,holin,tail,plate,tRNA,integrase	Escherichia_phage(65.75%)	121	2665044:2665059	2720040:2720055
AXD05016.1|2614414_2615110_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
AXD05017.1|2615167_2617078_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	32.7	7.7e-92
AXD05018.1|2617208_2617553_+	RidA family protein	NA	NA	NA	NA	NA
AXD05019.1|2617558_2617738_-	YoaH family protein	NA	NA	NA	NA	NA
AXD05020.1|2617818_2619183_+	aminodeoxychorismate synthase component 1	NA	A0A0B5J984	Pandoravirus	34.8	4.3e-44
AXD05021.1|2619186_2619765_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
AXD05022.1|2620028_2621393_+	L-serine ammonia-lyase	NA	NA	NA	NA	NA
AXD05023.1|2621530_2623132_+	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AXD05024.1|2623153_2624713_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	44.4	9.5e-40
AXD05025.1|2624700_2625036_-	hypothetical protein	NA	NA	NA	NA	NA
AXD05026.1|2625185_2626154_+	PTS mannose transporter subunit IIAB	NA	NA	NA	NA	NA
AXD05027.1|2626206_2627007_+	PTS mannose/fructose/sorbose transporter subunit IIC	NA	NA	NA	NA	NA
AXD05028.1|2627019_2627871_+	PTS mannose transporter subunit IID	NA	NA	NA	NA	NA
AXD05029.1|2627929_2628388_+	DUF986 domain-containing protein	NA	NA	NA	NA	NA
AXD07126.1|2628743_2629364_+	manganese efflux pump MntP	NA	NA	NA	NA	NA
AXD05030.1|2629360_2630170_-	23S rRNA (guanine(745)-N(1))-methyltransferase	NA	NA	NA	NA	NA
AXD05031.1|2630235_2631981_-	peptidoglycan glycosyltransferase FtsI	NA	NA	NA	NA	NA
AXD05032.1|2632200_2632410_-	cold-shock protein CspC	NA	A0A1W6JNX5	Morganella_phage	78.1	1.6e-22
AXD05033.1|2632422_2632566_-	DUF2627 domain-containing protein	NA	NA	NA	NA	NA
AXD05034.1|2633214_2633502_-	hypothetical protein	NA	NA	NA	NA	NA
AXD05035.1|2633572_2633716_-	PhoP/PhoQ regulator MgrB	NA	NA	NA	NA	NA
AXD05036.1|2633873_2634113_+	hypothetical protein	NA	NA	NA	NA	NA
AXD05037.1|2634324_2635116_-	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA	NA
AXD05038.1|2635291_2636665_+	MFS transporter	NA	NA	NA	NA	NA
AXD05039.1|2636712_2637594_-|protease	protease HtpX	protease	NA	NA	NA	NA
AXD05040.1|2637786_2639835_-|tail,protease	tail-specific protease	tail,protease	A0A0R6PIZ1	Moraxella_phage	33.5	8.0e-87
AXD05041.1|2639854_2640541_-	RNA chaperone ProQ	NA	NA	NA	NA	NA
AXD05042.1|2640638_2641223_-	GAF domain-containing protein	NA	NA	NA	NA	NA
AXD05043.1|2641264_2642548_+	paraquat-inducible protein A	NA	NA	NA	NA	NA
AXD05044.1|2642510_2645150_+	MCE family protein	NA	NA	NA	NA	NA
AXD07127.1|2645227_2646667_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA	NA
AXD05045.1|2646781_2647021_+	DUF1480 family protein	NA	NA	NA	NA	NA
AXD05046.1|2647131_2647323_+	DUF1482 family protein	NA	NA	NA	NA	NA
AXD05047.1|2647341_2647992_-	protein-serine/threonine phosphatase	NA	A0A222YWF0	Escherichia_phage	50.5	1.2e-57
AXD05048.1|2648215_2648380_-	hypothetical protein	NA	NA	NA	NA	NA
AXD05049.1|2648665_2649388_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA	NA
AXD05050.1|2650071_2650467_+	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	32.8	7.0e-16
AXD05051.1|2650795_2651272_+	hypothetical protein	NA	NA	NA	NA	NA
AXD05052.1|2651670_2652129_-	hypothetical protein	NA	NA	NA	NA	NA
AXD05053.1|2652400_2652958_-	hypothetical protein	NA	NA	NA	NA	NA
