The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP026957	Staphylococcus aureus strain FDAARGOS_43 chromosome, complete genome	2820631	30506	88301	2820631	protease,capsid,holin,terminase,tail,integrase,head,portal	Staphylococcus_phage(95.45%)	76	34461:34478	80921:80938
AVG51356.1|30506_31250_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AVG51357.1|31424_31709_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
AVG51358.1|31784_33401_+	molecular chaperone GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
AVG51359.1|34102_34315_+	pathogenicity island family protein	NA	Q4ZE86	Staphylococcus_phage	74.3	1.1e-23
AVG51360.1|34311_34902_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	94.7	1.2e-96
34461:34478	attL	ATATATACAAGAACAAAA	NA	NA	NA	NA
AVG53997.1|35218_35656_+	hypothetical protein	NA	NA	NA	NA	NA
AVG51361.1|35761_36205_+	N-acetyltransferase	NA	NA	NA	NA	NA
AVG51362.1|37058_38366_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
AVG51363.1|38526_39438_+	ferrichrome ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AVG51364.1|39499_40345_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AVG51365.1|40716_41940_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AVG51366.1|42375_43428_+	bi-component leukocidin LukGH subunit H	NA	A0A2I6PDF3	Staphylococcus_phage	32.1	1.6e-35
AVG51367.1|43449_44466_+	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.3	2.3e-26
AVG51368.1|45584_46622_-|integrase	site-specific integrase	integrase	E9LT82	Staphylococcus_phage	99.7	1.0e-194
AVG51369.1|46705_47434_-	exotoxin	NA	A0EX09	Staphylococcus_phage	32.3	6.4e-23
AVG51370.1|47457_48186_-	exotoxin	NA	A0EX09	Staphylococcus_phage	34.9	2.3e-28
AVG51371.1|48381_49152_-	transcriptional regulator	NA	A0A1P8L6G7	Staphylococcus_phage	100.0	6.2e-141
AVG51372.1|49310_49535_+	DUF739 domain-containing protein	NA	A7TW90	Staphylococcus_phage	100.0	4.5e-36
AVG51373.1|49552_49813_+	transcriptional regulator	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
AVG51374.1|49836_50376_-	hypothetical protein	NA	A7TW92	Staphylococcus_phage	100.0	1.7e-97
AVG51375.1|50432_51182_+	oxidoreductase	NA	Q8SDM9	Staphylococcus_phage	99.6	4.4e-136
AVG51376.1|51197_51395_+	hypothetical protein	NA	A0A1W6JPV3	Staphylococcus_phage	100.0	1.2e-24
AVG51377.1|51425_51566_+	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
AVG51378.1|51580_52213_-	hypothetical protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
AVG51379.1|52271_52592_+	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
AVG51380.1|52588_52750_+	DUF1270 domain-containing protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
AVG51381.1|52842_53103_+	hypothetical protein	NA	A0A2I6PDH1	Staphylococcus_phage	100.0	2.6e-43
AVG51382.1|53111_53375_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
AVG53998.1|53383_55327_+	ATPase	NA	A0A2I6PDH3	Staphylococcus_phage	99.1	0.0e+00
AVG51383.1|55328_56249_+	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
AVG51384.1|56329_56947_+	MBL fold metallo-hydrolase	NA	A0A1W6JPL3	Staphylococcus_phage	98.1	1.3e-85
AVG51385.1|56947_57418_+	Single-stranded DNA-binding protein 1	NA	A0A1P8L6D9	Staphylococcus_phage	96.2	7.7e-78
AVG51386.1|57447_58341_+	DnaD domain protein	NA	A0A0E3TAG7	Staphylococcus_phage	97.6	1.6e-137
AVG51387.1|58347_58566_+	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	98.6	4.0e-37
AVG51388.1|58574_58979_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A0H3U2W2	Staphylococcus_phage	91.0	6.9e-67
AVG51389.1|59319_59469_+	transcriptional regulator	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
AVG51390.1|59627_60278_+	hypothetical protein	NA	D2JLD8	Staphylococcus_phage	100.0	8.9e-117
AVG51391.1|60277_60478_+	hypothetical protein	NA	A0A2I6PDV9	Staphylococcus_phage	98.5	4.0e-28
AVG51392.1|60381_60594_-	hypothetical protein	NA	NA	NA	NA	NA
AVG51393.1|60500_60971_+	hypothetical protein	NA	D2JLE0	Staphylococcus_phage	99.3	1.7e-69
AVG51394.1|61085_61538_+	hypothetical protein	NA	D2JLE1	Staphylococcus_phage	100.0	1.4e-79
AVG53999.1|61553_61898_+	HNH endonuclease	NA	D2JLE2	Staphylococcus_phage	100.0	4.2e-65
AVG51395.1|62026_62494_+|terminase	phage terminase small subunit P27 family	terminase	D2JLE3	Staphylococcus_phage	100.0	1.1e-81
AVG51396.1|62496_64191_+|terminase	phage terminase large subunit	terminase	D2JLE4	Staphylococcus_phage	100.0	0.0e+00
