The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP026069	Staphylococcus aureus strain NRS1 chromosome, complete genome	2878504	967849	992793	2878504	integrase	Streptococcus_phage(78.95%)	26	963757:963771	979685:979699
963757:963771	attL	GATTCATCATTTGAC	NA	NA	NA	NA
AUU55605.1|967849_969316_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
AUU55606.1|969340_970882_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
AUU55607.1|970949_972143_-|integrase	site-specific integrase	integrase	A0A0S2MV79	Bacillus_phage	34.2	8.3e-44
AUU55608.1|972169_972370_-	DUF3173 domain-containing protein	NA	NA	NA	NA	NA
AUU55609.1|972867_973098_-	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	78.9	1.0e-27
AUU55610.1|973094_973577_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	68.6	8.5e-48
AUU55611.1|973705_973816_-	hypothetical protein	NA	NA	NA	NA	NA
AUU55612.1|974047_974401_+	XRE family transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	89.7	2.2e-53
AUU55613.1|974743_976663_-	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	97.2	0.0e+00
AUU55614.1|976678_976765_-	tetracycline resistance protein	NA	NA	NA	NA	NA
AUU57482.1|977039_977978_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	56.6	1.1e-83
AUU55615.1|977985_979008_-	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	75.5	2.4e-132
AUU55616.1|979004_981032_-	hypothetical protein	NA	A0A1S5SF30	Streptococcus_phage	65.3	5.1e-195
979685:979699	attR	GATTCATCATTTGAC	NA	NA	NA	NA
AUU55617.1|981028_983482_-	ATP/GTP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	78.9	0.0e+00
AUU55618.1|983465_983861_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	72.6	5.9e-47
AUU55619.1|983932_984571_-	hypothetical protein	NA	NA	NA	NA	NA
AUU55620.1|984626_985127_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	63.0	1.7e-54
AUU55621.1|985187_985967_-	hypothetical protein	NA	NA	NA	NA	NA
AUU55622.1|986008_986230_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	93.2	3.1e-29
AUU55623.1|986226_986517_-	hypothetical protein	NA	NA	NA	NA	NA
AUU55624.1|986513_987698_-	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	68.1	6.3e-161
AUU55625.1|987879_989283_-	DUF87 domain-containing protein	NA	A0A1S5SFB5	Streptococcus_phage	66.5	2.2e-176
AUU55626.1|989304_990078_-	hypothetical protein	NA	NA	NA	NA	NA
AUU55627.1|990087_990465_-	DUF961 domain-containing protein	NA	A0A1S5SF96	Streptococcus_phage	76.4	9.6e-47
AUU55628.1|990485_990800_-	DUF961 domain-containing protein	NA	A0A1S5SF38	Streptococcus_phage	77.7	1.2e-42
AUU55629.1|990999_992793_-	ATP-dependent helicase	NA	E3T5J8	Cafeteria_roenbergensis_virus	23.8	6.9e-26
>prophage 2
CP026069	Staphylococcus aureus strain NRS1 chromosome, complete genome	2878504	1314406	1322227	2878504		Hokovirus(16.67%)	10	NA	NA
AUU55922.1|1314406_1315462_-	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
AUU55923.1|1315461_1316148_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AUU55924.1|1316122_1316596_-	DoxX family protein	NA	NA	NA	NA	NA
AUU55925.1|1316938_1317379_-	hypothetical protein	NA	NA	NA	NA	NA
AUU55926.1|1317658_1318243_-	hypothetical protein	NA	NA	NA	NA	NA
AUU55927.1|1318341_1319055_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
AUU55928.1|1319058_1319478_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
AUU55929.1|1319479_1320148_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
AUU55930.1|1320498_1321092_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
AUU55931.1|1321075_1322227_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.7	6.0e-23
>prophage 3
CP026069	Staphylococcus aureus strain NRS1 chromosome, complete genome	2878504	1334198	1348783	2878504		uncultured_Caudovirales_phage(50.0%)	18	NA	NA
AUU55941.1|1334198_1335257_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
AUU55942.1|1335595_1336138_+	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
AUU55943.1|1336250_1336349_+	hypothetical protein	NA	NA	NA	NA	NA
AUU55944.1|1336524_1336692_+	nitrogen fixation protein NifR	NA	NA	NA	NA	NA
AUU55945.1|1336960_1337878_-	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
AUU55946.1|1337968_1338070_+	hypothetical protein	NA	NA	NA	NA	NA
AUU55947.1|1338147_1339653_-	peptide ABC transporter permease	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
AUU55948.1|1339718_1339964_-	hypothetical protein	NA	NA	NA	NA	NA
AUU55949.1|1339993_1340494_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
AUU55950.1|1340513_1341380_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AUU55951.1|1341764_1342031_+	ribonucleoside-diphosphate reductase	NA	NA	NA	NA	NA
AUU55952.1|1342180_1342579_+	protein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
AUU55953.1|1342541_1344647_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
AUU55954.1|1344764_1345736_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
AUU55955.1|1345916_1346072_+	hypothetical protein	NA	NA	NA	NA	NA
AUU57496.1|1346110_1347082_+	iron ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
AUU55956.1|1347068_1348025_+	iron ABC transporter permease	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
AUU55957.1|1348021_1348783_+	iron ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
>prophage 4
CP026069	Staphylococcus aureus strain NRS1 chromosome, complete genome	2878504	1399918	1468954	2878504	protease,terminase,holin,integrase,capsid,head,coat,tail,portal	Staphylococcus_phage(90.8%)	97	1395888:1395908	1426990:1427010
1395888:1395908	attL	AAAAAGTTGATTTAAATAATA	NA	NA	NA	NA
AUU56005.1|1399918_1402291_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.8	4.3e-92
AUU56006.1|1402312_1402777_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	98.7	1.6e-80
AUU56007.1|1403339_1404446_-|integrase	site-specific integrase	integrase	H0UST3	Bacillus_phage	44.2	5.9e-76
AUU56008.1|1404451_1405099_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AUU56009.1|1405256_1405463_+	hypothetical protein	NA	NA	NA	NA	NA
AUU56010.1|1405498_1405726_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AUU56011.1|1405722_1405869_+	pathogenicity island protein	NA	NA	NA	NA	NA
AUU56012.1|1405861_1406071_+	pathogenicity island protein	NA	Q4ZE76	Staphylococcus_phage	92.8	2.2e-29
AUU56013.1|1406073_1406391_+	DUF1474 domain-containing protein	NA	Q4ZE75	Staphylococcus_phage	48.1	1.2e-18
AUU56014.1|1406457_1407327_+	mobile element-associated protein	NA	A0A1W6JQL5	Staphylococcus_phage	96.9	3.2e-162
AUU56015.1|1407343_1408813_+	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	99.6	3.4e-289
AUU56016.1|1409098_1409461_+	pathogenicity island protein	NA	A0A1W6JQD5	Staphylococcus_phage	98.3	5.8e-65
AUU56017.1|1409462_1409747_+	pathogenicity island protein	NA	A0A1W6JQE4	Staphylococcus_phage	100.0	1.2e-49
AUU56018.1|1409743_1410385_+	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	87.8	2.3e-104
AUU56019.1|1410834_1411176_+	pathogenicity island protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.4e-57
AUU56020.1|1411187_1411766_+	pathogenicity island protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.9	4.8e-29
AUU56021.1|1411783_1412002_+	hypothetical protein	NA	NA	NA	NA	NA
AUU56022.1|1412052_1412580_+|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	97.1	3.5e-87
AUU56023.1|1412582_1412924_+	pathogenicity island protein	NA	A0A1W6JQM3	Staphylococcus_phage	99.1	1.4e-57
AUU56024.1|1412920_1413490_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.4	7.9e-101
AUU56025.1|1413644_1414349_-	toxin	NA	NA	NA	NA	NA
AUU56026.1|1415227_1415788_-	hypothetical protein	NA	Q4ZBG8	Staphylococcus_virus	68.1	5.4e-62
AUU56027.1|1416574_1417375_+	enterotoxin	NA	A0A097PAT7	Streptococcus_pyogenes_phage	47.5	6.1e-51
AUU56028.1|1417543_1418266_-	exotoxin	NA	A0A1X9H080	Staphylococcus_phage	34.9	2.1e-26
AUU56029.1|1419282_1420590_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
AUU56030.1|1420897_1422100_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AUU56031.1|1422535_1423591_+	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.6	7.4e-36
AUU56032.1|1423612_1424629_+	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	6.7e-26
AUU56033.1|1424866_1425691_-	sphingomyelin phosphodiesterase	NA	A0A1P8L6H7	Staphylococcus_phage	99.6	5.7e-161
AUU56034.1|1425747_1426785_-|integrase	site-specific integrase	integrase	A0EWV2	Staphylococcus_phage	100.0	9.1e-180
AUU56035.1|1426843_1427308_-	hypothetical protein	NA	A0EWV3	Staphylococcus_phage	100.0	1.1e-28
1426990:1427010	attR	TATTATTTAAATCAACTTTTT	NA	NA	NA	NA
AUU56036.1|1427407_1427590_-	hypothetical protein	NA	M9NSW6	Staphylococcus_phage	100.0	4.1e-27
AUU56037.1|1427634_1428492_-	restriction endonuclease	NA	R9QTP0	Staphylococcus_phage	99.6	3.5e-161
AUU56038.1|1428503_1429220_-	helix-turn-helix domain-containing protein	NA	R9QTP6	Staphylococcus_phage	100.0	9.2e-131
AUU56039.1|1429383_1429626_+	transcriptional regulator	NA	Q9G038	Staphylococcus_virus	100.0	2.8e-39
AUU56040.1|1429639_1429900_+	transcriptional regulator	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
AUU56041.1|1429923_1430463_-	hypothetical protein	NA	A7TW92	Staphylococcus_phage	100.0	1.7e-97
AUU56042.1|1430519_1431275_+	oxidoreductase	NA	A0A1P8L6G2	Staphylococcus_phage	100.0	3.3e-139
AUU56043.1|1431290_1431488_+	hypothetical protein	NA	A0A1W6JPV3	Staphylococcus_phage	100.0	1.2e-24
AUU56044.1|1431518_1431659_+	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
AUU56045.1|1431673_1432306_-	hypothetical protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
AUU56046.1|1432360_1432681_+	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
AUU56047.1|1432677_1432839_+	DUF1270 domain-containing protein	NA	C8CGY5	Staphylococcus_phage	88.7	2.0e-17
AUU56048.1|1432928_1433231_+	hypothetical protein	NA	A0A0F6N3N3	Staphylococcus_phage	62.0	8.0e-28
AUU56049.1|1433235_1433496_+	DUF1108 domain-containing protein	NA	A0A2I6PEM2	Staphylococcus_phage	93.0	1.2e-40
AUU56050.1|1433504_1433768_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
AUU56051.1|1433776_1435720_+	ATPase	NA	A0A2I6PDH3	Staphylococcus_phage	98.0	0.0e+00
AUU56052.1|1435721_1436642_+	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
AUU56053.1|1436722_1437340_+	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	100.0	9.1e-87
AUU56054.1|1437340_1437811_+	Single-stranded DNA-binding protein 1	NA	A0EWX3	Staphylococcus_phage	99.4	7.4e-81
AUU56055.1|1437840_1438734_+	DnaD domain protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
AUU56056.1|1438740_1438959_+	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
AUU56057.1|1438967_1439372_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A0H3U2W2	Staphylococcus_phage	100.0	1.4e-72
AUU56058.1|1439384_1439753_+	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
AUU56059.1|1439756_1439999_+	hypothetical protein	NA	A0A0H3U4B0	Staphylococcus_phage	98.8	1.6e-39
AUU56060.1|1440007_1440379_+	acetyltransferase	NA	A0ZS31	Staphylococcus_virus	96.7	3.6e-62
AUU56061.1|1440371_1440608_+	DUF1024 domain-containing protein	NA	A0A0H3U313	Staphylococcus_phage	100.0	5.3e-35
AUU56062.1|1440597_1440840_+	hypothetical protein	NA	A0A2I6PF40	Staphylococcus_phage	100.0	3.7e-36
AUU56063.1|1440832_1441366_+	dUTP pyrophosphatase	NA	A0A0H3U2T1	Staphylococcus_phage	100.0	1.6e-95
AUU56064.1|1441402_1441576_+	hypothetical protein	NA	S4SVD5	Staphylococcus_phage	100.0	3.6e-25
AUU56065.1|1441592_1441799_+	DUF1381 domain-containing protein	NA	S4V684	Staphylococcus_phage	82.4	2.8e-24
AUU57497.1|1441946_1442147_+	hypothetical protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
AUU56066.1|1442174_1442591_+	transcriptional regulator	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
AUU56067.1|1442822_1443122_+	HNH endonuclease	NA	G4KNP8	Staphylococcus_phage	100.0	4.6e-52
AUU56068.1|1443251_1443596_+	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
AUU56069.1|1443592_1445254_+|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
AUU56070.1|1445269_1446457_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
AUU56071.1|1446440_1447178_+|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
AUU56072.1|1447201_1448347_+|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
AUU56073.1|1448366_1448651_+	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
AUU56074.1|1448640_1448925_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
AUU56075.1|1448908_1449271_+|head,tail	phage head-tail adapter protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
AUU56076.1|1449267_1449672_+	hypothetical protein	NA	G4KNQ5	Staphylococcus_phage	99.3	2.1e-68
AUU56077.1|1449668_1450076_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
AUU56078.1|1450076_1450721_+|tail	phage tail protein	tail	W5R9H4	Staphylococcus_phage	100.0	6.5e-120
AUU56079.1|1450762_1450987_+	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	98.6	8.8e-32
AUU56080.1|1451036_1451387_+	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
AUU56081.1|1451631_1456161_+|tail	phage tail tape measure protein	tail	A0A1X9H084	Staphylococcus_phage	100.0	0.0e+00
AUU56082.1|1456157_1457642_+|tail	phage tail protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
AUU56083.1|1457657_1461440_+	hypothetical protein	NA	A0A1X9H096	Staphylococcus_phage	99.5	0.0e+00
AUU56084.1|1461432_1461585_+	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
AUU56085.1|1461630_1461918_+	hypothetical protein	NA	A0A1X9H0N7	Staphylococcus_phage	100.0	7.6e-44
AUU56086.1|1461973_1462348_+	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
AUU56087.1|1462720_1463494_+	enterotoxin	NA	A0A1X9H080	Staphylococcus_phage	100.0	1.1e-145
AUU57498.1|1463602_1463779_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
AUU56088.1|1463831_1463939_-	hypothetical protein	NA	NA	NA	NA	NA
AUU56089.1|1463990_1464245_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
AUU56090.1|1464256_1464988_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	99.2	1.8e-145
AUU56091.1|1465202_1465694_+	staphylokinase	NA	A0A1W6JQ12	Staphylococcus_phage	99.4	4.7e-86
AUU56092.1|1466140_1466296_-	amidase	NA	NA	NA	NA	NA
AUU56093.1|1466222_1466477_+	amidase	NA	Q4ZCK0	Staphylococcus_virus	93.0	8.0e-13
AUU56094.1|1466383_1466680_+	peptidoglycan hydrolase	NA	A0A1P8L6B4	Staphylococcus_phage	95.9	1.6e-49
AUU56095.1|1467190_1467541_+	inhibitor	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
AUU56096.1|1467592_1467853_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
AUU56097.1|1467831_1468140_-	hypothetical protein	NA	M9NTD8	Staphylococcus_phage	100.0	3.2e-40
AUU56098.1|1468163_1468343_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	98.3	1.4e-24
AUU56099.1|1468714_1468954_-	phospholipase	NA	A0A1P8L6A7	Staphylococcus_phage	100.0	2.0e-26
>prophage 5
CP026069	Staphylococcus aureus strain NRS1 chromosome, complete genome	2878504	1557937	1653887	2878504	transposase,tRNA,protease	Staphylococcus_phage(88.46%)	100	NA	NA
AUU56182.1|1557937_1559257_-|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
AUU56183.1|1559840_1560902_+	PTS transporter subunit IIC	NA	NA	NA	NA	NA
AUU56184.1|1561159_1562617_+	glutamate ABC transporter permease	NA	NA	NA	NA	NA
AUU56185.1|1562603_1563332_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
AUU56186.1|1563467_1564610_+	epoxyqueuosine reductase	NA	NA	NA	NA	NA
AUU56187.1|1564614_1565085_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
AUU56188.1|1565243_1565843_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA	NA
AUU56189.1|1565867_1566020_+	hypothetical protein	NA	NA	NA	NA	NA
AUU56190.1|1566567_1566963_+	hypothetical protein	NA	NA	NA	NA	NA
AUU56191.1|1567158_1568544_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AUU56192.1|1568996_1569818_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
AUU56193.1|1569980_1571093_+	histidine kinase	NA	NA	NA	NA	NA
AUU56194.1|1571114_1571738_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AUU56195.1|1572093_1572558_+	transcriptional regulator	NA	NA	NA	NA	NA
