The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	2917985	1496	20726	2917985	capsid,integrase,protease,terminase	Staphylococcus_phage(63.16%)	25	4033:4049	17989:18005
AKR51049.1|1496_2522_+	methionine import ATP-binding protein MetN 2	NA	G3M9Y6	Bacillus_virus	33.3	3.9e-26
AKR51048.2|2514_3210_+	ABC transporter permease	NA	NA	NA	NA	NA
AKR51047.1|3227_4049_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
4033:4049	attL	TTATTCCTGCTAAATAA	NA	NA	NA	NA
AKR51046.1|4191_5412_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.5	2.9e-100
AKR51045.1|5499_6228_-	exotoxin	NA	A0EX09	Staphylococcus_phage	31.8	1.2e-21
AKR51044.2|6251_6980_-	exotoxin	NA	A0EX09	Staphylococcus_phage	34.1	1.6e-26
AKR51043.1|6996_7455_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2I6PEK4	Staphylococcus_phage	82.1	4.3e-65
AKR51042.1|7466_7799_-	XRE family transcriptional regulator	NA	A0A1J0MFC1	Staphylococcus_phage	74.5	1.6e-37
AKR51041.1|7991_8255_+	XRE family transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	94.8	4.1e-36
AKR51040.1|8247_8520_+	pathogenicity island protein	NA	Q4ZE77	Staphylococcus_phage	88.9	4.8e-40
AKR51039.1|8531_8705_+	pathogenicity island protein	NA	NA	NA	NA	NA
AKR51038.1|8671_8875_+	pathogenicity island protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
AKR51037.1|8876_9260_+	pathogenicity island protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.9	4.4e-63
AKR51036.1|9260_9509_+	hypothetical protein	NA	Q4ZE75	Staphylococcus_phage	58.6	1.4e-22
AKR51035.1|9600_11973_+	DNA primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	39.3	9.8e-137
AKR51034.1|12643_12988_+	pathogenicity island protein	NA	A0A1W6JQD5	Staphylococcus_phage	65.2	9.4e-41
AKR51033.1|13212_13419_+	hypothetical protein	NA	NA	NA	NA	NA
AKR51032.1|13405_14464_+|capsid	phage capsid protein	capsid	A0A0K2CZ99	Paenibacillus_phage	26.6	3.6e-14
AKR51031.1|14647_15139_+	pathogenicity island protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	40.5	7.9e-25
AVI02115.1|15135_15291_+|terminase	terminase	terminase	A0A1W6JQF0	Staphylococcus_phage	92.0	3.1e-20
AKR51030.1|15567_16536_+|protease	CAAX protease	protease	A0A0H4U080	Erysipelothrix_phage	27.3	5.9e-24
AKR51029.1|16770_17325_-	hypothetical protein	NA	A0A1W6JQE5	Staphylococcus_phage	76.1	4.8e-71
AKR51028.1|18358_18553_+	CsbD family protein	NA	NA	NA	NA	NA
17989:18005	attR	TTATTCCTGCTAAATAA	NA	NA	NA	NA
AKR51027.1|18785_19637_-	DUF368 domain-containing protein	NA	NA	NA	NA	NA
AKR51026.1|19964_20726_+	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
>prophage 2
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	2917985	181642	190115	2917985		Synechococcus_phage(33.33%)	9	NA	NA
AKR50876.1|181642_182125_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
AKR50875.1|182111_183236_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AKR50874.1|183239_183944_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
AKR50873.1|183943_184207_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AKR50872.1|184208_184880_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
AKR50871.1|184872_187062_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
AKR50870.1|187040_188525_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
AKR50869.1|188517_189546_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
AKR50868.1|189548_190115_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 3
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	2917985	667956	719146	2917985	portal,integrase,head,terminase,protease,tail,capsid,holin	Staphylococcus_phage(97.01%)	69	668271:668291	714164:714184
AKR50445.2|667956_668208_-	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	2.4e-25
668271:668291	attL	AATCCGCCCTTTTTTTGCCCT	NA	NA	NA	NA
AKR50444.2|668390_669374_-	Panton-Valentine bi-component leukocidin subunit F	NA	A0A2I6PEU3	Staphylococcus_phage	100.0	4.0e-185
AKR50443.1|669369_670308_-	Panton-Valentine bi-component leukocidin subunit S	NA	A0A2I6PER8	Staphylococcus_phage	100.0	3.7e-180
AKR50442.1|670697_672152_-	CHAP domain-containing protein	NA	A0A2I6PET7	Staphylococcus_phage	100.0	5.7e-289
AKR50441.1|672162_672465_-|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
AKR50440.1|672600_672900_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
AKR50439.1|672945_673110_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
AKR50438.1|673102_673492_-	hypothetical protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
AKR50437.1|673491_674958_-	DUF2479 domain-containing protein	NA	A0A2I6PES7	Staphylococcus_phage	100.0	1.5e-273
AKR50436.1|674957_676868_-	hypothetical protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
AKR50435.1|676883_677174_-	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
AKR50434.1|677173_678757_-	peptidase	NA	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
AKR50433.1|678765_679590_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
AKR50432.1|679589_685790_-|tail	phage tail tape measure protein	tail	A0A1X9IGU9	Staphylococcus_phage	99.7	0.0e+00
AKR50431.1|685803_685962_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
AKR50430.1|686003_686354_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
AKR50429.1|686411_686867_-|tail	phage tail protein	tail	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
AKR50428.1|686958_687600_-|tail	phage tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
AKR50427.1|687634_688030_-	DUF3168 domain-containing protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
AKR50426.1|688030_688432_-	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
AKR50425.1|688428_688761_-	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
AKR50424.1|688772_689051_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
AKR50423.1|689119_690283_-|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
AKR50422.1|690294_691068_-|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
AKR50421.1|691051_692290_-|portal	phage portal protein	portal	A0A2I6PER5	Staphylococcus_phage	100.0	6.9e-235
AKR50420.1|692294_693986_-|terminase	terminase large subunit	terminase	A0A1X9IGU0	Staphylococcus_phage	100.0	0.0e+00
AKR50419.1|693975_694281_-|terminase	phage terminase small subunit P27 family	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
AKR50418.1|694407_694722_-	HNH endonuclease	NA	A0A2I6PEN4	Staphylococcus_phage	100.0	5.0e-57
AKR50417.1|694878_695316_-	transcriptional regulator	NA	A0A2I6PEN3	Staphylococcus_phage	100.0	7.9e-77
AKR50416.2|695328_696696_-	ATP-dependent helicase	NA	A0A2I6PE95	Staphylococcus_phage	99.8	3.0e-263
AKR50415.1|696676_696967_-	VRR-NUC domain-containing protein	NA	A0A2I6PE31	Staphylococcus_phage	100.0	6.5e-51
AVI01901.1|697100_697199_+	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	3.7e-11
AKR50413.1|697307_699755_-	hypothetical protein	NA	A0A2I6PEP4	Staphylococcus_phage	100.0	0.0e+00
AVI01902.1|699809_700016_+	hypothetical protein	NA	A0A1X9IGZ9	Staphylococcus_phage	100.0	7.6e-30
AKR50412.1|700042_700243_-	DUF1514 domain-containing protein	NA	A0A2I6PEP5	Staphylococcus_phage	100.0	4.9e-26
AKR50411.1|700310_700463_-	transcriptional regulator	NA	A0A2I6PEM5	Staphylococcus_phage	100.0	2.0e-19
AKR50410.1|700459_700846_-	hypothetical protein	NA	A0A1X9IGZ2	Staphylococcus_phage	100.0	3.0e-64
AKR50409.1|700838_701075_-	hypothetical protein	NA	A0A2I6PEM4	Staphylococcus_phage	100.0	2.8e-36
AKR50408.1|701067_701271_-	hypothetical protein	NA	A0A2I6PEQ8	Staphylococcus_phage	100.0	3.4e-30
AKR50407.1|701267_701474_-	DUF1381 domain-containing protein	NA	A0A2I6PEM9	Staphylococcus_phage	100.0	1.6e-19
AKR50406.1|701510_702047_-	dUTPase	NA	A0A2I6PEN6	Staphylococcus_phage	100.0	1.6e-95
AKR50405.1|702039_702288_-	DUF1024 domain-containing protein	NA	A0A2I6PEP2	Staphylococcus_phage	100.0	1.4e-38
AKR50404.1|702302_702545_-	hypothetical protein	NA	A0A2I6PEV3	Staphylococcus_phage	100.0	1.5e-40
AKR50403.1|702559_702760_-	hypothetical protein	NA	A0A2I6PEM3	Staphylococcus_phage	100.0	2.5e-30
AKR50402.1|702762_703020_-	DUF3310 domain-containing protein	NA	A0A2I6PEN5	Staphylococcus_phage	100.0	2.6e-43
AKR50401.1|703019_703421_-	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
AKR50400.1|703420_703606_-	DUF3113 domain-containing protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
AKR50399.2|703618_705571_-	DNA polymerase	NA	A0A2I6PEL4	Staphylococcus_phage	100.0	0.0e+00
AKR50398.1|705638_706196_-	DUF2815 domain-containing protein	NA	A0A2I6PEP8	Staphylococcus_phage	100.0	1.8e-97
AKR50397.1|706221_707388_-	DUF2800 domain-containing protein	NA	A0A2I6PEL9	Staphylococcus_phage	100.0	1.4e-221
AKR50396.1|707384_707747_-	hypothetical protein	NA	A0A2I6PEM7	Staphylococcus_phage	100.0	3.7e-56
AKR50395.2|707760_708045_-	DUF1108 domain-containing protein	NA	A0A2I6PEM2	Staphylococcus_phage	100.0	1.5e-47
AKR50394.1|708025_708328_-	hypothetical protein	NA	A0A1X9IGX2	Staphylococcus_phage	100.0	2.4e-48
AKR50393.1|708320_708638_-	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	100.0	1.1e-35
AKR50392.1|708903_709167_-	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
AKR50391.1|709191_709407_-	hypothetical protein	NA	A0A2I6PEK7	Staphylococcus_phage	100.0	1.0e-32
AKR50390.2|709453_709693_+	hypothetical protein	NA	A0A2I6PE22	Staphylococcus_phage	100.0	6.7e-38
AKR50388.1|709949_710141_-	XRE family transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
AKR50387.1|710301_710631_+	XRE family transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
AKR50386.2|710643_711105_+	toxin	NA	A0A2I6PEK4	Staphylococcus_phage	98.7	2.9e-85
AKR50385.1|711122_711557_+	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	96.5	3.6e-21
AKR50384.1|711585_711981_+	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
AKR50383.2|712070_712217_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	1.2e-16
AKR50382.1|712213_712828_-	ATPase	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
AKR50381.1|712953_714159_+|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
AKR50380.1|714201_715356_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	97.7	3.9e-115
714164:714184	attR	AATCCGCCCTTTTTTTGCCCT	NA	NA	NA	NA
AKR50379.1|715382_716228_-	hypothetical protein	NA	NA	NA	NA	NA
