assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_001019305.2_ASM101930v2	CP026079	Staphylococcus aureus strain NRS70 chromosome, complete genome	1	49673-50003	1	CRT	no	cas3	cas3,WYL,RT,csa3,DEDDh,DinG	Unclear	TTCTACAGNCAATGCNAGTTGGGGTGTGGGCCCCAACA	38	5	34	49711-49730|49711-49730|49711-49730|49711-49730|49711-49730|49711-49730|49711-49730|49711-49730|49711-49730|49711-49730|49711-49730|49711-49730|49711-49730|49711-49730|49711-49730|49711-49730|49711-49730|49711-49730|49711-49730|49711-49730|49769-49789|49769-49789|49828-49848|49828-49848|49887-49906|49887-49906|49887-49906|49945-49965|49945-49965|49945-49965|49945-49965|49945-49965|49945-49965|49945-49965	CP026079.1_97284-97303|CP026079.1_221825-221806|CP026079.1_561752-561733|CP026079.1_684997-684978|CP026079.1_1736102-1736121|CP026079.1_1884131-1884112|CP026079.1_2055032-2055013|CP026079.1_2069531-2069550|CP026079.1_2339498-2339479|CP026079.1_2551129-2551110|CP026079.1_2648150-2648169|CP026079.1_2814138-2814157|CP026079.1_561807-561788|CP026079.1_561862-561843|CP026079.1_1942894-1942875|CP026079.1_2035270-2035289|CP026079.1_2289503-2289522|CP026079.1_2334994-2335013|CP026079.1_2545480-2545461|CP026079.1_2744096-2744115|CP026079.1_49652-49672|CP026079.1_96091-96071|CP026079.1_49652-49672|CP026079.1_96091-96071|CP026079.1_914088-914107|CP026079.1_1726752-1726771|CP026079.1_1791796-1791815|CP026079.1_221767-221747|CP026079.1_1372534-1372554|CP026079.1_1737444-1737464|CP026079.1_1737503-1737523|CP026079.1_2251050-2251070|CP026079.1_2339440-2339420|CP026079.1_2545538-2545518	NA	5	5	Unclear	cas3,WYL,RT,csa3,DEDDh,DinG	NA,NA	NA|254aa|up_9|CP026079.1_37605_38367_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|up_8|CP026079.1_38488_39679_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|up_7|CP026079.1_39817_40828_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|338aa|up_6|CP026079.1_40880_41894_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|210aa|up_5|CP026079.1_42818_43448_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|301aa|up_4|CP026079.1_44150_45053_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_3|CP026079.1_45295_45883_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_2|CP026079.1_46446_47391_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_1|CP026079.1_47501_48497_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_0|CP026079.1_48493_49405_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|down_0|CP026079.1_50349_51285_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|down_1|CP026079.1_51351_52791_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|down_2|CP026079.1_52798_53284_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|down_3|CP026079.1_53291_54131_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|down_4|CP026079.1_54136_55069_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_5|CP026079.1_55732_58579_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_6|CP026079.1_58586_60572_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_7|CP026079.1_60840_61077_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_8|CP026079.1_61073_61724_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_9|CP026079.1_61897_62737_-	COG3942, COG3942, Surface antigen [General function prediction only]
GCA_001019305.2_ASM101930v2	CP026079	Staphylococcus aureus strain NRS70 chromosome, complete genome	2	55328-55406	1	CRISPRCasFinder	no	cas3	cas3,WYL,RT,csa3,DEDDh,DinG	Unclear	AGAATTTCGAAAAGAAATTCTACA	24	1	3	55352-55382|55352-55382|55352-55382	CP026079.1_561780-561750|CP026079.1_561835-561805|CP026079.1_2035123-2035153	NA	1	1	Unclear	cas3,WYL,RT,csa3,DEDDh,DinG	NA,NA|36aa|down_5|CP026079.1_62884_62992_-,NA|35aa|down_7|CP026079.1_64424_64529_-	