AUU56196.1|1572736_1573861_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AUU56197.1|1573929_1574274_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
AUU56198.1|1574812_1574911_+	hypothetical protein	NA	NA	NA	NA	NA
AUU56199.1|1575201_1576398_+	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
AUU56200.1|1576387_1579324_+	DNA repair protein Rad50	NA	NA	NA	NA	NA
AUU56201.1|1579320_1580262_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
AUU56202.1|1580382_1581345_-	foldase	NA	NA	NA	NA	NA
AUU56203.1|1581549_1582107_-	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
AUU56204.1|1582841_1583207_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
AUU56205.1|1583348_1583771_-	HIT family protein	NA	NA	NA	NA	NA
AUU56206.1|1583904_1584645_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
AUU56207.1|1584637_1585861_+	multidrug ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AUU56208.1|1585984_1586488_-	signal transduction protein TRAP	NA	NA	NA	NA	NA
AUU56209.1|1586650_1586761_+	hypothetical protein	NA	NA	NA	NA	NA
AUU56210.1|1586750_1587788_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
AUU56211.1|1587845_1588769_+	ferrochelatase	NA	NA	NA	NA	NA
AUU56212.1|1588792_1590193_+	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
AUU56213.1|1590194_1590422_-	hypothetical protein	NA	NA	NA	NA	NA
AUU56214.1|1590515_1591070_+	serine hydrolase family protein	NA	NA	NA	NA	NA
AUU56215.1|1592447_1593212_+	exotoxin	NA	A0A1X9H080	Staphylococcus_phage	37.1	2.3e-31
AUU56216.1|1593492_1594212_+	exotoxin	NA	A0A1X9H080	Staphylococcus_phage	35.8	2.3e-25
AUU56217.1|1594246_1594975_+	exotoxin	NA	A0A1X9H080	Staphylococcus_phage	39.2	1.1e-27
AUU56218.1|1595128_1595530_+	enterotoxin	NA	A0A097PAT7	Streptococcus_pyogenes_phage	37.9	1.5e-10
AUU56219.1|1595504_1595900_+	enterotoxin	NA	A0A097PAT7	Streptococcus_pyogenes_phage	50.4	1.5e-26
AUU56220.1|1595938_1596694_+	exotoxin	NA	A0A075M4C7	Staphylococcus_phage	41.4	6.0e-40
AUU56221.1|1596976_1597753_+	enterotoxin	NA	NA	NA	NA	NA
AUU56222.1|1597970_1598156_-	hypothetical protein	NA	NA	NA	NA	NA
AUU56223.1|1598304_1599081_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
AUU56224.1|1599101_1599338_-	hypothetical protein	NA	NA	NA	NA	NA
AUU56225.1|1599415_1599910_-	hypothetical protein	NA	NA	NA	NA	NA
AUU56226.1|1600743_1601532_-	hypothetical protein	NA	A0A2H4PQI0	Staphylococcus_phage	98.5	3.6e-144
AUU56227.1|1602895_1603831_+	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
AUU56228.1|1603832_1604816_+	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.4	1.8e-185
AUU56229.1|1605185_1605977_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
AUU56230.1|1605981_1606455_-	hypothetical protein	NA	NA	NA	NA	NA
AUU56231.1|1606710_1606929_+	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	80.6	2.0e-25
AUU56232.1|1607401_1607983_-	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	64.8	9.6e-54
AUU56233.1|1608291_1608510_+	hypothetical protein	NA	NA	NA	NA	NA
AUU56234.1|1608945_1609653_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	97.0	7.9e-127
AUU56235.1|1609777_1610500_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	98.3	3.5e-130
AUU56236.1|1610557_1611277_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	1.3e-129
AUU56237.1|1611397_1612117_+|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
AUU56238.1|1612065_1612173_-	hypothetical protein	NA	NA	NA	NA	NA
AUU56239.1|1612274_1612994_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.9e-131
AUU56240.1|1613056_1613191_+	hypothetical protein	NA	NA	NA	NA	NA
AUU56241.1|1613171_1614911_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	2.4e-289
AUU56242.1|1614903_1616133_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	64.7	6.8e-134
AUU56243.1|1617208_1617310_-	hypothetical protein	NA	NA	NA	NA	NA
AUU56244.1|1618882_1619455_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	2.3e-23
AUU56245.1|1619555_1619897_-	DUF3969 domain-containing protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	1.1e-54
AUU56246.1|1619937_1620564_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	79.8	3.1e-74
AUU56247.1|1620638_1621634_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.9	2.6e-67
AUU56248.1|1621714_1622365_-	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	94.0	2.9e-51
AUU57503.1|1622667_1623123_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	3.6e-80
AUU56249.1|1623281_1624760_+	2-succinylbenzoate-CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	2.8e-283
AUU56250.1|1624764_1625766_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.3	5.3e-185
AUU56251.1|1625762_1626020_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
AUU56252.1|1626085_1626559_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
AUU57504.1|1626563_1627310_+	dipeptidyl aminopeptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.4e-142
AUU56253.1|1627687_1629280_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
AUU56254.1|1629651_1630848_+	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
AUU56255.1|1630969_1631878_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
AUU56256.1|1632089_1632923_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
AUU56257.1|1634919_1635273_-	camphor resistance protein CrcB	NA	A0A2H4PQQ7	Staphylococcus_phage	94.0	3.8e-21
