assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_001018805.2_ASM101880v2	CP026960	Staphylococcus aureus strain FDAARGOS_15 chromosome, complete genome	1	56167-56265	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAGAGCCCCTAATTAATAAATTAAAAGGGG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|39aa|up_2|CP026960.1_54194_54311_+,NA|230aa|down_2|CP026960.1_58086_58776_-,NA|100aa|down_5|CP026960.1_59945_60245_+	NA|336aa|up_9|CP026960.1_45974_46982_+	pfam01384, PHO4, Phosphate transporter family	NA|266aa|up_8|CP026960.1_47569_48367_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|215aa|up_7|CP026960.1_48727_49372_+	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|717aa|up_6|CP026960.1_50068_52219_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|120aa|up_5|CP026960.1_52364_52724_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|239aa|up_4|CP026960.1_52913_53630_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|158aa|up_3|CP026960.1_53629_54103_+	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|39aa|up_2|CP026960.1_54194_54311_+	NA	NA|215aa|up_1|CP026960.1_54455_55100_+	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|289aa|up_0|CP026960.1_55215_56082_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|407aa|down_0|CP026960.1_56282_57503_+	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|163aa|down_1|CP026960.1_57499_57988_+	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|230aa|down_2|CP026960.1_58086_58776_-	NA	NA|148aa|down_3|CP026960.1_58902_59346_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|132aa|down_4|CP026960.1_59412_59808_+	PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional	NA|100aa|down_5|CP026960.1_59945_60245_+	NA	NA|181aa|down_6|CP026960.1_60324_60867_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|189aa|down_7|CP026960.1_60962_61529_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|153aa|down_8|CP026960.1_61530_61989_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|228aa|down_9|CP026960.1_61991_62675_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed
GCA_001018805.2_ASM101880v2	CP026960	Staphylococcus aureus strain FDAARGOS_15 chromosome, complete genome	2	198396-198477	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	198420-198453|198420-198453	CP026960.1_717948-717915|CP026960.1_806357-806390	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|38aa|up_1|CP026960.1_197298_197412_+,NA|38aa|down_0|CP026960.1_198710_198824_+	NA|206aa|up_9|CP026960.1_192153_192771_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|CP026960.1_192925_193420_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|CP026960.1_193818_194241_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|CP026960.1_194388_195105_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|CP026960.1_195187_195727_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|CP026960.1_195876_196197_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|CP026960.1_196340_196697_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|CP026960.1_196854_197235_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|CP026960.1_197298_197412_+	NA	NA|293aa|up_0|CP026960.1_197413_198292_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_0|CP026960.1_198710_198824_+	NA	NA|129aa|down_1|CP026960.1_199033_199420_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_2|CP026960.1_199412_199709_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_3|CP026960.1_199958_200984_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_4|CP026960.1_200976_201672_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_5|CP026960.1_201689_202511_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_6|CP026960.1_202864_203059_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_7|CP026960.1_203291_204143_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_8|CP026960.1_204470_205232_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_9|CP026960.1_205329_206637_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
GCA_001018805.2_ASM101880v2	CP026960	Staphylococcus aureus strain FDAARGOS_15 chromosome, complete genome	3	247251-247533	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	2	9	247281-247306|247281-247306|247281-247306|247281-247306|247281-247306|247281-247306|247395-247420|247395-247420|247395-247420	CP026960.1_155145-155120|CP026960.1_247225-247250|CP026960.1_118540-118565|CP026960.1_509749-509774|CP026960.1_2119225-2119200|CP026960.1_2119281-2119256|CP026960.1_155201-155176|CP026960.1_155257-155232|CP026960.1_2503082-2503107	NA	4	4	