AVG51397.1|64165_64405_+	hypothetical protein	NA	A7TWC1	Staphylococcus_phage	98.7	1.2e-34
AVG54000.1|64470_65661_+|portal	phage portal protein	portal	D2JLE6	Staphylococcus_phage	99.7	2.0e-223
AVG51398.1|65653_66238_+|head,protease	HK97 family phage prohead protease	head,protease	D2JLE7	Staphylococcus_phage	100.0	9.8e-107
AVG51399.1|66325_67573_+|capsid	phage major capsid protein	capsid	A7TWC4	Staphylococcus_phage	100.0	5.0e-209
AVG51400.1|67608_67767_+	hypothetical protein	NA	D2JLE9	Staphylococcus_phage	100.0	3.2e-20
AVG51401.1|67775_68108_+|head,tail	phage head-tail adapter protein	head,tail	D2JLF0	Staphylococcus_phage	100.0	2.1e-58
AVG51402.1|68094_68430_+|head,tail	head-tail adaptor protein	head,tail	A7TWC7	Staphylococcus_phage	100.0	1.1e-59
AVG51403.1|68429_68807_+	hypothetical protein	NA	D2JLF2	Staphylococcus_phage	100.0	1.1e-61
AVG51404.1|68803_69184_+	hypothetical protein	NA	D2JLF3	Staphylococcus_phage	99.2	2.2e-67
AVG51405.1|69184_70138_+|tail	phage tail protein	tail	A7TWD0	Staphylococcus_phage	100.0	6.2e-175
AVG51406.1|70202_70649_+	hypothetical protein	NA	D2JLF5	Staphylococcus_phage	100.0	5.4e-73
AVG51407.1|70708_70831_+	hypothetical protein	NA	D2JLF6	Staphylococcus_phage	100.0	6.9e-15
AVG51408.1|70886_75536_+|tail	phage tail tape measure protein	tail	A0A1V0E5H1	Staphylococcus_phage	94.7	0.0e+00
AVG51409.1|75535_77026_+|tail	phage tail protein	tail	R9QST9	Staphylococcus_phage	100.0	3.1e-298
AVG51410.1|77041_80824_+	hypothetical protein	NA	A0A1X9H096	Staphylococcus_phage	99.5	0.0e+00
AVG51411.1|80816_80969_+	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
80921:80938	attR	ATATATACAAGAACAAAA	NA	NA	NA	NA
AVG51412.1|81014_81302_+	hypothetical protein	NA	A0A1X9H0N7	Staphylococcus_phage	98.9	2.2e-43
AVG51413.1|81357_81732_+	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
AVG51414.1|82104_82878_+	enterotoxin	NA	A0A1X9H080	Staphylococcus_phage	100.0	1.1e-145
AVG54001.1|82986_83163_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
AVG51415.1|83215_83323_-	hypothetical protein	NA	NA	NA	NA	NA
AVG51416.1|83374_83629_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
AVG51417.1|83640_84396_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
AVG51418.1|84586_85078_+	staphylokinase	NA	A0A1W6JQ12	Staphylococcus_phage	98.8	6.8e-85
AVG51419.1|85524_85680_-	amidase	NA	NA	NA	NA	NA
AVG51420.1|85606_85861_+	amidase	NA	Q4ZCK0	Staphylococcus_virus	93.0	8.0e-13
AVG51421.1|85767_86064_+	peptidoglycan hydrolase	NA	A0A1P8L6B4	Staphylococcus_phage	95.9	1.6e-49
AVG51422.1|86575_86926_+	inhibitor	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
AVG51423.1|86978_87239_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
AVG51424.1|87217_87526_-	hypothetical protein	NA	M9NTD8	Staphylococcus_phage	100.0	3.2e-40
AVG51425.1|87549_87729_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	98.3	1.4e-24
AVG51426.1|88100_88301_-	hypothetical protein	NA	A0A1P8L6A7	Staphylococcus_phage	100.0	3.4e-27
>prophage 2
CP026957	Staphylococcus aureus strain FDAARGOS_43 chromosome, complete genome	2820631	181705	287573	2820631	protease,bacteriocin,transposase,tRNA	Staphylococcus_phage(93.33%)	107	NA	NA
AVG51511.1|181705_182848_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
AVG51512.1|182852_183323_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
AVG51513.1|183481_184081_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA	NA
AVG51514.1|184105_184258_+	hypothetical protein	NA	NA	NA	NA	NA
AVG51515.1|184322_184586_-	hypothetical protein	NA	NA	NA	NA	NA
AVG51516.1|184863_185259_+	hypothetical protein	NA	NA	NA	NA	NA
AVG51517.1|185454_186840_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AVG51518.1|187300_188122_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
AVG51519.1|188284_189397_+	histidine kinase	NA	NA	NA	NA	NA
AVG51520.1|189418_190042_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AVG51521.1|190397_190862_+	transcriptional regulator	NA	NA	NA	NA	NA
AVG51522.1|191040_192165_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AVG51523.1|192233_192578_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
AVG51524.1|192850_193057_-	hypothetical protein	NA	NA	NA	NA	NA
AVG51525.1|193070_193169_+	hypothetical protein	NA	NA	NA	NA	NA
AVG51526.1|193459_194656_+	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
AVG51527.1|194645_197582_+	DNA repair protein Rad50	NA	NA	NA	NA	NA
AVG51528.1|197578_198520_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