AUU56258.1|1635269_1635635_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
AUU56259.1|1635890_1636193_-	hypothetical protein	NA	NA	NA	NA	NA
AUU56260.1|1636452_1637166_+	transaldolase	NA	M1PR54	Cyanophage	35.3	9.4e-19
AUU56261.1|1637605_1638241_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AUU56262.1|1638536_1638980_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
AUU56263.1|1638966_1639410_-	competence protein ComK	NA	NA	NA	NA	NA
AUU56264.1|1639522_1639993_-	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
AUU56265.1|1640191_1640416_+	hypothetical protein	NA	NA	NA	NA	NA
AUU56266.1|1640691_1641546_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	1.3e-38
AUU56267.1|1641632_1642925_-	arsenical efflux pump membrane protein ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
AUU56268.1|1642924_1643239_-	ArsR family transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
AUU56269.1|1643761_1645264_+	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
AUU57505.1|1645756_1646788_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	4.0e-196
AUU56270.1|1646794_1647427_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	5.5e-111
AUU56271.1|1647437_1648619_+	riboflavin biosynthesis protein RibBA	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	5.6e-226
AUU56272.1|1648631_1649096_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
AUU56273.1|1649217_1650219_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	2.6e-184
AUU56274.1|1650330_1650450_+	hypothetical protein	NA	NA	NA	NA	NA
AUU56275.1|1650452_1651280_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AUU56276.1|1651849_1652251_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AUU56277.1|1652373_1652937_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
AUU56278.1|1652933_1653887_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
>prophage 6
CP026069	Staphylococcus aureus strain NRS1 chromosome, complete genome	2878504	1736898	1795108	2878504	transposase,tRNA,protease	Staphylococcus_phage(15.38%)	57	NA	NA
AUU56342.1|1736898_1738218_-|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
AUU56343.1|1738457_1739426_+	ATP-dependent 6-phosphofructokinase	NA	NA	NA	NA	NA
AUU56344.1|1739447_1741205_+	pyruvate kinase	NA	A0A2H4PQU5	Staphylococcus_phage	100.0	2.6e-41
AUU56345.1|1741552_1742914_-	amino acid permease	NA	NA	NA	NA	NA
AUU56346.1|1743261_1744383_+	citrate synthase	NA	NA	NA	NA	NA
AUU56347.1|1744431_1745700_+	isocitrate dehydrogenase (NADP(+))	NA	NA	NA	NA	NA
AUU56348.1|1745919_1746138_-	hypothetical protein	NA	NA	NA	NA	NA
AUU56349.1|1746089_1746794_+	DNA-binding response regulator	NA	Q6XM27	Feldmannia_irregularis_virus	28.7	1.6e-07
AUU57508.1|1746793_1748455_+	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	39.4	5.8e-35
AUU56350.1|1748953_1750441_+	hypothetical protein	NA	NA	NA	NA	NA
AUU56351.1|1750734_1753365_+	DNA polymerase I	NA	A8E2B3	Enterococcus_phage	33.0	6.1e-47
AUU56352.1|1753380_1754253_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	G3MA33	Bacillus_virus	39.1	2.6e-42
AUU56353.1|1754268_1754892_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
AUU56354.1|1755061_1756087_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AUU56355.1|1756297_1756768_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
AUU56356.1|1756768_1758169_+	helicase DnaB	NA	NA	NA	NA	NA
AUU56357.1|1758168_1759089_+	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	29.4	8.1e-31
AUU56358.1|1759181_1759304_+	hypothetical protein	NA	NA	NA	NA	NA
AUU56359.1|1759501_1761439_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	35.8	5.0e-115
AUU56360.1|1761864_1763358_+	amino acid permease	NA	NA	NA	NA	NA
AUU57509.1|1763586_1764114_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.1	4.1e-11
AUU56361.1|1764142_1764343_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
AUU56362.1|1764389_1764746_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
AUU56363.1|1764887_1765496_+	NUDIX domain-containing protein	NA	A0A060AB76	Staphylococcus_phage	35.9	6.6e-21
AUU56364.1|1765514_1766444_+	hypothetical protein	NA	NA	NA	NA	NA
AUU56365.1|1766448_1766559_+	hypothetical protein	NA	NA	NA	NA	NA
AUU56366.1|1766606_1767908_+	trigger factor	NA	NA	NA	NA	NA
AUU56367.1|1768058_1769321_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	62.0	5.0e-140
AUU56368.1|1769474_1770065_+	GTP-binding protein	NA	NA	NA	NA	NA
AUU56369.1|1770281_1771628_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
AUU56370.1|1771649_1772465_+	cytochrome C assembly protein	NA	NA	NA	NA	NA
AUU56371.1|1772506_1773433_+	hydroxymethylbilane synthase	NA	NA	NA	NA	NA
AUU56372.1|1773454_1774123_+	uroporphyrinogen III synthase	NA	NA	NA	NA	NA
AUU56373.1|1774125_1775100_+	delta-aminolevulinic acid dehydratase	NA	NA	NA	NA	NA
AUU56374.1|1775147_1776434_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
AUU56375.1|1776494_1776596_+	hypothetical protein	NA	NA	NA	NA	NA
AUU56376.1|1776629_1777703_+	aminopeptidase	NA	NA	NA	NA	NA
AUU56377.1|1777925_1778486_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AUU56378.1|1778888_1781519_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.7	2.8e-153
AUU56379.1|1781531_1782803_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AUU56380.1|1782860_1782971_-	hypothetical protein	NA	NA	NA	NA	NA
