assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_001021635.2_ASM102163v2	CP006834	Escherichia coli APEC O2-211 chromosome, complete genome	1	1763607-1763748	1	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PD-DExK	Orphan	GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAG	47	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PD-DExK	NA|62aa|up_4|CP006834.2_1759611_1759797_+,NA	NA|354aa|up_9|CP006834.2_1753070_1754132_-	pfam00419, Fimbrial, Fimbrial protein	NA|244aa|up_8|CP006834.2_1754128_1754860_-	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|817aa|up_7|CP006834.2_1754874_1757325_-	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|189aa|up_6|CP006834.2_1757384_1757951_-	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|428aa|up_5|CP006834.2_1758340_1759624_-	PRK05614, gltA, citrate synthase	NA|62aa|up_4|CP006834.2_1759611_1759797_+	NA	NA|130aa|up_3|CP006834.2_1760332_1760722_+	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit	NA|116aa|up_2|CP006834.2_1760715_1761063_+	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit	NA|589aa|up_1|CP006834.2_1761062_1762829_+	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|239aa|up_0|CP006834.2_1762844_1763561_+	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|934aa|down_0|CP006834.2_1763921_1766723_+	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|406aa|down_1|CP006834.2_1766737_1767955_+	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|389aa|down_2|CP006834.2_1768048_1769215_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|290aa|down_3|CP006834.2_1769214_1770084_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|372aa|down_4|CP006834.2_1770323_1771439_+	sd00006, TPR, Tetratricopeptide repeat	NA|523aa|down_5|CP006834.2_1772767_1774336_+	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA	NA|380aa|down_6|CP006834.2_1774351_1775491_+	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II	NA|38aa|down_7|CP006834.2_1775505_1775619_+	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown]	NA|98aa|down_8|CP006834.2_1775618_1775912_+	PRK10588, PRK10588, hypothetical protein; Provisional	NA|135aa|down_9|CP006834.2_1776061_1776466_+	PRK10800, PRK10800, acyl-CoA thioesterase YbgC; Provisional
GCA_001021635.2_ASM102163v2	CP006834	Escherichia coli APEC O2-211 chromosome, complete genome	2	3379235-3379330	2	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PD-DExK	Orphan	CTCATTGTAGGCCGGATAAAACGC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PD-DExK	NA,NA|68aa|down_4|CP006834.2_3384314_3384518_+,NA|38aa|down_7|CP006834.2_3386292_3386406_-,NA|59aa|down_8|CP006834.2_3386462_3386639_+	NA|343aa|up_9|CP006834.2_3369575_3370604_-	TIGR02272, gentisate_12-dioxygenase, gentisate 1,2-dioxygenase	NA|453aa|up_8|CP006834.2_3370615_3371974_-	TIGR00895, transport_protein, benzoate transport	NA|303aa|up_7|CP006834.2_3372100_3373009_+	TIGR02424, TF_pcaQ, pca operon transcription factor PcaQ	NA|133aa|up_6|CP006834.2_3373139_3373538_+	PRK01821, PRK01821, hypothetical protein; Provisional	NA|232aa|up_5|CP006834.2_3373534_3374230_+	PRK10711, PRK10711, hypothetical protein; Provisional	NA|295aa|up_4|CP006834.2_3374359_3375244_+	PRK09027, PRK09027, cytidine deaminase; Provisional	NA|240aa|up_3|CP006834.2_3375393_3376113_+	PRK10834, PRK10834, outer membrane permeability protein SanA	NA|80aa|up_2|CP006834.2_3376115_3376355_+	pfam10808, DUF2542, Protein of unknown function (DUF2542)	NA|413aa|up_1|CP006834.2_3376673_3377912_+	PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional	NA|412aa|up_0|CP006834.2_3377905_3379141_+	PRK08318, PRK08318, NAD-dependent dihydropyrimidine dehydrogenase subunit PreA	NA|337aa|down_0|CP006834.2_3379399_3380410_-	PRK09478, mglC, galactose/methyl galactoside ABC transporter permease MglC	NA|507aa|down_1|CP006834.2_3380425_3381946_-	PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional	NA|333aa|down_2|CP006834.2_3382006_3383005_-	PRK15395, PRK15395, galactose/glucose ABC transporter substrate-binding protein MglB	NA|347aa|down_3|CP006834.2_3383284_3384325_-	PRK10401, PRK10401, HTH-type transcriptional regulator GalS	NA|68aa|down_4|CP006834.2_3384314_3384518_+	NA	NA|386aa|down_5|CP006834.2_3384466_3385624_-	PRK10835, PRK10835, hypothetical protein; Provisional	NA|223aa|down_6|CP006834.2_3385640_3386309_-	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I	NA|38aa|down_7|CP006834.2_3386292_3386406_-	NA	NA|59aa|down_8|CP006834.2_3386462_3386639_+	NA	NA|279aa|down_9|CP006834.2_3386566_3387403_+	PLN02442, PLN02442, S-formylglutathione hydrolase