AKR50378.2|716220_717150_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
AKR50377.2|717394_719146_-	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
>prophage 4
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	2917985	774977	783289	2917985	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
AKR50313.1|774977_775763_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
AKR50312.1|775888_776779_-	endonuclease	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
AKR50311.1|776788_778135_-	DEAD/DEAH box family ATP-dependent RNA helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
AKR50310.1|778248_779349_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
AKR50309.1|779351_780029_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
AKR50308.1|780159_781266_-	RNA polymerase sigma factor SigA	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
AKR50307.1|781489_783289_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
>prophage 5
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	2917985	852426	861469	2917985	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
AKR50237.1|852426_852945_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
AKR50236.1|852966_855240_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
AKR50235.1|855442_857722_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
AKR50234.1|857996_858257_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
AKR50233.1|858275_859415_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
AKR50232.1|859437_860463_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AKR50231.1|860464_861469_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 6
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	2917985	986925	1066268	2917985	bacteriocin,transposase,protease,tRNA	Staphylococcus_phage(96.61%)	78	NA	NA
AKR50124.1|986925_993486_-	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	2.0e-304
AKR50123.1|993811_994123_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	99.0	4.8e-52
AKR50122.2|994144_996562_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
AKR50121.2|996849_998031_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
AKR50120.1|998140_999094_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
AKR50119.1|999090_999654_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
AKR50118.1|999773_1000175_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AKR50115.1|1001753_1002581_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AVI01924.1|1002583_1002703_-	hypothetical protein	NA	NA	NA	NA	NA
AVI01925.1|1002714_1002906_-	hypothetical protein	NA	NA	NA	NA	NA
AKR50114.1|1002814_1003816_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
AKR50113.1|1003937_1004402_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
AKR50112.1|1004414_1005596_-	riboflavin biosynthesis protein RibBA	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
AKR50111.1|1005606_1006239_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
AKR50110.2|1006245_1007277_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	4.8e-197
AKR50109.1|1007769_1009272_-	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
AVI01926.1|1009794_1010109_+	ArsR family transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
AKR50108.2|1010108_1011401_+	arsenical efflux pump membrane protein ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
AKR50107.1|1011418_1011814_+	protein ArsC	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
AKR50106.1|1012108_1012963_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
AKR50105.1|1013238_1013463_-	hypothetical protein	NA	NA	NA	NA	NA
AKR50104.2|1013661_1014132_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
AVI01927.1|1014244_1014688_+	competence protein ComK	NA	NA	NA	NA	NA
AKR50102.1|1014674_1015118_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
AKR50101.1|1015413_1016049_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AKR50100.1|1016488_1017202_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
AKR50099.1|1017461_1017764_+	hypothetical protein	NA	NA	NA	NA	NA
AKR50098.1|1018019_1018385_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	1.4e-58
AKR50097.1|1018381_1018735_+	camphor resistance protein CrcB	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
AKR50094.1|1020829_1021663_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
AKR50093.1|1021874_1022783_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
AKR50092.1|1022907_1024101_-	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
AKR50091.1|1024471_1026064_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
AKR50089.2|1027059_1027806_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
AKR50088.1|1027810_1028284_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
AKR50087.1|1028349_1028607_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
AKR50086.1|1028603_1029605_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
AKR50085.1|1029609_1031088_-	2-succinylbenzoate-CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
AKR50084.2|1031246_1031702_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