AVG51529.1|198640_199603_-	foldase	NA	NA	NA	NA	NA
AVG51530.1|199807_200365_-	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
AVG51531.1|200913_201120_-	hypothetical protein	NA	NA	NA	NA	NA
AVG51532.1|201097_201463_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
AVG51533.1|201604_202027_-	HIT family protein	NA	NA	NA	NA	NA
AVG51534.1|202160_202901_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	2.0e-24
AVG51535.1|202893_204117_+	multidrug ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AVG51536.1|204240_204744_-	signal transduction protein TRAP	NA	NA	NA	NA	NA
AVG51537.1|204906_205017_+	hypothetical protein	NA	NA	NA	NA	NA
AVG51538.1|205006_206044_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
AVG51539.1|206101_207025_+	ferrochelatase	NA	NA	NA	NA	NA
AVG51540.1|207048_208449_+	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
AVG51541.1|208389_208677_-	hypothetical protein	NA	NA	NA	NA	NA
AVG51542.1|208770_209325_+	serine hydrolase family protein	NA	NA	NA	NA	NA
AVG51543.1|211781_212570_-	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.8	5.3e-140
AVG51544.1|212582_213038_-	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.2	6.3e-61
AVG51545.1|213934_214870_+	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
AVG51546.1|214871_215855_+	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
AVG51547.1|216096_216240_+	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
AVG51548.1|216341_216533_-	hypothetical protein	NA	NA	NA	NA	NA
AVG51549.1|216976_217120_+	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
AVG51550.1|217184_220178_+|bacteriocin	bacteriocin biosynthesis protein	bacteriocin	A0A2H4PQG8	Staphylococcus_phage	97.0	0.0e+00
AVG51551.1|220170_221415_+	lanthionine synthetase	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
AVG51552.1|221430_221949_+	enterotoxin	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
AVG51553.1|221958_223332_+	peptidase S8	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
AVG51554.1|223354_224047_+	lantibiotic ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
AVG51555.1|224043_224805_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
AVG51556.1|224801_225500_+	BsaG protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
AVG51557.1|225973_226540_-	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
AVG51558.1|226849_227068_+	hypothetical protein	NA	NA	NA	NA	NA
AVG51559.1|227503_228211_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	99.6	7.7e-130
AVG51560.1|228335_229058_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	100.0	6.4e-132
AVG51561.1|229115_229835_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	100.0	1.1e-131
AVG51562.1|229955_230675_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.2	9.2e-131
AVG51563.1|230739_230874_+	hypothetical protein	NA	NA	NA	NA	NA
AVG51564.1|230854_232594_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	2.4e-289
AVG51565.1|232586_233786_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	1.6e-228
AVG51566.1|234635_238748_+	ATP-binding protein	NA	A0A2H4PQT3	Staphylococcus_phage	100.0	0.0e+00
AVG54007.1|239286_239646_+	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
AVG51567.1|239993_240095_-	hypothetical protein	NA	NA	NA	NA	NA
AVG51568.1|240515_240659_+	hypothetical protein	NA	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
AVG51569.1|240861_241071_+|transposase	transposase	transposase	A0A2H4PQV6	Staphylococcus_phage	100.0	1.4e-31
AVG51570.1|241262_241646_+	hypothetical protein	NA	NA	NA	NA	NA
AVG51571.1|241656_241833_+	hypothetical protein	NA	NA	NA	NA	NA
AVG51572.1|242206_242674_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	100.0	3.3e-65
AVG51573.1|242961_243534_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	89.7	3.3e-22
AVG51574.1|243634_243976_-	DUF3969 domain-containing protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	8.1e-53
AVG51575.1|244016_244643_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	94.7	3.6e-91
AVG51576.1|244716_245712_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	4.2e-73
AVG51577.1|245792_246443_-	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	99.1	3.0e-56
AVG54008.1|246745_247201_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	97.3	5.7e-78
AVG51578.1|247359_248838_+	2-succinylbenzoate-CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.6e-281