GCA_001021635.2_ASM102163v2	CP006834	Escherichia coli APEC O2-211 chromosome, complete genome	3	4004757-4005822	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,csa3,WYL,DEDDh,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	17,17,17	17	TypeI-E	cas3,csa3,WYL,DEDDh,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PD-DExK	NA,NA	NA|254aa|up_9|CP006834.2_3996569_3997331_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|CP006834.2_3997311_3998361_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|CP006834.2_3998357_3998837_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|CP006834.2_3998836_3999547_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|CP006834.2_3999565_3999877_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|CP006834.2_4000070_4000394_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|CP006834.2_4000443_4001049_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|CP006834.2_4001048_4002476_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|CP006834.2_4002477_4003386_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|CP006834.2_4003637_4004675_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|CP006834.2_4005918_4006212_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|CP006834.2_4006208_4007132_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|CP006834.2_4007128_4007779_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|CP006834.2_4007760_4008507_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|CP006834.2_4008517_4009573_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|CP006834.2_4009587_4010124_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|CP006834.2_4010120_4011683_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|886aa|down_7|CP006834.2_4011780_4014438_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|CP006834.2_4014675_4014828_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|CP006834.2_4015091_4015826_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCA_001021635.2_ASM102163v2	CP006834	Escherichia coli APEC O2-211 chromosome, complete genome	4	4031524-4032041	4,2,2,3	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas3	cas3,csa3,WYL,DEDDh,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PD-DExK	Unclear	CGGTTTATCCCCGCTGACGTGGGGAACTC,CGGTTTATCCCCGCTGNCGNGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGACGTGGGGAACTCT	29,29,29,30	0	0	NA	NA	I-E:I-E:I-E:I-E	8,8,7,7	8	Unclear	cas3,csa3,WYL,DEDDh,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PD-DExK	NA,NA	NA|424aa|up_9|CP006834.2_4020169_4021441_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|CP006834.2_4021431_4021692_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|CP006834.2_4021708_4022284_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|CP006834.2_4022430_4023291_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|CP006834.2_4023287_4024067_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_4|CP006834.2_4024044_4025382_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|CP006834.2_4025475_4026930_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|CP006834.2_4026999_4027785_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|CP006834.2_4028103_4029381_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|CP006834.2_4029407_4030886_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|CP006834.2_4032379_4033051_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|CP006834.2_4034278_4035577_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|CP006834.2_4035663_4037301_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_3|CP006834.2_4037528_4038320_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|745aa|down_4|CP006834.2_4038415_4040650_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|403aa|down_5|CP006834.2_4040994_4042203_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|919aa|down_6|CP006834.2_4043393_4046150_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|447aa|down_7|CP006834.2_4046380_4047721_-	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|447aa|down_8|CP006834.2_4047741_4049082_-	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|451aa|down_9|CP006834.2_4049083_4050436_-	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter