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|CP026960.1_236139_237636_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|110aa|up_8|CP026960.1_237628_237958_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|CP026960.1_237969_238398_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|CP026960.1_238390_240796_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|CP026960.1_240926_241310_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|CP026960.1_241373_241967_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|CP026960.1_242382_242760_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|CP026960.1_243121_244249_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|CP026960.1_244556_245747_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|CP026960.1_245855_247100_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|CP026960.1_247602_248532_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|CP026960.1_248773_250153_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|CP026960.1_250142_251348_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|CP026960.1_251698_253030_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|CP026960.1_253354_253930_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|CP026960.1_253934_254459_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|CP026960.1_254474_255050_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|CP026960.1_255209_258686_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|CP026960.1_258686_262340_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|CP026960.1_262505_263408_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCA_001018805.2_ASM101880v2	CP026960	Staphylococcus aureus strain FDAARGOS_15 chromosome, complete genome	4	380935-381022	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|40aa|up_0|CP026960.1_380811_380931_+,NA|45aa|down_0|CP026960.1_381031_381166_-,NA|432aa|down_1|CP026960.1_381317_382613_+,NA|68aa|down_2|CP026960.1_382633_382837_-	NA|730aa|up_9|CP026960.1_369389_371579_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_8|CP026960.1_371557_373042_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_7|CP026960.1_373034_374063_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_6|CP026960.1_374065_374632_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_5|CP026960.1_374646_376125_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_4|CP026960.1_376146_377394_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_3|CP026960.1_377658_378465_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_2|CP026960.1_378457_379858_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_1|CP026960.1_379872_380448_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|40aa|up_0|CP026960.1_380811_380931_+	NA	NA|45aa|down_0|CP026960.1_381031_381166_-	NA	NA|432aa|down_1|CP026960.1_381317_382613_+	NA	NA|68aa|down_2|CP026960.1_382633_382837_-	NA	NA|391aa|down_3|CP026960.1_383037_384210_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_4|CP026960.1_384263_384806_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_5|CP026960.1_384959_385226_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_6|CP026960.1_385228_386947_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_7|CP026960.1_387183_387417_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_8|CP026960.1_387614_388976_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_9|CP026960.1_388972_389992_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
GCA_001018805.2_ASM101880v2	CP026960	Staphylococcus aureus strain FDAARGOS_15 chromosome, complete genome	5	1161612-1161822	2	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CAATAATGTGCAAGTTGGGGTAAGGGCCCCAACACAGANNN	41	3	27	1161650-1161670|1161709-1161728|1161709-1161728|1161709-1161728|1161709-1161728|1161709-1161728|1161709-1161728|1161709-1161728|1161709-1161728|1161709-1161728|1161709-1161728|1161709-1161728|1161709-1161728|1161709-1161728|1161709-1161728|1161709-1161728|1161709-1161728|1161709-1161728|1161709-1161728|1161709-1161728|1161709-1161728|1161709-1161728|1161709-1161728|1161709-1161728|1161709-1161728|1161709-1161728|1161767-1161784	CP026960.1_1161591-1161611|CP026960.1_149694-149675|CP026960.1_149749-149730|CP026960.1_155354-155335|CP026960.1_155412-155393|CP026960.1_155470-155451|CP026960.1_198493-198474|CP026960.1_266951-266932|CP026960.1_390937-390918|CP026960.1_717816-717835|CP026960.1_806489-806470|CP026960.1_982852-982833|CP026960.1_1161536-1161555|CP026960.1_1361958-1361939|CP026960.1_1868354-1868373|CP026960.1_2119319-2119300|CP026960.1_2277119-2277138|CP026960.1_2420317-2420336|CP026960.1_2503213-2503232|CP026960.1_162560-162541|CP026960.1_509711-509730|CP026960.1_767161-767142|CP026960.1_1016818-1016799|CP026960.1_1371307-1371288|CP026960.1_2420371-2420390|CP026960.1_123140-123159|CP026960.1_1161594-1161611	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|199aa|up_9|CP026960.1_1152131_1152728_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|286aa|up_8|CP026960.1_1152756_1153614_-	PRK13668, PRK13668, hypothetical protein; Provisional	NA|104aa|up_7|CP026960.1_1153713_1154025_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|359aa|up_6|CP026960.1_1154089_1155166_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|104aa|up_5|CP026960.1_1155252_1155564_+	COG5584, COG5584, Predicted small secreted protein [Function unknown]	NA|281aa|up_4|CP026960.1_1155688_1156531_-	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain	NA|215aa|up_3|CP026960.1_1157000_1157645_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|264aa|up_2|CP026960.1_1157659_1158451_-	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|283aa|up_1|CP026960.1_1159000_1159849_-	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase	NA|470aa|up_0|CP026960.1_1159852_1161262_-	PRK07318, PRK07318, dipeptidase PepV; Reviewed	NA|141aa|down_0|CP026960.1_1162125_1162548_-	pfam12732, YtxH, YtxH-like protein	NA|232aa|down_1|CP026960.1_1162564_1163260_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|554aa|down_2|CP026960.1_1163256_1164918_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|423aa|down_3|CP026960.1_1165324_1166593_+	pfam03486, HI0933_like, HI0933-like protein	NA|2187aa|down_4|CP026960.1_1166709_1173270_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|104aa|down_5|CP026960.1_1173612_1173924_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|806aa|down_6|CP026960.1_1173945_1176363_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|394aa|down_7|CP026960.1_1176650_1177832_-	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|318aa|down_8|CP026960.1_1177941_1178895_+	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|188aa|down_9|CP026960.1_1178891_1179455_+	pfam06962, rRNA_methylase, Putative rRNA methylase