AVG51579.1|248842_249844_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.9	2.8e-186
AVG51580.1|249840_250098_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
AVG51581.1|250163_250637_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
AVG54009.1|250641_251388_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	99.2	2.2e-143
AVG51582.1|251765_253358_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
AVG51583.1|253729_254923_+	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
AVG51584.1|255047_255956_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.0	1.7e-137
AVG51585.1|256167_257001_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	100.0	5.4e-159
AVG51586.1|257012_257192_-	hypothetical protein	NA	NA	NA	NA	NA
AVG51587.1|257383_257737_-	camphor resistance protein CrcB	NA	A0A2H4PQQ7	Staphylococcus_phage	98.3	2.0e-22
AVG51588.1|257733_258099_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
AVG51589.1|258354_258657_-	hypothetical protein	NA	NA	NA	NA	NA
AVG51590.1|258916_259630_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
AVG51591.1|260069_260705_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AVG51592.1|261000_261444_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
AVG51593.1|261430_261874_-	competence protein ComK	NA	NA	NA	NA	NA
AVG51594.1|261986_262457_-	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
AVG51595.1|262655_262880_+	hypothetical protein	NA	NA	NA	NA	NA
AVG51596.1|263155_264010_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
AVG51597.1|264096_265389_-	arsenical efflux pump membrane protein ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.8	1.1e-227
AVG51598.1|265388_265703_-	ArsR family transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
AVG51599.1|266225_267728_+	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.5e-29
AVG51600.1|268220_269252_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.7	1.6e-197
AVG51601.1|269258_269891_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	6.4e-112
AVG51602.1|269901_271083_+	riboflavin biosynthesis protein RibBA	NA	A0A2H4PQS2	Staphylococcus_phage	100.0	1.7e-227
AVG51603.1|271095_271560_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
AVG51604.1|271681_272683_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
AVG54010.1|272591_272783_+	hypothetical protein	NA	NA	NA	NA	NA
AVG51605.1|272794_272914_+	hypothetical protein	NA	NA	NA	NA	NA
AVG51606.1|272916_273744_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AVG51607.1|274317_274719_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AVG51608.1|274838_275402_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
AVG51609.1|275398_276352_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
AVG51610.1|276461_277643_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	6.2e-217
AVG51611.1|277930_280354_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.7	0.0e+00
AVG51612.1|280375_280687_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
AVG51613.1|281012_287573_+	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	96.8	5.9e-301
>prophage 3
CP026957	Staphylococcus aureus strain FDAARGOS_43 chromosome, complete genome	2820631	411561	420604	2820631	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
AVG51726.1|411561_412566_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
AVG51727.1|412567_413593_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AVG51728.1|413615_414755_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
AVG51729.1|414773_415034_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
AVG51730.1|415308_417588_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
AVG51731.1|417790_420064_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.1	3.1e-63
AVG51732.1|420085_420604_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 4
CP026957	Staphylococcus aureus strain FDAARGOS_43 chromosome, complete genome	2820631	490213	498543	2820631	tRNA	Caulobacter_phage(16.67%)	7	NA	NA
AVG51802.1|490213_492031_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	7.9e-54
AVG51803.1|492254_493361_+	RNA polymerase sigma factor SigA	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
AVG51804.1|493491_494169_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
AVG51805.1|494171_495272_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