AXD05054.1|2653061_2653271_-	hypothetical protein	NA	NA	NA	NA	NA
AXD05055.1|2653300_2653600_-	hypothetical protein	NA	NA	NA	NA	NA
AXD05056.1|2653778_2654090_+	cytoplasmic protein	NA	NA	NA	NA	NA
AXD05057.1|2654086_2654506_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AXD05058.1|2655645_2656065_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AXD05059.1|2656193_2656388_-	hypothetical protein	NA	NA	NA	NA	NA
AXD05060.1|2656434_2656704_+	hypothetical protein	NA	B6SCX2	Bacteriophage	47.9	1.8e-07
AXD05061.1|2656869_2657010_+	hypothetical protein	NA	NA	NA	NA	NA
AXD05062.1|2657155_2657833_-	hypothetical protein	NA	A0A218MNI5	uncultured_virus	46.7	7.5e-42
AXD05063.1|2657839_2660020_-	E3 ubiquitin--protein ligase	NA	Q9MBL9	Phage_Gifsy-2	74.1	1.2e-56
AXD05064.1|2660138_2660273_-|tail	phage tail protein	tail	NA	NA	NA	NA
AXD05065.1|2660275_2660635_+|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	47.0	3.0e-21
AXD05066.1|2661055_2661619_-	DUF4376 domain-containing protein	NA	A0A0U2QQK4	Escherichia_phage	66.8	8.7e-68
AXD05067.1|2661627_2663904_-|tail	phage tail protein	tail	A0A0U2SH60	Escherichia_phage	57.4	1.2e-104
AXD05068.1|2663967_2664549_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	63.9	7.8e-64
AXD05069.1|2664765_2666088_-|tail	tail fiber protein	tail	A0A0U2SAV1	Escherichia_phage	81.8	1.0e-106
2665044:2665059	attL	AGTCAAAATGTGACGT	NA	NA	NA	NA
AXD05070.1|2666084_2666711_-	hypothetical protein	NA	A0A0U2RK03	Escherichia_phage	96.6	3.5e-118
AXD05071.1|2666694_2667921_-	hypothetical protein	NA	A0A0U2RJZ0	Escherichia_phage	92.4	3.3e-213
AXD07128.1|2668176_2668482_+	hypothetical protein	NA	NA	NA	NA	NA
AXD05072.1|2668762_2669323_+	phage antirepressor Ant	NA	A0A0U2QL80	Escherichia_phage	83.9	2.8e-82
AXD05073.1|2669298_2669646_-	hypothetical protein	NA	A0A0U2I1S2	Escherichia_phage	96.5	6.3e-61
AXD05074.1|2669691_2670246_-	Rha family transcriptional regulator	NA	A0A088CBJ5	Shigella_phage	86.1	1.9e-83
AXD05075.1|2670967_2671681_-|plate	phage baseplate protein	plate	A0A0U2JTX5	Escherichia_phage	93.7	3.5e-122
AXD05076.1|2671680_2672688_-	hypothetical protein	NA	A0A0U2QL72	Escherichia_phage	89.0	6.7e-180
AXD05077.1|2672687_2672954_-	hypothetical protein	NA	A0A0U2JGJ3	Escherichia_phage	89.8	5.6e-41
AXD05078.1|2672950_2673619_-	hypothetical protein	NA	A0A0U2JGI7	Escherichia_phage	92.3	2.3e-115
AXD05079.1|2675744_2676362_-	hypothetical protein	NA	A0A0U2S634	Escherichia_phage	82.4	7.2e-92
AXD05080.1|2676358_2676790_-	hypothetical protein	NA	A0A0U2S616	Escherichia_phage	99.3	4.3e-75
AXD05081.1|2676813_2678151_-	hypothetical protein	NA	A0A0U2KD19	Escherichia_phage	83.6	2.8e-213
AXD05082.1|2678150_2679095_-	hypothetical protein	NA	A0A0U2SH76	Escherichia_phage	88.2	2.9e-156
AXD05083.1|2679081_2679522_-	hypothetical protein	NA	A0A0U2RTA8	Escherichia_phage	82.8	3.7e-66
AXD05084.1|2679518_2679959_-	hypothetical protein	NA	A0A0U2S646	Escherichia_phage	99.3	1.2e-77
AXD05085.1|2679958_2680429_-	hypothetical protein	NA	A0A0U2SAX6	Escherichia_phage	99.4	4.2e-84
AXD05086.1|2680486_2681515_-	hypothetical protein	NA	A0A0U2QQI2	Escherichia_phage	99.4	5.6e-190
AXD05087.1|2681529_2682147_-	hypothetical protein	NA	A0A0U2S600	Escherichia_phage	91.2	1.4e-108
AXD05088.1|2682139_2683444_-	DUF2213 domain-containing protein	NA	A0A0U2QW61	Escherichia_phage	93.8	1.9e-182