GCA_001018805.2_ASM101880v2	CP026960	Staphylococcus aureus strain FDAARGOS_15 chromosome, complete genome	6	1360509-1360587	4	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	TGTTGGGGCCCCGCCAACCTGCA	23	1	6	1360532-1360564|1360532-1360564|1360532-1360564|1360532-1360564|1360532-1360564|1360532-1360564	CP026960.1_155156-155188|CP026960.1_155212-155244|CP026960.1_717902-717870|CP026960.1_982882-982914|CP026960.1_1953925-1953957|CP026960.1_806403-806435	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|92aa|up_6|CP026960.1_1354703_1354979_+,NA|129aa|up_1|CP026960.1_1358964_1359351_-,NA|138aa|down_1|CP026960.1_1362270_1362684_-,NA|37aa|down_2|CP026960.1_1362712_1362823_-,NA|31aa|down_6|CP026960.1_1365828_1365921_-	NA|419aa|up_9|CP026960.1_1352626_1353883_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|CP026960.1_1353885_1354086_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|CP026960.1_1354232_1354697_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|CP026960.1_1354703_1354979_+	NA	NA|406aa|up_5|CP026960.1_1355256_1356474_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|CP026960.1_1356589_1357219_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|CP026960.1_1357208_1358252_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|CP026960.1_1358248_1358950_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|CP026960.1_1358964_1359351_-	NA	NA|253aa|up_0|CP026960.1_1359567_1360326_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|CP026960.1_1360853_1361840_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|CP026960.1_1362270_1362684_-	NA	NA|37aa|down_2|CP026960.1_1362712_1362823_-	NA	NA|244aa|down_3|CP026960.1_1362908_1363640_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|CP026960.1_1363641_1364955_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|CP026960.1_1365246_1365747_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|CP026960.1_1365828_1365921_-	NA	DEDDh|185aa|down_7|CP026960.1_1366135_1366690_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|CP026960.1_1366757_1367828_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|CP026960.1_1368074_1368605_-	pfam11667, DUF3267, Putative zincin peptidase
GCA_001018805.2_ASM101880v2	CP026960	Staphylococcus aureus strain FDAARGOS_15 chromosome, complete genome	7	1552585-1552674	5	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_6|CP026960.1_1547456_1547687_-,NA|364aa|up_0|CP026960.1_1551476_1552568_+,NA|35aa|down_0|CP026960.1_1553010_1553115_-,NA|31aa|down_3|CP026960.1_1555226_1555319_+	NA|148aa|up_9|CP026960.1_1543897_1544341_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_8|CP026960.1_1544540_1544954_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_7|CP026960.1_1545411_1546785_-	pfam01878, EVE, EVE domain	NA|77aa|up_6|CP026960.1_1547456_1547687_-	NA	NA|286aa|up_5|CP026960.1_1547717_1548575_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|75aa|up_4|CP026960.1_1548510_1548735_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|CP026960.1_1549091_1549757_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|CP026960.1_1549908_1550229_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|CP026960.1_1550230_1551211_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|CP026960.1_1551476_1552568_+	NA	NA|35aa|down_0|CP026960.1_1553010_1553115_-	NA	NA|68aa|down_1|CP026960.1_1553539_1553743_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|379aa|down_2|CP026960.1_1553801_1554938_-	pfam02037, SAP, SAP domain	NA|31aa|down_3|CP026960.1_1555226_1555319_+	NA	NA|286aa|down_4|CP026960.1_1556023_1556881_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_5|CP026960.1_1556948_1557731_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_6|CP026960.1_1557962_1559768_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_7|CP026960.1_1560448_1561987_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_8|CP026960.1_1562021_1564154_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_9|CP026960.1_1564165_1564600_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]