AUU56381.1|1783072_1783780_+	prepilin peptidase	NA	NA	NA	NA	NA
AUU56382.1|1783776_1784331_+	JAB domain-containing protein	NA	NA	NA	NA	NA
AUU56383.1|1784449_1785535_+|transposase	transposase	transposase	A0A0A8WIF9	Clostridium_phage	28.3	4.5e-12
AUU56384.1|1785531_1787424_+|transposase	transposase	transposase	NA	NA	NA	NA
AUU56385.1|1787430_1787808_+|transposase	transposase	transposase	NA	NA	NA	NA
AUU56386.1|1787958_1788741_+	aminoglycoside nucleotidyltransferase ANT(9)-Ia	NA	NA	NA	NA	NA
AUU56387.1|1788866_1789598_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	NA	E4ZFQ0	Streptococcus_phage	47.5	1.9e-51
AUU56388.1|1790131_1790794_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AUU56389.1|1791242_1791527_+	hypothetical protein	NA	NA	NA	NA	NA
AUU56390.1|1791643_1791841_-	hypothetical protein	NA	NA	NA	NA	NA
AUU56391.1|1792000_1792474_+	DUF4930 domain-containing protein	NA	NA	NA	NA	NA
AUU56392.1|1792547_1792667_+	hypothetical protein	NA	NA	NA	NA	NA
AUU56393.1|1792865_1793708_+	rod shape-determining protein MreC	NA	NA	NA	NA	NA
AUU56394.1|1793707_1794238_+	rod shape-determining protein MreD	NA	NA	NA	NA	NA
AUU56395.1|1794473_1794782_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
AUU56396.1|1794787_1795108_+|protease	ribosomal-processing cysteine protease Prp	protease	NA	NA	NA	NA
>prophage 7
CP026069	Staphylococcus aureus strain NRS1 chromosome, complete genome	2878504	1798165	1807208	2878504	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
AUU56401.1|1798165_1799170_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
AUU56402.1|1799171_1800197_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AUU56403.1|1800219_1801359_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
AUU56404.1|1801377_1801638_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
AUU56405.1|1801912_1804192_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
AUU56406.1|1804394_1806668_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	8.1e-64
AUU56407.1|1806689_1807208_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 8
CP026069	Staphylococcus aureus strain NRS1 chromosome, complete genome	2878504	2425468	2433941	2878504		Synechococcus_phage(33.33%)	9	NA	NA
AUU56979.1|2425468_2426035_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
AUU56980.1|2426037_2427066_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
AUU56981.1|2427058_2428543_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.9e-45
AUU56982.1|2428521_2430711_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
AUU56983.1|2430703_2431375_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
AUU56984.1|2431376_2431640_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AUU56985.1|2431639_2432344_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
AUU56986.1|2432347_2433472_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AUU56987.1|2433458_2433941_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
>prophage 9
CP026069	Staphylococcus aureus strain NRS1 chromosome, complete genome	2878504	2452869	2470153	2878504	holin,bacteriocin,protease	Staphylococcus_phage(33.33%)	23	NA	NA
AUU57003.1|2452869_2453898_+|protease	serine protease	protease	A0A2H4PQP7	Staphylococcus_phage	32.3	6.3e-16
AUU57004.1|2453979_2455161_+|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
AUU57005.1|2455198_2455528_+	staphostatin B	NA	NA	NA	NA	NA
AUU57006.1|2455765_2456587_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
AUU57007.1|2456579_2457383_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
AUU57008.1|2457369_2459043_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase	NA	NA	NA	NA	NA
AUU57009.1|2459029_2460241_-	isochorismate synthase	NA	NA	NA	NA	NA
AUU57010.1|2460317_2460422_-	hypothetical protein	NA	NA	NA	NA	NA
AUU57011.1|2460572_2461511_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
AUU57012.1|2461562_2462114_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AUU57013.1|2462203_2462494_+	NINE protein	NA	A0A060AN66	Enterococcus_phage	38.0	7.5e-07
AUU57014.1|2462557_2462689_+	hypothetical protein	NA	NA	NA	NA	NA
AUU57015.1|2462734_2463694_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AUU57016.1|2464181_2464538_+	DoxX family protein	NA	NA	NA	NA	NA
AUU57017.1|2464626_2464764_-	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
AUU57018.1|2464904_2465195_+	hypothetical protein	NA	NA	NA	NA	NA
AUU57019.1|2465282_2465924_-|bacteriocin	bacteriocin ABC transporter ATP-binding protein	bacteriocin	G9BWD6	Planktothrix_phage	33.0	1.7e-19
AUU57020.1|2465920_2466241_-	hypothetical protein	NA	NA	NA	NA	NA
AUU57021.1|2466243_2468208_-	DUF1430 domain-containing protein	NA	NA	NA	NA	NA
AUU57532.1|2468251_2468524_-|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
AUU57022.1|2468533_2468635_-	hypothetical protein	NA	NA	NA	NA	NA
AUU57533.1|2469173_2469251_-|holin	putative holin-like toxin	holin	NA	NA	NA	NA
AUU57023.1|2469550_2470153_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 10
CP026069	Staphylococcus aureus strain NRS1 chromosome, complete genome	2878504	2580319	2637632	2878504	terminase,holin,transposase,integrase,head,tail,portal	Staphylococcus_phage(78.57%)	85	2626805:2626821	2635805:2635821