AXD07129.1|2683424_2684144_-	hypothetical protein	NA	A0A0U2I1R8	Escherichia_phage	92.9	1.1e-128
AXD05089.1|2684202_2685639_-	DUF1073 domain-containing protein	NA	A0A0U2S5X9	Escherichia_phage	95.6	1.1e-265
AXD05090.1|2685657_2686986_-|terminase	terminase	terminase	A0A0U2JTW9	Escherichia_phage	98.4	2.1e-261
AXD05091.1|2686975_2688067_-|terminase	terminase small subunit	terminase	A0A0U2RXW9	Escherichia_phage	85.9	8.2e-131
AXD07131.1|2688070_2688280_-	hypothetical protein	NA	NA	NA	NA	NA
AXD05092.1|2688338_2689190_-	hypothetical protein	NA	A0A1B1INP7	uncultured_Mediterranean_phage	53.8	3.2e-82
AXD07130.1|2689179_2689971_-	transcriptional regulator	NA	R4TG31	Halovirus	43.2	4.4e-49
AXD07132.1|2690091_2690469_-	hypothetical protein	NA	Q6UAR9	Klebsiella_phage	66.9	2.5e-42
AXD07133.1|2690840_2690954_-	hypothetical protein	NA	A0A2L1IV24	Escherichia_phage	89.2	2.5e-11
AXD05093.1|2691109_2691688_-	hypothetical protein	NA	A0A0U2S643	Escherichia_phage	84.0	6.3e-90
AXD05094.1|2691684_2691966_-|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	49.4	1.3e-16
AXD05095.1|2691955_2692345_-|holin	holin	holin	Q9MBZ5	Enterobacteria_phage	63.1	2.1e-36
AXD05096.1|2692436_2692589_-	DUF3927 domain-containing protein	NA	S4TRP5	Salmonella_phage	58.7	1.7e-07
AXD05097.1|2692585_2693011_-	tellurite/colicin resistance protein	NA	Q71TK7	Escherichia_phage	87.2	2.3e-60
AXD05098.1|2694577_2695144_-	ORF6N domain-containing protein	NA	A0A2R2Z302	Escherichia_phage	72.8	1.6e-45
AXD05099.1|2695967_2696258_-	DUF1364 domain-containing protein	NA	A0A0U2KD41	Escherichia_phage	76.0	1.9e-39
AXD05100.1|2696257_2696857_-	DUF1367 family protein	NA	A0A0U2RT94	Escherichia_phage	91.5	4.2e-105
AXD05101.1|2697382_2697595_-	Hok/Gef family protein	NA	A0A0P0ZAX5	Stx2-converting_phage	94.3	1.2e-27
AXD05102.1|2697829_2698225_-	hypothetical protein	NA	A0A193GYM6	Enterobacter_phage	60.8	8.6e-38
AXD05103.1|2698419_2698731_-	hypothetical protein	NA	A0A222YY67	Escherichia_phage	86.4	7.4e-53
AXD05104.1|2698717_2698978_-	hypothetical protein	NA	A0A0U2RK51	Escherichia_phage	82.1	1.4e-36
AXD05105.1|2698970_2699252_-	DUF4752 family protein	NA	A0A2I6TCB0	Escherichia_phage	86.7	1.4e-37
AXD05106.1|2699248_2699539_-	DUF4406 domain-containing protein	NA	A0A0U2SAZ1	Escherichia_phage	83.9	4.8e-38
AXD05107.1|2699535_2699931_-	DUF977 family protein	NA	A0A0U2QQN3	Escherichia_phage	49.3	2.9e-25
AXD05108.1|2699961_2700708_-	DNA replication protein DnaC	NA	A0A088CBP4	Shigella_phage	79.8	1.7e-111
AXD05109.1|2700714_2701509_-	hypothetical protein	NA	G9L6A8	Escherichia_phage	66.4	3.4e-41
AXD05110.1|2702222_2702636_-	hypothetical protein	NA	NA	NA	NA	NA
AXD05111.1|2702655_2703078_-	hypothetical protein	NA	A0A0U2RXZ9	Escherichia_phage	94.3	2.2e-68
AXD05112.1|2703061_2703337_-	helix-turn-helix domain-containing protein	NA	A0A0U2S629	Escherichia_phage	63.4	3.0e-21
AXD05113.1|2703440_2703908_+	helix-turn-helix domain-containing protein	NA	A0A0U2QW76	Escherichia_phage	66.9	1.0e-53
AXD05114.1|2704142_2704442_+	hypothetical protein	NA	A0A0U2S618	Escherichia_phage	44.4	4.8e-09
AXD05115.1|2705157_2705379_+	cell division protein FtsZ	NA	A0A0U2RTC4	Escherichia_phage	97.3	6.9e-37
AXD07134.1|2705378_2705549_+	hypothetical protein	NA	A0A0U2SHB5	Escherichia_phage	71.4	7.9e-17