AKR52825.2|1032004_1032655_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
AKR52824.1|1032735_1033731_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
AKR52822.1|1033962_1034433_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	80.1	7.0e-63
AKR52821.1|1034473_1034818_+	DUF3969 domain-containing protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
AKR52820.1|1034915_1035467_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
AKR52819.2|1035684_1036326_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
AKR52818.1|1036439_1036625_-	hypothetical protein	NA	NA	NA	NA	NA
AKR52817.1|1036626_1036803_-	hypothetical protein	NA	NA	NA	NA	NA
AKR52816.1|1036813_1037197_-	hypothetical protein	NA	NA	NA	NA	NA
AVI01928.1|1037388_1037598_-|transposase	transposase	transposase	A0A2H4PQV6	Staphylococcus_phage	100.0	1.4e-31
AKR52815.1|1037800_1037944_-	hypothetical protein	NA	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
AVI01929.1|1038364_1038466_+	hypothetical protein	NA	NA	NA	NA	NA
AKR52814.2|1038813_1039173_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
AKR52813.2|1039711_1043383_-	ATP-binding protein	NA	A0A2H4PQT3	Staphylococcus_phage	100.0	0.0e+00
AVI01930.1|1043406_1043823_-	hypothetical protein	NA	NA	NA	NA	NA
AKR52812.1|1044672_1045872_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
AKR52811.2|1045864_1047604_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.4	4.4e-288
AVI01931.1|1047584_1047719_-	hypothetical protein	NA	NA	NA	NA	NA
AKR52810.1|1047783_1048503_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
AKR52809.1|1048653_1049370_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
AVI01932.1|1049471_1049579_+	hypothetical protein	NA	NA	NA	NA	NA
AKR52808.1|1049527_1050247_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
AKR52807.1|1050367_1051087_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
AKR52806.1|1051144_1051867_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
AKR52805.1|1051991_1052699_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
AVI01933.1|1053134_1053353_-	hypothetical protein	NA	NA	NA	NA	NA
AKR52804.1|1053662_1054229_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	99.5	1.2e-98
AKR52803.1|1054702_1055401_-	BsaG protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
AKR52802.1|1055397_1056159_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
AKR52801.1|1056155_1056848_-	lantibiotic ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
AKR52800.1|1056870_1058244_-	peptidase S8	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
AKR52799.1|1058253_1058772_-	enterotoxin	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
AKR52798.1|1058787_1060032_-	lanthionine synthetase	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
AKR52797.1|1060024_1063018_-|bacteriocin	bacteriocin biosynthesis protein	bacteriocin	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
AKR52796.1|1063082_1063226_-	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
AVI01934.1|1063669_1063861_+	hypothetical protein	NA	NA	NA	NA	NA
AVI01935.1|1063962_1064106_-	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
AKR52795.1|1064347_1065331_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
AKR52794.1|1065332_1066268_-	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
>prophage 7
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	2917985	1096928	1172092	2917985	portal,integrase,head,terminase,tRNA,tail,transposase,capsid,holin	Staphylococcus_phage(67.61%)	95	1123751:1123765	1172434:1172448
AKR52767.1|1096928_1097399_-|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
AKR52766.2|1097403_1098546_-	epoxyqueuosine reductase	NA	NA	NA	NA	NA
AKR52765.2|1098681_1099410_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
AKR52764.1|1099396_1100854_-	ABC transporter permease	NA	NA	NA	NA	NA
AKR52763.1|1101111_1102173_-	PTS transporter subunit IIC	NA	NA	NA	NA	NA
AKR52762.1|1102665_1104027_+|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
AVI01941.1|1104002_1104116_+	hypothetical protein	NA	NA	NA	NA	NA
AKR52761.1|1112440_1112887_-	transcriptional repressor	NA	NA	NA	NA	NA
AKR52760.1|1112983_1113934_-	hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
AKR52759.1|1113939_1114395_-	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA	NA
AKR52758.1|1114475_1115765_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
AKR52757.1|1116057_1117152_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
AVI01942.1|1117241_1117334_-	hypothetical protein	NA	NA	NA	NA	NA
AKR52756.1|1117342_1119079_-	multidrug ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.4	1.7e-53
AKR52755.1|1119369_1119912_-	DUF402 domain-containing protein	NA	NA	NA	NA	NA
AKR52754.1|1120213_1121251_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AKR52753.1|1121402_1122380_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
AVI01943.1|1122483_1122714_+	hypothetical protein	NA	NA	NA	NA	NA
AKR52752.1|1122640_1123477_-	hypothetical protein	NA	NA	NA	NA	NA
AKR52751.1|1123485_1125003_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