GCA_001018805.2_ASM101880v2	CP026960	Staphylococcus aureus strain FDAARGOS_15 chromosome, complete genome	8	1676510-1676703	3	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	14	1676533-1676565|1676533-1676565|1676533-1676565|1676533-1676565|1676533-1676565|1676589-1676624|1676589-1676624|1676589-1676624|1676589-1676624|1676648-1676680|1676648-1676680|1676648-1676680|1676648-1676680|1676648-1676680	CP026960.1_155156-155188|CP026960.1_155212-155244|CP026960.1_717902-717870|CP026960.1_806403-806435|CP026960.1_1953925-1953957|CP026960.1_509742-509707|CP026960.1_1161567-1161532|CP026960.1_982821-982856|CP026960.1_1371276-1371311|CP026960.1_155100-155132|CP026960.1_155156-155188|CP026960.1_155212-155244|CP026960.1_717902-717870|CP026960.1_1953925-1953957	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|CP026960.1_1667035_1667200_+,NA|106aa|up_8|CP026960.1_1667444_1667762_+,NA|84aa|up_5|CP026960.1_1672886_1673138_+,NA|57aa|up_0|CP026960.1_1676279_1676450_+,NA	NA|55aa|up_9|CP026960.1_1667035_1667200_+	NA	NA|106aa|up_8|CP026960.1_1667444_1667762_+	NA	NA|1056aa|up_7|CP026960.1_1667948_1671116_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|CP026960.1_1671232_1672498_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|CP026960.1_1672886_1673138_+	NA	NA|255aa|up_4|CP026960.1_1673129_1673894_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|CP026960.1_1674055_1674496_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|CP026960.1_1674488_1675700_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|CP026960.1_1675803_1676154_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|CP026960.1_1676279_1676450_+	NA	NA|341aa|down_0|CP026960.1_1676844_1677867_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|CP026960.1_1677886_1678486_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|CP026960.1_1678492_1678726_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|CP026960.1_1678731_1679178_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|CP026960.1_1679191_1679677_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|CP026960.1_1679673_1680933_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|CP026960.1_1680995_1681490_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|CP026960.1_1681491_1681998_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|CP026960.1_1682028_1683033_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|CP026960.1_1683202_1683808_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCA_001018805.2_ASM101880v2	CP026960	Staphylococcus aureus strain FDAARGOS_15 chromosome, complete genome	9	2557525-2557625	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|128aa|up_8|CP026960.1_2550131_2550515_-,NA|98aa|up_6|CP026960.1_2551468_2551762_-,NA|34aa|up_1|CP026960.1_2556749_2556851_+,NA|86aa|up_0|CP026960.1_2557058_2557316_-,NA|221aa|down_1|CP026960.1_2558715_2559378_-,NA|179aa|down_7|CP026960.1_2565469_2566006_-	NA|194aa|up_9|CP026960.1_2549484_2550066_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_8|CP026960.1_2550131_2550515_-	NA	NA|209aa|up_7|CP026960.1_2550769_2551396_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|98aa|up_6|CP026960.1_2551468_2551762_-	NA	NA|508aa|up_5|CP026960.1_2551840_2553364_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_4|CP026960.1_2553379_2553949_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_3|CP026960.1_2554440_2555196_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_2|CP026960.1_2555276_2556665_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_1|CP026960.1_2556749_2556851_+	NA	NA|86aa|up_0|CP026960.1_2557058_2557316_-	NA	NA|319aa|down_0|CP026960.1_2557641_2558598_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|CP026960.1_2558715_2559378_-	NA	NA|136aa|down_2|CP026960.1_2559520_2559928_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|CP026960.1_2560440_2561019_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|CP026960.1_2561018_2562287_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|CP026960.1_2562324_2563791_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|CP026960.1_2563815_2565357_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|CP026960.1_2565469_2566006_-	NA	NA|235aa|down_8|CP026960.1_2566398_2567103_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|CP026960.1_2567501_2567774_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCA_001018805.2_ASM101880v2	CP026960	Staphylococcus aureus strain FDAARGOS_15 chromosome, complete genome	10	2792806-2792898	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_4|CP026960.1_2789289_2789397_+,NA|103aa|up_1|CP026960.1_2791508_2791817_-,NA|169aa|down_4|CP026960.1_2796645_2797152_+,NA|239aa|down_5|CP026960.1_2797313_2798030_+	NA|179aa|up_9|CP026960.1_2784640_2785177_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_8|CP026960.1_2785345_2785822_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_7|CP026960.1_2785861_2787157_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_6|CP026960.1_2787184_2787706_+	pfam08741, YwhD, YwhD family	NA|337aa|up_5|CP026960.1_2788204_2789215_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_4|CP026960.1_2789289_2789397_+	NA	NA|128aa|up_3|CP026960.1_2789522_2789906_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_2|CP026960.1_2789902_2791564_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|103aa|up_1|CP026960.1_2791508_2791817_-	NA	NA|212aa|up_0|CP026960.1_2791952_2792588_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_0|CP026960.1_2793026_2793854_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|CP026960.1_2794001_2794952_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|CP026960.1_2795006_2795726_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|CP026960.1_2795709_2796510_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|CP026960.1_2796645_2797152_+	NA	NA|239aa|down_5|CP026960.1_2797313_2798030_+	NA	NA|263aa|down_6|CP026960.1_2798198_2798987_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|CP026960.1_2799237_2799612_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|NA	NA	NA|NA	NA