AVG51806.1|495385_496732_+	DEAD/DEAH box family ATP-dependent RNA helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
AVG51807.1|496741_497632_+	endonuclease	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.4e-26
AVG51808.1|497757_498543_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
>prophage 5
CP026957	Staphylococcus aureus strain FDAARGOS_43 chromosome, complete genome	2820631	554418	641047	2820631	protease,capsid,holin,terminase,tail,integrase,head,tRNA,portal	Staphylococcus_phage(81.58%)	102	555179:555196	600643:600660
AVG51874.1|554418_556170_+	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
555179:555196	attL	CTAAAAATATTAGAGACA	NA	NA	NA	NA
AVG51875.1|556414_557323_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
AVG54019.1|557474_559361_+	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	96.2	1.0e-112
AVG51876.1|559403_560609_-|integrase	site-specific integrase	integrase	M1RZA8	Staphylococcus_phage	100.0	1.0e-222
AVG51877.1|560718_561342_+	hypothetical protein	NA	B7T0F3	Staphylococcus_virus	99.5	9.8e-105
AVG51878.1|561540_561936_-	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	99.2	1.4e-69
AVG51879.1|561964_562399_-	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	100.0	1.2e-24
AVG51880.1|562416_562878_-	toxin	NA	A0A0H3U308	Staphylococcus_phage	97.4	4.3e-81
AVG51881.1|562890_563214_-	XRE family transcriptional regulator	NA	R4WAK9	Staphylococcus_phage	99.1	4.5e-53
AVG51882.1|563377_563626_+	XRE family transcriptional regulator	NA	A0A2I6PED6	Staphylococcus_phage	98.8	4.8e-39
AVG51883.1|563641_563887_+	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
AVG51884.1|563855_564221_-	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
AVG51885.1|564275_564491_+	hypothetical protein	NA	A0A2I6PDN5	Staphylococcus_phage	100.0	1.3e-32
AVG51886.1|564515_564779_+	helix-turn-helix domain-containing protein	NA	A0A2I6PDM6	Staphylococcus_phage	100.0	1.1e-44
AVG51887.1|564791_564953_+	DUF1270 domain-containing protein	NA	A0A2I6PEZ9	Staphylococcus_phage	100.0	5.0e-21
AVG51888.1|565031_565355_+	TrmB family transcriptional regulator	NA	A0A2I6PF12	Staphylococcus_phage	100.0	5.9e-53
AVG51889.1|565369_565732_+	hypothetical protein	NA	A0A2I6PEM7	Staphylococcus_phage	100.0	3.7e-56
AVG51890.1|565728_566895_+	DUF2800 domain-containing protein	NA	A0A2I6PEL9	Staphylococcus_phage	100.0	1.4e-221
AVG51891.1|566920_567478_+	DUF2815 domain-containing protein	NA	A0A2I6PEP8	Staphylococcus_phage	100.0	1.8e-97
AVG54020.1|567545_569498_+	DNA polymerase	NA	A0A2I6PEL4	Staphylococcus_phage	100.0	0.0e+00
AVG51892.1|569510_569696_+	DUF3113 domain-containing protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
AVG51893.1|569695_570097_+	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
AVG51894.1|570096_570354_+	DUF3310 domain-containing protein	NA	A0A2I6PEN5	Staphylococcus_phage	100.0	2.6e-43
AVG51895.1|570356_570557_+	hypothetical protein	NA	A0A2I6PEM3	Staphylococcus_phage	98.5	4.3e-30
AVG51896.1|570571_570814_+	hypothetical protein	NA	A0A2D1G5G2	Staphylococcus_phage	98.8	5.6e-40
AVG51897.1|570828_571080_+	DUF1024 domain-containing protein	NA	A0A2H4PQK1	Staphylococcus_phage	100.0	8.4e-39
AVG51898.1|571243_571525_+	hypothetical protein	NA	A0A2I6PCT3	Staphylococcus_phage	100.0	1.4e-47
AVG51899.1|571701_572235_+	dUTPase	NA	A0A2H4PQJ1	Staphylococcus_phage	100.0	2.1e-95
AVG51900.1|572271_572517_+	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
AVG51901.1|572513_572702_+	DUF1381 domain-containing protein	NA	A0A2H4PQK3	Staphylococcus_phage	100.0	1.8e-25
AVG51902.1|572676_572877_+	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
AVG51903.1|572864_573032_+	transcriptional regulator	NA	A0A2I6PF16	Staphylococcus_phage	98.2	4.7e-22
AVG51904.1|573099_573300_+	DUF1514 domain-containing protein	NA	A0A2I6PEP5	Staphylococcus_phage	100.0	4.9e-26
AVG51905.1|573326_573533_-	hypothetical protein	NA	A0A1X9IGZ9	Staphylococcus_phage	100.0	7.6e-30
AVG51906.1|573587_576035_+	hypothetical protein	NA	A0A2I6PEP4	Staphylococcus_phage	100.0	0.0e+00
AVG51907.1|576143_576242_-	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	3.7e-11
AVG54021.1|576375_576666_+	VRR-NUC domain-containing protein	NA	A0A2I6PE31	Staphylococcus_phage	100.0	6.5e-51
AVG51908.1|576646_578014_+	ATP-dependent helicase	NA	A0A2I6PE95	Staphylococcus_phage	100.0	1.7e-263
AVG51909.1|578026_578464_+	transcriptional regulator	NA	A0A2I6PEN3	Staphylococcus_phage	100.0	7.9e-77