1123751:1123765	attL	CTATTAAAGTATGCA	NA	NA	NA	NA
AKR52750.1|1125017_1125332_-	DUF1811 domain-containing protein	NA	NA	NA	NA	NA
AKR52749.1|1125309_1126128_-	regulatory protein RecX	NA	NA	NA	NA	NA
AKR52748.1|1126388_1127198_-	glycosyltransferase	NA	NA	NA	NA	NA
AKR52747.1|1127538_1128054_-	type 1 glutamine amidotransferase	NA	NA	NA	NA	NA
AKR52746.1|1128184_1128346_-	hypothetical protein	NA	NA	NA	NA	NA
AVI01944.1|1128672_1128774_+	hypothetical protein	NA	NA	NA	NA	NA
AKR52745.1|1128887_1129445_-	hypothetical protein	NA	W5R8Q1	Staphylococcus_phage	100.0	5.7e-104
AKR52744.2|1130080_1130281_-	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	100.0	3.7e-29
AVI01945.1|1130267_1130378_-	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
AKR52743.2|1130448_1130601_-	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
AKR52742.1|1130844_1132290_-	CHAP domain-containing protein	NA	S4V6E6	Staphylococcus_phage	100.0	1.8e-295
AKR52741.1|1132270_1132708_-|holin	phage holin	holin	S4V690	Staphylococcus_phage	100.0	1.2e-72
AKR52740.1|1132763_1133159_-	hypothetical protein	NA	S4V997	Staphylococcus_phage	100.0	1.6e-68
AKR52739.1|1133164_1134337_-	DUF2479 domain-containing protein	NA	S4V7L6	Staphylococcus_phage	100.0	3.8e-198
AKR52738.1|1134349_1136248_-	CHAP domain-containing protein	NA	S4V9N2	Staphylococcus_phage	98.7	0.0e+00
AKR52737.1|1136384_1136684_-	hypothetical protein	NA	A0A0F6N3M6	Staphylococcus_phage	99.0	1.3e-46
AKR52736.2|1136724_1136898_-	XkdX family protein	NA	A0A059T7K6	Staphylococcus_phage	100.0	1.3e-27
AKR52735.1|1136901_1137279_-	DUF2977 domain-containing protein	NA	Q4ZDT8	Staphylococcus_virus	99.2	8.1e-54
AKR52734.1|1137278_1139102_-	DUF2479 domain-containing protein	NA	A0A0H3U4S6	Staphylococcus_phage	99.2	0.0e+00
AKR52733.1|1139101_1141012_-	hypothetical protein	NA	A0A0F6N4K2	Staphylococcus_phage	98.9	0.0e+00
AKR52732.1|1141026_1142928_-	peptidase	NA	Q8SDT5	Staphylococcus_phage	99.4	0.0e+00
AKR52731.1|1142936_1143884_-|tail	phage tail family protein	tail	A0EWU0	Staphylococcus_virus	100.0	3.6e-183
AKR52730.1|1143896_1147361_-	hypothetical protein	NA	S4V989	Staphylococcus_phage	98.6	3.1e-264
AKR52729.1|1147377_1147722_-	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
AKR52728.1|1147751_1148117_-|tail	phage tail protein	tail	A0A0F6N4J9	Staphylococcus_phage	100.0	3.6e-59
AKR52727.1|1148179_1148761_-|tail	phage major tail protein, TP901-1 family	tail	A0EWT6	Staphylococcus_virus	99.5	7.0e-105
AKR52726.1|1148780_1149164_-	hypothetical protein	NA	A0A0F6N3L1	Staphylococcus_phage	99.2	2.9e-67
AKR52725.1|1149175_1149523_-	hypothetical protein	NA	I1W643	Staphylococcus_phage	99.1	2.0e-59
AKR52724.1|1149522_1149825_-	hypothetical protein	NA	S4SUQ1	Staphylococcus_phage	92.0	1.1e-48
AKR52723.1|1149821_1150154_-|head,tail	phage head-tail adapter protein	head,tail	A0A0F6N3F4	Staphylococcus_phage	98.2	6.1e-53
AKR52722.1|1150162_1150450_-	hypothetical protein	NA	Q8SDU4	Staphylococcus_phage	98.9	1.4e-45
AKR52721.1|1150471_1151446_-|capsid	phage major capsid protein	capsid	B7T0D2	Staphylococcus_virus	98.1	1.0e-180
AKR52720.1|1151459_1152074_-	DUF4355 domain-containing protein	NA	I1W646	Staphylococcus_phage	100.0	2.9e-40
AKR52719.1|1152208_1152379_-	hypothetical protein	NA	Q4ZDF2	Staphylococcus_virus	100.0	3.3e-23
AKR52718.1|1152451_1153447_-|head	phage head morphogenesis protein	head	E0Y3K7	Staphylococcus_virus	99.4	3.8e-183
AKR52717.1|1153453_1154989_-|portal	phage portal protein	portal	Q4ZDN2	Staphylococcus_virus	97.8	1.3e-286
AKR52716.1|1154999_1156295_-|terminase	PBSX family phage terminase large subunit	terminase	A0A0F6N3L3	Staphylococcus_phage	98.1	3.5e-253
AKR52715.1|1156297_1156792_-|terminase	terminase small subunit	terminase	B7T0C5	Staphylococcus_virus	97.0	9.6e-87
AKR52714.1|1156978_1157398_-	transcriptional regulator	NA	B7T0C4	Staphylococcus_virus	99.3	2.4e-70
AKR52713.1|1157412_1157559_-	hypothetical protein	NA	A0A059T5A8	Staphylococcus_phage	97.9	6.4e-15
AKR52712.2|1157559_1157748_-	transcriptional regulator	NA	Q77FU4	Staphylococcus_phage	95.2	9.7e-24
AKR52711.1|1157735_1157936_-	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
AKR52710.1|1157910_1158099_-	DUF1381 domain-containing protein	NA	A0A2I6PF34	Staphylococcus_phage	96.8	5.7e-24
AVI01946.1|1158095_1158341_-	hypothetical protein	NA	B7T0C1	Staphylococcus_virus	100.0	5.3e-22
AKR52709.1|1158377_1158914_-	dUTPase	NA	A0A1P8L6E0	Staphylococcus_phage	100.0	2.1e-95
AKR52708.1|1158906_1159155_-	DUF1024 domain-containing protein	NA	Q9B0F3	Staphylococcus_virus	98.8	7.0e-38
AKR52707.1|1159147_1159513_-	acetyltransferase	NA	A0A0F6N3K4	Staphylococcus_phage	94.5	1.2e-49
AKR52706.1|1159509_1159914_-	hypothetical protein	NA	A0A0E3T8H9	Staphylococcus_phage	98.5	4.6e-71
AKR52705.2|1159926_1160169_-	hypothetical protein	NA	Q4ZDP7	Staphylococcus_virus	96.2	7.3e-40
AKR52704.1|1160172_1160532_-	hypothetical protein	NA	B7T0B4	Staphylococcus_virus	70.7	3.5e-38
AKR52703.1|1160532_1160718_-	DUF3113 domain-containing protein	NA	Q4ZA46	Staphylococcus_virus	100.0	4.1e-27