AXD05116.1|2705623_2705899_+	hypothetical protein	NA	A0A0U2QW85	Escherichia_phage	97.8	1.2e-43
AXD05117.1|2706000_2708628_+	exodeoxyribonuclease VIII	NA	A0A0U2I1R6	Escherichia_phage	61.9	6.1e-249
AXD05118.1|2708620_2709439_+	recombination protein RecT	NA	A0A1P8DTF2	Proteus_phage	68.4	7.6e-97
AXD07135.1|2709495_2709690_+	restriction alleviation protein, Lar family	NA	A0A0U2QQP4	Escherichia_phage	78.1	1.1e-25
AXD05119.1|2709682_2709871_+	DUF1187 family protein	NA	A0A0U2QL97	Escherichia_phage	88.5	1.7e-23
AXD05120.1|2709978_2710251_+	excisionase	NA	A0A2H4J5E1	uncultured_Caudovirales_phage	44.6	3.2e-12
AXD05121.1|2710225_2711305_+|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	52.4	2.6e-97
AXD05122.1|2711498_2711618_-	hypothetical protein	NA	NA	NA	NA	NA
AXD05123.1|2711675_2712029_-	DUF2511 domain-containing protein	NA	NA	NA	NA	NA
AXD05124.1|2712045_2712921_-	hypothetical protein	NA	NA	NA	NA	NA
AXD05125.1|2712921_2713296_-	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
AXD05126.1|2713433_2713664_+	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
2720040:2720055	attR	AGTCAAAATGTGACGT	NA	NA	NA	NA
>prophage 7
CP030175	Salmonella enterica subsp. enterica serovar Milwaukee str. SA19950795 chromosome, complete genome	4822474	2739433	2790471	4822474	head,holin,tail,tRNA,integrase	Salmonella_phage(75.47%)	64	2732093:2732108	2756458:2756473
2732093:2732108	attL	TGGTAACGGCGTTAAC	NA	NA	NA	NA
AXD05151.1|2739433_2741206_-|tRNA	aspartate--tRNA ligase	tRNA	NA	NA	NA	NA
AXD07138.1|2741530_2742097_+	hydrolase	NA	NA	NA	NA	NA
AXD05152.1|2742419_2743091_+	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	61.7	3.3e-82
AXD05153.1|2744209_2746345_-|integrase	integrase	integrase	NA	NA	NA	NA
AXD07139.1|2746355_2747303_-|integrase	site-specific integrase	integrase	A0A166YH27	Gordonia_phage	28.9	1.6e-05
AXD05154.1|2747635_2748055_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	59.8	3.8e-36
AXD05155.1|2748532_2748772_+	DinI family protein	NA	K7P6H1	Enterobacteria_phage	79.7	4.4e-29
AXD05156.1|2749159_2749681_+	hypothetical protein	NA	NA	NA	NA	NA
AXD05157.1|2749793_2750873_+	hypothetical protein	NA	NA	NA	NA	NA
AXD05158.1|2750998_2751376_-|tail	phage tail protein	tail	E7EKV7	Edwardsiella_phage	60.7	2.7e-33
AXD05159.1|2752205_2752886_-	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	98.2	1.2e-127
AXD05160.1|2752882_2754082_-	hypothetical protein	NA	A0A0M4RD32	Salmonella_phage	97.2	1.5e-213
AXD05161.1|2754082_2754436_-	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	97.4	2.1e-59
AXD05162.1|2754435_2755191_-	translation initiation factor IF-2	NA	A0A0M5M1K7	Salmonella_phage	92.8	2.6e-128
AXD05163.1|2755413_2755779_+	hypothetical protein	NA	NA	NA	NA	NA
AXD05164.1|2755798_2756131_-	hypothetical protein	NA	A0A0M4RTY3	Salmonella_phage	69.6	6.5e-23
AXD05165.1|2756127_2757201_-	hypothetical protein	NA	A0A0M4QX01	Salmonella_phage	96.9	5.5e-188
2756458:2756473	attR	GTTAACGCCGTTACCA	NA	NA	NA	NA
AXD05166.1|2757203_2757506_-	hypothetical protein	NA	A0A0M4R5B7	Salmonella_phage	99.0	1.6e-52
AXD05167.1|2757505_2758081_-	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	100.0	2.4e-97
AXD05168.1|2758080_2760090_-	lytic transglycosylase	NA	A0A0M4REK7	Salmonella_phage	98.4	0.0e+00
AXD07140.1|2760079_2760256_-	NTP pyrophosphohydrolase	NA	A0A2H4J1A2	uncultured_Caudovirales_phage	72.9	4.7e-12
AXD05169.1|2760267_2760720_-	hypothetical protein	NA	A0A0M4S6U8	Salmonella_phage	79.6	1.3e-61
AXD05170.1|2760723_2761164_-	DUF3277 family protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.0	5.9e-56
AXD05171.1|2761175_2762321_-	DUF3383 domain-containing protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	75.1	2.7e-164
AXD05172.1|2762324_2762888_-	hypothetical protein	NA	A0A0M4R331	Salmonella_phage	75.3	8.9e-81
AXD05173.1|2762862_2763252_-|head,tail	head-tail adaptor	head,tail	A0A0M3ULK0	Salmonella_phage	98.4	7.8e-68
AXD05174.1|2763238_2763793_-	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	100.0	4.8e-95
AXD05175.1|2763789_2764197_-	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	100.0	3.8e-73
AXD05176.1|2764162_2764531_-	hypothetical protein	NA	A0A0M4RTX5	Salmonella_phage	100.0	8.7e-61
AXD05177.1|2764572_2765514_-	DUF2184 domain-containing protein	NA	A0A0M3ULD3	Salmonella_phage	99.7	2.0e-178
AXD05178.1|2765525_2766023_-	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	100.0	3.0e-88
AXD05179.1|2766027_2767260_-	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	100.0	1.9e-229
AXD07141.1|2767274_2767808_-|head	phage head morphogenesis protein	head	A0A0M4REK0	Salmonella_phage	98.3	2.1e-95
AXD05180.1|2767896_2769366_-	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	99.0	4.9e-280
AXD05181.1|2769365_2770988_-	TerL protein	NA	A0A0M5M1R6	Salmonella_phage	99.4	0.0e+00
AXD05182.1|2770990_2771620_-	hypothetical protein	NA	A0A0M3ULJ9	Salmonella_phage	100.0	5.4e-111
AXD05183.1|2771680_2772184_-	hypothetical protein	NA	NA	NA	NA	NA
AXD05184.1|2772286_2772808_-	DUF2514 family protein	NA	NA	NA	NA	NA
AXD05185.1|2772804_2773431_-	glycoside hydrolase family 19 protein	NA	Q858F0	Salmonella_phage	79.7	1.3e-93
AXD05186.1|2773433_2773781_-|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	80.4	9.8e-46
AXD05187.1|2774179_2774977_-	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	6.8e-151
AXD05188.1|2774966_2775113_-	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	95.8	1.2e-18
AXD05189.1|2775109_2775721_-	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	97.5	1.1e-89
AXD05190.1|2775723_2775930_-	hypothetical protein	NA	S4TNP0	Salmonella_phage	100.0	3.5e-35
AXD05191.1|2775929_2776532_-	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.5	7.5e-110
AXD05192.1|2776614_2776836_-	hypothetical protein	NA	NA	NA	NA	NA
AXD05193.1|2776946_2777180_-	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	5.6e-37
AXD05194.1|2777471_2777762_-	hypothetical protein	NA	NA	NA	NA	NA
AXD05195.1|2778002_2778311_-	DUF977 family protein	NA	H6WRX9	Salmonella_phage	96.9	1.4e-48
AXD05196.1|2778321_2779071_-	DNA replication protein DnaC	NA	S4TNF5	Salmonella_phage	100.0	4.3e-139
AXD05197.1|2779073_2780057_-	hypothetical protein	NA	H6WRX7	Salmonella_phage	98.7	8.9e-161
AXD05198.1|2780141_2780462_-	hypothetical protein	NA	A0A0M4RU01	Salmonella_phage	100.0	1.3e-52
AXD05199.1|2780496_2780724_-	transcriptional regulator	NA	H6WRX5	Salmonella_phage	45.9	1.7e-14
AXD05200.1|2780829_2781264_+	helix-turn-helix domain-containing protein	NA	H6WRX4	Salmonella_phage	38.2	2.5e-14
AXD05201.1|2781560_2781719_+	hypothetical protein	NA	H6WRX3	Salmonella_phage	96.2	4.5e-22
AXD05202.1|2781740_2782091_+	DNA breaking-rejoining protein	NA	S4TSN6	Salmonella_phage	95.7	1.6e-59
AXD05203.1|2782217_2785145_+	exodeoxyribonuclease	NA	S4TNL0	Salmonella_phage	99.4	0.0e+00
AXD05204.1|2785107_2786265_+	enterohemolysin	NA	S4TTE8	Salmonella_phage	99.7	1.0e-216
AXD05205.1|2786307_2786547_+	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
AXD05206.1|2786878_2787115_+	excisionase	NA	Q8W657	Enterobacteria_phage	93.6	3.5e-39
AXD05207.1|2787173_2788487_+	DUF3596 domain-containing protein	NA	Q8W658	Enterobacteria_phage	87.8	4.6e-229
AXD05208.1|2788465_2789239_+	DUF72 domain-containing protein	NA	Q859D1	Escherichia_coli_phage	80.3	5.5e-57
AXD05209.1|2789291_2789687_+	hypothetical protein	NA	NA	NA	NA	NA
AXD05210.1|2789727_2790471_+	carboxy-S-adenosyl-L-methionine synthase CmoA	NA	F5B419	Synechococcus_phage	30.9	4.1e-25
>prophage 8
CP030175	Salmonella enterica subsp. enterica serovar Milwaukee str. SA19950795 chromosome, complete genome	4822474	3897820	3933340	4822474	transposase,head,plate,tail	Vibrio_phage(46.34%)	52	NA	NA
AXD06205.1|3897820_3898528_+	thiamine ABC transporter ATP-binding protein ThiQ	NA	G3M9Y6	Bacillus_virus	37.8	1.8e-22
AXD06206.1|3898604_3899321_-	protein mom	NA	A0A0C4UQZ7	Shigella_phage	93.5	1.4e-126
AXD06207.1|3899271_3899457_-	Com family DNA-binding transcriptional regulator	NA	A0A0C4UQS3	Shigella_phage	71.0	2.9e-20
AXD06208.1|3899580_3900156_-	DUF4376 domain-containing protein	NA	Q8W610	Enterobacteria_phage	73.6	1.2e-72
AXD06209.1|3900170_3902693_-	shikimate transporter	NA	A0A0U2SH60	Escherichia_phage	47.6	4.7e-113
AXD06210.1|3902679_3903210_-|tail	phage tail protein	tail	A0A0U2QV64	Escherichia_phage	54.0	4.1e-51
AXD06211.1|3903227_3904223_-|tail	phage tail protein	tail	Q71TP5	Escherichia_phage	46.5	8.8e-47
AXD06212.1|3904226_3904811_-	DUF2313 domain-containing protein	NA	M4M9M8	Vibrio_phage	45.1	4.8e-45
AXD06213.1|3904795_3905872_-|plate	phage baseplate protein	plate	A0A2I7S9E5	Vibrio_phage	51.5	1.5e-92
AXD06214.1|3905861_3906314_-	hypothetical protein	NA	A0A2I7S9F0	Vibrio_phage	41.7	9.8e-22
AXD06215.1|3906310_3906847_-|plate	phage baseplate assembly protein V	plate	A0A2I7S9F6	Vibrio_phage	39.7	1.9e-24
AXD06216.1|3906837_3907908_-|tail	phage tail protein	tail	M4M9L5	Vibrio_phage	46.9	7.6e-89
AXD06217.1|3907907_3909182_-	multidrug DMT transporter	NA	A0A2I7S9E8	Vibrio_phage	38.3	1.3e-74
AXD06218.1|3909181_3910978_-|tail	phage tail protein	tail	M4MHE6	Vibrio_phage	32.6	1.2e-65
AXD06219.1|3911064_3911460_-	hypothetical protein	NA	M4MB64	Vibrio_phage	47.9	1.4e-19
AXD06220.1|3911461_3911818_-|tail	phage tail protein	tail	A0A2P1A4D6	Alteromonadaceae_phage	35.5	2.9e-13
AXD06221.1|3911827_3913303_-|tail	phage tail protein	tail	M1Q565	Vibrio_phage	54.9	2.7e-153
AXD06222.1|3913302_3913503_-	DUF2635 domain-containing protein	NA	NA	NA	NA	NA
AXD06223.1|3913468_3914080_-	hypothetical protein	NA	M1PJ94	Vibrio_phage	43.8	6.2e-35
AXD06224.1|3914076_3914619_-	phage morphogenesis protein	NA	A0A2I7S9D7	Vibrio_phage	62.0	1.7e-57
AXD06225.1|3914618_3915056_-	DUF1320 domain-containing protein	NA	A0A2I7S9E9	Vibrio_phage	50.3	3.7e-34
AXD06226.1|3915061_3915367_-	hypothetical protein	NA	NA	NA	NA	NA