AVG51910.1|578620_578935_+	HNH endonuclease	NA	A0A2I6PF37	Staphylococcus_phage	99.0	4.2e-56
AVG51911.1|579062_579368_+|terminase	phage terminase small subunit P27 family	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
AVG51912.1|579357_581049_+|terminase	terminase large subunit	terminase	Q4ZD20	Staphylococcus_virus	100.0	0.0e+00
AVG51913.1|581053_582292_+|portal	phage portal protein	portal	A0A2I6PF26	Staphylococcus_phage	100.0	1.2e-234
AVG51914.1|582275_583049_+|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
AVG51915.1|583060_584224_+|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
AVG51916.1|584292_584571_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
AVG51917.1|584582_584915_+	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
AVG51918.1|584911_585313_+	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
AVG51919.1|585313_585709_+	DUF3168 domain-containing protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
AVG51920.1|585743_586385_+|tail	phage tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
AVG51921.1|586476_586932_+|tail	phage tail protein	tail	A0A2I6PF45	Staphylococcus_phage	100.0	1.3e-77
AVG51922.1|586989_587331_+	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.5e-54
AVG51923.1|587381_587540_+	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
AVG51924.1|587553_593754_+|tail	phage tail tape measure protein	tail	A0A2I6PF36	Staphylococcus_phage	99.5	0.0e+00
AVG51925.1|593753_594578_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
AVG51926.1|594586_596170_+	peptidase	NA	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
AVG51927.1|596169_596460_+	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
AVG51928.1|596475_598386_+	hypothetical protein	NA	A0A2I6PF35	Staphylococcus_phage	100.0	0.0e+00
AVG51929.1|598385_599852_+	DUF2479 domain-containing protein	NA	A7TWK6	Staphylococcus_phage	100.0	7.6e-257
AVG51930.1|599851_600241_+	hypothetical protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
AVG51931.1|600233_600398_+	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
AVG51932.1|600443_600743_+	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
600643:600660	attR	CTAAAAATATTAGAGACA	NA	NA	NA	NA
AVG51933.1|600878_601181_+|holin	phage holin	holin	A0A2I6PF56	Staphylococcus_phage	100.0	3.1e-48
AVG51934.1|601191_602646_+	CHAP domain-containing protein	NA	M1TB12	Staphylococcus_phage	100.0	3.4e-289
AVG51935.1|603035_603974_+	Panton-Valentine bi-component leukocidin subunit S	NA	A0A2I6PER8	Staphylococcus_phage	100.0	3.7e-180
AVG51936.1|603969_604953_+	Panton-Valentine bi-component leukocidin subunit F	NA	A0A2I6PEU3	Staphylococcus_phage	100.0	4.0e-185
AVG54022.1|605135_605387_+	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	2.4e-25
AVG51937.1|605477_606383_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
AVG51938.1|606440_607358_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
AVG51939.1|607414_608329_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
AVG51940.1|608738_609284_+	ECF transporter S component	NA	NA	NA	NA	NA
AVG51941.1|609389_609638_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
AVG51942.1|609745_610699_+	hypothetical protein	NA	NA	NA	NA	NA
AVG51943.1|610688_612068_+	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.9e-56
AVG51944.1|612220_613681_+	elastin-binding protein EbpS	NA	NA	NA	NA	NA
AVG51945.1|613805_613922_+	hypothetical protein	NA	NA	NA	NA	NA
AVG51946.1|614082_615069_+	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
AVG51947.1|615183_616152_-	asparaginase	NA	NA	NA	NA	NA
AVG51948.1|616228_616888_+	cytidylate kinase	NA	NA	NA	NA	NA
AVG51949.1|617585_618761_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AVG51950.1|618982_620293_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AVG51951.1|620309_621308_+	glycerol-3-phosphate dehydrogenase (NAD(P)(+))	NA	NA	NA	NA	NA
AVG51952.1|621478_621751_+	DNA-binding protein HU	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
AVG51953.1|621940_622255_-	hypothetical protein	NA	NA	NA	NA	NA
AVG51954.1|622181_622754_+	heptaprenyl pyrophosphate synthase subunit A	NA	NA	NA	NA	NA
AVG51955.1|622756_623482_+	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
AVG54023.1|623498_624443_+	heptaprenyl diphosphate synthase	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
AVG51956.1|624534_624984_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	44.5	8.3e-29