AKR52702.1|1160722_1161127_-	DUF1064 domain-containing protein	NA	A7TWN5	Staphylococcus_phage	97.8	3.0e-70
AKR52701.1|1161136_1161358_-	hypothetical protein	NA	A7TWN4	Staphylococcus_phage	100.0	1.3e-35
AVI01947.1|1161370_1161529_-	hypothetical protein	NA	Q4ZBL5	Staphylococcus_phage	96.2	9.9e-22
AKR52700.1|1161522_1162296_-	DNA replication protein DnaC	NA	A0A2H4PQI3	Staphylococcus_phage	98.4	3.3e-142
AKR52699.1|1162305_1163109_-	replication protein	NA	A0A2H4JCF5	uncultured_Caudovirales_phage	99.6	2.5e-121
AKR52698.1|1163080_1163377_-	hypothetical protein	NA	A0A1W6JP61	Staphylococcus_phage	50.0	2.1e-17
AKR52697.1|1163544_1163859_-	hypothetical protein	NA	A0A2H4J5K3	uncultured_Caudovirales_phage	63.4	8.3e-28
AKR52696.1|1163858_1164524_-	hypothetical protein	NA	Q4ZDY3	Staphylococcus_virus	100.0	1.1e-125
AKR52695.2|1164536_1165037_-	single-strand DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	100.0	7.2e-90
AKR52694.1|1165120_1165900_-	chromosomal replication initiator DnaA	NA	Q9G028	Staphylococcus_virus	99.6	7.4e-142
AKR52693.1|1165892_1166114_-	DUF2483 domain-containing protein	NA	A7TWM6	Staphylococcus_phage	98.6	9.3e-34
AKR52692.1|1166123_1166384_-	hypothetical protein	NA	Q4ZBM7	Staphylococcus_phage	97.7	2.9e-42
AVI01948.1|1166477_1166639_-	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
AKR52691.1|1166631_1166853_-	hypothetical protein	NA	A0A1X9H0Q4	Staphylococcus_phage	100.0	1.5e-31
AKR52690.1|1166923_1167169_+	hypothetical protein	NA	E9LT77	Staphylococcus_phage	97.5	1.0e-36
AKR52689.1|1167124_1167340_-	hypothetical protein	NA	E9LT76	Staphylococcus_phage	98.6	5.0e-32
AKR52688.1|1167370_1167565_-	hypothetical protein	NA	A0A1X9H0A2	Staphylococcus_phage	98.4	3.3e-19
AKR52687.1|1167581_1168370_-	phage antirepressor	NA	R9QSV3	Staphylococcus_phage	99.2	1.0e-143
AKR52686.1|1168385_1168604_-	XRE family transcriptional regulator	NA	Q8SDX1	Staphylococcus_phage	100.0	2.9e-35
AKR52685.1|1168745_1169465_+	XRE family transcriptional regulator	NA	A0A2H4PQQ2	Staphylococcus_phage	100.0	1.3e-132
AKR52684.1|1169534_1169702_+	hypothetical protein	NA	Q4ZDJ4	Staphylococcus_virus	100.0	1.7e-24
AKR52683.1|1169841_1170774_+	hypothetical protein	NA	A0EX19	Staphylococcus_virus	100.0	6.7e-174
AKR52682.1|1170753_1170933_-	excisionase	NA	Q4ZBP0	Staphylococcus_phage	100.0	3.7e-25
AKR52681.1|1171045_1172092_+|integrase	site-specific integrase	integrase	Q38045	Staphylococcus_phage	99.4	6.1e-200
1172434:1172448	attR	CTATTAAAGTATGCA	NA	NA	NA	NA
>prophage 8
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	2917985	1207501	1295107	2917985	portal,integrase,head,terminase,protease,tail,capsid,holin	Staphylococcus_phage(92.41%)	114	1256293:1256310	1281224:1281241
AKR52648.1|1207501_1208668_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
AKR52647.1|1208698_1209025_+	staphostatin A	NA	NA	NA	NA	NA
AKR52646.1|1209276_1209450_-	NETI motif-containing protein	NA	NA	NA	NA	NA
AKR52645.1|1209430_1210033_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
AKR52644.1|1210303_1211125_-	NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	1.8e-69
AKR52643.1|1211117_1212587_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	4.5e-108
AKR52642.1|1212770_1213847_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
AKR52641.1|1213866_1214661_+	ACT domain-containing protein	NA	NA	NA	NA	NA
AVI01953.1|1214732_1214840_+	hypothetical protein	NA	NA	NA	NA	NA
AKR52640.1|1214850_1216413_-	sodium-dependent dicarboxylate transporter SdcS	NA	NA	NA	NA	NA
AKR52639.1|1216617_1217715_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	1.9e-47
AKR52638.1|1218086_1218647_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
AKR52637.1|1218699_1219629_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
AKR52636.2|1219823_1219997_-	hypothetical protein	NA	NA	NA	NA	NA
AKR52635.1|1220048_1221428_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AKR52634.1|1221547_1222576_-	hypothetical protein	NA	NA	NA	NA	NA
AKR52633.1|1222845_1223247_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
AKR52632.1|1223819_1223993_-	hypothetical protein	NA	NA	NA	NA	NA
AKR52631.1|1224443_1225484_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
AKR52630.1|1225540_1226383_-	hypothetical protein	NA	NA	NA	NA	NA
AKR52629.1|1226379_1226937_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
AKR52628.1|1226996_1227521_-	hypothetical protein	NA	NA	NA	NA	NA
AKR52627.1|1227641_1228205_+	thioredoxin family protein	NA	NA	NA	NA	NA
AKR52626.1|1228270_1229011_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
AKR52625.1|1229010_1229883_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
AKR52624.1|1229879_1230560_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
AKR52623.1|1230560_1231457_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
AKR52622.1|1231453_1231834_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AKR52621.1|1232097_1232274_-	hypothetical protein	NA	NA	NA	NA	NA
AVI01954.1|1232516_1232615_-	hypothetical protein	NA	NA	NA	NA	NA
AKR52620.1|1232814_1234101_+	aspartate aminotransferase	NA	NA	NA	NA	NA
AKR52619.1|1234424_1234715_-	MAP domain-containing protein	NA	NA	NA	NA	NA