NA|301aa|up_9|CP026079.1_44150_45053_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_8|CP026079.1_45295_45883_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_7|CP026079.1_46446_47391_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_6|CP026079.1_47501_48497_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_5|CP026079.1_48493_49405_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|up_4|CP026079.1_50349_51285_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|up_3|CP026079.1_51351_52791_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|up_2|CP026079.1_52798_53284_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|up_1|CP026079.1_53291_54131_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|up_0|CP026079.1_54136_55069_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_0|CP026079.1_55732_58579_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_1|CP026079.1_58586_60572_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_2|CP026079.1_60840_61077_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_3|CP026079.1_61073_61724_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_4|CP026079.1_61897_62737_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|36aa|down_5|CP026079.1_62884_62992_-	NA	NA|370aa|down_6|CP026079.1_63145_64256_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|35aa|down_7|CP026079.1_64424_64529_-	NA	NA|844aa|down_8|CP026079.1_64570_67102_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|191aa|down_9|CP026079.1_67515_68088_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]
GCA_001019305.2_ASM101930v2	CP026079	Staphylococcus aureus strain NRS70 chromosome, complete genome	3	445090-445192	2	CRISPRCasFinder	no		cas3,WYL,RT,csa3,DEDDh,DinG	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,RT,csa3,DEDDh,DinG	NA|179aa|up_7|CP026079.1_436708_437245_+,NA|221aa|up_1|CP026079.1_443336_443999_+,NA|86aa|down_1|CP026079.1_446919_447177_+,NA|33aa|down_2|CP026079.1_447387_447486_-,NA|128aa|down_8|CP026079.1_453733_454117_+	NA|91aa|up_9|CP026079.1_434941_435214_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|235aa|up_8|CP026079.1_435612_436317_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|179aa|up_7|CP026079.1_436708_437245_+	NA	NA|514aa|up_6|CP026079.1_437357_438899_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|CP026079.1_438923_440390_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|CP026079.1_440427_441696_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|CP026079.1_441695_442274_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|CP026079.1_442786_443194_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|CP026079.1_443336_443999_+	NA	NA|319aa|up_0|CP026079.1_444116_445073_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|440aa|down_0|CP026079.1_445404_446724_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|86aa|down_1|CP026079.1_446919_447177_+	NA	NA|33aa|down_2|CP026079.1_447387_447486_-	NA	NA|463aa|down_3|CP026079.1_447570_448959_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_4|CP026079.1_449038_449794_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_5|CP026079.1_450285_450855_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_6|CP026079.1_450870_452394_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|209aa|down_7|CP026079.1_452837_453464_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_8|CP026079.1_453733_454117_+	NA	NA|194aa|down_9|CP026079.1_454182_454764_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
GCA_001019305.2_ASM101930v2	CP026079	Staphylococcus aureus strain NRS70 chromosome, complete genome	4	684893-684977	3	CRISPRCasFinder	no		cas3,WYL,RT,csa3,DEDDh,DinG	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	2	684919-684951|684919-684951	CP026079.1_2339362-2339394|CP026079.1_2251128-2251096	NA	1	1	Orphan	cas3,WYL,RT,csa3,DEDDh,DinG	NA|68aa|up_0|CP026079.1_684627_684831_+,NA|402aa|down_9|CP026079.1_694625_695831_-	NA|2392aa|up_9|CP026079.1_669034_676210_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|417aa|up_8|CP026079.1_676656_677907_-	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|342aa|up_7|CP026079.1_678292_679318_-	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|120aa|up_6|CP026079.1_679491_679851_-	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|344aa|up_5|CP026079.1_680067_681099_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|254aa|up_4|CP026079.1_681111_681873_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|324aa|up_3|CP026079.1_681869_682841_-	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|247aa|up_2|CP026079.1_682854_683595_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|171aa|up_1|CP026079.1_683936_684449_-	