AXD06227.1|3915438_3916341_-|head	phage head protein	head	M4MB71	Vibrio_phage	57.2	1.5e-98
AXD06228.1|3916340_3917303_-	peptidase	NA	M1Q578	Vibrio_phage	46.6	6.0e-77
AXD06229.1|3917517_3918282_-	hypothetical protein	NA	M4M9M5	Vibrio_phage	60.1	6.2e-93
AXD06230.1|3918274_3919846_-	DUF935 domain-containing protein	NA	A0A2I7S9K0	Vibrio_phage	56.7	6.2e-156
AXD07184.1|3919842_3921369_-	hypothetical protein	NA	M1NVQ0	Vibrio_phage	68.4	3.2e-197
AXD06231.1|3921374_3921956_-	DUF3486 family protein	NA	M1PJ86	Vibrio_phage	55.5	2.4e-49
AXD06232.1|3921945_3922233_-	hypothetical protein	NA	NA	NA	NA	NA
AXD07185.1|3922235_3922523_-	ArsR family transcriptional regulator	NA	A0A0C4UR00	Shigella_phage	60.6	2.7e-25
AXD06233.1|3922528_3922834_-	DUF2730 family protein	NA	M1Q558	Vibrio_phage	39.4	3.6e-12
AXD06234.1|3922818_3923046_-	TraR/DksA family transcriptional regulator	NA	NA	NA	NA	NA
AXD06235.1|3923042_3923651_-	hypothetical protein	NA	NA	NA	NA	NA
AXD06236.1|3923638_3924049_-	hypothetical protein	NA	NA	NA	NA	NA
AXD06237.1|3924032_3924260_-	hypothetical protein	NA	A0A0C4UQR6	Shigella_phage	67.1	2.4e-24
AXD06238.1|3924261_3924849_-	peptidoglycan-binding protein	NA	K4PXD6	Edwardsiella_phage	38.5	1.5e-17
AXD06239.1|3924948_3925446_-	hypothetical protein	NA	NA	NA	NA	NA
AXD06240.1|3925442_3925844_-	transcriptional regulator	NA	A0A0C4UR27	Shigella_phage	61.9	5.1e-38
AXD06241.1|3925840_3926392_-	regulatory protein GemA	NA	A0A0C4UQU3	Shigella_phage	80.7	7.1e-83
AXD06242.1|3926369_3926705_-	hypothetical protein	NA	NA	NA	NA	NA
AXD06243.1|3926682_3926880_-	hypothetical protein	NA	NA	NA	NA	NA
AXD06244.1|3926872_3927115_-	hypothetical protein	NA	NA	NA	NA	NA
AXD06245.1|3927086_3927401_-	hypothetical protein	NA	NA	NA	NA	NA
AXD06246.1|3927441_3927966_-	host-nuclease inhibitor protein Gam	NA	A0A0C4UQY5	Shigella_phage	93.7	1.5e-85
AXD06247.1|3927984_3928272_-	hypothetical protein	NA	C9DGL7	Escherichia_phage	68.4	2.2e-27
AXD06248.1|3928284_3928704_-	hypothetical protein	NA	A0A0C4UR25	Shigella_phage	81.5	2.5e-59
AXD06249.1|3928724_3928994_-	hypothetical protein	NA	C9DGL5	Escherichia_phage	52.8	2.5e-17
AXD06250.1|3929026_3929254_-	hypothetical protein	NA	A0A0C4UQY4	Shigella_phage	85.3	3.4e-31
AXD06251.1|3929267_3930206_-	DNA transposition protein	NA	A0A0C4UQR3	Shigella_phage	89.4	6.3e-156
AXD06252.1|3930244_3932326_-|transposase	transposase	transposase	A0A2D1GNK9	Pseudomonas_phage	51.2	5.3e-179
AXD06253.1|3932328_3932577_-	DNA-binding protein	NA	A0A2D1GNH1	Pseudomonas_phage	86.6	7.2e-35
AXD06254.1|3932728_3933340_+	hypothetical protein	NA	A0A2D1GNR8	Pseudomonas_phage	56.6	8.0e-43
>prophage 1
CP030176	Salmonella enterica subsp. enterica serovar Milwaukee str. SA19950795 plasmid pIncFII.1, complete sequence	148530	64576	109888	148530	protease,transposase,integrase	Stx2-converting_phage(17.65%)	45	56458:56473	111198:111213
56458:56473	attL	TGGCAGACATAATTCC	NA	NA	NA	NA
AXD07285.1|64576_65365_+|integrase	phage integrase family protein	integrase	I3WFA4	Macacine_betaherpesvirus	92.9	1.9e-52
AXD07286.1|65868_66564_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AXD07287.1|66834_67125_-	hypothetical protein	NA	NA	NA	NA	NA
AXD07288.1|67444_69559_-	colicin V synthesis protein	NA	W8CYL7	Bacillus_phage	27.6	3.0e-36
