bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	1.1|62775|26|CP012119|CRT	CP012119.2	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	96.15	26	1	0	1	26	62719	62744	62745-63027|196418-196505|1182044-1182122|1416894-1417044|1540812-1541005|2457003-2457103|2698711-2698803|2874520-2874605|2917791-2917872	1e-05	39.6	1.0	CGGGGCCCCAACACAGAGGCTGGCGG	62719-62744	CGGGGCCCCAACACAGAGGCTGGTGG	1
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	1.1|62775|26|CP012119|CRT	CP012119.2	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	92.31	26	2	0	1	26	1982155	1982130	62745-63027|196418-196505|1182044-1182122|1416894-1417044|1540812-1541005|2457003-2457103|2698711-2698803|2874520-2874605|2917791-2917872	1e-04	36.5	1.0	CGGGGCCCCAACACAGAGGCTGGCGG	1982130-1982155	CCGCCAGCTTCTATGTTGGGGCCCCG	2
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	1.1|62775|26|CP012119|CRT	CP012119.2	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	92.31	26	2	0	1	26	1982211	1982186	62745-63027|196418-196505|1182044-1182122|1416894-1417044|1540812-1541005|2457003-2457103|2698711-2698803|2874520-2874605|2917791-2917872	1e-04	36.5	1.0	CGGGGCCCCAACACAGAGGCTGGCGG	1982186-1982211	CCGCCAGCTTCTTTGTTGGGGCCCCG	2
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	1.1|62775|26|CP012119|CRT	CP012119.2	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	92.31	26	2	0	1	26	2837488	2837513	62745-63027|196418-196505|1182044-1182122|1416894-1417044|1540812-1541005|2457003-2457103|2698711-2698803|2874520-2874605|2917791-2917872	1e-04	36.5	1.0	CGGGGCCCCAACACAGAGGCTGGCGG	2837488-2837513	CGGGGCCCCAACACAGAAGCAGGCGG	2
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	1.3|62889|26|CP012119|CRT	CP012119.2	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	96.15	26	1	0	1	26	2874631	2874606	62745-63027|196418-196505|1182044-1182122|1416894-1417044|1540812-1541005|2457003-2457103|2698711-2698803|2874520-2874605|2917791-2917872	1e-05	39.6	1.0	CGGGGCCCCAACACAGAAGCTGGCGA	2874606-2874631	TCGTCAGCTTCTGTGTTGGGGCCCCG	1
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	1.3|62889|26|CP012119|CRT	CP012119.2	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	92.31	26	2	0	1	26	2418336	2418361	62745-63027|196418-196505|1182044-1182122|1416894-1417044|1540812-1541005|2457003-2457103|2698711-2698803|2874520-2874605|2917791-2917872	1e-04	36.5	1.0	CGGGGCCCCAACACAGAAGCTGGCGA	2418336-2418361	CGGGGCCCCAACAAAGAAGCTGACGA	2
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	3.1|1182067|33|CP012119|CRISPRCasFinder	CP012119.2	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	96.97	33	1	0	1	33	280781	280749	62745-63027|196418-196505|1182044-1182122|1416894-1417044|1540812-1541005|2457003-2457103|2698711-2698803|2874520-2874605|2917791-2917872	1e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	280749-280781	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	1
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	3.1|1182067|33|CP012119|CRISPRCasFinder	CP012119.2	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	96.97	33	1	0	1	33	488931	488899	62745-63027|196418-196505|1182044-1182122|1416894-1417044|1540812-1541005|2457003-2457103|2698711-2698803|2874520-2874605|2917791-2917872	1e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	488899-488931	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	1
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	3.1|1182067|33|CP012119|CRISPRCasFinder	CP012119.2	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	96.97	33	1	0	1	33	803415	803447	62745-63027|196418-196505|1182044-1182122|1416894-1417044|1540812-1541005|2457003-2457103|2698711-2698803|2874520-2874605|2917791-2917872	1e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	803415-803447	CATTATAGTAAGCTGACTTTTCGTCAGCTTCTG	1
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	3.1|1182067|33|CP012119|CRISPRCasFinder	CP012119.2	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	96.97	33	1	0	1	33	1816780	1816812	62745-63027|196418-196505|1182044-1182122|1416894-1417044|1540812-1541005|2457003-2457103|2698711-2698803|2874520-2874605|2917791-2917872	1e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	1816780-1816812	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	1
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	3.1|1182067|33|CP012119|CRISPRCasFinder	CP012119.2	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	96.97	33	1	0	1	33	2874586	2874618	62745-63027|196418-196505|1182044-1182122|1416894-1417044|1540812-1541005|2457003-2457103|2698711-2698803|2874520-2874605|2917791-2917872	1e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	2874586-2874618	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	1