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|68aa|up_0|CP026079.1_684627_684831_+	NA	NA|320aa|down_0|CP026079.1_685125_686085_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|496aa|down_1|CP026079.1_686731_688219_-	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|128aa|down_2|CP026079.1_688645_689029_+	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|109aa|down_3|CP026079.1_689035_689362_+	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|382aa|down_4|CP026079.1_689426_690572_-	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|421aa|down_5|CP026079.1_690648_691911_-	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|296aa|down_6|CP026079.1_691964_692852_-	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|186aa|down_7|CP026079.1_692851_693409_-	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|402aa|down_8|CP026079.1_693419_694625_-	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|402aa|down_9|CP026079.1_694625_695831_-	NA
GCA_001019305.2_ASM101930v2	CP026079	Staphylococcus aureus strain NRS70 chromosome, complete genome	6	1197157-1197235	4	CRISPRCasFinder	no		cas3,WYL,RT,csa3,DEDDh,DinG	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	1	7	1197180-1197212|1197180-1197212|1197180-1197212|1197180-1197212|1197180-1197212|1197180-1197212|1197180-1197212	CP026079.1_42346-42378|CP026079.1_2813869-2813901|CP026079.1_42402-42434|CP026079.1_42458-42490|CP026079.1_42514-42546|CP026079.1_42570-42602|CP026079.1_1593893-1593861	NA	1	1	Orphan	cas3,WYL,RT,csa3,DEDDh,DinG	NA|220aa|up_4|CP026079.1_1194081_1194741_-,NA|36aa|up_1|CP026079.1_1196730_1196838_+,NA|37aa|up_0|CP026079.1_1196864_1196975_+,NA|48aa|down_2|CP026079.1_1201149_1201293_+	NA|693aa|up_9|CP026079.1_1186556_1188635_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|269aa|up_8|CP026079.1_1190454_1191261_+	TIGR03729, acc_ester, putative phosphoesterase	NA|219aa|up_7|CP026079.1_1191323_1191980_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|158aa|up_6|CP026079.1_1192092_1192566_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_5|CP026079.1_1192688_1193900_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|220aa|up_4|CP026079.1_1194081_1194741_-	NA	NA|381aa|up_3|CP026079.1_1194800_1195943_-	TIGR00045, Glycerate_kinase, glycerate kinase	NA|129aa|up_2|CP026079.1_1196210_1196597_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|36aa|up_1|CP026079.1_1196730_1196838_+	NA	NA|37aa|up_0|CP026079.1_1196864_1196975_+	NA	NA|588aa|down_0|CP026079.1_1197540_1199304_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|578aa|down_1|CP026079.1_1199328_1201062_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|48aa|down_2|CP026079.1_1201149_1201293_+	NA	NA|229aa|down_3|CP026079.1_1201514_1202201_+	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|453aa|down_4|CP026079.1_1202178_1203537_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|down_5|CP026079.1_1203538_1204546_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|down_6|CP026079.1_1204523_1205639_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|down_7|CP026079.1_1205649_1206342_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|down_8|CP026079.1_1206352_1206820_+	pfam06177, QueT, QueT transporter	NA|326aa|down_9|CP026079.1_1206871_1207849_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin
GCA_001019305.2_ASM101930v2	CP026079	Staphylococcus aureus strain NRS70 chromosome, complete genome	7	1361712-1361792	5	CRISPRCasFinder	no		cas3,WYL,RT,csa3,DEDDh,DinG	Orphan	CAAGTTGGCGGGGCCCCAACACAGA	25	1	16	1361737-1361767|1361737-1361767|1361737-1361767|1361737-1361767|1361737-1361767|1361737-1361767|1361737-1361767|1361737-1361767|1361737-1361767|1361737-1361767|1361737-1361767|1361737-1361767|1361737-1361767|1361737-1361767|1361737-1361767|1361737-1361767	CP026079.1_42406-42436|CP026079.1_42462-42492|CP026079.1_42518-42548|CP026079.1_42574-42604|CP026079.1_42350-42380|CP026079.1_221763-221733|CP026079.1_485448-485418|CP026079.1_783434-783464|CP026079.1_1372538-1372568|CP026079.1_1737448-1737478|CP026079.1_2054971-2054941|CP026079.1_2251054-2251084|CP026079.1_2339436-2339406|CP026079.1_2545534-2545504|CP026079.1_2648096-2648126|CP026079.1_2813873-2813903	