AUU57124.1|2580319_2581639_-|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
AUU57125.1|2581844_2582228_-	DUF1027 domain-containing protein	NA	NA	NA	NA	NA
AUU57126.1|2582357_2583275_-	lipoyl synthase	NA	NA	NA	NA	NA
AUU57127.1|2583358_2584678_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
AUU57128.1|2584704_2585532_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
AUU57129.1|2585544_2586393_-	DUF72 domain-containing protein	NA	NA	NA	NA	NA
AUU57130.1|2586440_2586524_-	hypothetical protein	NA	NA	NA	NA	NA
AUU57131.1|2586777_2587845_-	nitronate monooxygenase	NA	NA	NA	NA	NA
AUU57132.1|2587858_2588899_-	HlyC/CorC family transporter	NA	NA	NA	NA	NA
AUU57133.1|2589263_2589578_+	hypothetical protein	NA	NA	NA	NA	NA
AUU57134.1|2589676_2589907_+	hypothetical protein	NA	NA	NA	NA	NA
AUU57135.1|2590243_2590675_-	hypothetical protein	NA	NA	NA	NA	NA
AUU57136.1|2590667_2591300_-	DUF4065 domain-containing protein	NA	NA	NA	NA	NA
AUU57137.1|2591632_2591833_-	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	100.0	3.7e-29
AUU57138.1|2591819_2591930_-	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	97.2	4.9e-12
AUU57139.1|2592000_2592153_-	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
AUU57140.1|2592395_2593841_-	CHAP domain-containing protein	NA	Q08JW9	Staphylococcus_phage	99.8	1.8e-295
AUU57141.1|2593821_2594259_-|holin	phage holin	holin	Q8SDS8	Staphylococcus_phage	99.3	6.9e-73
AUU57142.1|2594314_2594710_-	hypothetical protein	NA	A0A0E3XBL9	Staphylococcus_phage	97.7	1.4e-67
AUU57143.1|2594715_2595954_-	DUF2479 domain-containing protein	NA	A0A0F6N3G7	Staphylococcus_phage	98.1	2.7e-207
AUU57144.1|2595966_2597865_-	CHAP domain-containing protein	NA	Q8SDT1	Staphylococcus_phage	99.8	0.0e+00
AUU57145.1|2598001_2598301_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
AUU57146.1|2598341_2598515_-	XkdX family protein	NA	A0A0F6N3L7	Staphylococcus_phage	100.0	6.6e-27
AUU57147.1|2598518_2598896_-	DUF2977 domain-containing protein	NA	Q9FZY7	Staphylococcus_virus	99.2	3.4e-60
AUU57148.1|2598895_2600719_-	DUF2479 domain-containing protein	NA	W5R8J5	Staphylococcus_phage	99.2	7.4e-294
AUU57149.1|2600718_2602629_-	hypothetical protein	NA	A1KX41	Staphylococcus_virus	99.8	0.0e+00
AUU57150.1|2602643_2604545_-	peptidase	NA	Q4ZDD8	Staphylococcus_virus	100.0	0.0e+00
AUU57151.1|2604553_2605501_-|tail	phage tail family protein	tail	S4V688	Staphylococcus_phage	100.0	3.6e-183
AUU57152.1|2605513_2608978_-	hypothetical protein	NA	S4V989	Staphylococcus_phage	100.0	5.8e-271
AUU57153.1|2608994_2609339_-	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
AUU57154.1|2609368_2609734_-|tail	phage tail protein	tail	S4V9M6	Staphylococcus_phage	100.0	2.8e-59
AUU57155.1|2609795_2610377_-|tail	phage major tail protein, TP901-1 family	tail	A0A0F6N3L8	Staphylococcus_phage	100.0	4.9e-106
AUU57156.1|2610395_2610779_-	hypothetical protein	NA	A0A0F6N3L1	Staphylococcus_phage	100.0	1.5e-68
AUU57157.1|2610790_2611138_-	hypothetical protein	NA	S4V987	Staphylococcus_phage	100.0	3.1e-60
AUU57158.1|2611137_2611440_-	hypothetical protein	NA	S4V7K8	Staphylococcus_phage	100.0	1.1e-50
AUU57159.1|2611436_2611769_-|head,tail	phage head-tail adapter protein	head,tail	A0A0F6N3F4	Staphylococcus_phage	100.0	5.5e-54
AUU57160.1|2611777_2612065_-	hypothetical protein	NA	S4V6D9	Staphylococcus_phage	100.0	4.7e-46
AUU57161.1|2613073_2613688_-	DUF4355 domain-containing protein	NA	A0EWS9	Staphylococcus_virus	100.0	4.9e-40
AUU57162.1|2613822_2613993_-	hypothetical protein	NA	Q4ZDF2	Staphylococcus_virus	100.0	3.3e-23
AUU57163.1|2614065_2615061_-|head	phage head morphogenesis protein	head	E0Y3K7	Staphylococcus_virus	100.0	3.4e-184
AUU57164.1|2615067_2616603_-|portal	phage portal protein	portal	Q4ZDV9	Staphylococcus_virus	99.4	9.3e-290
AUU57165.1|2616613_2617891_-|terminase	PBSX family phage terminase large subunit	terminase	A0EWS5	Staphylococcus_virus	99.8	5.1e-249
AUU57166.1|2617877_2618318_-|terminase	terminase small subunit	terminase	I1W650	Staphylococcus_phage	99.3	2.4e-73
AUU57167.1|2618504_2618924_-	transcriptional regulator	NA	I1W651	Staphylococcus_phage	100.0	8.1e-71
AUU57168.1|2618938_2619085_-	hypothetical protein	NA	Q4ZDN7	Staphylococcus_virus	100.0	1.3e-15
AUU57169.1|2619085_2619259_-	transcriptional regulator	NA	S4SVE4	Staphylococcus_phage	98.2	1.1e-21
AUU57170.1|2619258_2619651_-	hypothetical protein	NA	A0A2I6PDC1	Staphylococcus_phage	99.2	1.8e-64
AUU57171.1|2619634_2619871_-	hypothetical protein	NA	S4SWB7	Staphylococcus_phage	100.0	1.6e-36
AUU57172.1|2619863_2620067_-	hypothetical protein	NA	A0A0N9BAX5	Staphylococcus_phage	100.0	5.2e-31
AUU57173.1|2620063_2620258_-	hypothetical protein	NA	S4SX95	Staphylococcus_phage	100.0	7.9e-29
AUU57174.1|2620254_2620461_-	DUF1381 domain-containing protein	NA	A0A1W6JPM8	Staphylococcus_phage	100.0	4.9e-21
AUU57175.1|2620497_2621034_-	dUTPase	NA	A0A1P8L6E0	Staphylococcus_phage	100.0	2.1e-95
AUU57176.1|2621026_2621275_-	DUF1024 domain-containing protein	NA	A0A2H4PQK1	Staphylococcus_phage	93.9	1.7e-36
AUU57177.1|2621289_2621538_-	hypothetical protein	NA	S4V683	Staphylococcus_phage	97.6	8.8e-41
AUU57178.1|2621538_2621910_-	hypothetical protein	NA	A7TWN6	Staphylococcus_phage	95.9	4.0e-53
AUU57179.1|2621910_2622096_-	DUF3113 domain-containing protein	NA	W5R8N4	Staphylococcus_phage	100.0	1.4e-27