AVG51957.1|625193_625394_+	hypothetical protein	NA	NA	NA	NA	NA
AVG51958.1|625780_626947_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.1	2.0e-34
AVG51959.1|626972_628037_+	3-dehydroquinate synthase	NA	NA	NA	NA	NA
AVG51960.1|628046_629345_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AVG51961.1|629351_630596_+	hypothetical protein	NA	NA	NA	NA	NA
AVG51962.1|630609_631185_+	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	27.2	2.1e-08
AVG51963.1|631174_631762_+	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
AVG54024.1|631833_632514_+	zinc metallopeptidase	NA	NA	NA	NA	NA
AVG51964.1|632849_633167_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
AVG51965.1|633408_634551_+	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
AVG51966.1|634555_635758_+	CCA-adding enzyme	NA	H7BUW3	unidentified_phage	42.5	3.2e-35
AVG51967.1|635744_636716_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AVG51968.1|636739_639433_+	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
AVG51969.1|639754_641047_+|tRNA	asparagine--tRNA ligase	tRNA	M1PB22	Moumouvirus	31.1	1.9e-54
>prophage 6
CP026957	Staphylococcus aureus strain FDAARGOS_43 chromosome, complete genome	2820631	1082784	1091257	2820631		Synechococcus_phage(33.33%)	9	NA	NA
AVG52364.1|1082784_1083351_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	1.0e-28
AVG52365.1|1083353_1084382_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
AVG52366.1|1084374_1085859_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
AVG52367.1|1085837_1088027_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
AVG52368.1|1088019_1088691_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
AVG52369.1|1088692_1088956_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AVG52370.1|1088955_1089660_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
AVG52371.1|1089663_1090788_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AVG52372.1|1090774_1091257_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
>prophage 7
CP026957	Staphylococcus aureus strain FDAARGOS_43 chromosome, complete genome	2820631	1110129	1129144	2820631	protease,bacteriocin,holin	Staphylococcus_phage(33.33%)	23	NA	NA
AVG52389.1|1110129_1111113_+|protease	serine protease	protease	A0A2H4PQP7	Staphylococcus_phage	32.3	6.0e-16
AVG52390.1|1111194_1112376_+|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
AVG52391.1|1112413_1112743_+	staphostatin B	NA	NA	NA	NA	NA
AVG52392.1|1112980_1113802_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
AVG52393.1|1113794_1114598_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
AVG52394.1|1114584_1116258_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase	NA	NA	NA	NA	NA
AVG52395.1|1116244_1117456_-	isochorismate synthase	NA	NA	NA	NA	NA
AVG52396.1|1117532_1117637_-	hypothetical protein	NA	NA	NA	NA	NA
AVG52397.1|1117787_1118726_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
AVG52398.1|1118776_1119328_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AVG52399.1|1119417_1119708_+	NINE protein	NA	A0A060AN66	Enterococcus_phage	38.0	7.5e-07
AVG52400.1|1119771_1119903_+	hypothetical protein	NA	NA	NA	NA	NA
AVG52401.1|1119948_1120908_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AVG52402.1|1121395_1121752_+	DoxX family protein	NA	NA	NA	NA	NA
AVG52403.1|1121840_1123322_-	glycosyl transferase family 1	NA	NA	NA	NA	NA
AVG52404.1|1123327_1123615_-	hypothetical protein	NA	NA	NA	NA	NA
AVG52405.1|1123955_1124246_+	hypothetical protein	NA	NA	NA	NA	NA
AVG52406.1|1124333_1124975_-|bacteriocin	bacteriocin ABC transporter ATP-binding protein	bacteriocin	G9BWD6	Planktothrix_phage	33.7	2.2e-19
AVG52407.1|1124971_1125292_-	hypothetical protein	NA	NA	NA	NA	NA
AVG54037.1|1127301_1127574_-|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
AVG52408.1|1127583_1127685_-	hypothetical protein	NA	NA	NA	NA	NA
AVG54038.1|1128223_1128301_-|holin	putative holin-like toxin	holin	NA	NA	NA	NA
AVG52409.1|1128541_1129144_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 8
CP026957	Staphylococcus aureus strain FDAARGOS_43 chromosome, complete genome	2820631	1281018	1298439	2820631	integrase,capsid,terminase	Staphylococcus_phage(57.14%)	20	1282816:1282833	1295763:1295780
AVG52558.1|1281018_1281741_+	exotoxin	NA	A0A1X9H080	Staphylococcus_phage	34.9	1.6e-26
AVG52559.1|1281907_1282708_-	exotoxin	NA	A0A097PAT7	Streptococcus_pyogenes_phage	43.8	8.0e-51