NA	1	1	Orphan	cas3,WYL,RT,csa3,DEDDh,DinG	NA,NA|62aa|down_0|CP026079.1_1361833_1362019_-,NA|84aa|down_5|CP026079.1_1365158_1365410_-,NA|106aa|down_8|CP026079.1_1370531_1370849_-,NA|55aa|down_9|CP026079.1_1371093_1371258_-	NA|202aa|up_9|CP026079.1_1354604_1355210_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|CP026079.1_1355379_1356384_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|CP026079.1_1356414_1356921_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|CP026079.1_1356922_1357417_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|CP026079.1_1357479_1358739_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|CP026079.1_1358735_1359221_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|CP026079.1_1359234_1359681_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|CP026079.1_1359686_1359920_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|CP026079.1_1359926_1360526_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|CP026079.1_1360545_1361568_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|62aa|down_0|CP026079.1_1361833_1362019_-	NA	NA|117aa|down_1|CP026079.1_1362144_1362495_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|CP026079.1_1362596_1363808_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|CP026079.1_1363800_1364241_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|CP026079.1_1364402_1365167_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|CP026079.1_1365158_1365410_-	NA	NA|422aa|down_6|CP026079.1_1365798_1367064_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|CP026079.1_1367180_1370348_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|CP026079.1_1370531_1370849_-	NA	NA|55aa|down_9|CP026079.1_1371093_1371258_-	NA
GCA_001019305.2_ASM101930v2	CP026079	Staphylococcus aureus strain NRS70 chromosome, complete genome	9	1482010-1482091	7	CRISPRCasFinder	no	csa3	cas3,WYL,RT,csa3,DEDDh,DinG	Type I-A	AAGAAGCCCCTAACAACTAAAGTTG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,RT,csa3,DEDDh,DinG	NA|31aa|up_3|CP026079.1_1480203_1480296_-,NA|53aa|up_2|CP026079.1_1480732_1480891_-,NA|61aa|up_1|CP026079.1_1480955_1481138_+,NA|35aa|up_0|CP026079.1_1481570_1481675_+,NA|126aa|down_2|CP026079.1_1485858_1486236_+,NA|158aa|down_6|CP026079.1_1489437_1489911_-	NA|145aa|up_9|CP026079.1_1471498_1471933_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_8|CP026079.1_1471944_1474077_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_7|CP026079.1_1474111_1475650_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_6|CP026079.1_1476330_1478136_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_5|CP026079.1_1478367_1479150_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_4|CP026079.1_1479217_1480075_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|31aa|up_3|CP026079.1_1480203_1480296_-	NA	NA|53aa|up_2|CP026079.1_1480732_1480891_-	NA	NA|61aa|up_1|CP026079.1_1480955_1481138_+	NA	NA|35aa|up_0|CP026079.1_1481570_1481675_+	NA	NA|362aa|down_0|CP026079.1_1482877_1483963_+	cd01186, INT_tnpA_C_Tn554, Putative Transposase A from transposon Tn554, C-terminal catalytic domain	NA|631aa|down_1|CP026079.1_1483959_1485852_+	cd01187, INT_tnpB_C_Tn554, Putative Transposase B from transposon Tn554, C-terminal catalytic domain	NA|126aa|down_2|CP026079.1_1485858_1486236_+	NA	NA|261aa|down_3|CP026079.1_1486386_1487169_+	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional	NA|244aa|down_4|CP026079.1_1487294_1488026_-	pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase	NA|221aa|down_5|CP026079.1_1488559_1489222_+	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|158aa|down_6|CP026079.1_1489437_1489911_-	NA	NA|326aa|down_7|CP026079.1_1490176_1491154_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_8|CP026079.1_1491155_1491476_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_9|CP026079.1_1491627_1492293_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5