AUU57180.1|2622100_2622505_-	DUF1064 domain-containing protein	NA	A7TWN5	Staphylococcus_phage	100.0	7.1e-72
AUU57181.1|2622514_2622736_-	hypothetical protein	NA	A0A0H3U2V4	Staphylococcus_phage	100.0	2.2e-35
AUU57182.1|2622748_2622907_-	hypothetical protein	NA	A0A2I6PDX0	Staphylococcus_phage	94.2	1.1e-20
AUU57183.1|2622903_2623689_-	DNA replication protein DnaC	NA	A0A0H4J332	Staphylococcus_phage	100.0	1.9e-145
AUU57184.1|2623701_2624433_-	helix-turn-helix domain-containing protein	NA	A0A1J0MGB2	Staphylococcus_phage	78.8	9.8e-80
AUU57185.1|2624497_2624779_+	hypothetical protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
AUU57186.1|2624918_2625593_-	hypothetical protein	NA	R4IH15	Staphylococcus_phage	97.8	1.5e-127
AUU57187.1|2625593_2626145_-	HNH endonuclease	NA	A0A2H4PQR4	Staphylococcus_phage	98.9	5.1e-105
AUU57188.1|2626155_2626581_-	Single-stranded DNA-binding protein 2	NA	B7T0A5	Staphylococcus_virus	88.7	2.1e-58
2626805:2626821	attL	CGCCGTTGTAAATATAT	NA	NA	NA	NA
AUU57189.1|2627197_2627419_-	DUF2483 domain-containing protein	NA	A7TWM6	Staphylococcus_phage	100.0	3.2e-34
AUU57190.1|2627428_2627689_-	DUF1108 domain-containing protein	NA	C8CGY6	Staphylococcus_phage	100.0	8.9e-44
AUU57191.1|2627693_2627996_-	hypothetical protein	NA	A0A0F6N3N3	Staphylococcus_phage	100.0	1.4e-48
AUU57192.1|2628088_2628250_-	DUF1270 domain-containing protein	NA	A0A0E3XBK7	Staphylococcus_phage	96.2	4.3e-20
AUU57193.1|2628242_2628464_-	hypothetical protein	NA	E0Y3P2	Staphylococcus_virus	100.0	1.5e-31
AUU57194.1|2628534_2629182_+	hypothetical protein	NA	S4V9K2	Staphylococcus_phage	100.0	2.0e-113
AUU57195.1|2629203_2629347_-	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
AUU57196.1|2629386_2629611_-	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
AUU57197.1|2629611_2630391_-	phage antirepressor	NA	M1RZB2	Staphylococcus_phage	92.6	4.1e-132
AUU57198.1|2630447_2630657_+	hypothetical protein	NA	W5R9J5	Staphylococcus_phage	100.0	1.2e-30
AUU57199.1|2630646_2630790_-	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
AUU57200.1|2630878_2631070_-	XRE family transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
AUU57201.1|2631230_2631560_+	XRE family transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
AUU57202.1|2631572_2632037_+	toxin	NA	A0A2I6PEK4	Staphylococcus_phage	94.1	3.6e-80
AUU57203.1|2632068_2633001_+	hypothetical protein	NA	A0EWN8	Staphylococcus_virus	100.0	3.9e-174
AUU57204.1|2632980_2633160_-	excisionase	NA	A0EWN7	Staphylococcus_virus	100.0	8.3e-25
AUU57205.1|2633271_2634321_+|integrase	site-specific integrase	integrase	A1KWY3	Staphylococcus_virus	100.0	1.6e-203
AUU57206.1|2634388_2635786_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
AUU57207.1|2635936_2636401_-	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
2635805:2635821	attR	ATATATTTACAACGGCG	NA	NA	NA	NA
AUU57208.1|2636390_2637632_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.8	8.2e-111
>prophage 11
CP026069	Staphylococcus aureus strain NRS1 chromosome, complete genome	2878504	2671970	2685598	2878504	terminase,coat,protease,integrase	Staphylococcus_phage(66.67%)	20	2670814:2670828	2683591:2683605
2670814:2670828	attL	AACTTTATAAAATCA	NA	NA	NA	NA
AUU57250.1|2671970_2672939_-|protease	CAAX protease	protease	A0A0H4U080	Erysipelothrix_phage	27.3	5.9e-24
AUU57251.1|2673215_2673785_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	98.9	9.3e-102
AUU57252.1|2673781_2674123_-	pathogenicity island protein	NA	A0A1W6JQM3	Staphylococcus_phage	99.1	1.4e-57
AUU57253.1|2674125_2674653_-|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	97.1	3.5e-87
AUU57254.1|2674703_2674922_-	hypothetical protein	NA	NA	NA	NA	NA
AUU57255.1|2674939_2675518_-	pathogenicity island protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.9	4.8e-29
AUU57256.1|2675529_2675871_-	pathogenicity island protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.4e-57
AUU57257.1|2676320_2676962_-	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	93.0	7.2e-111
AUU57258.1|2676958_2677339_-	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	96.8	1.7e-67
AUU57259.1|2677648_2679358_-	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	92.8	1.4e-302
AUU57260.1|2679371_2680241_-	mobile element-associated protein	NA	Q4ZE74	Staphylococcus_phage	96.2	1.5e-164
AUU57261.1|2680305_2680632_-	DUF1474 domain-containing protein	NA	Q4ZE75	Staphylococcus_phage	89.8	1.5e-48
AUU57262.1|2680634_2680844_-	pathogenicity island protein	NA	Q4ZE76	Staphylococcus_phage	94.2	2.9e-29
AUU57263.1|2680836_2680983_-	pathogenicity island protein	NA	NA	NA	NA	NA
AUU57264.1|2680979_2681297_-	helix-turn-helix domain-containing protein	NA	A0A1W6JQE0	Staphylococcus_phage	98.1	9.2e-51
AUU57265.1|2681301_2681520_-	XRE family transcriptional regulator	NA	A0A2H4JB11	uncultured_Caudovirales_phage	66.7	1.3e-19
AUU57266.1|2681692_2682367_+	XRE family transcriptional regulator	NA	A0A2H4JGT9	uncultured_Caudovirales_phage	45.8	1.6e-39
AUU57267.1|2682380_2683553_+|integrase	site-specific integrase	integrase	A0A1W6JQD3	Staphylococcus_phage	96.2	5.8e-215
AUU57268.1|2683621_2685238_-	molecular chaperone GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
2683591:2683605	attR	AACTTTATAAAATCA	NA	NA	NA	NA
AUU57269.1|2685313_2685598_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