AKR52618.1|1234725_1236480_-	MAP domain-containing protein	NA	NA	NA	NA	NA
AKR52617.2|1236865_1237066_+	hypothetical protein	NA	A0A1P8L6A7	Staphylococcus_phage	100.0	3.4e-27
AKR52616.1|1237437_1237617_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
AVI01955.1|1237640_1237949_+	hypothetical protein	NA	M9NTD8	Staphylococcus_phage	100.0	2.1e-39
AKR52615.2|1237927_1238188_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
AKR52614.1|1238240_1238591_-	inhibitor	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
AKR52613.1|1239275_1239725_+	chemotaxis inhibitory protein	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
AVI01956.1|1239819_1240278_-	amidase	NA	R9QTN8	Staphylococcus_phage	98.7	4.9e-85
AKR52611.1|1240804_1241296_-	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
AKR52610.1|1241486_1242242_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
AKR52609.1|1242253_1242508_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
AVI01957.1|1242559_1242667_+	hypothetical protein	NA	NA	NA	NA	NA
AKR52608.2|1242719_1242896_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
AKR52607.1|1243045_1243342_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
AKR52606.1|1243399_1243687_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
AKR52605.1|1243733_1243886_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
AKR52604.1|1243875_1247661_-	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.4	0.0e+00
AKR52603.1|1247676_1249161_-|tail	phage tail protein	tail	A0A0H3U501	Staphylococcus_phage	100.0	2.0e-297
AKR52602.1|1249157_1253687_-|tail	phage tail tape measure protein	tail	A0A1X9H084	Staphylococcus_phage	95.0	0.0e+00
AKR52600.1|1253931_1254282_-	hypothetical protein	NA	A0A0H3U503	Staphylococcus_phage	100.0	1.3e-58
AVI01958.1|1254331_1254571_-	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	94.6	4.0e-30
AKR52598.1|1254597_1255242_-|tail	phage tail protein	tail	A0A0H3U4E6	Staphylococcus_phage	100.0	6.5e-120
AVI01959.1|1255245_1255650_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	95.5	1.4e-67
AKR52597.1|1255646_1256051_-	hypothetical protein	NA	A0A0H3U2V1	Staphylococcus_phage	100.0	8.7e-70
AKR52596.1|1256047_1256410_-|head,tail	phage head-tail adapter protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
1256293:1256310	attL	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
AKR52595.1|1256393_1256678_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
AKR52594.1|1256667_1256952_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
AKR52593.1|1256971_1258117_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
AKR52592.1|1258140_1258878_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
AKR52591.1|1258861_1260049_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
AKR52590.1|1260064_1261726_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
AKR52589.1|1261722_1262067_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
AKR52588.1|1262196_1262496_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
AKR52587.1|1262727_1263144_-	transcriptional regulator	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
AKR52586.1|1263171_1263372_-	hypothetical protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
AKR52585.1|1263371_1263521_-	transcriptional regulator	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
AKR52584.1|1263517_1263904_-	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
AKR52583.1|1263900_1264107_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
AKR52582.1|1264103_1264349_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
AKR52581.1|1264385_1264919_-	dUTP pyrophosphatase	NA	A0A0H3U2T1	Staphylococcus_phage	100.0	1.6e-95
AKR52580.1|1264911_1265154_-	hypothetical protein	NA	A0A2I6PF40	Staphylococcus_phage	100.0	3.7e-36
AKR52579.1|1265143_1265380_-	DUF1024 domain-containing protein	NA	A0A0H3U313	Staphylococcus_phage	100.0	5.3e-35
AKR52578.2|1265372_1265744_-	acetyltransferase	NA	A0A0H3U4X7	Staphylococcus_phage	97.3	4.7e-54
AKR52577.2|1265752_1265995_-	hypothetical protein	NA	A0A0H3U4B0	Staphylococcus_phage	100.0	1.1e-40
AKR52576.1|1265998_1266367_-	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
AKR52575.1|1266379_1266784_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0H3U2W2	Staphylococcus_phage	100.0	1.4e-72
AKR52574.1|1266792_1267011_-	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
AKR52573.1|1267017_1267911_-	DnaD domain protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
AKR52572.1|1267940_1268411_-	single-stranded DNA-binding protein	NA	A0A0H3U4B5	Staphylococcus_phage	100.0	4.4e-81
AKR52571.2|1268411_1269029_-	MBL fold metallo-hydrolase	NA	A0A0H3U2T4	Staphylococcus_phage	100.0	4.1e-87
AKR52570.1|1269109_1270030_-	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
AKR52569.1|1270031_1271975_-	ATPase	NA	A0A2I6PDH3	Staphylococcus_phage	94.7	0.0e+00
AVI01960.1|1271983_1272247_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
AKR52568.1|1272255_1272516_-	DUF1108 domain-containing protein	NA	A0A0H3U2T6	Staphylococcus_phage	100.0	6.8e-44