GCA_001019305.2_ASM101930v2	CP026079	Staphylococcus aureus strain NRS70 chromosome, complete genome	10	1617874-1617963	8	CRISPRCasFinder	no		cas3,WYL,RT,csa3,DEDDh,DinG	Orphan	TGATTGAGAAGTCAGTCGAAAAAC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,RT,csa3,DEDDh,DinG	NA,NA|49aa|down_2|CP026079.1_1618516_1618663_+,NA|70aa|down_3|CP026079.1_1618655_1618865_+,NA|127aa|down_7|CP026079.1_1622160_1622541_+,NA|114aa|down_9|CP026079.1_1623628_1623970_+	NA|188aa|up_9|CP026079.1_1608209_1608773_-	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|45aa|up_8|CP026079.1_1609008_1609143_+	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|262aa|up_7|CP026079.1_1609742_1610528_-	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|209aa|up_6|CP026079.1_1610888_1611515_-	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|416aa|up_5|CP026079.1_1611711_1612959_+	PRK10819, PRK10819, transport protein TonB; Provisional	NA|248aa|up_4|CP026079.1_1612983_1613727_-	pfam02517, Abi, CAAX protease self-immunity	NA|95aa|up_3|CP026079.1_1613901_1614186_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|539aa|up_2|CP026079.1_1614261_1615878_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|391aa|up_1|CP026079.1_1615946_1617119_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|225aa|up_0|CP026079.1_1617132_1617807_-	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|73aa|down_0|CP026079.1_1617979_1618198_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|106aa|down_1|CP026079.1_1618202_1618520_+	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|49aa|down_2|CP026079.1_1618516_1618663_+	NA	NA|70aa|down_3|CP026079.1_1618655_1618865_+	NA	NA|109aa|down_4|CP026079.1_1618867_1619194_+	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|290aa|down_5|CP026079.1_1619258_1620128_+	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|570aa|down_6|CP026079.1_1620141_1621851_+	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|127aa|down_7|CP026079.1_1622160_1622541_+	NA	NA|214aa|down_8|CP026079.1_1622537_1623179_+	pfam16560, SAPI, Putative mobile pathogenicity island	NA|114aa|down_9|CP026079.1_1623628_1623970_+	NA
GCA_001019305.2_ASM101930v2	CP026079	Staphylococcus aureus strain NRS70 chromosome, complete genome	11	1633485-1633637	2,9	PILER-CR,CRISPRCasFinder	no	DEDDh	cas3,WYL,RT,csa3,DEDDh,DinG	Unclear	AATGCAAGTTGGGGTGGGGGCCCCAACACAGAGAAATTGGATTCCCAATTTC,ACAATGCAAGTTGGGGTGGGGGCC	52,24	2	14	1633596-1633618|1633596-1633618|1633596-1633618|1633596-1633618|1633596-1633618|1633596-1633618|1633596-1633618|1633596-1633618|1633596-1633618|1633550-1633583|1633550-1633583|1633550-1633583|1633550-1633583|1633550-1633583	CP026079.1_55387-55409|CP026079.1_914095-914117|CP026079.1_1942887-1942865|CP026079.1_2551122-2551100|CP026079.1_1884124-1884102|CP026079.1_2648157-2648179|CP026079.1_1361796-1361818|CP026079.1_1726759-1726781|CP026079.1_2545473-2545451|CP026079.1_55374-55407|CP026079.1_2551135-2551102|CP026079.1_1942900-1942867|CP026079.1_914082-914115|CP026079.1_2334988-2335021	NA:NA	2,1	2	Orphan	cas3,WYL,RT,csa3,DEDDh,DinG	NA|193aa|up_9|CP026079.1_1623981_1624560_+,NA|114aa|up_6|CP026079.1_1625376_1625718_+,NA|81aa|down_5|CP026079.1_1639798_1640041_-,NA|61aa|down_7|CP026079.1_1641134_1641317_-,NA|114aa|down_8|CP026079.1_1641520_1641862_-	NA|193aa|up_9|CP026079.1_1623981_1624560_+	NA	NA|73aa|up_8|CP026079.1_1624577_1624796_+	pfam16722, SAPIS-gp6, Pathogenicity island protein gp6 in Staphylococcus	NA|176aa|up_7|CP026079.1_1624846_1625374_+	COG5577, COG5577, Spore coat protein [Cell envelope biogenesis, outer membrane]	NA|114aa|up_6|CP026079.1_1625376_1625718_+	NA	NA|190aa|up_5|CP026079.1_1625714_1626284_+	COG3728, XtmA, Phage terminase, small subunit [DNA replication, recombination, and repair]	NA|235aa|up_4|CP026079.1_1626438_1627143_-	PRK13038, PRK13038, superantigen-like protein; Reviewed	NA|187aa|up_3|CP026079.1_1628021_1628582_-	cd15783, SA1633_like, Uncharacterized protein family conserved in Staphylococci	NA|267aa|up_2|CP026079.1_1629368_1630169_+	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|241aa|up_1|CP026079.1_1630337_1631060_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|436aa|up_0|CP026079.1_1632076_1633384_-	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|408aa|down_0|CP026079.1_1633827_1635051_-	