1282816:1282833	attL	ATTTAATGATTTCACGTT	NA	NA	NA	NA
AVG52560.1|1283496_1284051_+	hypothetical protein	NA	A0A1W6JQE5	Staphylococcus_phage	76.1	5.2e-73
AVG52561.1|1284350_1284911_-	hypothetical protein	NA	NA	NA	NA	NA
AVG52562.1|1284926_1285904_-	DUF4868 domain-containing protein	NA	NA	NA	NA	NA
AVG52563.1|1286112_1286268_-|terminase	terminase	terminase	A0A1W6JQF0	Staphylococcus_phage	94.0	5.3e-20
AVG52564.1|1286264_1286756_-	pathogenicity island protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	41.1	7.9e-25
AVG52565.1|1286937_1287996_-|capsid	phage capsid protein	capsid	A0A0K2CZ99	Paenibacillus_phage	26.6	3.6e-14
AVG52566.1|1287982_1288189_-	hypothetical protein	NA	NA	NA	NA	NA
AVG52567.1|1288169_1288376_-	hypothetical protein	NA	NA	NA	NA	NA
AVG52568.1|1288413_1288758_-	pathogenicity island protein	NA	A0A1W6JQD5	Staphylococcus_phage	65.2	2.7e-40
AVG52569.1|1289430_1291803_-	DNA primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	41.2	2.7e-147
AVG52570.1|1291894_1292194_-	DUF1474 domain-containing protein	NA	Q4ZE75	Staphylococcus_phage	66.7	5.9e-31
AVG52571.1|1292194_1292419_-	hypothetical protein	NA	A0A1W6JPA6	Staphylococcus_phage	60.3	2.9e-14
AVG52572.1|1292569_1292788_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AVG52573.1|1292939_1293677_+	XRE family transcriptional regulator	NA	A0A1W6JQE6	Staphylococcus_phage	31.2	1.2e-05
AVG54042.1|1293691_1294798_+|integrase	site-specific integrase	integrase	A0A1B2AQ00	Phage_Wrath	43.0	2.0e-76
AVG52574.1|1294809_1295025_+	hypothetical protein	NA	NA	NA	NA	NA
AVG52575.1|1295580_1296045_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	100.0	1.5e-81
1295763:1295780	attR	ATTTAATGATTTCACGTT	NA	NA	NA	NA
AVG52576.1|1296066_1298439_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.9	2.3e-93
>prophage 9
CP026957	Staphylococcus aureus strain FDAARGOS_43 chromosome, complete genome	2820631	1349066	1363797	2820631		uncultured_Caudovirales_phage(50.0%)	18	NA	NA
AVG52625.1|1349066_1349828_-	iron ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
AVG52626.1|1349824_1350781_-	iron ABC transporter permease	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
AVG54043.1|1350767_1351739_-	iron ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
AVG52627.1|1351777_1351933_-	hypothetical protein	NA	NA	NA	NA	NA
AVG52628.1|1352209_1352314_-	hypothetical protein	NA	NA	NA	NA	NA
AVG52629.1|1352446_1353418_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
AVG52630.1|1353535_1355641_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
AVG52631.1|1355603_1356002_-	protein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
AVG52632.1|1356151_1356418_-	ribonucleoside-diphosphate reductase	NA	NA	NA	NA	NA
AVG52633.1|1356802_1357669_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AVG52634.1|1357688_1358189_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
AVG52635.1|1358218_1358464_+	hypothetical protein	NA	NA	NA	NA	NA
AVG52636.1|1358529_1360035_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
AVG52637.1|1360112_1360214_-	hypothetical protein	NA	NA	NA	NA	NA
AVG52638.1|1360303_1361221_+	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.4	2.8e-07
AVG52639.1|1361633_1361729_-	hypothetical protein	NA	NA	NA	NA	NA
AVG52640.1|1361901_1362444_-	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
AVG52641.1|1362738_1363797_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	1.8e-21
>prophage 10
CP026957	Staphylococcus aureus strain FDAARGOS_43 chromosome, complete genome	2820631	1375769	1383590	2820631		Pandoravirus(16.67%)	10	NA	NA
AVG52651.1|1375769_1376921_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
AVG52652.1|1376904_1377498_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	43.5	1.2e-38
AVG52653.1|1377848_1378517_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
AVG52654.1|1378518_1378938_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
AVG52655.1|1378941_1379655_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
AVG52656.1|1379753_1380338_+	hypothetical protein	NA	NA	NA	NA	NA
AVG52657.1|1380617_1381058_+	hypothetical protein	NA	NA	NA	NA	NA
AVG52658.1|1381400_1381874_+	DoxX family protein	NA	NA	NA	NA	NA
AVG52659.1|1381848_1382535_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AVG52660.1|1382534_1383590_+	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