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	3.1|1182067|33|CP012119|CRISPRCasFinder	CP012119.2	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	93.94	33	2	0	1	33	578182	578214	62745-63027|196418-196505|1182044-1182122|1416894-1417044|1540812-1541005|2457003-2457103|2698711-2698803|2874520-2874605|2917791-2917872	1e-07	47.5	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	578182-578214	CATTATTGTAAGCTGACTTTTCGTCATCTTCTG	2
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	5.1|1540835|33|CP012119|CRT	CP012119.2	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	93.94	33	2	0	1	33	280781	280749	62745-63027|196418-196505|1182044-1182122|1416894-1417044|1540812-1541005|2457003-2457103|2698711-2698803|2874520-2874605|2917791-2917872	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	280749-280781	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	5.1|1540835|33|CP012119|CRT	CP012119.2	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	93.94	33	2	0	1	33	488931	488899	62745-63027|196418-196505|1182044-1182122|1416894-1417044|1540812-1541005|2457003-2457103|2698711-2698803|2874520-2874605|2917791-2917872	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	488899-488931	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	5.1|1540835|33|CP012119|CRT	CP012119.2	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	93.94	33	2	0	1	33	578182	578214	62745-63027|196418-196505|1182044-1182122|1416894-1417044|1540812-1541005|2457003-2457103|2698711-2698803|2874520-2874605|2917791-2917872	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	578182-578214	CATTATTGTAAGCTGACTTTTCGTCATCTTCTG	2
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	5.1|1540835|33|CP012119|CRT	CP012119.2	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	93.94	33	2	0	1	33	1816780	1816812	62745-63027|196418-196505|1182044-1182122|1416894-1417044|1540812-1541005|2457003-2457103|2698711-2698803|2874520-2874605|2917791-2917872	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1816780-1816812	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	5.1|1540835|33|CP012119|CRT	CP012119.2	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	93.94	33	2	0	1	33	2874586	2874618	62745-63027|196418-196505|1182044-1182122|1416894-1417044|1540812-1541005|2457003-2457103|2698711-2698803|2874520-2874605|2917791-2917872	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	2874586-2874618	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	5.2|1540891|36|CP012119|CRT	CP012119.2	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	100.00	36	0	0	1	36	280728	280693	62745-63027|196418-196505|1182044-1182122|1416894-1417044|1540812-1541005|2457003-2457103|2698711-2698803|2874520-2874605|2917791-2917872	6e-11	58.6	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	280693-280728	TAGAGAATTTCAAAAAGAAATTCTACAGACAATGCA	0
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	5.2|1540891|36|CP012119|CRT	CP012119.2	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	97.22	36	1	0	1	36	981897	981862	62745-63027|196418-196505|1182044-1182122|1416894-1417044|1540812-1541005|2457003-2457103|2698711-2698803|2874520-2874605|2917791-2917872	5e-10	55.5	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	981862-981897	TAGAGAATTTCGAAAAGAAATTCTACAGACAATGCA	1
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	5.2|1540891|36|CP012119|CRT	CP012119.2	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	94.44	36	2	0	1	36	803354	803389	62745-63027|196418-196505|1182044-1182122|1416894-1417044|1540812-1541005|2457003-2457103|2698711-2698803|2874520-2874605|2917791-2917872	5e-09	52.3	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	803354-803389	TGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTA	2
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	5.2|1540891|36|CP012119|CRT	CP012119.2	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	94.44	36	2	0	1	36	1192811	1192846	62745-63027|196418-196505|1182044-1182122|1416894-1417044|1540812-1541005|2457003-2457103|2698711-2698803|2874520-2874605|2917791-2917872	5e-09	52.3	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1192811-1192846	TGCATTGTCTGTAGAATTTCCTTTCGAAATTCTCTA	2