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|352aa|down_1|CP026079.1_1635486_1636542_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|339aa|down_2|CP026079.1_1636563_1637580_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|275aa|down_3|CP026079.1_1637817_1638642_-	TIGR03395, Sphingomyelinase_C, sphingomyelin phosphodiesterase	NA|346aa|down_4|CP026079.1_1638698_1639736_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|81aa|down_5|CP026079.1_1639798_1640041_-	NA	NA|328aa|down_6|CP026079.1_1640051_1641035_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|61aa|down_7|CP026079.1_1641134_1641317_-	NA	NA|114aa|down_8|CP026079.1_1641520_1641862_-	NA	DEDDh|311aa|down_9|CP026079.1_1641867_1642800_-	PRK06195, PRK06195, DNA polymerase III subunit epsilon; Validated
GCA_001019305.2_ASM101930v2	CP026079	Staphylococcus aureus strain NRS70 chromosome, complete genome	12	2069551-2069635	10	CRISPRCasFinder	no		cas3,WYL,RT,csa3,DEDDh,DinG	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	1	2069577-2069609	CP026079.1_2339394-2339362	NA	1	1	Orphan	cas3,WYL,RT,csa3,DEDDh,DinG	NA,NA	NA|190aa|up_9|CP026079.1_2060180_2060750_+	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase	NA|195aa|up_8|CP026079.1_2060739_2061324_+	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|118aa|up_7|CP026079.1_2061324_2061678_+	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|239aa|up_6|CP026079.1_2061680_2062397_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|229aa|up_5|CP026079.1_2062436_2063123_+	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|154aa|up_4|CP026079.1_2063214_2063676_+	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|716aa|up_3|CP026079.1_2063734_2065882_+	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|325aa|up_2|CP026079.1_2065938_2066913_+	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|84aa|up_1|CP026079.1_2066957_2067209_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|608aa|up_0|CP026079.1_2067554_2069378_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|375aa|down_0|CP026079.1_2069943_2071068_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|326aa|down_1|CP026079.1_2071168_2072146_+	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|209aa|down_2|CP026079.1_2072177_2072804_+	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|611aa|down_3|CP026079.1_2072872_2074705_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|380aa|down_4|CP026079.1_2074840_2075980_+	PRK14280, PRK14280, molecular chaperone DnaJ	NA|313aa|down_5|CP026079.1_2075983_2076922_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|251aa|down_6|CP026079.1_2076923_2077676_+	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|449aa|down_7|CP026079.1_2077682_2079029_+	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|59aa|down_8|CP026079.1_2079321_2079498_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|228aa|down_9|CP026079.1_2079741_2080425_+	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
GCA_001019305.2_ASM101930v2	CP026079	Staphylococcus aureus strain NRS70 chromosome, complete genome	13	2814158-2814239	11	CRISPRCasFinder	no		cas3,WYL,RT,csa3,DEDDh,DinG	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	1	2814182-2814215	CP026079.1_2339395-2339362	NA	1	1	Orphan	cas3,WYL,RT,csa3,DEDDh,DinG	NA|38aa|up_0|CP026079.1_2813755_2813869_-,NA	NA|436aa|up_9|CP026079.1_2805941_2807249_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_8|CP026079.1_2807346_2808108_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_7|CP026079.1_2808435_2809287_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_6|CP026079.1_2809520_2809715_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_5|CP026079.1_2810068_2810890_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_4|CP026079.1_2810907_2811603_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_3|CP026079.1_2811595_2812621_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_2|CP026079.1_2812870_2813167_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_1|CP026079.1_2813159_2813546_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|38aa|up_0|CP026079.1_2813755_2813869_-	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