AXD07289.1|69533_70775_-	colicin V secretion protein CvaA	NA	NA	NA	NA	NA
AXD07365.1|70912_71386_-	toxin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
AXD07290.1|71408_72959_-	MchC protein	NA	NA	NA	NA	NA
AXD07366.1|75081_75777_-	RepB family plasmid replication initiator protein	NA	I3WF20	Macacine_betaherpesvirus	32.5	1.0e-25
AXD07367.1|76385_77282_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXD07291.1|77259_78048_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXD07292.1|78049_79348_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	34.1	2.2e-58
AXD07293.1|79813_81223_-	GntP family permease	NA	NA	NA	NA	NA
AXD07294.1|81301_82609_-	histidinol dehydrogenase	NA	NA	NA	NA	NA
AXD07295.1|82788_83811_+	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	30.3	3.2e-28
AXD07296.1|84250_85117_+	ParA family protein	NA	NA	NA	NA	NA
AXD07297.1|85116_86148_+	ParB/RepB/Spo0J family partition protein	NA	S5WII0	Leptospira_phage	27.5	2.0e-09
AXD07298.1|86147_86585_+	hypothetical protein	NA	NA	NA	NA	NA
AXD07299.1|86644_86860_-	hypothetical protein	NA	NA	NA	NA	NA
AXD07300.1|88075_90211_-|integrase	integrase	integrase	NA	NA	NA	NA
AXD07368.1|90221_91169_-|integrase	site-specific integrase	integrase	A0A166YH27	Gordonia_phage	28.9	1.6e-05
AXD07301.1|91498_91921_-	peptidase	NA	A0A1W6JNS2	Morganella_phage	52.4	7.8e-29
AXD07302.1|92140_92344_-	hypothetical protein	NA	NA	NA	NA	NA
AXD07303.1|92447_92918_+	hypothetical protein	NA	NA	NA	NA	NA
AXD07304.1|92910_93267_+	hypothetical protein	NA	NA	NA	NA	NA
AXD07369.1|93294_93486_-	hypothetical protein	NA	NA	NA	NA	NA
AXD07305.1|93801_95502_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	53.2	5.7e-171
AXD07306.1|96082_96733_+	DNA methylase	NA	A0A2I7RE86	Vibrio_phage	35.3	1.1e-21
AXD07307.1|96732_96954_+	hypothetical protein	NA	NA	NA	NA	NA
AXD07308.1|97009_97423_+	DUF1380 domain-containing protein	NA	NA	NA	NA	NA
AXD07309.1|97494_98259_+	hypothetical protein	NA	NA	NA	NA	NA
AXD07370.1|98754_99189_+	antirestriction protein	NA	NA	NA	NA	NA
AXD07310.1|99255_99690_+	DUF1380 domain-containing protein	NA	NA	NA	NA	NA
AXD07371.1|99920_100175_+	hydroxyacid-oxoacid transhydrogenase	NA	Q71T70	Escherichia_phage	66.2	3.3e-19
AXD07311.1|100364_100817_+	N-acetyltransferase	NA	NA	NA	NA	NA
AXD07312.1|100973_101624_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZBP6	Stx2-converting_phage	42.4	3.6e-17
AXD07313.1|101623_101971_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	77.6	5.2e-47
AXD07314.1|101990_103562_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	59.1	2.0e-170
AXD07373.1|104173_104389_-	hypothetical protein	NA	NA	NA	NA	NA
AXD07315.1|104474_105032_+	single-stranded DNA-binding protein	NA	A0A0A0P1Q9	Enterobacteria_phage	73.2	4.3e-51
AXD07372.1|105084_105327_+	DUF905 domain-containing protein	NA	NA	NA	NA	NA
AXD07316.1|105395_107426_+	chromosome partitioning protein ParB	NA	G8DH78	Emiliania_huxleyi_virus	29.3	4.7e-15
AXD07317.1|107467_107899_+	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA	NA
AXD07318.1|107895_108624_+	plasmid SOS inhibition protein A	NA	NA	NA	NA	NA
AXD07319.1|108616_108826_+	hypothetical protein	NA	NA	NA	NA	NA
AXD07320.1|108952_109888_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	49.1	5.5e-59
111198:111213	attR	TGGCAGACATAATTCC	NA	NA	NA	NA