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	5.3|1540950|33|CP012119|CRT	CP012119.2	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	93.94	33	2	0	1	33	280781	280749	62745-63027|196418-196505|1182044-1182122|1416894-1417044|1540812-1541005|2457003-2457103|2698711-2698803|2874520-2874605|2917791-2917872	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	280749-280781	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	5.3|1540950|33|CP012119|CRT	CP012119.2	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	93.94	33	2	0	1	33	488931	488899	62745-63027|196418-196505|1182044-1182122|1416894-1417044|1540812-1541005|2457003-2457103|2698711-2698803|2874520-2874605|2917791-2917872	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	488899-488931	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	5.3|1540950|33|CP012119|CRT	CP012119.2	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	93.94	33	2	0	1	33	1816780	1816812	62745-63027|196418-196505|1182044-1182122|1416894-1417044|1540812-1541005|2457003-2457103|2698711-2698803|2874520-2874605|2917791-2917872	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	1816780-1816812	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	5.3|1540950|33|CP012119|CRT	CP012119.2	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	93.94	33	2	0	1	33	2874586	2874618	62745-63027|196418-196505|1182044-1182122|1416894-1417044|1540812-1541005|2457003-2457103|2698711-2698803|2874520-2874605|2917791-2917872	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	2874586-2874618	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	8.1|2874550|26|CP012119|CRISPRCasFinder	CP012119.2	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	96.15	26	1	0	1	26	1982130	1982155	62745-63027|196418-196505|1182044-1182122|1416894-1417044|1540812-1541005|2457003-2457103|2698711-2698803|2874520-2874605|2917791-2917872	1e-05	39.6	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	1982130-1982155	CCGCCAGCTTCTATGTTGGGGCCCCG	1
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	8.1|2874550|26|CP012119|CRISPRCasFinder	CP012119.2	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	96.15	26	1	0	1	26	1982186	1982211	62745-63027|196418-196505|1182044-1182122|1416894-1417044|1540812-1541005|2457003-2457103|2698711-2698803|2874520-2874605|2917791-2917872	1e-05	39.6	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	1982186-1982211	CCGCCAGCTTCTTTGTTGGGGCCCCG	1
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	8.1|2874550|26|CP012119|CRISPRCasFinder	CP012119.2	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	96.15	26	1	0	1	26	2837513	2837488	62745-63027|196418-196505|1182044-1182122|1416894-1417044|1540812-1541005|2457003-2457103|2698711-2698803|2874520-2874605|2917791-2917872	1e-05	39.6	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	2837488-2837513	CGGGGCCCCAACACAGAAGCAGGCGG	1
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	8.1|2874550|26|CP012119|CRISPRCasFinder	CP012119.2	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	92.31	26	2	0	1	26	62744	62719	62745-63027|196418-196505|1182044-1182122|1416894-1417044|1540812-1541005|2457003-2457103|2698711-2698803|2874520-2874605|2917791-2917872	1e-04	36.5	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	62719-62744	CGGGGCCCCAACACAGAGGCTGGTGG	2
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	8.1|2874550|26|CP012119|CRISPRCasFinder	CP012119.2	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	92.31	26	2	0	1	26	2837569	2837544	62745-63027|196418-196505|1182044-1182122|1416894-1417044|1540812-1541005|2457003-2457103|2698711-2698803|2874520-2874605|2917791-2917872	1e-04	36.5	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	2837544-2837569	CGGGGCCCCAACATAGAAGCAGGCGG	2
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	9.1|2917815|34|CP012119|CRISPRCasFinder	CP012119.2	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	100.00	34	0	0	1	34	488977	488944	62745-63027|196418-196505|1182044-1182122|1416894-1417044|1540812-1541005|2457003-2457103|2698711-2698803|2874520-2874605|2917791-2917872	5e-10	55.5	1.0	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	488944-488977	ATGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	0
CP012119	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	9.1|2917815|34|CP012119|CRISPRCasFinder	CP012119.2	Staphylococcus aureus subsp. aureus strain USA300_2014.C01 chromosome, complete genome	100.00	34	0	0	1	34	578136	578169	62745-63027|196418-196505|1182044-1182122|1416894-1417044|1540812-1541005|2457003-2457103|2698711-2698803|2874520-2874605|2917791-2917872	5e-10	55.5	1.0	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	578136-578169	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	0