AKR52567.1|1272555_1272816_-	hypothetical protein	NA	A0A0H3U2W4	Staphylococcus_phage	100.0	9.3e-41
AVI01961.1|1272910_1273072_-	DUF1270 domain-containing protein	NA	A0A0H3U4Y7	Staphylococcus_phage	100.0	3.8e-21
AKR52566.1|1273068_1273389_-	DUF771 domain-containing protein	NA	A0A0H3U4C3	Staphylococcus_phage	100.0	1.5e-56
AKR52565.2|1273447_1273678_+	hypothetical protein	NA	A0A0H3U2T9	Staphylococcus_phage	100.0	9.4e-37
AKR52563.1|1273866_1274619_-	oxidoreductase	NA	A0A0H3U319	Staphylococcus_phage	100.0	5.6e-139
AKR52562.1|1274669_1274999_+	hypothetical protein	NA	A0A0H3U4Z1	Staphylococcus_phage	100.0	4.6e-53
AVI01962.1|1274987_1275203_-	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
AKR52561.1|1275218_1275482_-	XRE family transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
AVI01963.1|1275478_1275652_-	transcriptional regulator	NA	NA	NA	NA	NA
AKR52560.1|1275614_1276328_+	XRE family transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
AKR52559.1|1276343_1277276_+	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
AKR52558.1|1277281_1277623_+	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
AKR52557.1|1277826_1278009_+	hypothetical protein	NA	A0A0H3U4Z4	Staphylococcus_phage	100.0	4.1e-27
AKR52556.1|1278086_1278800_+	toxin MazF	NA	A0A1X9H026	Staphylococcus_phage	100.0	5.0e-129
AKR52555.1|1278990_1280028_+|integrase	site-specific integrase	integrase	A0A1X9H022	Staphylococcus_phage	99.7	3.8e-178
AKR52553.1|1281146_1282163_-	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.0	1.1e-25
1281224:1281241	attR	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
AKR52552.1|1282184_1283240_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
AKR52551.1|1283674_1284898_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AKR52550.1|1285269_1286115_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AKR52549.1|1286176_1287088_-	ferrichrome ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AKR52548.1|1287248_1288556_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
AKR52547.1|1289408_1289852_-	N-acetyltransferase	NA	NA	NA	NA	NA
AKR52546.2|1290016_1290394_-	hypothetical protein	NA	NA	NA	NA	NA
AKR52545.1|1290711_1291302_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	95.8	1.1e-97
AVI01964.1|1291298_1291511_-	pathogenicity island family protein	NA	Q4ZE86	Staphylococcus_phage	74.3	1.1e-23
AKR52544.1|1292212_1293829_-	molecular chaperone GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
AKR52543.1|1293904_1294189_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
AKR52542.1|1294363_1295107_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 9
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	2917985	2806179	2813999	2917985		Hokovirus(16.67%)	10	NA	NA
AKR51157.1|2806179_2807235_-	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
AKR51156.1|2807234_2807921_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AKR51155.1|2807895_2808369_-	DoxX family protein	NA	NA	NA	NA	NA
AKR51154.1|2808710_2809151_-	hypothetical protein	NA	NA	NA	NA	NA
AKR51153.1|2809430_2810015_-	hypothetical protein	NA	NA	NA	NA	NA
AKR51152.1|2810113_2810827_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
AKR51151.1|2810830_2811250_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
AKR51150.1|2811251_2811920_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
AKR51149.1|2812270_2812864_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
AKR51148.1|2812847_2813999_+	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
>prophage 10
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	2917985	2825971	2840702	2917985		uncultured_Caudovirales_phage(50.0%)	18	NA	NA
AKR51138.1|2825971_2827030_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
AKR51137.1|2827380_2827923_+	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
AVI02103.1|2828035_2828134_+	hypothetical protein	NA	NA	NA	NA	NA
AKR51136.1|2828546_2829464_-	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
AVI02104.1|2829554_2829656_+	hypothetical protein	NA	NA	NA	NA	NA
AKR51135.1|2829733_2831239_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
AVI02105.1|2831304_2831550_-	hypothetical protein	NA	NA	NA	NA	NA
AKR51134.1|2831579_2832080_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
AKR51133.1|2832099_2832966_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AVI02106.1|2833350_2833617_+	ribonucleoside-diphosphate reductase	NA	NA	NA	NA	NA
AKR51132.1|2833766_2834165_+	protein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
AKR51131.1|2834127_2836233_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
AKR51130.1|2836350_2837322_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
AVI02107.1|2837454_2837559_+	hypothetical protein	NA	NA	NA	NA	NA
AVI02108.1|2837835_2837991_+	hypothetical protein	NA	NA	NA	NA	NA
AKR51129.1|2838029_2839001_+	iron ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
AKR51128.1|2838987_2839944_+	iron ABC transporter permease	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
AKR51127.1|2839940_2840702_+	iron ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
